Citrus Sinensis ID: 044109

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MESLSKDPSPSEASSIISTPEENKVGDHEEEAKATLSFDLNLDRSDSDDQGFNQELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYYSTAAAATSSRRFSLVRNMMGSSSQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccEccccccccc
Coil and Loop (DISEMBL)
meslskdpspseassiistpeenkvgdheeEAKATLsfdlnldrsdsddqgfnqELNLIDslnntgsssqissetphatndhpseqrvfscnycqrkfyssqalgghqnahKRERTLAKRGqrigtytaaspfafgqpylhqnhyssisslplhgaaynrslGIQVhsmihkpshtstshgngniyghnnwsrppieqqpaigrlsSMENYYSTAAAATSSRRFSLVRNMMGSSSQ
Flexible Loop (DISEMBL)
meslskdpspseassiistpeenkvgdHEEEAKATLSFDLNLDRSDSDDQGFNQELNLIDSLNNTGSSSQISSETphatndhpseQRVFSCNYCQRKFYssqalgghqnaHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYYSTAaaatssrrfSLVRNMMGSSSQ
Low Complexity Region (SEG)
MESLSKDPSPSEASSIISTPEENKVGDHEEEAKATLSFDLNLDRSDSDDQGFNQELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYYstaaaatssrrfsLVRNMMGSSSQ
Disordered region (IsUnstruct)
***************************************************************************************VFSCNYCQRKFYSSQA******************QRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMI******************************************************************
Disordered Region (DISOPRED)
****************************************************************************************FSCNYCQRKFYSSQALGGHQNA***************************************SL*LHGAAYN*****************************************************************************
Disordered Region (DISEMBL)
*******************************AKATLSFDLNLDRSDSDDQGFNQELNLIDSLNNT*******************EQRVFSCNYCQRKFYSSQ*************TLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYYSTAAAATSSRRFSLVRNMMGSSSQ
Disordered Region (DISPRO)
*************************************************************************************QRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSM****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLSKDPSPSEASSIISTPEENKVGDHEEEAKATLSFDLNLDRSDSDDQGFNQELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYYSTAAAATSSRRFSLVRNMMGSSSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q39262	235	Zinc finger protein 3 OS=	no	no	0.648	0.651	0.522	5e-38
Q42485	228	Zinc finger protein 1 OS=	no	no	0.572	0.592	0.5	3e-29
Q39263	260	Zinc finger protein 4 OS=	no	no	0.385	0.35	0.541	2e-20
Q39266	209	Zinc finger protein 7 OS=	no	no	0.423	0.478	0.409	5e-15
Q39261	150	Zinc finger protein 2 OS=	no	no	0.207	0.326	0.660	5e-13
Q9FFX4	161	Zinc finger protein KNUCK	no	no	0.283	0.416	0.473	9e-12
Q39265	197	Zinc finger protein 6 OS=	no	no	0.279	0.335	0.464	7e-10
Q9SR34	172	Transcriptional regulator	no	no	0.254	0.348	0.370	8e-05
Q9LHS9	226	Probable transcriptional	no	no	0.144	0.150	0.529	8e-05
Q38895	204	Transcriptional regulator	no	no	0.122	0.142	0.551	0.0001

>sp|Q39262|ZFP3_ARATH Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1

 Score =  157 bits (397), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 114/176 (64%), Gaps = 23/176 (13%)

Query: 37  SFDLNLDRSDSDDQGFNQELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQR 96
           S + +++  + D    + ELNLID +++T S   I +E+  +T     EQ++FSCNYCQR
Sbjct: 17  SLNQSIEDEERDVHNSSHELNLIDCIDDTTS---IVNESTTST-----EQKLFSCNYCQR 68

Query: 97  KFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGA 156
            FYSSQALGGHQNAHKRERTLAKRGQR+    AAS  AFG PY         S LP HG 
Sbjct: 69  TFYSSQALGGHQNAHKRERTLAKRGQRM----AASASAFGHPY-------GFSPLPFHGQ 117

Query: 157 AYN-RSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENY 211
             N RSLGIQ HS+ HK    S+ +G G  YG  NWSR P +QQPAIG+  SM+N+
Sbjct: 118 YNNHRSLGIQAHSISHK---LSSYNGFGGHYGQINWSRLPFDQQPAIGKFPSMDNF 170

Arabidopsis thaliana (taxid: 3702)

>sp|Q42485|ZFP1_ARATH Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 98/160 (61%), Gaps = 25/160 (15%)

Query: 55  ELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRE 114
           ELNLIDS   + SS+           +  ++ RVFSCNYCQRKFYSSQALGGHQNAHKRE
Sbjct: 38  ELNLIDSFKTSSSSTSHHQ----HQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRE 93

Query: 115 RTLAKRGQRIGTYTAASP---FAFGQPYLHQNHYSSISSLPLHGAAYNRS-LGIQVHSMI 170
           RTLAKRGQ      ++ P   FAFG   +  + ++S++SLPLHG+  NRS LGIQ HS I
Sbjct: 94  RTLAKRGQYYKMTLSSLPSSAFAFGHGSV--SRFASMASLPLHGSVNNRSTLGIQAHSTI 151

Query: 171 HKPSH-----TSTSHGNGNIYGHNNWSRPPIEQQPAIGRL 205
           HKPS      TS SH            +  I Q+P IG++
Sbjct: 152 HKPSFLGRQTTSLSH----------VFKQSIHQKPTIGKM 181

Arabidopsis thaliana (taxid: 3702)

>sp|Q39263|ZFP4_ARATH Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 60/96 (62%), Gaps = 5/96 (5%)

Query: 86  QRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHY 145
           +RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  R+G             Y      
Sbjct: 82  KRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATA 141

Query: 146 SSISSLPLHGAAYN-----RSLGIQVHSMIHKPSHT 176
           +++S LPLHG+        R+LGI+ HS  H  S T
Sbjct: 142 AALSCLPLHGSGNGNMTSFRTLGIRAHSSAHDVSMT 177

Arabidopsis thaliana (taxid: 3702)

>sp|Q39266|ZFP7_ARATH Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 69/132 (52%), Gaps = 32/132 (24%)

Query: 41  NLDRSDSDDQGFNQELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYS 100
           N D S  +    + +L L D+ N+   S++  +             RVFSCNYC+RKFYS
Sbjct: 22  NQDLSKPESNHVSLDLKLNDTFNDDTKSTKCEANP-----------RVFSCNYCRRKFYS 70

Query: 101 SQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNR 160
           SQALGGHQNAHKRERT+AKR   +G         FG    H   Y+  SS          
Sbjct: 71  SQALGGHQNAHKRERTMAKRAMHMGR-------MFGH---HHRPYTYTSS---------- 110

Query: 161 SLGIQVHS-MIH 171
           SLG+Q HS ++H
Sbjct: 111 SLGMQAHSGLLH 122

Arabidopsis thaliana (taxid: 3702)

>sp|Q39261|ZFP2_ARATH Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 40/53 (75%), Gaps = 4/53 (7%)

Query: 87  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI----GTYTAASPFAF 135
           RVFSCNYCQRKFYSSQALGGHQNAHK ERTLAK+ + +     T  +  P+ F
Sbjct: 50  RVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELFRSSNTVDSDQPYPF 102

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFX4|KNU_ARATH Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1

 Score = 70.5 bits (171), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 9/76 (11%)

Query: 82  HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPF-----AFG 136
           HP+  R+F C YC RKFY+SQALGGHQNAHKRER  A+R   +G    + P       F 
Sbjct: 31  HPASHRLFPCQYCPRKFYTSQALGGHQNAHKRERAAARRN--LGVLANSPPILDDNNTFL 88

Query: 137 QPY--LHQNHYSSISS 150
           +PY   +QN +   +S
Sbjct: 89  RPYPCFYQNPFQGSTS 104

May function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39265|ZFP6_ARATH Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 56  LNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRER 115
           +NL+++     +S Q  S  P   +   SE R + C YC R+F +SQALGGHQNAHK+ER
Sbjct: 13  INLLET-----TSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKER 67

Query: 116 TLAKRGQRIGT 126
            L KR Q + T
Sbjct: 68  QLLKRAQMLAT 78

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR34|TAC1_ARATH Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 63  NNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQ 122
           N    S  IS  +    +D  ++ R + C++C R F ++QALGGH N H+R+R  AK  Q
Sbjct: 9   NADDCSDSISKNSHQGVDDSLNQSRSYVCSFCIRGFSNAQALGGHMNIHRRDR--AKLRQ 66

Query: 123 RI 124
           ++
Sbjct: 67  KL 68

Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHS9|RBE_ARATH Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 87  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR 120
           R +SC++C R+F S+QALGGH N H+R+R   K+
Sbjct: 53  RSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQ 86

Probable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38895|SUP_ARATH Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 25/29 (86%)

Query: 87  RVFSCNYCQRKFYSSQALGGHQNAHKRER 115
           R ++C++C+R+F S+QALGGH N H+R+R
Sbjct: 45  RSYTCSFCKREFRSAQALGGHMNVHRRDR 73

Probable transcriptional regulator considered as cadastral protein that acts indirectly to prevent the B class homeotic proteins APETALA3 and perhaps PISTILLATA from acting in the gynoecial whorl. Principal function is to balance cell proliferation in the third and fourth whorls of developing flowers thereby maintaining the boundary between stamens and carpels. May fulfill this role by repressing genes implicated in cell division. Plays equally a role in the determinacy of the floral meristem. Is also required for normal ovule development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
225430380	286	PREDICTED: zinc finger protein 3-like [V	0.966	0.797	0.568	1e-70
296082081	252	unnamed protein product [Vitis vinifera]	0.885	0.829	0.594	5e-65
224092564	192	predicted protein [Populus trichocarpa]	0.716	0.880	0.653	8e-52
224143273	191	predicted protein [Populus trichocarpa]	0.699	0.863	0.649	1e-49
255548786	253	zinc finger protein, putative [Ricinus c	0.889	0.830	0.506	1e-49
147832714	267	hypothetical protein VITISV_000223 [Viti	0.906	0.801	0.491	9e-48
225443097	267	PREDICTED: zinc finger protein 1-like [V	0.906	0.801	0.491	2e-47
255572763	280	zinc finger protein, putative [Ricinus c	0.826	0.696	0.536	3e-47
449469240	248	PREDICTED: zinc finger protein 3-like [C	0.885	0.842	0.458	1e-44
449530598	249	PREDICTED: zinc finger protein 3-like [C	0.872	0.827	0.469	1e-44

>gi|225430380|ref|XP_002282938.1| PREDICTED: zinc finger protein 3-like [Vitis vinifera]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/262 (56%), Positives = 171/262 (65%), Gaps = 34/262 (12%)

Query: 1   MESLSKDPSPSEASSII-STPEENKV----------------------GDHEEEAKATLS 37
           ME L K+P PSE S+II STPE                           DHE++ K  L 
Sbjct: 1   MEQLRKEPCPSETSTIIISTPEAASCPDKPSQSPKEINLEEEEEEEEEEDHEKKTKVDLL 60

Query: 38  FDLNLDRSDSDDQGFNQELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRK 97
           F+L L   D+ D GFN ELNLID LN    SSQ SSE P   +  P   RVFSCNYCQRK
Sbjct: 61  FNLELHSKDAADHGFNTELNLIDCLNT--DSSQTSSEIPQPADAEP---RVFSCNYCQRK 115

Query: 98  FYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAA 157
           FYSSQALGGHQNAHKRERTLAKRGQR+G    A+  AFG PY H  HYSS++SLPLHG A
Sbjct: 116 FYSSQALGGHQNAHKRERTLAKRGQRLGAPMVAAATAFGHPYFHHQHYSSMASLPLHG-A 174

Query: 158 YNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYYSTAAA 217
           YNRSLGIQVHSMIHKPS T+ S G+GN+YGH +WSRPPI+QQPA+GRL ++EN +    A
Sbjct: 175 YNRSLGIQVHSMIHKPSLTTPSSGSGNLYGHRSWSRPPIDQQPAVGRL-AVENCHEGVTA 233

Query: 218 ATSSR----RFSLVRNMMGSSS 235
              SR    RF  VR M+ S +
Sbjct: 234 GPLSRGGIGRFDTVRMMINSQA 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082081|emb|CBI21086.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 156/227 (68%), Gaps = 18/227 (7%)

Query: 20  PEENKVGDHE-------EEAKATLSFDLNLDRSDSDDQGFNQELNLIDSLNNTGSSSQIS 72
           PE+ K+   E       +  K  L F+L L   D+ D GFN ELNLID LN    SSQ S
Sbjct: 2   PEDKKIKLREVNENSCPQLTKVDLLFNLELHSKDAADHGFNTELNLIDCLNT--DSSQTS 59

Query: 73  SETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASP 132
           SE P   +  P   RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQR+G    A+ 
Sbjct: 60  SEIPQPADAEP---RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRLGAPMVAAA 116

Query: 133 FAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWS 192
            AFG PY H  HYSS++SLPLHG AYNRSLGIQVHSMIHKPS T+ S G+GN+YGH +WS
Sbjct: 117 TAFGHPYFHHQHYSSMASLPLHG-AYNRSLGIQVHSMIHKPSLTTPSSGSGNLYGHRSWS 175

Query: 193 RPPIEQQPAIGRLSSMENYYSTAAAATSSR----RFSLVRNMMGSSS 235
           RPPI+QQPA+GRL ++EN +    A   SR    RF  VR M+ S +
Sbjct: 176 RPPIDQQPAVGRL-AVENCHEGVTAGPLSRGGIGRFDTVRMMINSQA 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092564|ref|XP_002309664.1| predicted protein [Populus trichocarpa] gi|222855640|gb|EEE93187.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 119/182 (65%), Positives = 138/182 (75%), Gaps = 13/182 (7%)

Query: 55  ELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRE 114
           ELNLI S ++   SS+ S ETP  T+   +EQRVFSCNYCQRKFYSSQALGGHQNAHKRE
Sbjct: 1   ELNLIGSFSSM-DSSKTSPETPQGTD---AEQRVFSCNYCQRKFYSSQALGGHQNAHKRE 56

Query: 115 RTLAKRGQR-IGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKP 173
           RTLAKRG R IG+  AAS  A+G PY H +H+SS++SLPLHG    RSLGIQVHSMIHKP
Sbjct: 57  RTLAKRGHRLIGSQLAASIAAYGHPYFHHHHHSSMASLPLHG----RSLGIQVHSMIHKP 112

Query: 174 SHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYYSTAAAATSSR---RFSLVRNM 230
           SH S+S G GN+YGH +WSRPP++QQP IG+L SMENYY   A A+S     RF+L R  
Sbjct: 113 SHLSSSIGFGNMYGHGSWSRPPMDQQPGIGKL-SMENYYMNIATASSRAGVGRFNLERTS 171

Query: 231 MG 232
            G
Sbjct: 172 SG 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143273|ref|XP_002324901.1| predicted protein [Populus trichocarpa] gi|222866335|gb|EEF03466.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/177 (64%), Positives = 134/177 (75%), Gaps = 12/177 (6%)

Query: 55  ELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRE 114
           ELNLID+  +   SS+ S ETP  T+    EQRVFSCNYCQRKFYSSQALGGHQNAHKRE
Sbjct: 1   ELNLIDNFRSM-DSSETSPETPQGTD---GEQRVFSCNYCQRKFYSSQALGGHQNAHKRE 56

Query: 115 RTLAKRGQR-IGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKP 173
           RTLAKRGQR I +   AS  A+G PY H +H+SS++SLPLHG    RSLGIQVHSMIHKP
Sbjct: 57  RTLAKRGQRLIRSQLEASMAAYGHPYFHHHHHSSMASLPLHG----RSLGIQVHSMIHKP 112

Query: 174 SHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYY--STAAAATSSRRFSLVR 228
           SH S+S G GN+YGH +WSRP I+QQP IG+L SMEN+Y  +T  +  S  RF+L R
Sbjct: 113 SHLSSSTGFGNVYGHGSWSRPHIDQQPGIGKL-SMENFYMNATTPSRASVGRFNLER 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548786|ref|XP_002515449.1| zinc finger protein, putative [Ricinus communis] gi|223545393|gb|EEF46898.1| zinc finger protein, putative [Ricinus communis]

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 157/235 (66%), Gaps = 25/235 (10%)

Query: 1   MESLSKDPS--PS-EASSIISTPEENKVGDHEEEAKA---TLSFDLNLDRSDSDDQGFNQ 54
           MES  K+ S  P  +   ++   E+  V D E+E +    +L  DL L  SD++  GF+Q
Sbjct: 1   MESQRKEVSNRPCLDTRELVEEEEDGDVKDQEQEEEKGNPSLLLDLELISSDTE-HGFSQ 59

Query: 55  ELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRE 114
           ELNLID  +        SS+TP A  D   EQR+FSCNYCQRKFYSS+ALGGHQNAHKRE
Sbjct: 60  ELNLIDCFDVD------SSDTPQANTD--VEQRIFSCNYCQRKFYSSKALGGHQNAHKRE 111

Query: 115 RTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPS 174
           RTLA+RGQ+I  + A+   AFG  YLH ++Y+S+++LPLHG    RSLGI+VHSMIHKP 
Sbjct: 112 RTLARRGQKINNHVAS---AFGHTYLHHHYYTSMAALPLHG----RSLGIKVHSMIHKPC 164

Query: 175 HTSTSHG-NGNIYGHNNWSRPPIEQQPAIGRLSSME-NYYSTAA-AATSSRRFSL 226
           H S S+G  G + G+  WSRP I+++PAIG+L ++E N  +T A A   + RF+L
Sbjct: 165 HISFSNGLTGKMSGYGGWSRPLIDKKPAIGKLPTVEYNVNATIAPAPPRAGRFNL 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832714|emb|CAN74885.1| hypothetical protein VITISV_000223 [Vitis vinifera]

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/248 (49%), Positives = 148/248 (59%), Gaps = 34/248 (13%)

Query: 1   MESLSKDPSPSEASSIIST-------------PEENKVGD-----HEEEAKATLSFDLNL 42
           ME    +P  SE SSIIS              P+E K  +      EE     L  DL+L
Sbjct: 1   MEIPRSEPCLSETSSIISVSEAAPSLNTSMDSPKEGKQQEXQDRNQEELTNPDLVLDLSL 60

Query: 43  DRSDSDDQGFNQELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQ 102
              D + QG   ELNLI+S      SSQ  SE P      P   RVFSCNYCQRKFYSSQ
Sbjct: 61  SSRDLE-QGSRPELNLINSFEM--GSSQNQSEIPQGNEGEP---RVFSCNYCQRKFYSSQ 114

Query: 103 ALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSL 162
           ALGGHQNAHKRERTLAKRGQRIG    A+  AFG P  +   +SS++SLPLHG ++NRSL
Sbjct: 115 ALGGHQNAHKRERTLAKRGQRIG----AASVAFGHPLPNPYRFSSMASLPLHG-SFNRSL 169

Query: 163 GIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYYSTAAAATSSR 222
           GIQ HS+IHKPS  S++     +YGH  WSR PI+QQPAIGRL+    +  +++++  + 
Sbjct: 170 GIQAHSLIHKPSSLSST-----LYGHQGWSRLPIDQQPAIGRLAPENYHVGSSSSSGGAA 224

Query: 223 RFSLVRNM 230
           RF  VR  
Sbjct: 225 RFETVRKF 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443097|ref|XP_002272545.1| PREDICTED: zinc finger protein 1-like [Vitis vinifera]

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/248 (49%), Positives = 148/248 (59%), Gaps = 34/248 (13%)

Query: 1   MESLSKDPSPSEASSIIST-------------PEENKVGD-----HEEEAKATLSFDLNL 42
           ME    +P  SE SSIIS              P+E K  +      EE     L  DL+L
Sbjct: 1   MEIPRSEPCLSETSSIISVSEAAPSLNTSMDSPKEGKQQEGQDRNQEELTNPDLVLDLSL 60

Query: 43  DRSDSDDQGFNQELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQ 102
              D + QG   ELNLI+S      SSQ  SE P      P   RVFSCNYCQRKFYSSQ
Sbjct: 61  SSRDLE-QGSRPELNLINSFEM--GSSQNHSEIPQGNEGEP---RVFSCNYCQRKFYSSQ 114

Query: 103 ALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSL 162
           ALGGHQNAHKRERTLAKRGQRIG    A+  AFG P  +   +SS++SLPLHG ++NRSL
Sbjct: 115 ALGGHQNAHKRERTLAKRGQRIG----AASVAFGHPLPNPYRFSSMASLPLHG-SFNRSL 169

Query: 163 GIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYYSTAAAATSSR 222
           GIQ HS+IHKPS  S++     +YGH  WSR PI+QQPAIGRL+    +  +++++  + 
Sbjct: 170 GIQAHSLIHKPSSLSST-----LYGHQGWSRLPIDQQPAIGRLAPENYHVGSSSSSGGAA 224

Query: 223 RFSLVRNM 230
           RF  VR  
Sbjct: 225 RFETVRKF 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572763|ref|XP_002527314.1| zinc finger protein, putative [Ricinus communis] gi|223533314|gb|EEF35066.1| zinc finger protein, putative [Ricinus communis]

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/218 (53%), Positives = 147/218 (67%), Gaps = 23/218 (10%)

Query: 24  KVGDHEEEAKAT-LSFDLNLDRSDSDDQGFNQELNLIDSLNNTGSSSQISSETPHATNDH 82
           +V   +E+ K   L  DL+L   DS       ELNLID+ +  G S +  S+ PH  N+ 
Sbjct: 50  RVQKQQEDGKHDHLVLDLSLSSKDS-----KAELNLIDTFD-LGPSQKSLSDNPHQGNE- 102

Query: 83  PSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFG-QPYLH 141
            +E RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI    +A+ FA G   + H
Sbjct: 103 -TEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI----SAASFALGHHHHSH 157

Query: 142 QNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTS-HGNGNIYGHNNWSRPPIEQQP 200
            N YSS++SLPLHG + NRSLGIQVHSMIHKP+   +S  G+ N+YG N WSR P +QQP
Sbjct: 158 LNRYSSMASLPLHG-SLNRSLGIQVHSMIHKPTFIQSSILGSSNLYGQNGWSRQPFDQQP 216

Query: 201 AIGRLSSMENYY------STAAAATSSRRFSLVRNMMG 232
           A+GRL+S E+++      +  A   S+R+FS VR  +G
Sbjct: 217 AVGRLAS-ESFHMGSPSGNGVARFESARKFSPVREGIG 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469240|ref|XP_004152329.1| PREDICTED: zinc finger protein 3-like [Cucumis sativus]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/240 (45%), Positives = 145/240 (60%), Gaps = 31/240 (12%)

Query: 1   MESLSKDPSPSEASSIIS-------TPEENKVGDHEEEAKATLSFDLNLDRSDSDDQGFN 53
           M+    +PSPSE S+IIS        P+ ++  D +    + +  DL L  +DSD  G N
Sbjct: 1   MDFPIPEPSPSETSTIISASESSPPCPKGDRTTD-QINPNSHMGLDLTLSNNDSD-HGSN 58

Query: 54  QELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKR 113
            ELNLID  +   ++    +ET         E RVFSCNYCQRKFYSSQALGGHQNAHKR
Sbjct: 59  PELNLIDCFDANLATEPTDTET---------EPRVFSCNYCQRKFYSSQALGGHQNAHKR 109

Query: 114 ERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKP 173
           ERTLAKR QR+G+         G  +   + YSS++SLPLHG ++NRSLGIQ HSM+HKP
Sbjct: 110 ERTLAKRTQRVGS---------GSNFGLAHRYSSLASLPLHG-SFNRSLGIQAHSMVHKP 159

Query: 174 SHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYYST---AAAATSSRRFSLVRNM 230
           S   +  G+  IYGH+ WSR P++Q PAIGRL    ++  +    ++ T + RF  V+  
Sbjct: 160 SLHVSPIGSSGIYGHSGWSRQPLDQHPAIGRLMQGNSHVGSHRGISSTTGAARFEGVKRF 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530598|ref|XP_004172281.1| PREDICTED: zinc finger protein 3-like [Cucumis sativus]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 144/243 (59%), Gaps = 37/243 (15%)

Query: 1   MESLSKDPSPSEASSIIS-------TPEENKVGDHEEEAKATLSFDLNLDRSDSDDQGFN 53
           M+    +PSPSE S+IIS        P+ ++  D +    + +  DL L  +DSD  G N
Sbjct: 1   MDFPIPEPSPSETSTIISASESSPPCPKGDRTTD-QINPNSHMGLDLTLSNNDSD-HGSN 58

Query: 54  QELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKR 113
            ELNLID  +   ++    +ET         E RVFSCNYCQRKFYSSQALGGHQNAHKR
Sbjct: 59  PELNLIDCFDANLATEPTDTET---------EPRVFSCNYCQRKFYSSQALGGHQNAHKR 109

Query: 114 ERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKP 173
           ERTLAKR QR+G+         G  +   + YSS++SLPLHG ++NRSLGIQ HSM+HKP
Sbjct: 110 ERTLAKRTQRVGS---------GSNFGLAHRYSSLASLPLHG-SFNRSLGIQAHSMVHKP 159

Query: 174 SHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRL-------SSMENYYSTAAAA--TSSRRF 224
           S   +  G+  IYGH+ WSR P++Q PAIGRL        S+    S   AA     +RF
Sbjct: 160 SLHVSPIGSSGIYGHSGWSRQPLDQHPAIGRLMQGNSHVGSLRGISSNTGAARFEGVKRF 219

Query: 225 SLV 227
           S V
Sbjct: 220 SPV 222

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2183780	272	AT5G10970 "AT5G10970" [Arabido	0.788	0.683	0.488	1.1e-39
TAIR|locus:2146960	235	ZFP3 "AT5G25160" [Arabidopsis	0.652	0.655	0.519	6.3e-37
TAIR|locus:2025777	228	ZFP1 "AT1G80730" [Arabidopsis	0.580	0.600	0.518	3.8e-30
TAIR|locus:2013820	260	ZFP4 "AT1G66140" [Arabidopsis	0.576	0.523	0.461	1e-22
TAIR|locus:2174547	150	ZFP2 "AT5G57520" [Arabidopsis	0.351	0.553	0.517	2.9e-16
TAIR|locus:2825107	209	ZFP7 "AT1G24625" [Arabidopsis	0.491	0.555	0.370	3.3e-15
TAIR|locus:2159088	161	KNU "AT5G14010" [Arabidopsis t	0.368	0.540	0.418	7.9e-14
TAIR|locus:2095883	253	GIS "AT3G58070" [Arabidopsis t	0.436	0.407	0.439	5.6e-13
TAIR|locus:2156529	173	LATE "LATE FLOWERING" [Arabido	0.415	0.566	0.388	5.6e-13
TAIR|locus:2019723	197	ZFP6 "AT1G67030" [Arabidopsis	0.279	0.335	0.514	8.2e-12

TAIR|locus:2183780 AT5G10970 "AT5G10970" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 102/209 (48%), Positives = 120/209 (57%)

Query:     5 SKDPSPSEASSIISTPEENKVGDHEE-EAKATLSFDLNLDRSDSDDQGFNQELNLIDSLN 63
             S  P  S  +  I T    +  DH++ E    +  DL L   DS     NQELNL+D L 
Sbjct:    26 SDSPKLSLENYNIDTVAAQEEDDHDQKEGVEGIKLDLMLAGYDSSQPQLNQELNLLDCLE 85

Query:    64 NTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQR 123
              TG        TP       +EQ++FSCNYCQR FYSSQALGGHQNAHKRERTLAKRGQR
Sbjct:    86 -TGVV------TPSFNGSTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQR 138

Query:   124 IGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNG 183
             +     AS  AFG PY         + +P HG   NR+LGIQ HSM HKPS  +   G  
Sbjct:   139 M-----ASAAAFGHPY-------GFAPVPFHGQYSNRTLGIQAHSMSHKPSSYNVYGGE- 185

Query:   184 NIYGHNNWSRPPIEQQPAIGRLSSMENYY 212
               YG  NWSR P+ QQPAI +L+S EN+Y
Sbjct:   186 --YGQINWSRIPLVQQPAIAKLTSTENHY 212

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2146960 ZFP3 "AT5G25160" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 92/177 (51%), Positives = 115/177 (64%)

Query:    37 SFDLNLDRSDSDDQGFNQELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQR 96
             S + +++  + D    + ELNLID +++T S   I +E+  +T     EQ++FSCNYCQR
Sbjct:    17 SLNQSIEDEERDVHNSSHELNLIDCIDDTTS---IVNESTTST-----EQKLFSCNYCQR 68

Query:    97 KFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGA 156
              FYSSQALGGHQNAHKRERTLAKRGQR+    AAS  AFG PY         S LP HG 
Sbjct:    69 TFYSSQALGGHQNAHKRERTLAKRGQRM----AASASAFGHPY-------GFSPLPFHGQ 117

Query:   157 AYN-RSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYY 212
               N RSLGIQ HS+ HK    S+ +G G  YG  NWSR P +QQPAIG+  SM+N++
Sbjct:   118 YNNHRSLGIQAHSISHK---LSSYNGFGGHYGQINWSRLPFDQQPAIGKFPSMDNFH 171

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2025777 ZFP1 "AT1G80730" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 84/162 (51%), Positives = 104/162 (64%)

Query:    53 NQELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHK 112
             + ELNLIDS   T SSS  +S   H   +  ++ RVFSCNYCQRKFYSSQALGGHQNAHK
Sbjct:    36 SSELNLIDSFK-TSSSS--TSHHQHQ-QEQLADPRVFSCNYCQRKFYSSQALGGHQNAHK 91

Query:   113 RERTLAKRGQRIGTYTAASP---FAFGQPYLHQNHYSSISSLPLHGAAYNRS-LGIQVHS 168
             RERTLAKRGQ      ++ P   FAFG   +  + ++S++SLPLHG+  NRS LGIQ HS
Sbjct:    92 RERTLAKRGQYYKMTLSSLPSSAFAFGHGSV--SRFASMASLPLHGSVNNRSTLGIQAHS 149

Query:   169 MIHKPSH-----TSTSHGNGNIYGHNNWSRPPIEQQPAIGRL 205
              IHKPS      TS SH    ++      +  I Q+P IG++
Sbjct:   150 TIHKPSFLGRQTTSLSH----VF------KQSIHQKPTIGKM 181

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009640 "photomorphogenesis" evidence=IEP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2013820 ZFP4 "AT1G66140" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 66/143 (46%), Positives = 79/143 (55%)

Query:    40 LNLDRSDSDDQGFNQELNLIDSLNNTGSSSQISSETPHATNDHPS-EQRVFSCNYCQRKF 98
             LNL  S +++   N +L    SL    SS+  SS         PS  +RVFSCNYCQRKF
Sbjct:    36 LNLSLSFNNNNNNNLDLES-SSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKF 94

Query:    99 YSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAY 158
             YSSQALGGHQNAHKRERTLAKR  R+G             Y      +++S LPLHG+  
Sbjct:    95 YSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGN 154

Query:   159 N-----RSLGIQVHSMIHKPSHT 176
                   R+LGI+ HS  H  S T
Sbjct:   155 GNMTSFRTLGIRAHSSAHDVSMT 177

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2174547 ZFP2 "AT5G57520" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 45/87 (51%), Positives = 57/87 (65%)

Query:    53 NQELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHK 112
             N +LNL   L  +  SS  SS T   ++    + RVFSCNYCQRKFYSSQALGGHQNAHK
Sbjct:    18 NHQLNLELVLEPSSMSSSSSSSTN--SSSCLEQPRVFSCNYCQRKFYSSQALGGHQNAHK 75

Query:   113 RERTLAKRGQRIGTYTAASPFAFGQPY 139
              ERTLAK+ + +  + +++     QPY
Sbjct:    76 LERTLAKKSREL--FRSSNTVDSDQPY 100

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2825107 ZFP7 "AT1G24625" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 50/135 (37%), Positives = 70/135 (51%)

Query:    41 NLDRSDSDDQGFNQELNLIDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYS 100
             N D S  +    + +L L D+ N+   S++  +        +P   RVFSCNYC+RKFYS
Sbjct:    22 NQDLSKPESNHVSLDLKLNDTFNDDTKSTKCEA--------NP---RVFSCNYCRRKFYS 70

Query:   101 SQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNR 160
             SQALGGHQNAHKRERT+AKR   +G         FG  +    + SS   +  H    + 
Sbjct:    71 SQALGGHQNAHKRERTMAKRAMHMGRM-------FGHHHRPYTYTSSSLGMQAHSGLLHH 123

Query:   161 SLGIQVHSMIHKPSH 175
             +L  Q   ++ +  H
Sbjct:   124 TLS-QPQPLVSRFHH 137

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2159088 KNU "AT5G14010" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 41/98 (41%), Positives = 56/98 (57%)

Query:    62 LNNTGSSSQISSETPHA--TNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAK 119
             L+  G +   SS   H+  ++ HP+  R+F C YC RKFY+SQALGGHQNAHKRER  A+
Sbjct:     9 LHFVGPAKTRSSSKRHSFSSSAHPASHRLFPCQYCPRKFYTSQALGGHQNAHKRERAAAR 68

Query:   120 RGQRIGTYTAASPF-----AFGQPY--LHQNHYSSISS 150
             R   +G    + P       F +PY   +QN +   +S
Sbjct:    69 RN--LGVLANSPPILDDNNTFLRPYPCFYQNPFQGSTS 104

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010582 "floral meristem determinacy" evidence=IMP

TAIR|locus:2095883 GIS "AT3G58070" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 51/116 (43%), Positives = 61/116 (52%)

Query:    80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPY 139
             N+  S  R F C+YC R F +SQALGGHQNAHKRER LAKRG  + +Y          PY
Sbjct:    82 NNSISHNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKRG--VSSYFYHPD---NNPY 136

Query:   140 LHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPP 195
              ++ HY S ++ PL  A   RS G    S   KPS   T    G+  G   W  PP
Sbjct:   137 SYR-HYPSWTNGPLTAA---RSYG--GFSSGPKPSGYYTRPSYGSQLGL--WRLPP 184

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009739 "response to gibberellin stimulus" evidence=IMP

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010091 "trichome branching" evidence=IMP

TAIR|locus:2156529 LATE "LATE FLOWERING" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 40/103 (38%), Positives = 55/103 (53%)

Query:    73 SETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASP 132
             S+  + T+++ S  R+F C +C RKF+SSQALGGHQNAHK+ERT A+R +R   +   + 
Sbjct:    19 SKEANKTDENTSSLRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFVNNND 78

Query:   133 FAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPSH 175
             F    P       SS S   L    Y  S  +     +H P H
Sbjct:    79 FLHTLPVF----LSSPSQHHLTILGYPASASVACFPTVH-PDH 116

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2019723 ZFP6 "AT1G67030" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 35/68 (51%), Positives = 43/68 (63%)

Query:    59 IDSLNNTGSSSQISSETPHATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLA 118
             I+ L  T   +Q SSE P   +   SE R + C YC R+F +SQALGGHQNAHK+ER L 
Sbjct:    13 INLLETTSVQNQ-SSE-PRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKERQLL 70

Query:   119 KRGQRIGT 126
             KR Q + T
Sbjct:    71 KRAQMLAT 78

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.204.1 hypothetical protein (192 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.7
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.63
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.26
KOG3576	267	consensus Ovo and related transcription factors [T	99.25
KOG3576	267	consensus Ovo and related transcription factors [T	99.2
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.09
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.07
PHA02768	55	hypothetical protein; Provisional	98.72
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	98.69
PHA00733	128	hypothetical protein	98.68
PLN03086	567	PRLI-interacting factor K; Provisional	98.43
KOG3608	467	consensus Zn finger proteins [General function pre	98.38
PHA00616	44	hypothetical protein	98.33
KOG3608	467	consensus Zn finger proteins [General function pre	98.25
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.25
PHA02768	55	hypothetical protein; Provisional	97.94
PLN03086	567	PRLI-interacting factor K; Provisional	97.86
PHA00733	128	hypothetical protein	97.83
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.71
PHA00732	79	hypothetical protein	97.68
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.65
KOG3993	500	consensus Transcription factor (contains Zn finger	97.58
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.55
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.53
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.44
PHA00616	44	hypothetical protein	97.39
PHA00732	79	hypothetical protein	97.29
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.12
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.04
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.97
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.9
smart00355	26	ZnF_C2H2 zinc finger.	96.69
smart00355	26	ZnF_C2H2 zinc finger.	96.66
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.44
PRK04860	160	hypothetical protein; Provisional	96.35
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.05
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.71
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.53
KOG3993	500	consensus Transcription factor (contains Zn finger	94.89
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.88
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	94.55
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.25
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.17
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	93.47
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	93.4
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.08
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.65
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	90.98
COG5048	467	FOG: Zn-finger [General function prediction only]	89.77
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	88.26
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	87.96
COG5048	467	FOG: Zn-finger [General function prediction only]	87.87
KOG1146	1406	consensus Homeobox protein [General function predi	85.33
COG5189	423	SFP1 Putative transcriptional repressor regulating	85.05
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	83.0

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.70  E-value=9.1e-18  Score=142.84  Aligned_cols=92  Identities=23%  Similarity=0.364  Sum_probs=50.4

Q ss_pred             CceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCcCCCC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGAAYNR  160 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk~F~~  160 (236)
                      .+.|.|++|+|.|.+..+|..|+|+|+  -|++|.  .|||       +|.++  |+.|+|+|   |||.|+.|+|+|..
T Consensus       159 ~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~--iCGK-------aFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD  227 (279)
T KOG2462|consen  159 KKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECG--ICGK-------AFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD  227 (279)
T ss_pred             cccccCCCCCceeeehHHHhhHhhccC--CCcccc--cccc-------cccchHHhhcccccccCCCCccCCcccchhcc
Confidence            344555555555555555555555555  355555  5555       44443  35555555   55555555555555


Q ss_pred             hhhhHHHhhhcCCCCCCCCCCCCCCCCC
Q 044109          161 SLGIQVHSMIHKPSHTSTSHGNGNIYGH  188 (236)
Q Consensus       161 ~~~L~~H~~~HkP~~~~~~~~~g~~~~~  188 (236)
                      +++|+.|+++|-......|..||+.|..
T Consensus       228 RSNLRAHmQTHS~~K~~qC~~C~KsFsl  255 (279)
T KOG2462|consen  228 RSNLRAHMQTHSDVKKHQCPRCGKSFAL  255 (279)
T ss_pred             hHHHHHHHHhhcCCccccCcchhhHHHH
Confidence            5555555555554445555555555543

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.63  E-value=6.7e-17  Score=137.58  Aligned_cols=124  Identities=13%  Similarity=0.232  Sum_probs=112.3

Q ss_pred             CCceeecccccccccCchhhhhhhhccCC---CCCCccCcCCCCCccCCCCcccCCc--cccccccc-CCCCCCCCCcCC
Q 044109           85 EQRVFSCNYCQRKFYSSQALGGHQNAHKR---ERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS-SISSLPLHGAAY  158 (236)
Q Consensus        85 gekpf~C~~C~k~F~~~~~L~~H~r~Htg---ekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h-kp~~C~~Cgk~F  158 (236)
                      ..-.|.|..|||.+.+.++|.+|+.+|..   .+.+.|+  .|+|       .|...  |+.|.|+| -+++|.+|||.|
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~--~C~K-------~YvSmpALkMHirTH~l~c~C~iCGKaF  197 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCK--YCGK-------VYVSMPALKMHIRTHTLPCECGICGKAF  197 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCC--CCCc-------eeeehHHHhhHhhccCCCcccccccccc
Confidence            44579999999999999999999999985   5789999  9999       55554  69999999 599999999999


Q ss_pred             CChhhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCccccccchhhhhccc
Q 044109          159 NRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIGRLSSMENYYSTAAAA  218 (236)
Q Consensus       159 ~~~~~L~~H~~~HkP~~~~~~~~~g~~~~~~~~~r~~~~~qp~~~~l~~~~~~~~~~~~~  218 (236)
                      .++.-|+.|+|+|.+++++.|..||+.|....-+|.+|..+-++-++. ...+..++++-
T Consensus       198 SRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~q-C~~C~KsFsl~  256 (279)
T KOG2462|consen  198 SRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQ-CPRCGKSFALK  256 (279)
T ss_pred             cchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCcccc-CcchhhHHHHH
Confidence            999999999999999999999999999999899999998889999998 88888887765

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.26  E-value=1.4e-12  Score=122.95  Aligned_cols=78  Identities=15%  Similarity=0.244  Sum_probs=72.2

Q ss_pred             CCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCcC
Q 044109           83 PSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGAA  157 (236)
Q Consensus        83 htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk~  157 (236)
                      -+.+-+|.|+.|.|.|.-.+.|.+|.--|+|.|||+|.  +|.|       +|.++  |..|+|.|   |||+|..|+|+
T Consensus       889 kte~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~--iCkK-------AFKHKHHLtEHkRLHSGEKPfQCdKClKR  959 (1007)
T KOG3623|consen  889 KTEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCI--ICKK-------AFKHKHHLTEHKRLHSGEKPFQCDKCLKR  959 (1007)
T ss_pred             cCccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccc--hhhH-------hhhhhhhhhhhhhhccCCCcchhhhhhhh
Confidence            45678999999999999999999999999999999999  9999       77766  59999999   99999999999


Q ss_pred             CCChhhhHHHhh
Q 044109          158 YNRSLGIQVHSM  169 (236)
Q Consensus       158 F~~~~~L~~H~~  169 (236)
                      |..+.....||.
T Consensus       960 FSHSGSYSQHMN  971 (1007)
T KOG3623|consen  960 FSHSGSYSQHMN  971 (1007)
T ss_pred             cccccchHhhhc
Confidence            999999999974

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.25  E-value=1e-12  Score=107.63  Aligned_cols=81  Identities=20%  Similarity=0.362  Sum_probs=74.1

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcc--ccccccc---CCCCCCCCCc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPY--LHQNHYS---SISSLPLHGA  156 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~--~~H~r~h---kp~~C~~Cgk  156 (236)
                      .-.+...|.|.+|+|+|.....|.+|+..|...|.|.|.  .|||       .|...+  ++|+|+|   +||+|..|+|
T Consensus       111 sssd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct--~cgk-------gfndtfdlkrh~rthtgvrpykc~~c~k  181 (267)
T KOG3576|consen  111 SSSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCT--FCGK-------GFNDTFDLKRHTRTHTGVRPYKCSLCEK  181 (267)
T ss_pred             CCCCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHh--hccC-------cccchhhhhhhhccccCccccchhhhhH
Confidence            344567899999999999999999999999999999999  9999       888774  9999999   9999999999


Q ss_pred             CCCChhhhHHHh-hhc
Q 044109          157 AYNRSLGIQVHS-MIH  171 (236)
Q Consensus       157 ~F~~~~~L~~H~-~~H  171 (236)
                      +|+++-.|..|. ++|
T Consensus       182 aftqrcsleshl~kvh  197 (267)
T KOG3576|consen  182 AFTQRCSLESHLKKVH  197 (267)
T ss_pred             HHHhhccHHHHHHHHc
Confidence            999999999995 667

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.20  E-value=2.6e-12  Score=105.22  Aligned_cols=86  Identities=19%  Similarity=0.232  Sum_probs=73.7

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--ccccc-ccc-----------
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQN-HYS-----------  146 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~-r~h-----------  146 (236)
                      ..|...|.|-|..|||.|...-.|++|+|+|||.|||+|.  .|+|       +|.+.  +..|. ++|           
T Consensus       138 kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~--~c~k-------aftqrcsleshl~kvhgv~~~yayker  208 (267)
T KOG3576|consen  138 KCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCS--LCEK-------AFTQRCSLESHLKKVHGVQHQYAYKER  208 (267)
T ss_pred             hhccHHHHHHHhhccCcccchhhhhhhhccccCccccchh--hhhH-------HHHhhccHHHHHHHHcCchHHHHHHHh
Confidence            4688889999999999999999999999999999999999  9999       77765  33332 122           


Q ss_pred             --CCCCCCCCCcCCCChhhhHHHhhhcCCCC
Q 044109          147 --SISSLPLHGAAYNRSLGIQVHSMIHKPSH  175 (236)
Q Consensus       147 --kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~  175 (236)
                        |.|.|..||..-.+...+..|.+.|.|..
T Consensus       209 r~kl~vcedcg~t~~~~e~~~~h~~~~hp~S  239 (267)
T KOG3576|consen  209 RAKLYVCEDCGYTSERPEVYYLHLKLHHPFS  239 (267)
T ss_pred             hhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence              88999999998888889999999998764

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.09  E-value=1.6e-11  Score=115.98  Aligned_cols=109  Identities=17%  Similarity=0.255  Sum_probs=89.3

Q ss_pred             eeecccccccccCchhhhhhhhc-c-CCCCCCccCcCCCCCccCCCCcccCCccccccccc----------------CCC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNA-H-KRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYS----------------SIS  149 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~-H-tgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~h----------------kp~  149 (236)
                      ...|.||.+.+.+.+.|+.|+.. | ..|-.|.|.  .|..     +|++...|.+|+.+|                +.|
T Consensus       210 lltcpycdrgykrltslkeHikyrhekne~nfsC~--lCsy-----tFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKF  282 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCM--LCSY-----TFAYRTQLERHMQLHKPGGDQAISLTQSALLRKF  282 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcch--hhhh-----hhhhHHHHHHHHHhhcCCCcccccccchhhhccc
Confidence            35899999999999999999864 3 346679999  9988     445555567777665                679


Q ss_pred             CCCCCCcCCCChhhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q 044109          150 SLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPPIEQQPAIG  203 (236)
Q Consensus       150 ~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~~~~~g~~~~~~~~~r~~~~~qp~~~  203 (236)
                      +|++|||+|..+.+|+.|.|||.+.+++.|.-|+++|.|.|....+|...-=|+
T Consensus       283 KCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSKKCIs  336 (1007)
T KOG3623|consen  283 KCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSKKCIS  336 (1007)
T ss_pred             cccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccccchhh
Confidence            999999999999999999999999999999999999999887777775544443

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.07  E-value=7.5e-11  Score=113.01  Aligned_cols=81  Identities=20%  Similarity=0.246  Sum_probs=71.1

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCccccccccc-------CCCCCC---CCCc
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYS-------SISSLP---LHGA  156 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~h-------kp~~C~---~Cgk  156 (236)
                      .|-+|-+|.|.....++|+.|.|+|+|||||+|+  +||+     +|.-...|+.|+-+|       -++.||   +|-+
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCK--iCgR-----AFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~  676 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCK--ICGR-----AFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQK  676 (958)
T ss_pred             CccceeeeeecccchhhhhhhhhcccCcCccccc--cccc-----hhccccchhhcccccccCccccccccCCchhhhcc
Confidence            4679999999999999999999999999999999  9999     233344579999888       458999   9999


Q ss_pred             CCCChhhhHHHhhhcCCC
Q 044109          157 AYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       157 ~F~~~~~L~~H~~~HkP~  174 (236)
                      .|.....|..|.++|-+.
T Consensus       677 kftn~V~lpQhIriH~~~  694 (958)
T KOG1074|consen  677 KFTNAVTLPQHIRIHLGG  694 (958)
T ss_pred             cccccccccceEEeecCC
Confidence            999999999999999643

>PHA02768 hypothetical protein; Provisional

Probab=98.72  E-value=5.7e-09  Score=68.64  Aligned_cols=35  Identities=14%  Similarity=0.338  Sum_probs=33.2

Q ss_pred             eeecccccccccCchhhhhhhhccCCCCCCccCcCCCCC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k  126 (236)
                      -|+|++||+.|...++|.+|+++|+  +||+|.  .|++
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~--~C~k   39 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLS--NCKR   39 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCC--cccc
Confidence            4899999999999999999999999  799999  9999

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=98.69  E-value=1.2e-08  Score=98.24  Aligned_cols=76  Identities=24%  Similarity=0.333  Sum_probs=57.7

Q ss_pred             eecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCChhhhHHHh
Q 044109           89 FSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHS  168 (236)
Q Consensus        89 f~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~~~~L~~H~  168 (236)
                      ..|.+|++.|..+.+|..|+|+|+|+|||.|.  .|                              ++.|..+.+|+.||
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~--fC------------------------------~~aFttrgnLKvHM  927 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCH--FC------------------------------EEAFTTRGNLKVHM  927 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccch--hh------------------------------hhhhhhhhhhhhhh
Confidence            68999999999999999999999999998888  54                              55688899999999


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 044109          169 MIHKPSHTSTSHGNGNIYGHNNWSRPPI  196 (236)
Q Consensus       169 ~~HkP~~~~~~~~~g~~~~~~~~~r~~~  196 (236)
                      .+|.-...+...|+....++.+..-.+|
T Consensus       928 gtH~w~q~~srrG~~~~~~~~~vs~~~~  955 (958)
T KOG1074|consen  928 GTHMWVQPPSRRGPSPFIGSTGVSPFPM  955 (958)
T ss_pred             ccccccCCCccCCCCcccCCCCCCcccc
Confidence            9995444444334444444544444444

>PHA00733 hypothetical protein

Probab=98.68  E-value=8.7e-09  Score=80.18  Aligned_cols=78  Identities=14%  Similarity=0.125  Sum_probs=63.9

Q ss_pred             CCceeecccccccccCchhhhhh--h---hccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc-CCCCCCCCCc
Q 044109           85 EQRVFSCNYCQRKFYSSQALGGH--Q---NAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS-SISSLPLHGA  156 (236)
Q Consensus        85 gekpf~C~~C~k~F~~~~~L~~H--~---r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h-kp~~C~~Cgk  156 (236)
                      ..+++.|.+|.+.|...+.|..|  .   ..+.+++||.|.  .|++       .|...  +..|++++ .+|.|+.|++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~--~Cgk-------~Fss~s~L~~H~r~h~~~~~C~~CgK  107 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCP--LCLM-------PFSSSVSLKQHIRYTEHSKVCPVCGK  107 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCC--CCCC-------cCCCHHHHHHHHhcCCcCccCCCCCC
Confidence            46889999999999988877766  1   123458999999  9999       66665  47888876 7899999999


Q ss_pred             CCCChhhhHHHhhhc
Q 044109          157 AYNRSLGIQVHSMIH  171 (236)
Q Consensus       157 ~F~~~~~L~~H~~~H  171 (236)
                      .|.....|..|+...
T Consensus       108 ~F~~~~sL~~H~~~~  122 (128)
T PHA00733        108 EFRNTDSTLDHVCKK  122 (128)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999998653

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.43  E-value=1.7e-07  Score=88.75  Aligned_cols=91  Identities=14%  Similarity=0.238  Sum_probs=72.7

Q ss_pred             CCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc-cccccccc---CCCCCCCCCcCCCC
Q 044109           85 EQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP-YLHQNHYS---SISSLPLHGAAYNR  160 (236)
Q Consensus        85 gekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~-~~~H~r~h---kp~~C~~Cgk~F~~  160 (236)
                      .++++.|.+|++.|. ...|..|+++|+  +|+.|.   |++       .+... +..|++.|   +++.|+.|++.|..
T Consensus       450 l~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp---Cg~-------~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~~  516 (567)
T PLN03086        450 AKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP---CGV-------VLEKEQMVQHQASTCPLRLITCRFCGDMVQA  516 (567)
T ss_pred             cccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC---CCC-------CcchhHHHhhhhccCCCCceeCCCCCCcccc
Confidence            356789999999996 678999999985  899997   997       34333 57888877   99999999998852


Q ss_pred             ----------hhhhHHHhhhcCCCCCCCCCCCCCCCCCC
Q 044109          161 ----------SLGIQVHSMIHKPSHTSTSHGNGNIYGHN  189 (236)
Q Consensus       161 ----------~~~L~~H~~~HkP~~~~~~~~~g~~~~~~  189 (236)
                                ..+|..|..++ +.....|..||+.+...
T Consensus       517 g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr  554 (567)
T PLN03086        517 GGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK  554 (567)
T ss_pred             CccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh
Confidence                      35799998886 88888899999766543

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=98.38  E-value=8.9e-08  Score=84.57  Aligned_cols=83  Identities=12%  Similarity=0.165  Sum_probs=68.3

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc------CCCCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS------SISSLPL  153 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h------kp~~C~~  153 (236)
                      .|...|||+|+.|.+.|.+.+.|.+|..+|. +-.|.|+++.|..       .+...  +++|++.+      -+|.|-.
T Consensus       286 rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~-------s~r~~~q~~~H~~evhEg~np~~Y~CH~  357 (467)
T KOG3608|consen  286 RHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHY-------SVRTYTQMRRHFLEVHEGNNPILYACHC  357 (467)
T ss_pred             hhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcH-------HHHHHHHHHHHHHHhccCCCCCceeeec
Confidence            5788999999999999999999999999998 6789999777987       44332  35665543      7899999


Q ss_pred             CCcCCCChhhhHHHhh-hcC
Q 044109          154 HGAAYNRSLGIQVHSM-IHK  172 (236)
Q Consensus       154 Cgk~F~~~~~L~~H~~-~Hk  172 (236)
                      |.+.|++-.+|.+|.+ .|.
T Consensus       358 Cdr~ft~G~~L~~HL~kkH~  377 (467)
T KOG3608|consen  358 CDRFFTSGKSLSAHLMKKHG  377 (467)
T ss_pred             chhhhccchhHHHHHHHhhc
Confidence            9999999999999965 453

>PHA00616 hypothetical protein

Probab=98.33  E-value=1.3e-07  Score=59.36  Aligned_cols=33  Identities=15%  Similarity=0.337  Sum_probs=32.0

Q ss_pred             eeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ||+|..||+.|...+.|..|++.|+|++++.|.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            699999999999999999999999999999987

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=98.25  E-value=2.2e-07  Score=82.15  Aligned_cols=88  Identities=14%  Similarity=0.167  Sum_probs=62.9

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCC--CCCCccCcCCCCCccCCCCc-------------------cc--CCc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKR--ERTLAKRGQRIGTYTAASPF-------------------AF--GQP  138 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htg--ekp~~C~~~~C~k~~~~~~~-------------------~f--~~~  138 (236)
                      +|+++|...|..||+-|.+...|-.|.|..+.  ..+|.|.  .|-|+|++.-.                   ..  ...
T Consensus       201 ~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~--~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ss  278 (467)
T KOG3608|consen  201 THSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCA--QCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASS  278 (467)
T ss_pred             hcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHH--HHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHH
Confidence            68888888888888888888888777664442  3466666  66665443211                   22  222


Q ss_pred             cccccccc----CCCCCCCCCcCCCChhhhHHHhhhc
Q 044109          139 YLHQNHYS----SISSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       139 ~~~H~r~h----kp~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      |.+|+|+.    |||+|..|.+.|.+-+.|.+|..+|
T Consensus       279 L~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~H  315 (467)
T KOG3608|consen  279 LTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVH  315 (467)
T ss_pred             HHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhc
Confidence            47777764    9999999999999999999998888

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.25  E-value=3.6e-07  Score=51.22  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             hhhhhhhccCCCCCCccCcCCCCC
Q 044109          103 ALGGHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       103 ~L~~H~r~Htgekp~~C~~~~C~k  126 (236)
                      +|.+|+++|+|+|||.|.  .|++
T Consensus         1 ~l~~H~~~H~~~k~~~C~--~C~k   22 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCP--YCGK   22 (26)
T ss_dssp             HHHHHHHHHSSSSSEEES--SSSE
T ss_pred             CHHHHhhhcCCCCCCCCC--CCcC
Confidence            588999999999999999  9999

...

>PHA02768 hypothetical protein; Provisional

Probab=97.94  E-value=2.2e-06  Score=56.46  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=15.6

Q ss_pred             CCCCCCCcCCCChhhhHHHhhhcC
Q 044109          149 SSLPLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       149 ~~C~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      |.|+.||+.|.+...|..|+++|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC
Confidence            556666666666666666666664

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.86  E-value=7.3e-06  Score=77.77  Aligned_cols=80  Identities=15%  Similarity=0.187  Sum_probs=59.6

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcc--c---CCccccccccc--CCCCCCCCCcCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFA--F---GQPYLHQNHYS--SISSLPLHGAAYN  159 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~--f---~~~~~~H~r~h--kp~~C~~Cgk~F~  159 (236)
                      ++|.|+ |++.| ....|..|+++|..+||+.|.  .|++.+......  +   ...+..|..+.  +++.|..||+.|.
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~--fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vr  552 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCR--FCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVM  552 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhhccCCCCceeCC--CCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeee
Confidence            789999 99765 668999999999999999999  999932110000  0   11347787776  9999999999775


Q ss_pred             ChhhhHHHh-hhc
Q 044109          160 RSLGIQVHS-MIH  171 (236)
Q Consensus       160 ~~~~L~~H~-~~H  171 (236)
                      . ..|..|+ .+|
T Consensus       553 l-rdm~~H~~~~h  564 (567)
T PLN03086        553 L-KEMDIHQIAVH  564 (567)
T ss_pred             e-hhHHHHHHHhh
Confidence            4 5778885 445

>PHA00733 hypothetical protein

Probab=97.83  E-value=8.2e-06  Score=63.49  Aligned_cols=50  Identities=22%  Similarity=0.296  Sum_probs=41.5

Q ss_pred             CCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--ccccc
Q 044109           83 PSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQN  143 (236)
Q Consensus        83 htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~  143 (236)
                      +.+.+||.|..|++.|.+...|..|+++|  +++|.|.  .|++       .|...  +..|+
T Consensus        68 ~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~--~CgK-------~F~~~~sL~~H~  119 (128)
T PHA00733         68 SKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCP--VCGK-------EFRNTDSTLDHV  119 (128)
T ss_pred             cCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCC--CCCC-------ccCCHHHHHHHH
Confidence            34589999999999999999999999987  4689999  9999       66554  35554

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.71  E-value=1.3e-05  Score=43.22  Aligned_cols=23  Identities=30%  Similarity=0.700  Sum_probs=21.7

Q ss_pred             eecccccccccCchhhhhhhhcc
Q 044109           89 FSCNYCQRKFYSSQALGGHQNAH  111 (236)
Q Consensus        89 f~C~~C~k~F~~~~~L~~H~r~H  111 (236)
                      |+|.+|++.|.+...|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00732 hypothetical protein

Probab=97.68  E-value=2.5e-05  Score=55.61  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=30.1

Q ss_pred             eeecccccccccCchhhhhhhhc-cCCCCCCccCcCCCCC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNA-HKRERTLAKRGQRIGT  126 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~-Htgekp~~C~~~~C~k  126 (236)
                      ||.|..|++.|.+...|..|++. |++   +.|.  .|++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~--~CgK   35 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCP--VCNK   35 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccC--CCCC
Confidence            68999999999999999999984 663   5799  9999

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.65  E-value=1.3e-05  Score=43.20  Aligned_cols=23  Identities=17%  Similarity=0.379  Sum_probs=21.4

Q ss_pred             CCCCCCCcCCCChhhhHHHhhhc
Q 044109          149 SSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       149 ~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      |.|+.|++.|..+..|+.|+++|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            67999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=97.58  E-value=1e-05  Score=73.13  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=22.6

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhhc
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      .|.|..|+|.|.+...|+.|+.+|
T Consensus       356 i~~C~~C~KkFrRqAYLrKHqlth  379 (500)
T KOG3993|consen  356 IFSCHTCGKKFRRQAYLRKHQLTH  379 (500)
T ss_pred             eeecHHhhhhhHHHHHHHHhHHhh
Confidence            488999999999999999999988

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.55  E-value=4.1e-05  Score=67.12  Aligned_cols=71  Identities=14%  Similarity=0.275  Sum_probs=45.7

Q ss_pred             CCceeeccc--ccccccCchhhhhhhhc-cCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCCh
Q 044109           85 EQRVFSCNY--CQRKFYSSQALGGHQNA-HKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRS  161 (236)
Q Consensus        85 gekpf~C~~--C~k~F~~~~~L~~H~r~-Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~~  161 (236)
                      ++|||+|++  |.|++...-.|+-|+.- |...+...-+  .-.+   .  -.|.-       .-|||.|++|+|+|..-
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p--~p~~---~--~~F~~-------~~KPYrCevC~KRYKNl  411 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP--SPEK---M--NIFSA-------KDKPYRCEVCDKRYKNL  411 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCC--Cccc---c--ccccc-------cCCceeccccchhhccC
Confidence            359999986  99999999888888642 3222222211  1111   0  01100       01999999999999999


Q ss_pred             hhhHHHhh
Q 044109          162 LGIQVHSM  169 (236)
Q Consensus       162 ~~L~~H~~  169 (236)
                      .+|+-|..
T Consensus       412 NGLKYHr~  419 (423)
T COG5189         412 NGLKYHRK  419 (423)
T ss_pred             ccceeccc
Confidence            99988853

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.53  E-value=2.6e-05  Score=43.60  Aligned_cols=19  Identities=21%  Similarity=0.786  Sum_probs=17.5

Q ss_pred             CCCCCceeecccccccccC
Q 044109           82 HPSEQRVFSCNYCQRKFYS  100 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~  100 (236)
                      +|+++|||.|++|++.|.+
T Consensus         8 ~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    8 THTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHSSSSSEEESSSSEEESS
T ss_pred             hcCCCCCCCCCCCcCeeCc
Confidence            6999999999999999974

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.44  E-value=6.2e-05  Score=42.13  Aligned_cols=26  Identities=35%  Similarity=0.662  Sum_probs=24.0

Q ss_pred             eeecccccccccCchhhhhhhhccCC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNAHKR  113 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~Htg  113 (236)
                      ||+|..|++.|.+...|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            69999999999999999999998853

>PHA00616 hypothetical protein

Probab=97.39  E-value=7e-05  Score=47.04  Aligned_cols=28  Identities=7%  Similarity=0.106  Sum_probs=25.0

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhhcCCCC
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMIHKPSH  175 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~HkP~~  175 (236)
                      ||+|+.||+.|.++..|.+|++.|....
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~   28 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQN   28 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCC
Confidence            7999999999999999999999886543

>PHA00732 hypothetical protein

Probab=97.29  E-value=0.00013  Score=51.89  Aligned_cols=43  Identities=9%  Similarity=0.110  Sum_probs=23.8

Q ss_pred             CCccCcCCCCCccCCCCcccCCc--cccccc-ccCCCCCCCCCcCCCChhhhHHHhhh
Q 044109          116 TLAKRGQRIGTYTAASPFAFGQP--YLHQNH-YSSISSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       116 p~~C~~~~C~k~~~~~~~~f~~~--~~~H~r-~hkp~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      ||.|.  .|++       .|.+.  +..|++ .|.++.|+.||+.|.   .|..|.++
T Consensus         1 py~C~--~Cgk-------~F~s~s~Lk~H~r~~H~~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCP--ICGF-------TTVTLFALKQHARRNHTLTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCC--CCCC-------ccCCHHHHHHHhhcccCCCccCCCCCEeC---Chhhhhcc
Confidence            45666  6666       44433  355655 345566666666665   35555543

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.12  E-value=0.00019  Score=38.37  Aligned_cols=23  Identities=35%  Similarity=0.753  Sum_probs=19.7

Q ss_pred             eecccccccccCchhhhhhhhcc
Q 044109           89 FSCNYCQRKFYSSQALGGHQNAH  111 (236)
Q Consensus        89 f~C~~C~k~F~~~~~L~~H~r~H  111 (236)
                      |.|.+|++.|.+...|..|+++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            78999999999999999999876

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.04  E-value=0.00026  Score=51.47  Aligned_cols=70  Identities=14%  Similarity=0.189  Sum_probs=21.9

Q ss_pred             ecccccccccCchhhhhhhhccCCC-CCCccCcCCCCCccCCCCcccCCcccccc--cccCCCCCCCCCcCCCChhhhHH
Q 044109           90 SCNYCQRKFYSSQALGGHQNAHKRE-RTLAKRGQRIGTYTAASPFAFGQPYLHQN--HYSSISSLPLHGAAYNRSLGIQV  166 (236)
Q Consensus        90 ~C~~C~k~F~~~~~L~~H~r~Htge-kp~~C~~~~C~k~~~~~~~~f~~~~~~H~--r~hkp~~C~~Cgk~F~~~~~L~~  166 (236)
                      +|.+|+..|.....|..|+....+- .+ ...  .+         .....+..+.  .+...+.|..|++.|.....|+.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-~~~--~l---------~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~   68 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-DQK--YL---------VDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQE   68 (100)
T ss_dssp             ------------------------------------------------------------SSEEBSSSS-EESSHHHHHH
T ss_pred             Cccccccccccccccccccccccccccc-ccc--cc---------ccccccccccccccCCCCCCCccCCCCcCHHHHHH
Confidence            5999999999999999998654432 22 111  00         0001111111  12256899999999999999999


Q ss_pred             Hhhhc
Q 044109          167 HSMIH  171 (236)
Q Consensus       167 H~~~H  171 (236)
                      |++.+
T Consensus        69 Hm~~~   73 (100)
T PF12756_consen   69 HMRSK   73 (100)
T ss_dssp             HHHHT
T ss_pred             HHcCc
Confidence            99875

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.97  E-value=0.00027  Score=37.80  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=19.3

Q ss_pred             CCCCCCCcCCCChhhhHHHhhhc
Q 044109          149 SSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       149 ~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      |.|++|++.|.....|+.|+++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            67999999999999999999875

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.90  E-value=0.00038  Score=38.85  Aligned_cols=25  Identities=12%  Similarity=0.077  Sum_probs=23.2

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhhcC
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      ||.|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6889999999999999999999885

>smart00355 ZnF_C2H2 zinc finger

Probab=96.69  E-value=0.0012  Score=35.56  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=21.9

Q ss_pred             CCCCCCCcCCCChhhhHHHhhhcC
Q 044109          149 SSLPLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       149 ~~C~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      |.|+.|++.|.....|..|+++|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            679999999999999999998774

>smart00355 ZnF_C2H2 zinc finger

Probab=96.66  E-value=0.00082  Score=36.31  Aligned_cols=25  Identities=32%  Similarity=0.628  Sum_probs=22.5

Q ss_pred             eecccccccccCchhhhhhhhccCC
Q 044109           89 FSCNYCQRKFYSSQALGGHQNAHKR  113 (236)
Q Consensus        89 f~C~~C~k~F~~~~~L~~H~r~Htg  113 (236)
                      |.|..|++.|.....|..|++.|..
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~~   25 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHXX   25 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhcc
Confidence            6899999999999999999997753

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.44  E-value=0.00097  Score=43.81  Aligned_cols=32  Identities=28%  Similarity=0.671  Sum_probs=21.8

Q ss_pred             eeecccccccccCchhhhhhhhc-cCCC-CCCccC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNA-HKRE-RTLAKR  120 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~-Htge-kp~~C~  120 (236)
                      .|.|++|++. .+...|..|... |..+ +.+.|+
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CP   35 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCP   35 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCC
Confidence            4889999994 556789999654 5543 334444

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PRK04860 hypothetical protein; Provisional

Probab=96.35  E-value=0.002  Score=52.00  Aligned_cols=34  Identities=24%  Similarity=0.460  Sum_probs=31.1

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k  126 (236)
                      -+|.|. |++   ....+.+|.++|+++++|.|.  .|+.
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~--~C~~  151 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCR--RCGE  151 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECC--CCCc
Confidence            479998 998   667789999999999999999  9998

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.05  E-value=0.0052  Score=39.66  Aligned_cols=35  Identities=14%  Similarity=0.301  Sum_probs=25.4

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERT  116 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp  116 (236)
                      .+..+.|-.|++|+..+.+..+|.+|+.++.+.||
T Consensus        18 ~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   18 KSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            45567899999999999999999999988877776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.71  E-value=0.004  Score=33.91  Aligned_cols=23  Identities=30%  Similarity=0.736  Sum_probs=21.2

Q ss_pred             eecccccccccCchhhhhhhhcc
Q 044109           89 FSCNYCQRKFYSSQALGGHQNAH  111 (236)
Q Consensus        89 f~C~~C~k~F~~~~~L~~H~r~H  111 (236)
                      |.|..|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            78999999999999999999865

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.53  E-value=0.0079  Score=38.85  Aligned_cols=30  Identities=20%  Similarity=0.325  Sum_probs=20.4

Q ss_pred             cccccCCCCCCCCCcCCCChhhhHHHhhhc
Q 044109          142 QNHYSSISSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       142 H~r~hkp~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      |++...|..||+|+..+.+.-+|++|+.++
T Consensus        18 ~~~S~~PatCP~C~a~~~~srnLrRHle~~   47 (54)
T PF09237_consen   18 KSQSEQPATCPICGAVIRQSRNLRRHLEIR   47 (54)
T ss_dssp             CCTTS--EE-TTT--EESSHHHHHHHHHHH
T ss_pred             hhccCCCCCCCcchhhccchhhHHHHHHHH
Confidence            333338999999999999999999999665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=94.89  E-value=0.0056  Score=55.85  Aligned_cols=49  Identities=10%  Similarity=0.170  Sum_probs=36.8

Q ss_pred             CccCcCCCCCccCCCCcccCCcc--cccc--cc-cCCCCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          117 LAKRGQRIGTYTAASPFAFGQPY--LHQN--HY-SSISSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       117 ~~C~~~~C~k~~~~~~~~f~~~~--~~H~--r~-hkp~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      |.|+  .|.-       .|...+  ..|.  |+ |--|.|++|+|+|+-+.+|..|.|-|||.
T Consensus       268 yiCq--LCK~-------kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR  321 (500)
T KOG3993|consen  268 YICQ--LCKE-------KYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPR  321 (500)
T ss_pred             HHHH--HHHH-------hhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCc
Confidence            7788  8876       444442  3443  22 36799999999999999999999999764

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.88  E-value=0.011  Score=32.96  Aligned_cols=22  Identities=32%  Similarity=0.703  Sum_probs=20.5

Q ss_pred             eecccccccccCchhhhhhhhc
Q 044109           89 FSCNYCQRKFYSSQALGGHQNA  110 (236)
Q Consensus        89 f~C~~C~k~F~~~~~L~~H~r~  110 (236)
                      |.|..|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=94.55  E-value=0.013  Score=38.37  Aligned_cols=45  Identities=9%  Similarity=0.098  Sum_probs=29.7

Q ss_pred             CCccCcCCCCCccCCCCcccCCc-cccccc-cc----CCCCCCCCCcCCCChhhhHHHhhhc
Q 044109          116 TLAKRGQRIGTYTAASPFAFGQP-YLHQNH-YS----SISSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       116 p~~C~~~~C~k~~~~~~~~f~~~-~~~H~r-~h----kp~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      .|.|+  .|++       .|... |..|.. .|    +.+.||+|...+.  .+|..|+.++
T Consensus         2 ~f~CP--~C~~-------~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~   52 (54)
T PF05605_consen    2 SFTCP--YCGK-------GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQ   52 (54)
T ss_pred             CcCCC--CCCC-------ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence            47888  8988       44433 444432 23    6788999988654  3788887654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.25  E-value=0.014  Score=31.52  Aligned_cols=24  Identities=17%  Similarity=0.202  Sum_probs=18.3

Q ss_pred             CCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          149 SSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       149 ~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      |.|+.|..... ...|..|+++|.|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            67999998877 8899999988643

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.17  E-value=0.016  Score=31.46  Aligned_cols=23  Identities=4%  Similarity=0.044  Sum_probs=20.5

Q ss_pred             CCCCCCCcCCCChhhhHHHhhhc
Q 044109          149 SSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       149 ~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      |.|.+|++.|.....|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            57999999999999999998764

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=93.47  E-value=0.036  Score=30.49  Aligned_cols=21  Identities=33%  Similarity=0.749  Sum_probs=17.5

Q ss_pred             eecccccccccCchhhhhhhhc
Q 044109           89 FSCNYCQRKFYSSQALGGHQNA  110 (236)
Q Consensus        89 f~C~~C~k~F~~~~~L~~H~r~  110 (236)
                      ..|..|+++| ....|.+|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 67789999764

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=93.40  E-value=0.032  Score=29.99  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=18.1

Q ss_pred             eecccccccccCchhhhhhhhccC
Q 044109           89 FSCNYCQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        89 f~C~~C~k~F~~~~~L~~H~r~Ht  112 (236)
                      |+|..|..... ...|..|++.|.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            78999998887 889999998753

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.08  E-value=0.04  Score=30.62  Aligned_cols=22  Identities=5%  Similarity=-0.084  Sum_probs=19.8

Q ss_pred             CCCCCCCcCCCChhhhHHHhhh
Q 044109          149 SSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       149 ~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      |-|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6799999999999999999865

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.65  E-value=0.095  Score=28.78  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=17.3

Q ss_pred             CCCCCCCcCCCChhhhHHHhhh
Q 044109          149 SSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       149 ~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      ..|+.||+.| ....|.+|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 56788999764

>smart00451 ZnF_U1 U1-like zinc finger

Probab=90.98  E-value=0.13  Score=30.07  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=20.6

Q ss_pred             eeecccccccccCchhhhhhhhc
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNA  110 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~  110 (236)
                      +|.|.+|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58999999999999999999764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=89.77  E-value=0.23  Score=44.49  Aligned_cols=67  Identities=16%  Similarity=0.199  Sum_probs=48.1

Q ss_pred             ceeecccccccccCchhhhhhhh--ccCCC--CCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCC--CC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQN--AHKRE--RTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPL--HG  155 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r--~Htge--kp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~--Cg  155 (236)
                      .++.|..|...|.....|..|.+  .|+++  +|+.|.+..|++       .|.+.  +..|...|   +++.|..  |.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGK-------LFSRNDALKRHILLHTSISPAKEKLLNSS  360 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCc-------cccccccccCCcccccCCCccccccccCc
Confidence            57899999999999999999999  79999  999998556888       45444  36666666   4444433  44


Q ss_pred             cCCCC
Q 044109          156 AAYNR  160 (236)
Q Consensus       156 k~F~~  160 (236)
                      +.+..
T Consensus       361 ~~~~~  365 (467)
T COG5048         361 SKFSP  365 (467)
T ss_pred             ccccc
Confidence            44443

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=88.26  E-value=0.25  Score=35.46  Aligned_cols=24  Identities=38%  Similarity=0.829  Sum_probs=21.5

Q ss_pred             eeecccccccccCchhhhhhhhcc
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNAH  111 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~H  111 (236)
                      .+.|.+|++.|.+...|..|++.+
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCc
Confidence            799999999999999999999864

>smart00451 ZnF_U1 U1-like zinc finger

Probab=87.96  E-value=0.34  Score=28.16  Aligned_cols=23  Identities=9%  Similarity=0.062  Sum_probs=19.8

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhh
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      +|.|.+|++.|.....+..|.+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            57799999999999999999754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=87.87  E-value=0.85  Score=40.79  Aligned_cols=45  Identities=22%  Similarity=0.340  Sum_probs=40.6

Q ss_pred             CCCCC--ceeecc--cccccccCchhhhhhhhccCCCCCCccCcCCCCC
Q 044109           82 HPSEQ--RVFSCN--YCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus        82 ~htge--kpf~C~--~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k  126 (236)
                      .|+++  +++.|.  .|++.|.+...+.+|..+|++-+++.|....|.+
T Consensus       313 ~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (467)
T COG5048         313 NHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSS  361 (467)
T ss_pred             ccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcc
Confidence            79999  999999  7999999999999999999999998887556655

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=85.33  E-value=0.63  Score=48.42  Aligned_cols=77  Identities=13%  Similarity=0.176  Sum_probs=50.7

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhc-cCCCCCCccCcCCCCCccCCCCcccCCcc-cccc--ccc-CCCCCCCCCc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNA-HKRERTLAKRGQRIGTYTAASPFAFGQPY-LHQN--HYS-SISSLPLHGA  156 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~-Htgekp~~C~~~~C~k~~~~~~~~f~~~~-~~H~--r~h-kp~~C~~Cgk  156 (236)
                      .|+-.|-|.|..|+-.|...+.|..|||. |..-+--.|.     .       .-.+.. .+-.  +.- ++|.|..|..
T Consensus       459 L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~-----~-------gq~~~~~arg~~~~~~~~p~~C~~C~~  526 (1406)
T KOG1146|consen  459 LHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCK-----A-------GQNHPRLARGEVYRCPGKPYPCRACNY  526 (1406)
T ss_pred             eecccccccCCccchhhhhHHHhhhcccccccccchhHhH-----h-------ccccccccccccccCCCCcccceeeee
Confidence            45556889999999999999999999986 3322221222     1       000010 0000  011 8999999999


Q ss_pred             CCCChhhhHHHhhh
Q 044109          157 AYNRSLGIQVHSMI  170 (236)
Q Consensus       157 ~F~~~~~L~~H~~~  170 (236)
                      .++.+.+|.+|++.
T Consensus       527 stttng~LsihlqS  540 (1406)
T KOG1146|consen  527 STTTNGNLSIHLQS  540 (1406)
T ss_pred             eeecchHHHHHHHH
Confidence            99999999999754

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=85.05  E-value=0.4  Score=42.61  Aligned_cols=25  Identities=16%  Similarity=0.634  Sum_probs=20.0

Q ss_pred             CCCceeecccccccccCchhhhhhh
Q 044109           84 SEQRVFSCNYCQRKFYSSQALGGHQ  108 (236)
Q Consensus        84 tgekpf~C~~C~k~F~~~~~L~~H~  108 (236)
                      ...|||+|.+|+|++...-.|+-|+
T Consensus       394 ~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         394 AKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             ccCCceeccccchhhccCccceecc
Confidence            3458888888888888888888774

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=83.00  E-value=0.62  Score=39.32  Aligned_cols=25  Identities=16%  Similarity=0.538  Sum_probs=20.1

Q ss_pred             CceeecccccccccCchhhhhhhhc
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNA  110 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~  110 (236)
                      +|.+.|++|++.|.+...+.+..++
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~   27 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRV   27 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceE
Confidence            4678999999999998877766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	2e-17

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 72.5 bits (178), Expect = 2e-17
 Identities = 16/33 (48%), Positives = 26/33 (78%)

Query: 87  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAK 119
           R ++C++C+R+F S+QALGGH N H+R+R   +
Sbjct: 5   RSYTCSFCKREFRSAQALGGHMNVHRRDRARLR 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.77
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.75
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.73
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.72
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.69
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.67
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.66
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.66
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.66
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.65
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.65
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.64
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.62
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.61
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.6
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.6
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.59
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.59
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.59
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.58
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.54
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.54
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.53
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.53
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.53
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.52
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.51
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.49
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.48
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.48
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.44
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.43
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.42
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.41
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.39
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.37
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.37
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.34
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.34
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.32
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.32
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.3
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.3
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.28
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.27
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.27
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.26
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.26
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.26
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.26
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.26
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.25
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.25
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.25
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.24
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.23
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.23
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.22
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.21
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.21
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.2
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.19
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.19
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.19
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.19
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.18
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.18
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.18
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.18
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.18
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.17
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.16
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.15
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.15
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.14
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.14
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.12
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.11
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.1
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.09
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.07
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.07
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.02
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.99
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	98.99
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.99
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.97
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	98.96
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	98.9
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	98.88
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.88
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.87
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	98.87
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	98.87
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.83
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.83
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.82
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	98.81
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.8
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.8
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.8
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	98.79
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.79
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.75
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.75
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	98.74
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.74
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.69
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.67
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.66
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.64
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.63
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.63
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.62
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.62
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.62
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.61
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.61
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.61
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.6
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.59
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.59
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.59
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.59
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.59
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.58
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.58
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.58
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.58
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.58
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.57
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.57
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.57
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.57
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.57
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.57
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.56
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	98.56
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.56
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.56
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.56
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.55
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.55
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.55
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.55
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.55
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.55
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.54
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.54
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.54
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.54
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.54
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.53
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.53
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.53
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.53
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.53
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.52
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.52
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.52
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.51
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.49
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.48
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.48
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.48
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.48
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.47
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.47
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.47
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.86
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.47
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.46
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.46
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.46
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.84
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.45
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.44
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.44
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.44
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.44
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.44
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.44
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.44
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.44
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.43
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.43
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.41
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.41
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.41
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.41
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.4
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.4
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.4
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.4
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.4
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.4
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.4
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.4
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.39
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.39
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.39
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.39
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.39
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.39
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.38
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.38
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.38
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.37
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.37
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.37
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.37
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.36
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.36
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.36
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.36
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.35
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.34
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.34
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.34
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.34
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.33
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.33
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.33
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.32
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.31
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.3
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.28
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.27
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.27
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.26
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.24
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.2
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.51
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.19
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.19
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.19
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.19
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.15
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.13
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.38
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.1
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.1
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.09
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.07
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.07
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.06
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.05
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.04
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.03
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.03
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.02
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.01
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.0
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.99
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	97.99
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.98
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.97
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.96
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.96
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.94
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	97.93
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	97.93
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	97.93
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.92
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	97.91
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.14
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.9
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.89
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.89
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.88
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.88
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.88
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.86
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.85
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.02
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	97.81
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.76
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.68
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.68
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.68
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	97.61
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.54
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.51
2epa_A	72	Krueppel-like factor 10; transforming growth facto	97.45
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.92
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.7
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.29
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.9
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.64
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	93.8
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.69
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	92.31
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	82.9
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	81.11
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	80.15

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.77  E-value=2.3e-20  Score=145.05  Aligned_cols=84  Identities=14%  Similarity=0.126  Sum_probs=78.0

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHG  155 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cg  155 (236)
                      .+|+|+++|.|.+|++.|.....|..|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++||
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C~k-------~F~~~~~L~~H~~~H~~~k~~~C~~C~   85 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCR--YCEK-------VFPLAEYRTKHEIHHTGERRYQCLACG   85 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECS--SSSC-------EESSHHHHHHHHHHHHTCCCEEESSSC
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCC--ccCe-------ecccccchhhhccccCCCccccCCCCC
Confidence            3689999999999999999999999999999999999999  9999       67665  58999988   899999999


Q ss_pred             cCCCChhhhHHHhhhcCC
Q 044109          156 AAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       156 k~F~~~~~L~~H~~~HkP  173 (236)
                      +.|.+...|..|+++|.+
T Consensus        86 k~F~~~~~L~~H~~~hh~  103 (133)
T 2lt7_A           86 KSFINYQFMSSHIKSVHS  103 (133)
T ss_dssp             CEESSHHHHHHHHHHHTC
T ss_pred             CCcCCHHHHHHHhHHhcC
Confidence            999999999999998843

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=5.5e-18  Score=126.73  Aligned_cols=95  Identities=14%  Similarity=0.187  Sum_probs=80.3

Q ss_pred             CCCCCCCCCceeecccccccccCchhhhhhhhc--cCCCCCCc-cCcCCCCCccCCCCcccCC--ccccccccc---CCC
Q 044109           78 ATNDHPSEQRVFSCNYCQRKFYSSQALGGHQNA--HKRERTLA-KRGQRIGTYTAASPFAFGQ--PYLHQNHYS---SIS  149 (236)
Q Consensus        78 ~~~~~htgekpf~C~~C~k~F~~~~~L~~H~r~--Htgekp~~-C~~~~C~k~~~~~~~~f~~--~~~~H~r~h---kp~  149 (236)
                      ....+|++++||.|.+|++.|.....|..|+++  |.+++++. |.  .|++     .|.|..  .|..|+++|   +||
T Consensus         9 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~--~C~~-----~f~f~~~~~l~~H~~~H~~~~~~   81 (115)
T 2dmi_A            9 LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN--NNPK-----RWSKPRKRSLLEMEGKEDAQKVL   81 (115)
T ss_dssp             CCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCC--CCCS-----CCSSCCCCCCCCCCCSCCCCSSC
T ss_pred             hheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCC--CCCc-----ccccccHHHHHHHhhccCCCcce
Confidence            445689999999999999999999999999999  88888765 99  9999     232233  368899988   899


Q ss_pred             CCCCCCcCCCChhhhHHHhhhcCCCCCCCC
Q 044109          150 SLPLHGAAYNRSLGIQVHSMIHKPSHTSTS  179 (236)
Q Consensus       150 ~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~~  179 (236)
                      .|++|++.|.+...|++|+++|.+....+.
T Consensus        82 ~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           82 KCMYCGHSFESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             BCSSSCCBCSSHHHHHHHHHHTTTTTCSCC
T ss_pred             ECCCCCCccCCHHHHHHHHHHhCCcccCCC
Confidence            999999999999999999999876544443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.73  E-value=1e-17  Score=123.36  Aligned_cols=87  Identities=21%  Similarity=0.322  Sum_probs=78.5

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGA  156 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk  156 (236)
                      ...++++|.|.+|++.|.....|..|+++|+++++|.|.  .|++       .|...  |..|+++|   ++|.|++|++
T Consensus        11 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~C~~   81 (106)
T 2ee8_A           11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCD--ICHK-------AFRRQDHLRDHRYIHSKEKPFKCQECGK   81 (106)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCS--SSCC-------BCSCHHHHHHHGGGSCCCCTTSCSSSCC
T ss_pred             CcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC--Cccc-------hhCCHHHHHHHHHHhCCCCCeECCCcCC
Confidence            356789999999999999999999999999999999999  9999       66665  58899888   8999999999


Q ss_pred             CCCChhhhHHHhhhcCCCCCC
Q 044109          157 AYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       157 ~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      .|.+...|..|+++|.....+
T Consensus        82 ~f~~~~~L~~H~~~H~~~~~~  102 (106)
T 2ee8_A           82 GFCQSRTLAVHKTLHMQTSSP  102 (106)
T ss_dssp             CCSSHHHHHHHHHHTTSCCCC
T ss_pred             cccCHHHHHHHHHHhCCCCCC
Confidence            999999999999999765544

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=3.6e-18  Score=123.45  Aligned_cols=86  Identities=14%  Similarity=0.135  Sum_probs=77.9

Q ss_pred             CCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCcC
Q 044109           83 PSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGAA  157 (236)
Q Consensus        83 htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk~  157 (236)
                      +.++++|.|.+|++.|.....|..|+++|.++++|.|.  .|++       .|...  |..|+++|   ++|.|++|++.
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   73 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCK--TCDY-------AAADSSSLNKHLRIHSDERPFKCQICPYA   73 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECS--SSCC-------EESSHHHHHHHHHHSCCCCCEECSSSSCE
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCC--CCCC-------ccCCHHHHHHHHHHhCCCCCccCCCCCCc
Confidence            56789999999999999999999999999999999999  9999       66665  58888888   89999999999


Q ss_pred             CCChhhhHHHhhhcCCCCCC
Q 044109          158 YNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       158 F~~~~~L~~H~~~HkP~~~~  177 (236)
                      |.....|..|+++|.....+
T Consensus        74 f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           74 SRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             ESSHHHHHHHHTTCCSCCCC
T ss_pred             cCCHHHHHHHHHHhcCCCCC
Confidence            99999999999999765543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.5e-17  Score=123.42  Aligned_cols=80  Identities=13%  Similarity=0.182  Sum_probs=75.2

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGA  156 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk  156 (236)
                      .|+++++|.| .|++.|.....|..|+++|.++++|.|.  .|++       .|...  |..|+++|   ++|.|++|++
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~C~~   73 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGK-------KFKMKHHLVGHMKIHTGIKPYECNICAK   73 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECT--TTSC-------EESSSHHHHHHHTTTCCCCCEECSSSCC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCC--CCCc-------ccCCHHHHHHHHHHcCCCCCeeCCCCcc
Confidence            7899999999 9999999999999999999999999999  9999       66665  58899888   8999999999


Q ss_pred             CCCChhhhHHHhhhc
Q 044109          157 AYNRSLGIQVHSMIH  171 (236)
Q Consensus       157 ~F~~~~~L~~H~~~H  171 (236)
                      .|.+...|..|+++|
T Consensus        74 ~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           74 RFMWRDSFHRHVTSC   88 (110)
T ss_dssp             EESCHHHHHHHHHHH
T ss_pred             hhcCHHHHHHHHHHc
Confidence            999999999999998

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.67  E-value=7.2e-18  Score=126.22  Aligned_cols=98  Identities=16%  Similarity=0.295  Sum_probs=82.4

Q ss_pred             CCCceeeccc--ccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCc
Q 044109           84 SEQRVFSCNY--CQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGA  156 (236)
Q Consensus        84 tgekpf~C~~--C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk  156 (236)
                      +++++|.|.+  |++.|.+...|..|+++|.+++||.|.+..|++       .|...  |..|++.|   ++|.|++|++
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~C~~   74 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCER-------RFSRSDQLKRHQRRHTGVKPFQCKTCQR   74 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCC-------EESSHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcC-------ccCCHHHHHHHHHHcCCCCCccCCccCc
Confidence            5778999987  999999999999999999999999998556998       66655  58888877   8899999999


Q ss_pred             CCCChhhhHHHhhhcCCCCCCCC--CCCCCCCCC
Q 044109          157 AYNRSLGIQVHSMIHKPSHTSTS--HGNGNIYGH  188 (236)
Q Consensus       157 ~F~~~~~L~~H~~~HkP~~~~~~--~~~g~~~~~  188 (236)
                      .|.....|..|+++|.......|  ..||+.|..
T Consensus        75 ~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~  108 (119)
T 2jp9_A           75 KFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR  108 (119)
T ss_dssp             EESCHHHHHHHHHHHHTCCCEECCSTTCCCEESS
T ss_pred             hhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCC
Confidence            99999999999999977766667  678877764

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.9e-17  Score=124.63  Aligned_cols=98  Identities=15%  Similarity=0.303  Sum_probs=85.3

Q ss_pred             CCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--ccccccc---c---CCCCCCCCC
Q 044109           84 SEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHY---S---SISSLPLHG  155 (236)
Q Consensus        84 tgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~---h---kp~~C~~Cg  155 (236)
                      +++++|.|.+|++.|.....|..|+++|.+++||.|.  .|++       .|...  |..|++.   +   ++|.|++|+
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~   73 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECP--KCGK-------CYFRKENLLEHEARNCMNRSEQVFTCSVCQ   73 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCT--TTCC-------BCSSHHHHHHHHHHCCCCSCCCCEECSSSC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECC--CCCc-------hhcCHHHHHHHHhhhhcCCCCCCeECCCCC
Confidence            5778999999999999999999999999999999999  9999       66655  4677653   2   889999999


Q ss_pred             cCCCChhhhHHHhhhcCCCCCCCCCCCCCCCCCCC
Q 044109          156 AAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNN  190 (236)
Q Consensus       156 k~F~~~~~L~~H~~~HkP~~~~~~~~~g~~~~~~~  190 (236)
                      +.|.....|..|+++|.......|..||+.|....
T Consensus        74 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  108 (124)
T 2dlq_A           74 ETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK  108 (124)
T ss_dssp             CEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHH
T ss_pred             CccCCHHHHHHHHHHcCCCCCccCCCccchhCCHH
Confidence            99999999999999998888888888998887543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=3.7e-17  Score=120.90  Aligned_cols=88  Identities=15%  Similarity=0.240  Sum_probs=76.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      ..+|+++++|.|.+|++.|.....|..|+++|  ++||.|.  .|++       .|...  |..|++ |   +||.|++|
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~--~C~~-------~f~~~~~l~~H~~-H~~~~~~~C~~C   75 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCP--YCSL-------RFFSPELKQEHES-KCEYKKLTCLEC   75 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCT--TTCC-------CBSSHHHHHHHHH-HCSTGGGEEGGG
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCC--CCCC-------ccCCHHHHHHHHH-cCCCCCccCccc
Confidence            34799999999999999999999999999999  5899999  9999       66654  578875 6   89999999


Q ss_pred             CcCCCChhhhHHHhh-hcCCCCCCCC
Q 044109          155 GAAYNRSLGIQVHSM-IHKPSHTSTS  179 (236)
Q Consensus       155 gk~F~~~~~L~~H~~-~HkP~~~~~~  179 (236)
                      ++.|.+...|+.|++ +|......++
T Consensus        76 ~~~f~~~~~L~~H~~~~H~~~~~~~~  101 (107)
T 1wjp_A           76 MRTFKSSFSIWRHQVEVHNQNNMAPT  101 (107)
T ss_dssp             TEECSSHHHHHHHHHHTSCCCCCCCC
T ss_pred             cchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            999999999999997 8866655544

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=5.5e-17  Score=116.92  Aligned_cols=81  Identities=17%  Similarity=0.229  Sum_probs=73.1

Q ss_pred             CCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc-----CCCCCCCCCc
Q 044109           84 SEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS-----SISSLPLHGA  156 (236)
Q Consensus        84 tgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h-----kp~~C~~Cgk  156 (236)
                      +++++|.|.+|++.|.....|..|+++|+++++|.|.  .|++       .|...  |..|++.|     ++|.|++|++
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~   73 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCP--VCGL-------RFKRKDRMSYHVRSHDGSVGKPYICQSCGK   73 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECS--SSCC-------EESCHHHHHHHHHHHCCCCCSSBCCSSSCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCC--CCCC-------ccCCHHHHHHHHHHhcCCCCCceECCCccc
Confidence            5789999999999999999999999999999999999  9999       66665  57888776     6899999999


Q ss_pred             CCCChhhhHHHhh-hcCC
Q 044109          157 AYNRSLGIQVHSM-IHKP  173 (236)
Q Consensus       157 ~F~~~~~L~~H~~-~HkP  173 (236)
                      .|.+...|..|++ +|..
T Consensus        74 ~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           74 GFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             CBSSHHHHHHHHHHTSCC
T ss_pred             hhCCHHHHHHHHHHhcCC
Confidence            9999999999985 7853

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.65  E-value=1.9e-17  Score=118.10  Aligned_cols=81  Identities=21%  Similarity=0.326  Sum_probs=72.3

Q ss_pred             CCceeecc--cccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCcC
Q 044109           85 EQRVFSCN--YCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGAA  157 (236)
Q Consensus        85 gekpf~C~--~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk~  157 (236)
                      |++||.|.  .|++.|.....|..|+++|.++++|.|.  .|++       .|...  +..|+++|   ++|.|++|++.
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   71 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCR--ICMR-------NFSRSDHLTTHIRTHTGEKPFACDICGRK   71 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECT--TTCC-------EESCHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCC--CCCc-------ccCCHHHHHHHHHHcCCCCCccCCCCCch
Confidence            47899998  5999999999999999999999999999  9999       66665  58888887   89999999999


Q ss_pred             CCChhhhHHHhhhcCCC
Q 044109          158 YNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       158 F~~~~~L~~H~~~HkP~  174 (236)
                      |.....|..|+++|...
T Consensus        72 f~~~~~l~~H~~~H~~~   88 (90)
T 1a1h_A           72 FARSDERKRHTKIHLRQ   88 (90)
T ss_dssp             ESSHHHHHHHHGGGGC-
T ss_pred             hCCHHHHHHHHHHhccc
Confidence            99999999999999643

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.65  E-value=4.6e-17  Score=109.42  Aligned_cols=56  Identities=23%  Similarity=0.506  Sum_probs=50.3

Q ss_pred             CceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCChhhhH
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQ  165 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~~~~L~  165 (236)
                      ||||.|.+|++.|.....|..|+++|+|+|||.|.  .|++                              .|.+...|.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~--~C~k------------------------------~F~~~~~L~   49 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCP--ECGK------------------------------CFRDQSEVN   49 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECT--TTCC------------------------------EESSHHHHH
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECC--CCCC------------------------------CcCCHHHHH
Confidence            79999999999999999999999999999999888  5555                              578889999


Q ss_pred             HHhhhcCC
Q 044109          166 VHSMIHKP  173 (236)
Q Consensus       166 ~H~~~HkP  173 (236)
                      .|+++|..
T Consensus        50 ~H~~~Htg   57 (60)
T 4gzn_C           50 RHLKVHQN   57 (60)
T ss_dssp             HHGGGGSC
T ss_pred             HHhCccCC
Confidence            99999954

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.64  E-value=2.8e-17  Score=114.99  Aligned_cols=76  Identities=24%  Similarity=0.381  Sum_probs=70.7

Q ss_pred             eeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCcCCCChh
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGAAYNRSL  162 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk~F~~~~  162 (236)
                      ||.|.+|++.|.....|..|+++|.+++||.|.  .|++       .|...  +..|++.|   ++|.|++|++.|.+..
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   71 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQ--YCGK-------RFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSS   71 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECS--SSCC-------EESSHHHHHHHHHHHHTCCCEECTTTSCEESSHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCC--cCCh-------hhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChH
Confidence            699999999999999999999999999999999  9999       66665  58888887   8999999999999999


Q ss_pred             hhHHHhhhcC
Q 044109          163 GIQVHSMIHK  172 (236)
Q Consensus       163 ~L~~H~~~Hk  172 (236)
                      .|..|+++|.
T Consensus        72 ~l~~H~~~H~   81 (82)
T 2kmk_A           72 NLITHSRKHT   81 (82)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999999985

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.62  E-value=2.8e-16  Score=114.06  Aligned_cols=83  Identities=17%  Similarity=0.298  Sum_probs=74.0

Q ss_pred             CCCCceeeccc--ccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCC
Q 044109           83 PSEQRVFSCNY--CQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHG  155 (236)
Q Consensus        83 htgekpf~C~~--C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cg  155 (236)
                      ...+++|.|.+  |++.|.....|..|+++|+++++|.|.+..|++       .|...  +..|+++|   ++|.|++|+
T Consensus        10 ~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~C~   82 (100)
T 2ebt_A           10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW-------RFARSDELTRHYRKHTGAKPFQCGVCN   82 (100)
T ss_dssp             CCSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCC-------EESSHHHHHHHHHHHTSCCSCBCSSSC
T ss_pred             cccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCC-------ccCCHHHHHHHHHHhCCCCCeECCCCc
Confidence            34568999997  999999999999999999999999996337999       66665  58888887   899999999


Q ss_pred             cCCCChhhhHHHhhhcC
Q 044109          156 AAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       156 k~F~~~~~L~~H~~~Hk  172 (236)
                      +.|.....|..|+++|.
T Consensus        83 ~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           83 RSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             CBCSSHHHHHHHHHHHC
T ss_pred             CccCCHHHHHHHHHHhC
Confidence            99999999999999985

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.61  E-value=7.1e-17  Score=130.95  Aligned_cols=98  Identities=16%  Similarity=0.330  Sum_probs=55.0

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGA  156 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk  156 (236)
                      +|+++++|.|.+|++.|.....|..|+++|.++++|.|.  .|++       .|...  +..|++.|   ++|.|++|++
T Consensus        43 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~C~~  113 (190)
T 2i13_A           43 THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP--ECGK-------SFSQRANLRAHQRTHTGEKPYACPECGK  113 (190)
T ss_dssp             CC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECT--TTCC-------EESCHHHHHHHHHHHHTCCCEECTTTCC
T ss_pred             HcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCc--ccCC-------ccCCHHHHHHHHHhcCCCCCCcCCCCCC
Confidence            455555666666666666666666666666666666666  5665       44333  35555554   5566666666


Q ss_pred             CCCChhhhHHHhhhcCCCCCCCCCCCCCCCCC
Q 044109          157 AYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGH  188 (236)
Q Consensus       157 ~F~~~~~L~~H~~~HkP~~~~~~~~~g~~~~~  188 (236)
                      .|.....|..|+++|.......|..||..|..
T Consensus       114 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  145 (190)
T 2i13_A          114 SFSQLAHLRAHQRTHTGEKPYKCPECGKSFSR  145 (190)
T ss_dssp             EESSHHHHHHHHHHHHCCCCEECTTTCCEESC
T ss_pred             ccCCHHHHHHHHHHhCCCCCeECCCCCcccCC
Confidence            66666666666666655555555556655543

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.60  E-value=1.8e-16  Score=112.74  Aligned_cols=79  Identities=19%  Similarity=0.302  Sum_probs=71.8

Q ss_pred             Cceeeccc--ccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCcCC
Q 044109           86 QRVFSCNY--CQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGAAY  158 (236)
Q Consensus        86 ekpf~C~~--C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk~F  158 (236)
                      .++|.|.+  |++.|.....|..|+++|.+++||.|.+..|++       .|...  +..|+++|   ++|.|++|++.|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   75 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGW-------KFARSDELTRHYRKHTGHRPFQCQKCDRAF   75 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCC-------EESSHHHHHHHHHHHHCCCCEECSSSSCEE
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCC-------ccCCHHHHHHHHHHcCCCCCccCCCCCccc
Confidence            57899999  999999999999999999999999997446999       66665  58888888   899999999999


Q ss_pred             CChhhhHHHhhhc
Q 044109          159 NRSLGIQVHSMIH  171 (236)
Q Consensus       159 ~~~~~L~~H~~~H  171 (236)
                      .....|..|+++|
T Consensus        76 ~~~~~l~~H~~~H   88 (89)
T 2wbs_A           76 SRSDHLALHMKRH   88 (89)
T ss_dssp             SSHHHHHHHGGGG
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999988

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.60  E-value=6.3e-17  Score=131.24  Aligned_cols=101  Identities=18%  Similarity=0.329  Sum_probs=89.5

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGA  156 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk  156 (236)
                      +|.++++|.|.+|++.|.+...|..|+++|.++++|.|.  .|++       .|...  |..|+++|   ++|.|++|++
T Consensus        71 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~C~~  141 (190)
T 2i13_A           71 THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP--ECGK-------SFSQLAHLRAHQRTHTGEKPYKCPECGK  141 (190)
T ss_dssp             HHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECT--TTCC-------EESSHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred             hcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCC--CCCC-------ccCCHHHHHHHHHHhCCCCCeECCCCCc
Confidence            577889999999999999999999999999999999999  9999       66665  58888887   8999999999


Q ss_pred             CCCChhhhHHHhhhcCCCCCCCCCCCCCCCCCCCC
Q 044109          157 AYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNW  191 (236)
Q Consensus       157 ~F~~~~~L~~H~~~HkP~~~~~~~~~g~~~~~~~~  191 (236)
                      .|.....|..|+++|.......|..||+.|.....
T Consensus       142 ~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~  176 (190)
T 2i13_A          142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDA  176 (190)
T ss_dssp             EESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHH
T ss_pred             ccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHH
Confidence            99999999999999988778888889988875433

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.59  E-value=3.4e-16  Score=118.13  Aligned_cols=93  Identities=17%  Similarity=0.321  Sum_probs=48.7

Q ss_pred             Cceeecc--cccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCC--CCc
Q 044109           86 QRVFSCN--YCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPL--HGA  156 (236)
Q Consensus        86 ekpf~C~--~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~--Cgk  156 (236)
                      +++|.|.  .|++.|.+...|..|+++| ++++|.|.  .|++       .|...  |..|+++|   ++|.|++  |++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~   72 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCA--ECGK-------AFVESSKLKRHQLVHTGEKPFQCTFEGCGK   72 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECT--TTCC-------EESSHHHHHHHGGGTSCCCCEECCSTTCCC
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECC--CCCc-------hhCCHHHHHHHHHHcCCCCCeeCCCCCCcC
Confidence            3455555  5555555555555555555 55555555  5555       34333  35555554   5555543  555


Q ss_pred             CCCChhhhHHHhhhcCCCCCCCCC--CCCCCCCC
Q 044109          157 AYNRSLGIQVHSMIHKPSHTSTSH--GNGNIYGH  188 (236)
Q Consensus       157 ~F~~~~~L~~H~~~HkP~~~~~~~--~~g~~~~~  188 (236)
                      .|.....|..|+++|.......|.  .||+.|..
T Consensus        73 ~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~  106 (124)
T 1ubd_C           73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ  106 (124)
T ss_dssp             EESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSS
T ss_pred             ccCCHHHHHHHHHHhCCCCceECCCCCCCCccCC
Confidence            555555555555555444444442  35555543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.59  E-value=8.9e-16  Score=115.82  Aligned_cols=86  Identities=20%  Similarity=0.281  Sum_probs=74.6

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCC--CC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLP--LH  154 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~--~C  154 (236)
                      +| ++++|.|.+|++.|.+...|..|+++|++++||.|....|++       .|...  |..|+++|   ++|.|+  .|
T Consensus        29 ~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~~~C  100 (124)
T 1ubd_C           29 TH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK-------RFSLDFNLRTHVRIHTGDRPYVCPFDGC  100 (124)
T ss_dssp             GG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCC-------EESCHHHHHHHHHHHHCCCCCCCCSTTC
T ss_pred             Hc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcC-------ccCCHHHHHHHHHHhCCCCceECCCCCC
Confidence            56 889999999999999999999999999999999998224999       67665  58898888   899996  59


Q ss_pred             CcCCCChhhhHHHhhhcCCCC
Q 044109          155 GAAYNRSLGIQVHSMIHKPSH  175 (236)
Q Consensus       155 gk~F~~~~~L~~H~~~HkP~~  175 (236)
                      ++.|.+...|..|+++|....
T Consensus       101 ~~~f~~~~~L~~H~~~H~~~k  121 (124)
T 1ubd_C          101 NKKFAQSTNLKSHILTHAKAK  121 (124)
T ss_dssp             CCCCSSTTTTHHHHHHHC---
T ss_pred             CCccCCHHHHHHHHHHHcccc
Confidence            999999999999999996543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.59  E-value=5.7e-16  Score=121.45  Aligned_cols=81  Identities=14%  Similarity=0.159  Sum_probs=42.5

Q ss_pred             eecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCC--CCcCCCCh
Q 044109           89 FSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPL--HGAAYNRS  161 (236)
Q Consensus        89 f~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~--Cgk~F~~~  161 (236)
                      |.|.+|++.|.....|..|+++|++++||.|....|++       .|...  |..|+++|   ++|.|++  |++.|.+.
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~-------~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~  135 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGK-------IFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANS  135 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCC-------EESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSH
T ss_pred             cCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCC-------ccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCH
Confidence            55555555555555555555555555555555111555       34333  35555554   4555554  55555555


Q ss_pred             hhhHHHhhhcCCCCC
Q 044109          162 LGIQVHSMIHKPSHT  176 (236)
Q Consensus       162 ~~L~~H~~~HkP~~~  176 (236)
                      ..|..|+++|.....
T Consensus       136 ~~L~~H~~~H~~~k~  150 (155)
T 2rpc_A          136 SDRKKHMHVHTSDKS  150 (155)
T ss_dssp             HHHHHSSTTTTSCCC
T ss_pred             HHHHHHHHHhcCCCC
Confidence            555555555544433

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.58  E-value=1.8e-16  Score=118.55  Aligned_cols=81  Identities=20%  Similarity=0.354  Sum_probs=75.2

Q ss_pred             CCCCCceeecc--cccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCC--C
Q 044109           82 HPSEQRVFSCN--YCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSL--P  152 (236)
Q Consensus        82 ~htgekpf~C~--~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C--~  152 (236)
                      +|+++++|.|.  .|++.|.+...|..|+++|+++++|.|.  .|++       .|...  |..|+++|   ++|.|  +
T Consensus        30 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~~  100 (119)
T 2jp9_A           30 KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK--TCQR-------KFSRSDHLKTHTRTHTGEKPFSCRWP  100 (119)
T ss_dssp             HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECT--TTCC-------EESCHHHHHHHHHHHHTCCCEECCST
T ss_pred             hhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCC--ccCc-------hhCCHHHHHHHHHHhcCCCCeeCCCC
Confidence            57889999999  6999999999999999999999999999  9999       67665  58899888   89999  8


Q ss_pred             CCCcCCCChhhhHHHhhhc
Q 044109          153 LHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       153 ~Cgk~F~~~~~L~~H~~~H  171 (236)
                      .|++.|.....|..|+++|
T Consensus       101 ~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A          101 SCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             TCCCEESSHHHHHHHHHTC
T ss_pred             CCccccCCHHHHHHHHhcC
Confidence            9999999999999999987

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.54  E-value=4.4e-15  Score=116.33  Aligned_cols=106  Identities=15%  Similarity=0.181  Sum_probs=90.1

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhc-cCCCCC--------CccCcCCCCCccCCCCcccCCc--cccccccc---C
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNA-HKRERT--------LAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---S  147 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~-Htgekp--------~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---k  147 (236)
                      .+..+++|.|.+|++.|.+...|..|+++ |.++++        |.|.  .|++       .|...  |..|+++|   +
T Consensus        19 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~   89 (155)
T 2rpc_A           19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECP--REGK-------SFKAKYKLVNHIRVHTGEK   89 (155)
T ss_dssp             CCTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCT--TSSC-------CCSSHHHHHHHTHHHHCCC
T ss_pred             echhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCC--Cccc-------ccCCHHHHHHHHHhcCCCC
Confidence            45567899999999999999999999997 888766        8999  9999       66655  58899888   8


Q ss_pred             CCCCCC--CCcCCCChhhhHHHhhhcCCCCCCCCCC--CCCCCCCCCCCCCCC
Q 044109          148 ISSLPL--HGAAYNRSLGIQVHSMIHKPSHTSTSHG--NGNIYGHNNWSRPPI  196 (236)
Q Consensus       148 p~~C~~--Cgk~F~~~~~L~~H~~~HkP~~~~~~~~--~g~~~~~~~~~r~~~  196 (236)
                      +|.|++  |++.|.....|..|+++|.......|..  ||+.|.....+..++
T Consensus        90 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~  142 (155)
T 2rpc_A           90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM  142 (155)
T ss_dssp             SEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSS
T ss_pred             cccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHH
Confidence            999998  9999999999999999998887788874  999888654444444

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.54  E-value=7.5e-15  Score=118.90  Aligned_cols=95  Identities=13%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             CCCCCceeecc--cccccccCchhhhhhh-hcc-CCCCCCcc--CcCCCCCccCCCCcccCCc--cccccccc---CCCC
Q 044109           82 HPSEQRVFSCN--YCQRKFYSSQALGGHQ-NAH-KRERTLAK--RGQRIGTYTAASPFAFGQP--YLHQNHYS---SISS  150 (236)
Q Consensus        82 ~htgekpf~C~--~C~k~F~~~~~L~~H~-r~H-tgekp~~C--~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~  150 (236)
                      +|+++++|.|.  .|++.|.+...|..|+ +.| .++++|.|  .  .|++       .|...  |..|+++|   +||.
T Consensus        66 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~--~C~k-------~f~~~~~L~~H~~~H~~~~~~~  136 (190)
T 1tf6_A           66 THTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFE--NCGK-------AFKKHNQLKVHQFSHTQQLPYE  136 (190)
T ss_dssp             TTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSS--SSCE-------ECSSHHHHHHHHGGGSSSCSSB
T ss_pred             HccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCC--CCcc-------ccCCHHHHHHHHHHhCCCCCcc
Confidence            67777888887  7888888888888887 667 46778888  6  7887       55554  47777777   7788


Q ss_pred             CCC--CCcCCCChhhhHHHhhhcCCCCCCCCCC---CCCCCCC
Q 044109          151 LPL--HGAAYNRSLGIQVHSMIHKPSHTSTSHG---NGNIYGH  188 (236)
Q Consensus       151 C~~--Cgk~F~~~~~L~~H~~~HkP~~~~~~~~---~g~~~~~  188 (236)
                      |++  |++.|.+...|..|+++|..   ..+..   ||..|..
T Consensus       137 C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f~~  176 (190)
T 1tf6_A          137 CPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKT  176 (190)
T ss_dssp             CCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCCSC
T ss_pred             CCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCcccc
Confidence            876  88888888888888888766   44444   6666653

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.53  E-value=2e-15  Score=113.41  Aligned_cols=83  Identities=12%  Similarity=0.240  Sum_probs=74.5

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhc---cCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNA---HKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPL  153 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~---Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~  153 (236)
                      +|.++++|.|.+|++.|.+...|..|++.   |.++++|.|.  .|++       .|...  |..|+++|   +||.|++
T Consensus        29 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~   99 (124)
T 2dlq_A           29 KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCS--VCQE-------TFRRRMELRLHMVSHTGEMPYKCSS   99 (124)
T ss_dssp             HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECS--SSCC-------EESSHHHHHHHHHHHSSSCSEECSS
T ss_pred             hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECC--CCCC-------ccCCHHHHHHHHHHcCCCCCccCCC
Confidence            67889999999999999999999999984   6889999999  9999       66665  58898888   8999999


Q ss_pred             CCcCCCChhhhHHHhh-hcCC
Q 044109          154 HGAAYNRSLGIQVHSM-IHKP  173 (236)
Q Consensus       154 Cgk~F~~~~~L~~H~~-~HkP  173 (236)
                      |++.|.+...|+.|++ +|..
T Consensus       100 C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A          100 CSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             SCCEESSHHHHHHHHHHTSSC
T ss_pred             ccchhCCHHHHHHHHHHHCCC
Confidence            9999999999999987 5643

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.53  E-value=3.7e-15  Score=120.76  Aligned_cols=108  Identities=14%  Similarity=0.236  Sum_probs=90.6

Q ss_pred             CCCCCceeec--ccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--ccccc-ccc----CCCCC-
Q 044109           82 HPSEQRVFSC--NYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQN-HYS----SISSL-  151 (236)
Q Consensus        82 ~htgekpf~C--~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~-r~h----kp~~C-  151 (236)
                      +|+++++|.|  .+|++.|.+...|..|+++|.+++||.|....|++       .|...  |..|+ +.|    ++|.| 
T Consensus        36 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~-------~f~~~~~l~~H~~~~h~~~~~~~~C~  108 (190)
T 1tf6_A           36 KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDL-------RFTTKANMKKHFNRFHNIKICVYVCH  108 (190)
T ss_dssp             HHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCC-------EESCHHHHHHHHHTTSSTTTSCCEEC
T ss_pred             hcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCC-------ccCCHHHHHHHHHHhcCCCcceeeCC
Confidence            6788999999  88999999999999999999999999998556999       66665  57787 555    68999 


Q ss_pred             -CCCCcCCCChhhhHHHhhhcCCCCCCCCCC--CCCCCCCCCCCCCCC
Q 044109          152 -PLHGAAYNRSLGIQVHSMIHKPSHTSTSHG--NGNIYGHNNWSRPPI  196 (236)
Q Consensus       152 -~~Cgk~F~~~~~L~~H~~~HkP~~~~~~~~--~g~~~~~~~~~r~~~  196 (236)
                       +.|++.|.....|..|+++|.......|..  ||+.|.....++.++
T Consensus       109 ~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~  156 (190)
T 1tf6_A          109 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE  156 (190)
T ss_dssp             SSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHH
T ss_pred             CCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHH
Confidence             889999999999999999998888888866  999887644444333

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.53  E-value=2.1e-15  Score=117.88  Aligned_cols=80  Identities=14%  Similarity=0.271  Sum_probs=37.0

Q ss_pred             CCCCceeeccc--ccccccCchhhhhhhhccCCCCCCccCcCC--CCCccCCCCcccCC--cccccc-ccc---CCCCCC
Q 044109           83 PSEQRVFSCNY--CQRKFYSSQALGGHQNAHKRERTLAKRGQR--IGTYTAASPFAFGQ--PYLHQN-HYS---SISSLP  152 (236)
Q Consensus        83 htgekpf~C~~--C~k~F~~~~~L~~H~r~Htgekp~~C~~~~--C~k~~~~~~~~f~~--~~~~H~-r~h---kp~~C~  152 (236)
                      |+++++|.|.+  |++.|.+...|..|+++|++++||.|.  .  |++       .|..  .|..|+ ++|   ++|.|+
T Consensus        62 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~~~C~~-------~f~~~~~L~~H~~~~H~~~~~~~C~  132 (155)
T 2gli_A           62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE--HEGCSK-------AFSNASDRAKHQNRTHSNEKPYVCK  132 (155)
T ss_dssp             HHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECC--STTCCC-------EESSSSTTHHHHHHTTCSCCCEECC
T ss_pred             cCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCC--CCCCCC-------ccCCHHHHHHHHHHhcCCCCCeeCC
Confidence            44444455543  555555555555555455544555554  3  444       2222  234444 334   444554


Q ss_pred             C--CCcCCCChhhhHHHhhhc
Q 044109          153 L--HGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       153 ~--Cgk~F~~~~~L~~H~~~H  171 (236)
                      +  |++.|.+...|..|+++|
T Consensus       133 ~~~C~~~f~~~~~L~~H~~~h  153 (155)
T 2gli_A          133 LPGCTKRYTDPSSLRKHVKTV  153 (155)
T ss_dssp             STTTCCEESSHHHHHHHHHHS
T ss_pred             CCCCccccCCHHHHHHHHHhh
Confidence            4  555555544555554444

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.52  E-value=2.9e-15  Score=117.09  Aligned_cols=100  Identities=13%  Similarity=0.107  Sum_probs=76.6

Q ss_pred             CCCCCceeecccc-----cccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCC
Q 044109           82 HPSEQRVFSCNYC-----QRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSL  151 (236)
Q Consensus        82 ~htgekpf~C~~C-----~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C  151 (236)
                      +|+++++|.|.+|     ++.|.....|..|+++|++++||.|....|++       .|...  |..|++.|   ++|.|
T Consensus        28 ~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~-------~f~~~~~l~~H~~~h~~~~~~~C  100 (155)
T 2gli_A           28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRK-------SYSRLENLKTHLRSHTGEKPYMC  100 (155)
T ss_dssp             SSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCC-------CCSSHHHHHHHHHHTTTCCCEEC
T ss_pred             cCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCC-------cccCHHHHHHHHHHcCCCCCeeC
Confidence            4677788887753     38888888888888888888888887224888       55554  57787777   78888


Q ss_pred             CC--CCcCCCChhhhHHHh-hhcCCCCCCCCCC--CCCCCCC
Q 044109          152 PL--HGAAYNRSLGIQVHS-MIHKPSHTSTSHG--NGNIYGH  188 (236)
Q Consensus       152 ~~--Cgk~F~~~~~L~~H~-~~HkP~~~~~~~~--~g~~~~~  188 (236)
                      ++  |++.|.....|..|+ ++|.......|.-  ||+.|..
T Consensus       101 ~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~  142 (155)
T 2gli_A          101 EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD  142 (155)
T ss_dssp             CSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESS
T ss_pred             CCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCC
Confidence            87  888888888888887 7887766666755  8877754

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.51  E-value=1.1e-16  Score=114.43  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=70.4

Q ss_pred             CceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc--CCCCCCCCCcCCCCh
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS--SISSLPLHGAAYNRS  161 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h--kp~~C~~Cgk~F~~~  161 (236)
                      ++||.|.+|++.|.....|..|+++|++++||.|.  .|++       .|...  |..|+++|  .+|.|+.|++.|...
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C~k-------~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~   71 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD--ICGR-------KFARSDERKRHRDIQHILPILEDKVEELLSKN   71 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECT--TTCC-------EESSHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCC--CCCC-------ccCCHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            58999999999999999999999999999999999  9999       66665  58888877  889999999999999


Q ss_pred             hhhHHHhhhc
Q 044109          162 LGIQVHSMIH  171 (236)
Q Consensus       162 ~~L~~H~~~H  171 (236)
                      ..|..|++.+
T Consensus        72 ~~L~~H~~~~   81 (88)
T 1llm_C           72 YHLENEVARL   81 (88)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhhHHHHHHH
Confidence            9999998654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.49  E-value=4e-15  Score=104.46  Aligned_cols=75  Identities=13%  Similarity=0.130  Sum_probs=68.6

Q ss_pred             eeec--ccccccccCchhhhhhhhccCCCCCCccCcCC--CCCccCCCCcccCCc--ccccccccCCCCCCC---CCcCC
Q 044109           88 VFSC--NYCQRKFYSSQALGGHQNAHKRERTLAKRGQR--IGTYTAASPFAFGQP--YLHQNHYSSISSLPL---HGAAY  158 (236)
Q Consensus        88 pf~C--~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~--C~k~~~~~~~~f~~~--~~~H~r~hkp~~C~~---Cgk~F  158 (236)
                      ||.|  ..|++.|.....|..|+++|++++||.|.  .  |++       .|...  +..|+++|..|.|+.   |++.|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~~~C~~-------~f~~~~~l~~H~~~h~~~~C~~~~~C~~~f   71 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP--HEGCDK-------RFSLPSRLKRHEKVHAGYPCKKDDSCSFVG   71 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECC--STTCCC-------EESSHHHHHHHHHHHHSEECCSCSSCCCEE
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCC--CCCCcC-------ccCCHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence            6999  89999999999999999999999999998  7  999       67665  588988884499999   99999


Q ss_pred             CChhhhHHHhhhc
Q 044109          159 NRSLGIQVHSMIH  171 (236)
Q Consensus       159 ~~~~~L~~H~~~H  171 (236)
                      .....|..|+++|
T Consensus        72 ~~~~~l~~H~~~h   84 (85)
T 2j7j_A           72 KTWTLYLKHVAEC   84 (85)
T ss_dssp             SSHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=9.9e-15  Score=101.51  Aligned_cols=67  Identities=18%  Similarity=0.334  Sum_probs=59.4

Q ss_pred             CCCCceeeccc--ccccccCchhhhhhhh-ccCCCCCCccCcCC--CCCccCCCCcccCCc--cccccccc---CCCCCC
Q 044109           83 PSEQRVFSCNY--CQRKFYSSQALGGHQN-AHKRERTLAKRGQR--IGTYTAASPFAFGQP--YLHQNHYS---SISSLP  152 (236)
Q Consensus        83 htgekpf~C~~--C~k~F~~~~~L~~H~r-~Htgekp~~C~~~~--C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~  152 (236)
                      .+++++|.|..  |++.|.+...|..|++ +|++++||.|.  .  |++       .|...  |..|+++|   +||.|+
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~--~~~C~k-------~f~~~~~L~~H~~~H~~~~~~~C~   72 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCP--EPACGK-------SFNFKKHLKEHMKLHSDTRDYICE   72 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECS--CTTTCC-------EESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECC--CCCCcC-------ccCCHHHHHHHHHHhCCCCCeeCC
Confidence            35789999997  9999999999999999 79999999999  7  999       66655  58888888   899999


Q ss_pred             CCCcCC
Q 044109          153 LHGAAY  158 (236)
Q Consensus       153 ~Cgk~F  158 (236)
                      +||+.|
T Consensus        73 ~C~k~F   78 (79)
T 2dlk_A           73 FSGPSS   78 (79)
T ss_dssp             SSSCCC
T ss_pred             CCCCCC
Confidence            999988

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=2.5e-14  Score=97.57  Aligned_cols=65  Identities=15%  Similarity=0.146  Sum_probs=56.0

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCCh
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRS  161 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~~  161 (236)
                      +|+++++|.|.+|++.|.....|..|+++|++++||.|.  .|++                              .|.+.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C~~------------------------------~f~~~   50 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCN--YCSF------------------------------DTKQP   50 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECS--SSSC------------------------------EESSH
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCC--CCCC------------------------------ccCCH
Confidence            688999999999999999999999999999999888887  5554                              58888


Q ss_pred             hhhHHHhhhcCCCCCCC
Q 044109          162 LGIQVHSMIHKPSHTST  178 (236)
Q Consensus       162 ~~L~~H~~~HkP~~~~~  178 (236)
                      ..|..|+++|......|
T Consensus        51 ~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A           51 SNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             HHHHHHHHHHHSSSCCS
T ss_pred             HHHHHHHHHHhCCCCCC
Confidence            99999999986655444

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=5.8e-14  Score=96.35  Aligned_cols=61  Identities=26%  Similarity=0.452  Sum_probs=53.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYN  159 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~  159 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|++                              .|.
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~--~C~~------------------------------~f~   53 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL--ECGK------------------------------AFS   53 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECS--SSCC------------------------------EES
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECC--CCCc------------------------------ccC
Confidence            45899999999999999999999999999999998888887  5554                              578


Q ss_pred             ChhhhHHHhhhcC
Q 044109          160 RSLGIQVHSMIHK  172 (236)
Q Consensus       160 ~~~~L~~H~~~Hk  172 (236)
                      +...|+.|+++|.
T Consensus        54 ~~~~L~~H~~~H~   66 (72)
T 1x6e_A           54 QNSGLINHQRIHT   66 (72)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcC
Confidence            8889999999984

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.43  E-value=7.1e-15  Score=113.91  Aligned_cols=71  Identities=18%  Similarity=0.217  Sum_probs=63.3

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---------CCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---------SISS  150 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---------kp~~  150 (236)
                      +|++++||.|.+|++.|.+...|..|+++|++++||.|.  .|++       .|...  |..|++.|         ++|.
T Consensus        44 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C~k-------~F~~~~~L~~H~~~hh~~~p~~~~k~~~  114 (133)
T 2lt7_A           44 IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL--ACGK-------SFINYQFMSSHIKSVHSQDPSGDSKLYR  114 (133)
T ss_dssp             HHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEES--SSCC-------EESSHHHHHHHHHHHTCCCTTSSSCCEE
T ss_pred             HcCCCCCeeCCccCeecccccchhhhccccCCCccccCC--CCCC-------CcCCHHHHHHHhHHhcCCCCCCCCCCee
Confidence            789999999999999999999999999999999999999  9999       67665  57777654         5689


Q ss_pred             CCCCCcCCCCh
Q 044109          151 LPLHGAAYNRS  161 (236)
Q Consensus       151 C~~Cgk~F~~~  161 (236)
                      |.+|++.|.+.
T Consensus       115 C~~C~k~~~~~  125 (133)
T 2lt7_A          115 LHPCRSLQIRQ  125 (133)
T ss_dssp             ECCCCSSCCCC
T ss_pred             cCCCCchhhhc
Confidence            99999988754

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=3.9e-13  Score=94.57  Aligned_cols=80  Identities=13%  Similarity=0.188  Sum_probs=56.4

Q ss_pred             CCCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCC
Q 044109           79 TNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAY  158 (236)
Q Consensus        79 ~~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F  158 (236)
                      ...+|++++||.|.+|++.|.....|..|+++|.++..        ..                    ++|.|++|++.|
T Consensus         6 H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~--------~~--------------------~~~~C~~C~~~f   57 (86)
T 1x6h_A            6 SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF--------VP--------------------AAFVCSKCGKTF   57 (86)
T ss_dssp             CSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSC--------CC--------------------CCEECSSSCCEE
T ss_pred             ccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcC--------CC--------------------cceECCCCCChh
Confidence            45589999999999999999999999999987765410        00                    234455556667


Q ss_pred             CChhhhHHHhhhcCCCCCCCCCCCCCCC
Q 044109          159 NRSLGIQVHSMIHKPSHTSTSHGNGNIY  186 (236)
Q Consensus       159 ~~~~~L~~H~~~HkP~~~~~~~~~g~~~  186 (236)
                      .+...|..|+++|.......+..+|..+
T Consensus        58 ~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           58 TRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             SCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             CCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            7777777777777666666655555443

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.3e-13  Score=95.73  Aligned_cols=44  Identities=25%  Similarity=0.498  Sum_probs=39.7

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k  126 (236)
                      ..+.++++|.|.+|++.|.....|..|+++|++++||.|.  .|++
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~   54 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGK   54 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECS--SSCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCC--CCCC
Confidence            3678899999999999999999999999999999888888  6666

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.39  E-value=2e-13  Score=94.09  Aligned_cols=62  Identities=23%  Similarity=0.490  Sum_probs=53.6

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCCh
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRS  161 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~~  161 (236)
                      .++++++|.|.+|++.|.....|..|+++|++++||.|.  .|++                              .|.+.
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~--~C~k------------------------------~f~~~   58 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCN--ICGA------------------------------QFNRP   58 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECT--TTCC------------------------------EESCH
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECC--CCCc------------------------------hhCCH
Confidence            678899999999999999999999999999999888887  5554                              57888


Q ss_pred             hhhHHHhhhcCCCC
Q 044109          162 LGIQVHSMIHKPSH  175 (236)
Q Consensus       162 ~~L~~H~~~HkP~~  175 (236)
                      ..|..|+++|....
T Consensus        59 ~~L~~H~~~H~~~k   72 (74)
T 2lce_A           59 ANLKTHTRIHSGEK   72 (74)
T ss_dssp             HHHHHHHHHHCCSC
T ss_pred             HHHHHHHHhcCCCC
Confidence            89999999986543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=3.7e-13  Score=93.54  Aligned_cols=59  Identities=17%  Similarity=0.297  Sum_probs=49.9

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCC---CCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKR---ERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAY  158 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htg---ekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F  158 (236)
                      +|++++||.|.+|++.|.....|..|+++|++   +++|.|.                                +|++.|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~--------------------------------~C~k~f   48 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCE--------------------------------FCGKRF   48 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECT--------------------------------TTCCEE
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCC--------------------------------CCCchh
Confidence            48999999999999999999999999999996   5666555                                456668


Q ss_pred             CChhhhHHHhh-hcC
Q 044109          159 NRSLGIQVHSM-IHK  172 (236)
Q Consensus       159 ~~~~~L~~H~~-~Hk  172 (236)
                      .+...|..|++ .|.
T Consensus        49 ~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A           49 EKPDSVAAHRSKSHP   63 (78)
T ss_dssp             SSHHHHHHHHHHTST
T ss_pred             CCHHHHHHHHHHhCC
Confidence            88999999984 454

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.37  E-value=6.2e-13  Score=95.27  Aligned_cols=60  Identities=17%  Similarity=0.243  Sum_probs=51.9

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNR  160 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~  160 (236)
                      ..+...++|.|++|++.|.+...|.+|+++|++++||.|.  .|++                              .|.+
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~--~C~k------------------------------~F~~   68 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCK--YCPA------------------------------TFYS   68 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECT--TSSC------------------------------EESS
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCC--CCCC------------------------------EeCC
Confidence            3678889999999999999999999999999999998888  5555                              5788


Q ss_pred             hhhhHHHh-hhcC
Q 044109          161 SLGIQVHS-MIHK  172 (236)
Q Consensus       161 ~~~L~~H~-~~Hk  172 (236)
                      ...|.+|+ ++|.
T Consensus        69 ~~~L~~H~~~~H~   81 (85)
T 2lv2_A           69 SPGLTRHINKCHP   81 (85)
T ss_dssp             HHHHHHHHHTTCT
T ss_pred             HHHHHHhCcccCc
Confidence            88999996 5664

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.34  E-value=2.5e-13  Score=88.51  Aligned_cols=56  Identities=21%  Similarity=0.278  Sum_probs=45.3

Q ss_pred             CCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCChhhh
Q 044109           85 EQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGI  164 (236)
Q Consensus        85 gekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~~~~L  164 (236)
                      |++||.|.+|++.|.....|..|+++|++++||.|.  .|++                              .|.+...|
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~------------------------------~f~~~~~l   48 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCE--FCEY------------------------------AAAQKTSL   48 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECS--SSSC------------------------------EESSHHHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCC--CCcc------------------------------hhCCHHHH
Confidence            468999999999999999999999999999888887  5555                              57788888


Q ss_pred             HHHhhhcC
Q 044109          165 QVHSMIHK  172 (236)
Q Consensus       165 ~~H~~~Hk  172 (236)
                      ..|+++|.
T Consensus        49 ~~H~~~hh   56 (57)
T 3uk3_C           49 RYHLERHH   56 (57)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            88888763

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=1.5e-12  Score=90.24  Aligned_cols=64  Identities=16%  Similarity=0.257  Sum_probs=51.8

Q ss_pred             CCCCCCCCceeecccccccccCchhhhhhhh-ccCCC-CCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCc
Q 044109           79 TNDHPSEQRVFSCNYCQRKFYSSQALGGHQN-AHKRE-RTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGA  156 (236)
Q Consensus        79 ~~~~htgekpf~C~~C~k~F~~~~~L~~H~r-~Htge-kp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk  156 (236)
                      ...+|++++||.|.+|++.|.....|..|++ .|+++ ++|.|.                                +|++
T Consensus         6 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~--------------------------------~C~~   53 (77)
T 2ct1_A            6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCP--------------------------------HCDT   53 (77)
T ss_dssp             CCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECS--------------------------------SSSC
T ss_pred             cccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCC--------------------------------CCCC
Confidence            4558999999999999999999999999987 67764 566665                                4566


Q ss_pred             CCCChhhhHHHhhhcCCC
Q 044109          157 AYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       157 ~F~~~~~L~~H~~~HkP~  174 (236)
                      .|.+...|..|+++|.+.
T Consensus        54 ~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A           54 VIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             EESSHHHHHHHHHHTSCC
T ss_pred             ccCCHHHHHHHHHHhCCC
Confidence            688899999999987543

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=5e-13  Score=97.44  Aligned_cols=64  Identities=14%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             CCCCCCceeeccccccccc-CchhhhhhhhccCC-CCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCC
Q 044109           81 DHPSEQRVFSCNYCQRKFY-SSQALGGHQNAHKR-ERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAY  158 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~-~~~~L~~H~r~Htg-ekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F  158 (236)
                      .+|+++++|.|.+|++.|. ....|..|+++|++ ++||.|.                                +|++.|
T Consensus        17 ~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~--------------------------------~C~k~F   64 (98)
T 2gqj_A           17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQ--------------------------------HCRKQF   64 (98)
T ss_dssp             HTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCS--------------------------------SSCCCC
T ss_pred             HHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECC--------------------------------CCCCcc
Confidence            3677777777777777777 77777777777776 6666655                                566678


Q ss_pred             CChhhhHHHhhhcCCCCC
Q 044109          159 NRSLGIQVHSMIHKPSHT  176 (236)
Q Consensus       159 ~~~~~L~~H~~~HkP~~~  176 (236)
                      .+...|++|+++|.....
T Consensus        65 ~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           65 KSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             SCHHHHHHHHHHHSCSCS
T ss_pred             CCHHHHHHHHHHHcCCCC
Confidence            999999999999865443

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=3.6e-13  Score=90.49  Aligned_cols=60  Identities=13%  Similarity=0.234  Sum_probs=50.4

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhc-c-CCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNA-H-KRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAY  158 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~-H-tgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F  158 (236)
                      .+|++++||.|.+|++.|.....|..|+++ | ++++||.|.  .|                              ++.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~--~C------------------------------~k~f   50 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCP--FC------------------------------FKEF   50 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECT--TT------------------------------CCEE
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECC--CC------------------------------CCcc
Confidence            368899999999999999999999999998 7 577777777  55                              4557


Q ss_pred             CChhhhHHHhhhcC
Q 044109          159 NRSLGIQVHSMIHK  172 (236)
Q Consensus       159 ~~~~~L~~H~~~Hk  172 (236)
                      .+...|..|+++|.
T Consensus        51 ~~~~~L~~H~~~~H   64 (66)
T 2drp_A           51 TRKDNMTAHVKIIH   64 (66)
T ss_dssp             SCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHc
Confidence            88888999988764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=3.2e-13  Score=100.02  Aligned_cols=64  Identities=11%  Similarity=0.118  Sum_probs=48.7

Q ss_pred             CCCCCceeecccccccccCchhhhhhhh-cc---CCCCCCccCcCCCCCccCCCCcccCCc--cccc-cccc---CCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQN-AH---KRERTLAKRGQRIGTYTAASPFAFGQP--YLHQ-NHYS---SISSL  151 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r-~H---tgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H-~r~h---kp~~C  151 (236)
                      .-+|++||.|.+|++.|.....|..|++ +|   ++++||.|.  .|++       .|...  |..| +++|   +||.|
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~--~Cgk-------~F~~~~~L~~H~~r~Htgekpy~C   82 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCV--ECNF-------LTKRYDALSEHNLKYHPGEENFKL   82 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEET--TTTE-------EESSTHHHHTHHHHTSTTCCCEEE
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCC--CCCc-------ccCCHHHHHHHHHHhcCCCCCeeC
Confidence            4679999999999999999999999998 59   568888888  7777       44433  3555 4555   55665


Q ss_pred             CCC
Q 044109          152 PLH  154 (236)
Q Consensus       152 ~~C  154 (236)
                      .++
T Consensus        83 ~~~   85 (102)
T 2ghf_A           83 TMV   85 (102)
T ss_dssp             EEC
T ss_pred             Ccc
Confidence            553

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.30  E-value=1.4e-13  Score=104.68  Aligned_cols=81  Identities=12%  Similarity=0.035  Sum_probs=68.7

Q ss_pred             CCCceeeccccccccc------CchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc-CCCCCCCC
Q 044109           84 SEQRVFSCNYCQRKFY------SSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS-SISSLPLH  154 (236)
Q Consensus        84 tgekpf~C~~C~k~F~------~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h-kp~~C~~C  154 (236)
                      ..++.+.|.+|.+.|.      ....|..|+ .|++++||.|.  .|++       .|...  |..|+++| +||.|++|
T Consensus        37 ~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~--~C~k-------~f~~~~~l~~H~~~H~~~~~C~~C  106 (129)
T 2wbt_A           37 PEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCP--LCLM-------PFSSSVSLKQHIRYTEHTKVCPVC  106 (129)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECT--TTCC-------EESSHHHHHHHHHHTCCCCBCTTT
T ss_pred             hhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECC--CCCc-------ccCCHhHHHHHHHHCCCCCCCCCC
Confidence            3467889999887776      556666666 69999999999  9999       67665  58899888 99999999


Q ss_pred             CcCCCChhhhHHHhhhcCCC
Q 044109          155 GAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       155 gk~F~~~~~L~~H~~~HkP~  174 (236)
                      |+.|.+...|.+|+++|.+.
T Consensus       107 ~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          107 KKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CCBCSSHHHHHHHHHHTTCC
T ss_pred             CcccCCHHHHHHHHHHHCCc
Confidence            99999999999999999653

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=1.8e-12  Score=88.69  Aligned_cols=60  Identities=25%  Similarity=0.406  Sum_probs=51.2

Q ss_pred             CCCCCCCceeecc--cccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcC
Q 044109           80 NDHPSEQRVFSCN--YCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAA  157 (236)
Q Consensus        80 ~~~htgekpf~C~--~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~  157 (236)
                      +.+|+++++|.|.  .|++.|.....|..|+++|++++||.|.  .|++                              .
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~--~C~~------------------------------~   58 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR--ICMR------------------------------N   58 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECT--TTCC------------------------------E
T ss_pred             hccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECC--CCCc------------------------------h
Confidence            3478999999997  5999999999999999999999888887  5555                              5


Q ss_pred             CCChhhhHHHhhhc
Q 044109          158 YNRSLGIQVHSMIH  171 (236)
Q Consensus       158 F~~~~~L~~H~~~H  171 (236)
                      |.+...|..|+++|
T Consensus        59 f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           59 FSRSDHLTTHIRTH   72 (73)
T ss_dssp             ESCHHHHHHHHTTC
T ss_pred             hCCHHHHHHHHHhc
Confidence            77778888888877

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.7e-12  Score=80.15  Aligned_cols=43  Identities=21%  Similarity=0.378  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~c   46 (46)
T 2emf_A            4 GSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCC--CC
T ss_pred             ccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999998  76

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3e-12  Score=79.90  Aligned_cols=43  Identities=16%  Similarity=0.352  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2em7_A            4 GSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS--SG   46 (46)
T ss_dssp             CCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTT--CC
T ss_pred             CCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.27  E-value=2.9e-12  Score=80.01  Aligned_cols=43  Identities=21%  Similarity=0.361  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2el6_A            4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS--SG   46 (46)
T ss_dssp             CCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCC--CC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.1e-12  Score=79.82  Aligned_cols=43  Identities=19%  Similarity=0.405  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2ytn_A            4 GSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCC--CC
T ss_pred             CcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3e-12  Score=79.93  Aligned_cols=43  Identities=21%  Similarity=0.353  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2elz_A            4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS--SG   46 (46)
T ss_dssp             CSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSC--CC
T ss_pred             CCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCC--CC
Confidence            34899999999999999999999999999999999999999  76

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.27  E-value=3.5e-12  Score=79.49  Aligned_cols=43  Identities=16%  Similarity=0.295  Sum_probs=40.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2el4_A            4 GSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS--SG   46 (46)
T ss_dssp             CCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCT--TC
T ss_pred             ccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.27  E-value=2.9e-12  Score=80.01  Aligned_cols=43  Identities=21%  Similarity=0.372  Sum_probs=40.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2ely_A            4 GSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS--SG   46 (46)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCC--CC
T ss_pred             CCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.27  E-value=3.6e-12  Score=79.50  Aligned_cols=43  Identities=21%  Similarity=0.339  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2em0_A            4 GSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS--SG   46 (46)
T ss_dssp             CCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSS--CC
T ss_pred             cCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.5e-12  Score=79.56  Aligned_cols=43  Identities=19%  Similarity=0.401  Sum_probs=40.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2eml_A            4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS--SG   46 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSS--CC
T ss_pred             cCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3e-12  Score=79.85  Aligned_cols=43  Identities=19%  Similarity=0.369  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2epz_A            4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSC--CC
T ss_pred             CCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.9e-12  Score=79.36  Aligned_cols=43  Identities=19%  Similarity=0.380  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2ytg_A            4 GSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS--SG   46 (46)
T ss_dssp             CCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSC--CC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            45799999999999999999999999999999999999999  76

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.26  E-value=3.7e-12  Score=80.42  Aligned_cols=43  Identities=16%  Similarity=0.343  Sum_probs=41.4

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k  126 (236)
                      .|+++++|.|.+|++.|.....|..|+++|++++||.|.  .|+|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSG--PSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSC--CCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCC--CCCC
Confidence            688999999999999999999999999999999999999  9986

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.1e-12  Score=79.80  Aligned_cols=43  Identities=21%  Similarity=0.401  Sum_probs=40.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2ene_A            4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCC--CC
T ss_pred             ccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=1.8e-12  Score=94.68  Aligned_cols=28  Identities=14%  Similarity=0.170  Sum_probs=21.0

Q ss_pred             CCCCCCCCCcCCCChhhhHHH-hhhcCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVH-SMIHKPS  174 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H-~~~HkP~  174 (236)
                      +||.|.+||+.|.+...|+.| +++|...
T Consensus        61 k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~   89 (96)
T 2ctd_A           61 EMFTCHHCGKQLRSLAGMKYHVMANHNSL   89 (96)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             CCeECCCCCCeeCCHHHHHHHhHHhcCCC
Confidence            445555667778999999999 8999643

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.1e-12  Score=79.87  Aligned_cols=43  Identities=19%  Similarity=0.317  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2ytq_A            4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS--SG   46 (46)
T ss_dssp             SSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCC--CC
T ss_pred             CcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCC--CC
Confidence            34899999999999999999999999999999999999999  76

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.5e-12  Score=79.58  Aligned_cols=43  Identities=19%  Similarity=0.367  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~c   46 (46)
T 2eq0_A            4 GSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCS--CC
T ss_pred             CcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            35799999999999999999999999999999999999999  76

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.26  E-value=3.3e-12  Score=79.70  Aligned_cols=43  Identities=21%  Similarity=0.418  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~c   46 (46)
T 2ema_A            4 GSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSS--CC
T ss_pred             ccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=3e-12  Score=79.12  Aligned_cols=42  Identities=26%  Similarity=0.440  Sum_probs=40.2

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      .+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   44 (44)
T 2emx_A            3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS--SG   44 (44)
T ss_dssp             CCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCC--CC
T ss_pred             CCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCC--CC
Confidence            4799999999999999999999999999999999999998  76

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.4e-12  Score=79.55  Aligned_cols=43  Identities=16%  Similarity=0.396  Sum_probs=40.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2eq4_A            4 GSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS--SG   46 (46)
T ss_dssp             CCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCC--CC
T ss_pred             cccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.26  E-value=4.2e-12  Score=79.09  Aligned_cols=43  Identities=19%  Similarity=0.366  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2em9_A            4 GSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS--SG   46 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTT--CC
T ss_pred             CCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.5e-12  Score=79.45  Aligned_cols=43  Identities=19%  Similarity=0.383  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2eoe_A            4 GSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS--SG   46 (46)
T ss_dssp             SSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSC--CC
T ss_pred             CCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            34799999999999999999999999999999999999999  76

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.25  E-value=3.2e-12  Score=79.85  Aligned_cols=43  Identities=19%  Similarity=0.374  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2emk_A            4 GSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS--SG   46 (46)
T ss_dssp             CCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCC--CC
T ss_pred             CCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999998  76

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.1e-12  Score=79.16  Aligned_cols=43  Identities=19%  Similarity=0.269  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2eop_A            4 GSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS--SG   46 (46)
T ss_dssp             CCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCC--CC
T ss_pred             ccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.25  E-value=6.2e-12  Score=85.88  Aligned_cols=60  Identities=22%  Similarity=0.380  Sum_probs=49.7

Q ss_pred             CCCCCceeeccc--ccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCC
Q 044109           82 HPSEQRVFSCNY--CQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYN  159 (236)
Q Consensus        82 ~htgekpf~C~~--C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~  159 (236)
                      .++..++|.|.+  |++.|.....|..|+++|++++||.|.  .                            +.|++.|.
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~----------------------------~~C~k~f~   60 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCS--W----------------------------KGCERRFA   60 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECC--C----------------------------TTCCCEES
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCC--C----------------------------CCCCcccC
Confidence            567889999999  999999999999999999999999986  2                            12444577


Q ss_pred             ChhhhHHHhhhc
Q 044109          160 RSLGIQVHSMIH  171 (236)
Q Consensus       160 ~~~~L~~H~~~H  171 (236)
                      +...|..|+++|
T Consensus        61 ~~~~l~~H~~~H   72 (72)
T 2epa_A           61 RSDELSRHRRTH   72 (72)
T ss_dssp             SHHHHHHHTTTC
T ss_pred             CHHHHHhHhhcC
Confidence            777788887766

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=4.1e-12  Score=79.31  Aligned_cols=43  Identities=23%  Similarity=0.357  Sum_probs=40.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2em5_A            4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCC--CC
T ss_pred             cCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  77

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.3e-12  Score=79.58  Aligned_cols=43  Identities=26%  Similarity=0.382  Sum_probs=40.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2emm_A            4 GSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSS--CC
T ss_pred             cCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  77

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=3.8e-12  Score=79.38  Aligned_cols=43  Identities=23%  Similarity=0.455  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2enc_A            4 GSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS--SG   46 (46)
T ss_dssp             SSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSC--CC
T ss_pred             CCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCC--CC
Confidence            34899999999999999999999999999999999999999  76

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.6e-12  Score=79.52  Aligned_cols=43  Identities=19%  Similarity=0.347  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2emy_A            4 GSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS--SG   46 (46)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSS--CC
T ss_pred             CCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.25  E-value=3.3e-12  Score=83.04  Aligned_cols=55  Identities=15%  Similarity=0.208  Sum_probs=47.4

Q ss_pred             eeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCChhhhHHH
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVH  167 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~~~~L~~H  167 (236)
                      ||.|.+|++.|.....|..|+++|++++||.|.  .|++                              .|.+...|..|
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~------------------------------~f~~~~~l~~H   48 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCT--YCNF------------------------------SFKTKGNLTKH   48 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECS--SSSC------------------------------EESSHHHHHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCC--CCCc------------------------------hhcCHHHHHHH
Confidence            699999999999999999999999999888887  5554                              57788889999


Q ss_pred             hhhcCCC
Q 044109          168 SMIHKPS  174 (236)
Q Consensus       168 ~~~HkP~  174 (236)
                      +++|...
T Consensus        49 ~~~h~~~   55 (57)
T 1bbo_A           49 MKSKAHS   55 (57)
T ss_dssp             HHSSSSC
T ss_pred             HHHhccc
Confidence            9888543

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.8e-12  Score=78.83  Aligned_cols=43  Identities=16%  Similarity=0.271  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2epw_A            4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS--SG   46 (46)
T ss_dssp             CCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCC--CC
T ss_pred             cccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.7e-12  Score=79.43  Aligned_cols=43  Identities=16%  Similarity=0.337  Sum_probs=40.6

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~c   46 (46)
T 2ytj_A            4 GSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS--SG   46 (46)
T ss_dssp             SCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCS--CC
T ss_pred             ccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999998  66

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=4.5e-12  Score=78.98  Aligned_cols=43  Identities=23%  Similarity=0.355  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2en8_A            4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS--SG   46 (46)
T ss_dssp             CCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCS--CC
T ss_pred             cccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999998  76

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.5e-12  Score=79.55  Aligned_cols=43  Identities=16%  Similarity=0.379  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2yu8_A            4 GSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS--SG   46 (46)
T ss_dssp             CCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSC--CC
T ss_pred             CcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCC--CC
Confidence            35899999999999999999999999999999999999999  76

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.8e-12  Score=79.38  Aligned_cols=43  Identities=19%  Similarity=0.351  Sum_probs=40.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2ytd_A            4 GSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS--SG   46 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSS--CC
T ss_pred             ccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.7e-12  Score=79.45  Aligned_cols=43  Identities=21%  Similarity=0.377  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~c   46 (46)
T 2ytk_A            4 GSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCC--CC
T ss_pred             cccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.1e-12  Score=79.26  Aligned_cols=43  Identities=19%  Similarity=0.391  Sum_probs=40.6

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~c   46 (46)
T 2ep2_A            4 GSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS--SG   46 (46)
T ss_dssp             SSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSC--CC
T ss_pred             CCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC--CC
Confidence            34799999999999999999999999999999999999998  76

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.4e-12  Score=79.64  Aligned_cols=43  Identities=23%  Similarity=0.452  Sum_probs=40.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2en6_A            4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS--SG   46 (46)
T ss_dssp             SCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSC--CC
T ss_pred             CCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4e-12  Score=79.28  Aligned_cols=43  Identities=21%  Similarity=0.387  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2ysp_A            4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS--SG   46 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCS--CC
T ss_pred             CcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.1e-12  Score=79.80  Aligned_cols=43  Identities=21%  Similarity=0.375  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~c   46 (46)
T 2emh_A            4 GSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSC--CC
T ss_pred             CCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.5e-12  Score=79.07  Aligned_cols=41  Identities=20%  Similarity=0.403  Sum_probs=39.3

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            4 GSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            45899999999999999999999999999999999999998

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5.4e-12  Score=78.58  Aligned_cols=43  Identities=26%  Similarity=0.441  Sum_probs=40.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2eme_A            4 GSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSC--CC
T ss_pred             CCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.1e-12  Score=79.24  Aligned_cols=43  Identities=19%  Similarity=0.423  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2eoq_A            4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS--SG   46 (46)
T ss_dssp             CCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCC--CC
T ss_pred             CCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            45799999999999999999999999999999999999999  76

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.9e-12  Score=79.27  Aligned_cols=43  Identities=21%  Similarity=0.433  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2ytr_A            4 GSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS--SG   46 (46)
T ss_dssp             SCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSC--CC
T ss_pred             CcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.24  E-value=3.7e-12  Score=79.16  Aligned_cols=43  Identities=19%  Similarity=0.356  Sum_probs=41.1

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIG  125 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~  125 (236)
                      .+|++++||.|.+|++.|.....|..|+++|+++++|.|.  .||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~--~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP--SSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCC--CCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCc--CCC
Confidence            3799999999999999999999999999999999999999  886

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.7e-12  Score=79.51  Aligned_cols=43  Identities=26%  Similarity=0.393  Sum_probs=40.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2eoo_A            4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS--SG   46 (46)
T ss_dssp             CCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCS--CC
T ss_pred             CCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.4e-12  Score=79.60  Aligned_cols=43  Identities=21%  Similarity=0.340  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2emp_A            4 GSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCC--CC
T ss_pred             ccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.7e-12  Score=79.56  Aligned_cols=43  Identities=19%  Similarity=0.302  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2em8_A            4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS--SG   46 (46)
T ss_dssp             CCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSC--CC
T ss_pred             CCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5.4e-12  Score=78.69  Aligned_cols=42  Identities=19%  Similarity=0.418  Sum_probs=40.2

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      .+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS--SG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCC--CC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCC--CC
Confidence            4799999999999999999999999999999999999999  76

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.3e-12  Score=79.84  Aligned_cols=43  Identities=16%  Similarity=0.322  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2ytm_A            4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS--SG   46 (46)
T ss_dssp             CCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCC--CC
T ss_pred             CcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            34899999999999999999999999999999999999999  76

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.23  E-value=8.5e-12  Score=80.86  Aligned_cols=43  Identities=23%  Similarity=0.393  Sum_probs=41.5

Q ss_pred             CCCCCceeecccccccccCchhhhhhhh-ccCCCCCCccCcCCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQN-AHKRERTLAKRGQRIGT  126 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r-~Htgekp~~C~~~~C~k  126 (236)
                      .|++++||.|.+|++.|.....|..|++ +|++++||.|.  .|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~--~C~k   49 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ--VWVS   49 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS--SSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCC--CCCC
Confidence            6889999999999999999999999997 99999999999  9999

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=6.2e-12  Score=78.41  Aligned_cols=43  Identities=23%  Similarity=0.454  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2en1_A            4 GSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS--SG   46 (46)
T ss_dssp             TTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCC--CC
T ss_pred             ccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            35899999999999999999999999999999999999999  76

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=5.2e-12  Score=78.66  Aligned_cols=43  Identities=21%  Similarity=0.362  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C   46 (46)
T 2eov_A            4 GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS--SG   46 (46)
T ss_dssp             CCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSC--CC
T ss_pred             CCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCC--CC
Confidence            45899999999999999999999999999999999999999  76

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=5.1e-12  Score=78.79  Aligned_cols=43  Identities=19%  Similarity=0.300  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2yso_A            4 GSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPS--SG   46 (46)
T ss_dssp             SCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTT--CC
T ss_pred             ccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCC--CC
Confidence            35899999999999999999999999999999999999998  76

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=5.1e-12  Score=83.10  Aligned_cols=55  Identities=27%  Similarity=0.446  Sum_probs=46.6

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCChhhhHH
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQV  166 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~~~~L~~  166 (236)
                      +||.|.+|++.|.....|..|+++|++++||.|.  .|++                              .|.+...|..
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~------------------------------~f~~~~~l~~   48 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNR------------------------------AFTRRDLLIR   48 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECT--TTCC------------------------------EESSHHHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCC--CCCC------------------------------ccCCHHHHHH
Confidence            5899999999999999999999999998888877  5555                              5778888888


Q ss_pred             Hh-hhcCC
Q 044109          167 HS-MIHKP  173 (236)
Q Consensus       167 H~-~~HkP  173 (236)
                      |+ ++|..
T Consensus        49 H~~~~H~~   56 (60)
T 2adr_A           49 HAQKIHSG   56 (60)
T ss_dssp             HHTTTSCC
T ss_pred             HHHHHcCC
Confidence            85 67753

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=6.1e-12  Score=78.53  Aligned_cols=41  Identities=22%  Similarity=0.441  Sum_probs=39.2

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            4 GSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999998

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=8e-12  Score=78.07  Aligned_cols=43  Identities=16%  Similarity=0.305  Sum_probs=40.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhh-ccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQN-AHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r-~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.+|++.|.....|..|++ +|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~--~C   47 (47)
T 2epx_A            4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS--SG   47 (47)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCC--CC
T ss_pred             ccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCC--CC
Confidence            458999999999999999999999999999 99999999999  76

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=9.2e-12  Score=77.69  Aligned_cols=41  Identities=20%  Similarity=0.499  Sum_probs=39.0

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            4 GSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34899999999999999999999999999999999999997

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.2e-12  Score=79.83  Aligned_cols=43  Identities=21%  Similarity=0.373  Sum_probs=40.6

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|+++++|.|.+|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS--SG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCC--CC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC--CC
Confidence            34899999999999999999999999999999999999999  76

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=7.2e-12  Score=76.16  Aligned_cols=39  Identities=26%  Similarity=0.457  Sum_probs=37.5

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCCCcc
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAK  119 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C  119 (236)
                      .+|++++||.|.+|++.|.....|..|+++|++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            479999999999999999999999999999999999998

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=8.5e-12  Score=77.84  Aligned_cols=41  Identities=22%  Similarity=0.414  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            4 GSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             ccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=7.9e-12  Score=78.01  Aligned_cols=41  Identities=22%  Similarity=0.430  Sum_probs=39.2

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            4 GSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             ccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.21  E-value=8.3e-12  Score=76.20  Aligned_cols=40  Identities=23%  Similarity=0.413  Sum_probs=38.2

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      .+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            4799999999999999999999999999999999999994

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=8.6e-12  Score=77.91  Aligned_cols=41  Identities=22%  Similarity=0.459  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            34899999999999999999999999999999999999997

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1e-11  Score=77.37  Aligned_cols=41  Identities=22%  Similarity=0.490  Sum_probs=39.2

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            4 GSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1e-11  Score=75.74  Aligned_cols=40  Identities=15%  Similarity=0.348  Sum_probs=38.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCcc
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAK  119 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C  119 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3479999999999999999999999999999999999998

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=9.8e-12  Score=83.77  Aligned_cols=61  Identities=18%  Similarity=0.223  Sum_probs=51.0

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCCh
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRS  161 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~~  161 (236)
                      ...+++||.|.+|++.|. ...|..|+++ ++++||.|.  .                             .||+.|..+
T Consensus         4 ~~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~--~-----------------------------~C~k~f~~~   50 (66)
T 2eod_A            4 GSSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACP--N-----------------------------QCGVGTVAR   50 (66)
T ss_dssp             SCCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECT--T-----------------------------CCSCCEEET
T ss_pred             ccCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCC--c-----------------------------ccCcccccH
Confidence            356789999999999999 9999999998 887766654  0                             578888888


Q ss_pred             hhhHHHhhhcCCCC
Q 044109          162 LGIQVHSMIHKPSH  175 (236)
Q Consensus       162 ~~L~~H~~~HkP~~  175 (236)
                      ..|..|+++|-|..
T Consensus        51 ~~L~~H~~~hc~~~   64 (66)
T 2eod_A           51 EDLPGHLKDSCNTA   64 (66)
T ss_dssp             TTHHHHHHTTSSSC
T ss_pred             HHHHHHHHhhcccC
Confidence            99999999997654

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=9.8e-12  Score=77.20  Aligned_cols=40  Identities=25%  Similarity=0.458  Sum_probs=38.5

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      .+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            4799999999999999999999999999999999999997

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=7.1e-12  Score=76.51  Aligned_cols=40  Identities=15%  Similarity=0.354  Sum_probs=38.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCcc
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAK  119 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C  119 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            3479999999999999999999999999999999999998

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=9.2e-12  Score=75.89  Aligned_cols=40  Identities=23%  Similarity=0.416  Sum_probs=38.1

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      .+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             cCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4799999999999999999999999999999999999984

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.1e-11  Score=77.20  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            4 GSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1e-11  Score=77.52  Aligned_cols=41  Identities=22%  Similarity=0.491  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.2e-11  Score=77.07  Aligned_cols=41  Identities=20%  Similarity=0.434  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            4 GSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.19  E-value=1e-11  Score=77.46  Aligned_cols=41  Identities=24%  Similarity=0.469  Sum_probs=39.2

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            4 GSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.4e-11  Score=76.71  Aligned_cols=41  Identities=20%  Similarity=0.465  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            4 GSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            45899999999999999999999999999999999999997

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=75.65  Aligned_cols=40  Identities=18%  Similarity=0.412  Sum_probs=38.0

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCcc
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAK  119 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C  119 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            3479999999999999999999999999999999999998

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.4e-11  Score=76.73  Aligned_cols=41  Identities=20%  Similarity=0.418  Sum_probs=39.2

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            4 GSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.1e-11  Score=76.32  Aligned_cols=41  Identities=22%  Similarity=0.342  Sum_probs=38.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            4 GSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            35799999999999999999999999999999999999995

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.2e-11  Score=77.10  Aligned_cols=41  Identities=22%  Similarity=0.478  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            4 GSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.1e-11  Score=77.40  Aligned_cols=41  Identities=17%  Similarity=0.336  Sum_probs=39.0

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            34799999999999999999999999999999999999997

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.1e-11  Score=76.40  Aligned_cols=41  Identities=17%  Similarity=0.360  Sum_probs=38.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            4 GSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             ccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            45899999999999999999999999999999999999995

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.3e-11  Score=76.91  Aligned_cols=41  Identities=22%  Similarity=0.453  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             ccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.4e-11  Score=76.70  Aligned_cols=41  Identities=24%  Similarity=0.471  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            4 GSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            35799999999999999999999999999999999999997

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.18  E-value=1.1e-11  Score=75.49  Aligned_cols=40  Identities=15%  Similarity=0.343  Sum_probs=38.0

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCcc
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAK  119 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C  119 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|
T Consensus         3 ~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            3 SGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            3479999999999999999999999999999999999998

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.4e-11  Score=76.77  Aligned_cols=41  Identities=22%  Similarity=0.493  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            45799999999999999999999999999999999999997

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.6e-11  Score=76.62  Aligned_cols=41  Identities=24%  Similarity=0.511  Sum_probs=39.0

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             ccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            45799999999999999999999999999999999999997

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.7e-11  Score=75.65  Aligned_cols=41  Identities=20%  Similarity=0.373  Sum_probs=38.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            4 GSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             ccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            45899999999999999999999999999999999999995

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.1e-11  Score=77.25  Aligned_cols=41  Identities=27%  Similarity=0.542  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            4 GSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.6e-11  Score=75.76  Aligned_cols=41  Identities=22%  Similarity=0.427  Sum_probs=38.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             SCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             ccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            45799999999999999999999999999999999999984

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.3e-11  Score=76.84  Aligned_cols=41  Identities=22%  Similarity=0.477  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            4 GSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             cCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            35899999999999999999999999999999999999997

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.6e-11  Score=76.39  Aligned_cols=41  Identities=20%  Similarity=0.433  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            4 GSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             ccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.2e-11  Score=76.98  Aligned_cols=41  Identities=20%  Similarity=0.489  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.3e-11  Score=76.94  Aligned_cols=41  Identities=20%  Similarity=0.464  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            4 GSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            45799999999999999999999999999999999999997

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.2e-11  Score=76.19  Aligned_cols=40  Identities=20%  Similarity=0.370  Sum_probs=38.4

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      .+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            4799999999999999999999999999999999999997

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.2e-11  Score=77.10  Aligned_cols=41  Identities=24%  Similarity=0.466  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             cccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.4e-11  Score=76.91  Aligned_cols=41  Identities=22%  Similarity=0.448  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            4 GSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             ccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.5e-11  Score=75.64  Aligned_cols=41  Identities=24%  Similarity=0.456  Sum_probs=38.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            4 GSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             SSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             ccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            35899999999999999999999999999999999999995

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.4e-11  Score=75.95  Aligned_cols=41  Identities=22%  Similarity=0.452  Sum_probs=38.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            4 GSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999984

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=3e-12  Score=93.29  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=36.1

Q ss_pred             CCCCC-CceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           81 DHPSE-QRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        81 ~~htg-ekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      .+|++ +++|.|.+|++.|.+...|..|+++|++++|+...
T Consensus        46 ~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           46 EVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             HHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             HHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCCC
Confidence            35777 89999999999999999999999999999997655

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.4e-11  Score=76.17  Aligned_cols=41  Identities=22%  Similarity=0.297  Sum_probs=38.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            4 GSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            35799999999999999999999999999999999999995

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=2.4e-11  Score=75.73  Aligned_cols=41  Identities=24%  Similarity=0.536  Sum_probs=39.0

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCC-CCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKR-ERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htg-ekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++ ++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            4 GSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             ccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4589999999999999999999999999999999 9999997

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.3e-11  Score=76.87  Aligned_cols=41  Identities=22%  Similarity=0.361  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            4 GSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=76.80  Aligned_cols=41  Identities=20%  Similarity=0.464  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            4 GSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            35899999999999999999999999999999999999997

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=4.1e-12  Score=94.45  Aligned_cols=85  Identities=5%  Similarity=-0.106  Sum_probs=71.2

Q ss_pred             CchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--ccccccc--c---CC-CCCCCCCcCC--CChhhhHHHhh
Q 044109          100 SSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHY--S---SI-SSLPLHGAAY--NRSLGIQVHSM  169 (236)
Q Consensus       100 ~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~--h---kp-~~C~~Cgk~F--~~~~~L~~H~~  169 (236)
                      ....|..|+++|++++||.|.  .|++       .|...  |..|+++  |   ++ +.|++|++.|  .....|..|++
T Consensus         3 s~~~l~~H~~~H~~~~~~~C~--~C~k-------~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~   73 (115)
T 2dmi_A            3 SGSSGKLYGSIFTGASKFRCK--DCSA-------AYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEG   73 (115)
T ss_dssp             CCCCCCCCCCCCCCCCSEEBS--SSSC-------EESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCC
T ss_pred             cchhhhhheeeeCCCCCEECC--ccCc-------hhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhh
Confidence            456799999999999999999  9999       66665  5788876  5   44 4599999999  89999999999


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCC
Q 044109          170 IHKPSHTSTSHGNGNIYGHNNWSR  193 (236)
Q Consensus       170 ~HkP~~~~~~~~~g~~~~~~~~~r  193 (236)
                      +|.......|..||+.|.....++
T Consensus        74 ~H~~~~~~~C~~C~k~f~~~~~L~   97 (115)
T 2dmi_A           74 KEDAQKVLKCMYCGHSFESLQDLS   97 (115)
T ss_dssp             SCCCCSSCBCSSSCCBCSSHHHHH
T ss_pred             ccCCCcceECCCCCCccCCHHHHH
Confidence            998888888999999888644433

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.9e-11  Score=83.05  Aligned_cols=62  Identities=11%  Similarity=0.064  Sum_probs=47.0

Q ss_pred             CCCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCccccccccc---CCCCCCCC
Q 044109           79 TNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYS---SISSLPLH  154 (236)
Q Consensus        79 ~~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~h---kp~~C~~C  154 (236)
                      ...+|++++||.|.+|++.|.....|..       +++|.|.  .|++     .|.....+..|+++|   +||.|++|
T Consensus         9 H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~--~C~~-----~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            9 RQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCE--KCRK-----DSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCH--HHHH-----TCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             HHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCC--CCCh-----hhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            3457888888888888888888888876       7888888  8888     223333457788877   78888877

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.2e-11  Score=75.74  Aligned_cols=41  Identities=20%  Similarity=0.451  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            4 GSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             ccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.4e-11  Score=74.42  Aligned_cols=41  Identities=20%  Similarity=0.327  Sum_probs=38.5

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            4 GSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            45899999999999999999999999999999999999873

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.3e-11  Score=76.99  Aligned_cols=41  Identities=32%  Similarity=0.567  Sum_probs=39.1

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            45899999999999999999999999999999999999997

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.2e-11  Score=75.57  Aligned_cols=43  Identities=19%  Similarity=0.383  Sum_probs=40.4

Q ss_pred             CCCCCCCceeecc--cccccccCchhhhhhhhccCCCCCCccCcCCC
Q 044109           80 NDHPSEQRVFSCN--YCQRKFYSSQALGGHQNAHKRERTLAKRGQRI  124 (236)
Q Consensus        80 ~~~htgekpf~C~--~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C  124 (236)
                      ..+|++++||.|.  .|++.|.....|..|+++|++++||.|.  .|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS--SG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSC--CC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCC--CC
Confidence            3489999999998  8999999999999999999999999998  76

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.12  E-value=7e-12  Score=91.47  Aligned_cols=58  Identities=14%  Similarity=0.127  Sum_probs=51.4

Q ss_pred             CCCCCceeecccccccc-cCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccc-cccc--CCC
Q 044109           82 HPSEQRVFSCNYCQRKF-YSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQ-NHYS--SIS  149 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F-~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H-~r~h--kp~  149 (236)
                      .|+++++|.|.+|++.| .+...|..|+++| +++||.|.  .|++       .|...  |..| +++|  +||
T Consensus        28 ~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~--~Cgk-------~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           28 EIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCH--HCGK-------QLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             HHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCS--SSCC-------CCSSHHHHHHHHHHHTCCCSS
T ss_pred             HhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECC--CCCC-------eeCCHHHHHHHhHHhcCCCCC
Confidence            46788999999999999 9999999999999 99999999  9999       77665  5889 8888  554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.11  E-value=2.9e-11  Score=83.68  Aligned_cols=64  Identities=16%  Similarity=0.180  Sum_probs=54.6

Q ss_pred             hhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          105 GGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       105 ~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      ..+...+.+++||.|.  .|++       .|...  |..|+++|   +||.|++|++.|.+...|..|+++|....+.
T Consensus         7 ~~~~~~~~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~   75 (77)
T 2cot_A            7 GRSEWQQRERRRYKCD--ECGK-------SFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS   75 (77)
T ss_dssp             CCCCSCCCCSCSSBCS--SSCC-------BCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCC
T ss_pred             CCCcCcCCCCCCEECC--CCCc-------ccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            3455678899999999  9999       67665  58899988   8999999999999999999999999765543

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.10  E-value=3.5e-11  Score=72.32  Aligned_cols=38  Identities=42%  Similarity=0.894  Sum_probs=35.5

Q ss_pred             CCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           83 PSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        83 htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      |++++||.|.+|++.|.....|..|+++|++++||.+.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccceec
Confidence            67899999999999999999999999999999999875

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=1e-10  Score=83.71  Aligned_cols=70  Identities=17%  Similarity=0.216  Sum_probs=57.1

Q ss_pred             CceeecccccccccCchhhhhhhhc-cCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCChhhh
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNA-HKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGI  164 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~-Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~~~~L  164 (236)
                      ...|.|..|++.|.....|..|+++ |+++++..+.  .|                      ++|.|++|++.|.....|
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~--~c----------------------~~~~C~~C~k~f~~~~~L   78 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH--VC----------------------YWEECPREGKSFKAKYKL   78 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCC--CC----------------------CCTTCSSTTCCCSSHHHH
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCcc--ce----------------------eccCCCCCCcccCCHHHH
Confidence            3457899999999999999999998 9998875555  44                      246799999999999999


Q ss_pred             HHHhhhcCCCCCCCC
Q 044109          165 QVHSMIHKPSHTSTS  179 (236)
Q Consensus       165 ~~H~~~HkP~~~~~~  179 (236)
                      ..|+++|.......|
T Consensus        79 ~~H~~~H~~~k~~~C   93 (95)
T 2ej4_A           79 VNHIRVHTGEKSGPS   93 (95)
T ss_dssp             HHHHHHHHTCCCCSS
T ss_pred             HHHHHhcCCCCCCCC
Confidence            999999966554443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.07  E-value=3.9e-11  Score=87.66  Aligned_cols=61  Identities=20%  Similarity=0.467  Sum_probs=54.8

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSL  151 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C  151 (236)
                      +|+++++|.|.+|++.|.....|..|+++|++++||.|.  .|++       .|...  |..|+++|   +||.+
T Consensus        39 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           39 THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ--ECGK-------GFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCS--SSCC-------CCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             HcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECC--CcCC-------cccCHHHHHHHHHHhCCCCCCcC
Confidence            688899999999999999999999999999999999999  9999       66665  58899888   67654

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=7.8e-12  Score=84.95  Aligned_cols=67  Identities=15%  Similarity=0.075  Sum_probs=55.6

Q ss_pred             CchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--ccccccccCCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          100 SSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       100 ~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~hkp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      +...|..|+++|++++||.|.  .|++       .|...  +..    .++|.|++||+.|.+...|..|+++|......
T Consensus         2 ~~~~l~~H~~~h~~~~~~~C~--~C~k-------~f~~~~~l~~----~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~   68 (73)
T 2ctu_A            2 SSGSSGKRQKIHLGDRSQKCS--KCGI-------IFIRRSTLSR----RKTPMCEKCRKDSCQEAALNKDEGNESGKKTS   68 (73)
T ss_dssp             CCCSCCCCCCCCCCCSEEECS--SSCC-------EEECCCCCCC----SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCS
T ss_pred             cchhHHHHHHHhCCCCCeeCC--cccc-------hhCCHHHhCc----CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCC
Confidence            456799999999999999999  9999       55443  222    58999999999999999999999999766555


Q ss_pred             CC
Q 044109          178 TS  179 (236)
Q Consensus       178 ~~  179 (236)
                      .|
T Consensus        69 ~C   70 (73)
T 2ctu_A           69 GP   70 (73)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.05  E-value=1.3e-10  Score=83.44  Aligned_cols=45  Identities=24%  Similarity=0.418  Sum_probs=41.8

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k  126 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.|.  .|.+
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~--~~~~   61 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAK--RQER   61 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCC--CCSC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccc--hhhh
Confidence            34799999999999999999999999999999999999999  7665

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.02  E-value=8.9e-11  Score=81.14  Aligned_cols=70  Identities=16%  Similarity=0.165  Sum_probs=60.1

Q ss_pred             cCCCCCCccCcCCCCCccCCCCcccCCc--cccccc-cc---CCCCCCC--CCcCCCChhhhHHHhhhcCCCCCCCCCCC
Q 044109          111 HKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNH-YS---SISSLPL--HGAAYNRSLGIQVHSMIHKPSHTSTSHGN  182 (236)
Q Consensus       111 Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r-~h---kp~~C~~--Cgk~F~~~~~L~~H~~~HkP~~~~~~~~~  182 (236)
                      .+++++|.|..+.|++       .|...  |..|++ .|   ++|.|++  |++.|.+...|+.|+++|.......|..|
T Consensus         2 s~~~~~~~C~~~~C~~-------~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   74 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGR-------IFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS   74 (79)
T ss_dssp             CSCCSSEECSSTTTCC-------EESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSS
T ss_pred             CCCCCCccCCCCCCcC-------ccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCC
Confidence            3678999999556999       67665  588887 57   8999999  99999999999999999988888888889


Q ss_pred             CCCCC
Q 044109          183 GNIYG  187 (236)
Q Consensus       183 g~~~~  187 (236)
                      |+.|+
T Consensus        75 ~k~F~   79 (79)
T 2dlk_A           75 GPSSG   79 (79)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            98774

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.99  E-value=1.5e-10  Score=79.33  Aligned_cols=39  Identities=26%  Similarity=0.266  Sum_probs=36.4

Q ss_pred             CCCCCceeeccc--ccccccCchhhhhhh-hccCCCCCCccC
Q 044109           82 HPSEQRVFSCNY--CQRKFYSSQALGGHQ-NAHKRERTLAKR  120 (236)
Q Consensus        82 ~htgekpf~C~~--C~k~F~~~~~L~~H~-r~Htgekp~~C~  120 (236)
                      ..+++|||+|.+  |+|+|.+.++|.+|+ ++|+++|||.|.
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            578999999976  999999999999997 789999999997

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.99  E-value=4.3e-11  Score=87.89  Aligned_cols=75  Identities=7%  Similarity=-0.047  Sum_probs=65.0

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc-CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS-SISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGN  182 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h-kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~~~~~  182 (236)
                      .++++|++++||.|.  .|++       .|...  |..|+++| ++|.|++|++.|.....|..|++ |.......|..|
T Consensus         6 s~~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C   75 (107)
T 1wjp_A            6 SGASPVENKEVYQCR--LCNA-------KLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLEC   75 (107)
T ss_dssp             CCCCCCCCCCCCBCT--TTCC-------BCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGG
T ss_pred             ccCcccCCCcCeECC--CCCC-------ccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccc
Confidence            467899999999999  9999       66655  58898888 99999999999999999999995 987777888889


Q ss_pred             CCCCCCCC
Q 044109          183 GNIYGHNN  190 (236)
Q Consensus       183 g~~~~~~~  190 (236)
                      ++.|....
T Consensus        76 ~~~f~~~~   83 (107)
T 1wjp_A           76 MRTFKSSF   83 (107)
T ss_dssp             TEECSSHH
T ss_pred             cchhCCHH
Confidence            98887543

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.99  E-value=2.1e-10  Score=76.45  Aligned_cols=44  Identities=16%  Similarity=0.170  Sum_probs=39.8

Q ss_pred             CCCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCc
Q 044109           79 TNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTY  127 (236)
Q Consensus        79 ~~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~  127 (236)
                      ...+|++++||.|.+|++.|.....|.   ++|++++||.|.  .|++.
T Consensus         5 h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~--~C~k~   48 (62)
T 1vd4_A            5 DERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCT--FCHTE   48 (62)
T ss_dssp             CSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCS--SSCCB
T ss_pred             HHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECC--CCCCc
Confidence            345899999999999999999998886   899999999999  99993

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.97  E-value=2.9e-10  Score=66.30  Aligned_cols=35  Identities=23%  Similarity=0.436  Sum_probs=33.2

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERT  116 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp  116 (236)
                      +|++++||.|.+|++.|.....|..|+++|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            48899999999999999999999999999999886

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.5e-10  Score=67.40  Aligned_cols=36  Identities=22%  Similarity=0.504  Sum_probs=34.1

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCCCC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERT  116 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp  116 (236)
                      .+|++++||.|.+|++.|.....|..|+++|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            379999999999999999999999999999999986

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.96  E-value=2.7e-10  Score=66.22  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=33.2

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERT  116 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp  116 (236)
                      +|++++||.|.+|++.|.....|..|+++|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            48899999999999999999999999999999986

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.96  E-value=2.6e-10  Score=81.63  Aligned_cols=56  Identities=16%  Similarity=0.185  Sum_probs=51.6

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS  146 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h  146 (236)
                      +|+++++|.|.+|++.|.....|..|+++|+++++|.|.  .|++       .|...  |..|+++|
T Consensus        30 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h   87 (96)
T 2dmd_A           30 CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ--ICPY-------ASRNSSQLTVHLRSH   87 (96)
T ss_dssp             GCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECS--SSSC-------EESSHHHHHHHHTTC
T ss_pred             hcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCC--CCCC-------ccCCHHHHHHHHHHh
Confidence            688899999999999999999999999999999999999  9999       66665  58888887

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=98.90  E-value=1.5e-10  Score=81.77  Aligned_cols=56  Identities=25%  Similarity=0.430  Sum_probs=50.8

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS  146 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h  146 (236)
                      +|+++++|.|.+|++.|.+...|..|+++|++++||.|.  .|++       .|...  |..|+++|
T Consensus        28 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~H   85 (90)
T 1a1h_A           28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD--ICGR-------KFARSDERKRHTKIH   85 (90)
T ss_dssp             HHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECT--TTCC-------EESSHHHHHHHHGGG
T ss_pred             HhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCC--CCCc-------hhCCHHHHHHHHHHh
Confidence            578889999999999999999999999999999999999  9999       66665  58888776

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=98.88  E-value=1.3e-10  Score=80.63  Aligned_cols=56  Identities=23%  Similarity=0.482  Sum_probs=49.7

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS  146 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h  146 (236)
                      +|.++++|.|.+|++.|.....|..|+++|++++||.|.  .|++       .|...  |..|+++|
T Consensus        23 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           23 IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ--VCGK-------AFSQSSNLITHSRKH   80 (82)
T ss_dssp             HHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECT--TTSC-------EESSHHHHHHHHHHH
T ss_pred             HcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCC--Ccch-------hhCChHHHHHHHHhh
Confidence            577889999999999999999999999999999999999  9999       66665  47777654

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.88  E-value=4.5e-10  Score=72.45  Aligned_cols=39  Identities=13%  Similarity=0.221  Sum_probs=36.4

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCCCCCc
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLA  118 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~  118 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|++++||.
T Consensus        16 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A           16 RSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             HHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             HHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            447899999999999999999999999999999999984

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.87  E-value=6e-10  Score=64.52  Aligned_cols=33  Identities=24%  Similarity=0.458  Sum_probs=31.3

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCCCCcc
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAK  119 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C  119 (236)
                      +||.|.+|++.|.....|..|+++|++++||.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999999999864

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=98.87  E-value=4.9e-10  Score=78.89  Aligned_cols=56  Identities=20%  Similarity=0.364  Sum_probs=50.1

Q ss_pred             CCCCCceeecc--cccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc
Q 044109           82 HPSEQRVFSCN--YCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS  146 (236)
Q Consensus        82 ~htgekpf~C~--~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h  146 (236)
                      +|+++++|.|.  .|++.|.....|..|+++|++++||.|.  .|++       .|...  |..|+++|
T Consensus        29 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ--KCDR-------AFSRSDHLALHMKRH   88 (89)
T ss_dssp             TSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECS--SSSC-------EESSHHHHHHHGGGG
T ss_pred             hcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCC--CCCc-------ccCCHHHHHHHHHhh
Confidence            68899999997  5999999999999999999999999999  9999       66665  57787765

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.87  E-value=7.5e-10  Score=79.01  Aligned_cols=70  Identities=16%  Similarity=0.175  Sum_probs=60.5

Q ss_pred             CCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCcCCCChhhhHHHhhhcCCC--CCCCCCCCCC
Q 044109          112 KRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGAAYNRSLGIQVHSMIHKPS--HTSTSHGNGN  184 (236)
Q Consensus       112 tgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk~F~~~~~L~~H~~~HkP~--~~~~~~~~g~  184 (236)
                      +++++|.|.  .|++       .|...  |..|+++|   ++|.|++|++.|.....|..|+++|...  ....|..|+.
T Consensus         3 ~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~   73 (95)
T 2yt9_A            3 SGSSGVACE--ICGK-------IFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK   73 (95)
T ss_dssp             CCCSCEECS--SSCC-------EESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCC
T ss_pred             CCCCCeECC--CCCC-------ccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccc
Confidence            578999999  9999       66655  58888888   8999999999999999999999999775  6778889998


Q ss_pred             CCCCCC
Q 044109          185 IYGHNN  190 (236)
Q Consensus       185 ~~~~~~  190 (236)
                      .|....
T Consensus        74 ~f~~~~   79 (95)
T 2yt9_A           74 GFSRPD   79 (95)
T ss_dssp             CBSSHH
T ss_pred             hhCCHH
Confidence            887543

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.83  E-value=1.1e-09  Score=65.09  Aligned_cols=36  Identities=22%  Similarity=0.496  Sum_probs=33.7

Q ss_pred             CCCCceeecc--cccccccCchhhhhhhhccCCCCCCc
Q 044109           83 PSEQRVFSCN--YCQRKFYSSQALGGHQNAHKRERTLA  118 (236)
Q Consensus        83 htgekpf~C~--~C~k~F~~~~~L~~H~r~Htgekp~~  118 (236)
                      |++++||.|.  .|++.|.....|..|+++|++++||.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            6789999999  59999999999999999999999984

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=1.7e-09  Score=63.40  Aligned_cols=34  Identities=24%  Similarity=0.444  Sum_probs=32.3

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      .|++++||.|.+|++.|.....|..|+++|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            6889999999999999999999999999999875

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.5e-09  Score=63.50  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=32.4

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +|++++||.|.+|++.|.....|..|+++|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            6899999999999999999999999999999875

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.82  E-value=3.1e-10  Score=85.92  Aligned_cols=54  Identities=22%  Similarity=0.213  Sum_probs=48.3

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS  146 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h  146 (236)
                      .|++++||.|.+|++.|.....|..|+++|  ++||.|.  .|++       .|...  |..|++.|
T Consensus        68 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~--~C~k-------~f~~~~~l~~H~~~h  123 (129)
T 2wbt_A           68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCP--VCKK-------EFTSTDSALDHVCKK  123 (129)
T ss_dssp             HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCT--TTCC-------BCSSHHHHHHHHHHT
T ss_pred             HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCC--CCCc-------ccCCHHHHHHHHHHH
Confidence            478899999999999999999999999999  8999999  9999       67665  57787765

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.81  E-value=6.7e-10  Score=81.64  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=50.4

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS  146 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h  146 (236)
                      +|.++++|.|.+|++.|.....|..|+++|+++++|.|.  .|++       .|...  |..|++.|
T Consensus        31 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           31 MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN--ICAK-------RFMWRDSFHRHVTSC   88 (110)
T ss_dssp             HHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECS--SSCC-------EESCHHHHHHHHHHH
T ss_pred             HcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCC--CCcc-------hhcCHHHHHHHHHHc
Confidence            678899999999999999999999999999999999999  9999       67665  57787665

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.9e-09  Score=63.20  Aligned_cols=34  Identities=29%  Similarity=0.520  Sum_probs=32.4

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +|++++||+|.+|++.|.....|..|+++|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            6899999999999999999999999999999875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.7e-09  Score=63.76  Aligned_cols=34  Identities=29%  Similarity=0.503  Sum_probs=32.3

Q ss_pred             CCCCCceeecccccccccCc-hhhhhhhhccCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSS-QALGGHQNAHKRER  115 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~-~~L~~H~r~Htgek  115 (236)
                      +|++++||.|.+|++.|... ..|..|+++|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            78999999999999999999 99999999999875

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.7e-09  Score=65.39  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=31.4

Q ss_pred             CCCCCceeeccc--ccccccCchhhhhhhhccCCCC
Q 044109           82 HPSEQRVFSCNY--CQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        82 ~htgekpf~C~~--C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      .++++|||+|.+  |++.|...+.|.+|+++|+++.
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            578999999986  9999999999999999999863

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.80  E-value=7.5e-10  Score=73.86  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=32.3

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +|+|++||.|.+|++.|.....|..|+++|+||+
T Consensus        26 ~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C           26 AHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             HHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             HhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            7999999999999999999999999999999985

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=98.79  E-value=9.7e-10  Score=79.05  Aligned_cols=56  Identities=14%  Similarity=0.301  Sum_probs=49.6

Q ss_pred             CCCCCceeecc--cccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc
Q 044109           82 HPSEQRVFSCN--YCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS  146 (236)
Q Consensus        82 ~htgekpf~C~--~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h  146 (236)
                      +|+++++|.|.  .|++.|.....|..|+++|++++||.|.  .|++       .|...  |..|+++|
T Consensus        39 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~-------~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           39 THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG--VCNR-------SFSRSDHLALHMKRH   98 (100)
T ss_dssp             HHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCS--SSCC-------BCSSHHHHHHHHHHH
T ss_pred             HhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECC--CCcC-------ccCCHHHHHHHHHHh
Confidence            68889999997  5999999999999999999999999999  9999       66665  57777665

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.79  E-value=3.1e-09  Score=62.51  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=32.5

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htge  114 (236)
                      ..+|++++||.|.+|++.|.....|..|+++|+++
T Consensus         3 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            34799999999999999999999999999999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2.4e-09  Score=62.54  Aligned_cols=34  Identities=26%  Similarity=0.497  Sum_probs=32.4

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +|+++++|.|.+|++.|.....|..|+++|++|+
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            6889999999999999999999999999999985

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=3.4e-09  Score=62.05  Aligned_cols=34  Identities=29%  Similarity=0.705  Sum_probs=32.0

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      .|++++||.|.+|++.|.....|..|+++|+++|
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            5788999999999999999999999999999875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.75  E-value=1e-09  Score=63.03  Aligned_cols=32  Identities=28%  Similarity=0.491  Sum_probs=30.3

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCCCCc
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLA  118 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~  118 (236)
                      +||.|.+|++.|.....|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   32 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVALG   32 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSCC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCCC
Confidence            58999999999999999999999999999973

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.74  E-value=1.2e-09  Score=80.75  Aligned_cols=64  Identities=11%  Similarity=-0.087  Sum_probs=52.4

Q ss_pred             hhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccc-cc------CCCCCCCCCcCCCChhhhHHH-hhhcCCCCCC
Q 044109          108 QNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNH-YS------SISSLPLHGAAYNRSLGIQVH-SMIHKPSHTS  177 (236)
Q Consensus       108 ~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r-~h------kp~~C~~Cgk~F~~~~~L~~H-~~~HkP~~~~  177 (236)
                      +..-+|++||.|.  .|++       .|...  |..|++ +|      +||.|++||+.|.+...|..| +++|....++
T Consensus        10 ~~~~~gekpy~C~--~Cgk-------~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy   80 (102)
T 2ghf_A           10 QQNKKVEGGYECK--YCTF-------QTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENF   80 (102)
T ss_dssp             TTCCCCCSSEECS--SCSC-------EESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCE
T ss_pred             cccCCCCcCcCCC--CCCC-------ccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCe
Confidence            3456799999999  9999       66665  577775 34      799999999999999999999 8999877665


Q ss_pred             CCC
Q 044109          178 TSH  180 (236)
Q Consensus       178 ~~~  180 (236)
                      .|.
T Consensus        81 ~C~   83 (102)
T 2ghf_A           81 KLT   83 (102)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            543

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.74  E-value=3.4e-09  Score=66.80  Aligned_cols=35  Identities=17%  Similarity=0.502  Sum_probs=30.4

Q ss_pred             CCCCCceeecccccccccCchhhhhhhh-ccCCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQN-AHKRERT  116 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r-~Htgekp  116 (236)
                      +|+++|||.|.+|++.|.....|..|++ +|+++.+
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            5899999999999999999999999999 9999854

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=6.2e-09  Score=61.57  Aligned_cols=34  Identities=18%  Similarity=0.361  Sum_probs=31.8

Q ss_pred             CCCCCCceeecccccccccCchhhhhh-hhccCCC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGH-QNAHKRE  114 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H-~r~Htge  114 (236)
                      .+|++++||.|.+|++.|.....|..| +++|+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            379999999999999999999999999 9999875

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.69  E-value=2.9e-10  Score=75.81  Aligned_cols=53  Identities=2%  Similarity=-0.013  Sum_probs=41.7

Q ss_pred             hhhhhhccCCCCCCccCcCCCCCccCCCCcccCCccccccccc---CCCCCCCCCcCCCChhhhHH
Q 044109          104 LGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYS---SISSLPLHGAAYNRSLGIQV  166 (236)
Q Consensus       104 L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~h---kp~~C~~Cgk~F~~~~~L~~  166 (236)
                      |..|+++|++++||.|.  .|++       .|..... +.++|   +||.|++||+.|....++..
T Consensus         2 L~~h~~~H~~~k~~~C~--~C~k-------~F~~~~~-l~~~H~~~k~~~C~~C~k~f~~~~~~~~   57 (62)
T 1vd4_A            2 IETDERDSTNRASFKCP--VCSS-------TFTDLEA-NQLFDPMTGTFRCTFCHTEVEEDESAMP   57 (62)
T ss_dssp             CCCCSSSCCSSSEEECS--SSCC-------EEEHHHH-HHHEETTTTEEBCSSSCCBCEECTTCSC
T ss_pred             hhhHHHHcCCCCCccCC--CCCc-------hhccHHH-hHhhcCCCCCEECCCCCCccccCccccc
Confidence            67899999999999999  9999       6655421 11455   89999999999988766543

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.67  E-value=6.1e-09  Score=61.62  Aligned_cols=34  Identities=24%  Similarity=0.530  Sum_probs=31.5

Q ss_pred             CCCCCceeeccc--ccccccCchhhhhhhhccCCCC
Q 044109           82 HPSEQRVFSCNY--CQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        82 ~htgekpf~C~~--C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      .|++++||.|.+  |++.|...+.|..|+++|+++|
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            478999999995  9999999999999999999985

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.66  E-value=6.3e-09  Score=64.38  Aligned_cols=40  Identities=15%  Similarity=0.078  Sum_probs=23.8

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCR--ECDM-------CFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCS--SSCC-------CCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECC--CCCc-------ccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            466777777777777  6666       44433  35555555   55665554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=7.5e-09  Score=64.04  Aligned_cols=40  Identities=10%  Similarity=0.062  Sum_probs=21.9

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCN--ECGK-------VFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCT--TTCC-------BCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECC--CCCC-------eeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            466666666666666  6665       33333  34455544   45555544

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.63  E-value=3.9e-08  Score=66.77  Aligned_cols=42  Identities=21%  Similarity=0.380  Sum_probs=35.9

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k  126 (236)
                      .++++|||+|.+|+|.|.....|..|+++|++++ ..+.  .++.
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~--~~~~   48 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLG--YIDL   48 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCC--SCCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-cccc--cccC
Confidence            5889999999999999999999999999999975 3455  4443

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=7.7e-09  Score=63.90  Aligned_cols=40  Identities=15%  Similarity=0.141  Sum_probs=22.8

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCN--ECGK-------AFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCT--TTCC-------CCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCC--CCCC-------ccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            466667777666666  6666       33333  35555555   55555554

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=9.5e-09  Score=63.63  Aligned_cols=40  Identities=8%  Similarity=0.052  Sum_probs=24.7

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~--~C~k-------~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCE--DCGK-------GYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCS--SSCC-------BCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCc--ccCc-------hhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            466777777777777  6766       44443  35555555   56666655

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=8.3e-09  Score=63.82  Aligned_cols=40  Identities=13%  Similarity=0.092  Sum_probs=23.2

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCI--DCGK-------AFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCT--TTCC-------CBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECC--CCCc-------eeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466677777777766  6666       44333  35555555   55555554

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=8.7e-09  Score=63.64  Aligned_cols=19  Identities=16%  Similarity=0.200  Sum_probs=11.9

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      +|+++|++++||.|.  .|++
T Consensus         2 ~H~~~H~~~~~~~C~--~C~k   20 (46)
T 2eop_A            2 SSGSSGTGEKPHECR--ECGK   20 (46)
T ss_dssp             CCCCSCCCCCSCBCT--TTCC
T ss_pred             CCccccCCCCCeeCC--CCCc
Confidence            466666666666666  5665

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=9.3e-09  Score=63.60  Aligned_cols=40  Identities=10%  Similarity=0.113  Sum_probs=29.5

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCG--ECGK-------SYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECT--TTCC-------EESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECC--CCCc-------ccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            577888888888888  8888       55544  46777776   77777776

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1e-08  Score=63.43  Aligned_cols=40  Identities=13%  Similarity=0.090  Sum_probs=23.8

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCS--ECGK-------AFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCS--SSCC-------BCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCC--ccCh-------hhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            466677777777777  6666       44443  35555555   55555554

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.61  E-value=7.9e-09  Score=63.99  Aligned_cols=40  Identities=10%  Similarity=0.078  Sum_probs=24.6

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCV--ECGK-------GFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCS--SSCC-------CBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccC--ccCc-------ccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467777777777777  6776       33333  35555555   56666655

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=6.9e-09  Score=64.13  Aligned_cols=19  Identities=11%  Similarity=0.169  Sum_probs=10.9

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      +|+++|++++||.|.  .|++
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k   20 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCK--ECGK   20 (46)
T ss_dssp             CCCCCSSCCCCCCBT--TTTB
T ss_pred             CCcccCCCCCCeECC--CCCC
Confidence            355566666666555  5555

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.60  E-value=6.9e-09  Score=64.18  Aligned_cols=40  Identities=10%  Similarity=0.099  Sum_probs=25.0

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCN--ECGK-------VFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECS--SSCC-------EESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCC--CCcc-------hhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467777777777777  6776       44443  35555555   56666655

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.59  E-value=8e-09  Score=63.83  Aligned_cols=40  Identities=13%  Similarity=0.136  Sum_probs=24.8

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCK--ECGK-------SFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECS--SSCC-------EESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECC--cccc-------ccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            467777777777777  6766       44443  35555555   56666655

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=9.1e-09  Score=63.72  Aligned_cols=40  Identities=10%  Similarity=0.066  Sum_probs=23.5

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECT--ECGK-------AFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECS--SSCC-------EESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECC--CCCc-------hhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466677777777776  6666       44443  35555555   55555554

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.1e-08  Score=69.47  Aligned_cols=44  Identities=18%  Similarity=0.228  Sum_probs=35.2

Q ss_pred             CCCCCCCCceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCC
Q 044109           79 TNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus        79 ~~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k  126 (236)
                      +..+|.+++||.|.+|++.|. ...|..|+ .|.+++||.|.  .|++
T Consensus         8 H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~--~C~~   51 (75)
T 2d9k_A            8 HEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCG--NCGR   51 (75)
T ss_dssp             CCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECS--SSCC
T ss_pred             hCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcc--cCCC
Confidence            344688888888888888884 78888888 78888888888  6776

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=7.9e-09  Score=63.99  Aligned_cols=40  Identities=8%  Similarity=0.035  Sum_probs=24.4

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCH--ECGR-------GFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECS--SSCC-------EESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECC--cCCC-------ccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466777777777777  6666       44443  35555555   55666555

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=8.1e-09  Score=63.88  Aligned_cols=40  Identities=10%  Similarity=0.082  Sum_probs=23.8

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCN--ECGK-------VFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECS--SSCC-------EESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECC--CCCc-------hhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            466777777777777  6666       44433  35555555   55555554

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=8e-09  Score=63.83  Aligned_cols=40  Identities=13%  Similarity=0.106  Sum_probs=22.3

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~--~C~k-------~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCN--ECGK-------VFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEET--TTTE-------ECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECC--CcCh-------hhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466666666666666  6666       34333  34455544   55555544

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=7.8e-09  Score=63.96  Aligned_cols=40  Identities=13%  Similarity=0.071  Sum_probs=22.9

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECS--VCGK-------AFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECS--SSCC-------EESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCC--CcCC-------ccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            466677777777766  6666       44433  34555554   55555554

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=9.4e-09  Score=63.57  Aligned_cols=40  Identities=10%  Similarity=0.022  Sum_probs=24.4

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCE--ECGK-------GFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECS--SSCC-------EESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCC--Cccc-------hhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466777777777777  6666       44443  35555555   56666555

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=8.3e-09  Score=63.74  Aligned_cols=40  Identities=15%  Similarity=0.165  Sum_probs=23.1

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCD--YCGK-------AFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECS--SSCC-------EESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECC--CCCh-------hhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            466677777777766  6666       44333  35555555   55555554

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=7.9e-09  Score=63.92  Aligned_cols=40  Identities=10%  Similarity=0.074  Sum_probs=22.3

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCH--ECGK-------VFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECT--TTCC-------EESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECC--CCCc-------hhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466666666666666  6666       44333  34455554   55555544

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=7.6e-09  Score=64.00  Aligned_cols=40  Identities=13%  Similarity=0.095  Sum_probs=26.9

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCN--ECGK-------VFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECS--SSCC-------EESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECC--cCCc-------hhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477778888877777  7777       44443  46666666   66776665

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.57  E-value=1.4e-08  Score=69.31  Aligned_cols=36  Identities=22%  Similarity=0.512  Sum_probs=34.8

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTL  117 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~  117 (236)
                      +|+++++|.|.+|++.|.....|..|+++|++++||
T Consensus        39 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           39 VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             HHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             HcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            688999999999999999999999999999999997

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.57  E-value=1e-08  Score=63.47  Aligned_cols=19  Identities=11%  Similarity=0.198  Sum_probs=10.8

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      +|+++|++++||.|.  .|++
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k   20 (46)
T 2emk_A            2 SSGSSGTGEKPYECK--ECGK   20 (46)
T ss_dssp             CCCCCCSSSCSCBCS--SSCC
T ss_pred             CCCCccCCCCceECC--CCCc
Confidence            355566666665555  5555

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.57  E-value=1.1e-08  Score=63.24  Aligned_cols=40  Identities=5%  Similarity=0.003  Sum_probs=22.3

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCS--QCAK-------TFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECS--SSSC-------EESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECC--CCCc-------hhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466666666666666  6666       44333  34555554   55555544

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=9.1e-09  Score=63.55  Aligned_cols=19  Identities=11%  Similarity=0.128  Sum_probs=11.3

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      +|+++|++++||.|.  .|++
T Consensus         2 ~H~~~H~~~~~~~C~--~C~k   20 (46)
T 2eov_A            2 SSGSSGTGEKPYKCS--DCGK   20 (46)
T ss_dssp             CCCCCCSSCCSCBCS--SSCC
T ss_pred             CCCCCCCCCCCccCC--ccCh
Confidence            456666666666666  5555

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=1.1e-08  Score=63.29  Aligned_cols=29  Identities=17%  Similarity=0.286  Sum_probs=14.4

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSH  175 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~  175 (236)
                      +||.|++|++.|.+...|..|+++|....
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK   39 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHTTCCC
T ss_pred             CCcCCCcCCchhCCHHHHHHHHHHcCCCC
Confidence            33444444445555555555555554333

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=9.3e-09  Score=63.51  Aligned_cols=40  Identities=10%  Similarity=0.017  Sum_probs=23.0

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCD--ECGK-------NFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECT--TTCC-------EESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECC--CcCc-------ccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            466667777776666  6666       44433  35555555   55555554

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=98.56  E-value=7.7e-09  Score=73.02  Aligned_cols=50  Identities=14%  Similarity=0.102  Sum_probs=45.0

Q ss_pred             CCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCcCCCChhhhHHHhhhcC
Q 044109          114 ERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       114 ekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      ||||.|.  .|++       .|...  +..|+++|   +||.|+.|++.|.....|..|+++|.
T Consensus         1 ek~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~   55 (88)
T 1llm_C            1 MKPFQCR--ICMR-------NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH   55 (88)
T ss_dssp             CCCEECT--TTCC-------EESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCCCcCC--CCCC-------ccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC
Confidence            6899999  9999       67665  58898888   89999999999999999999999886

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.56  E-value=9.6e-09  Score=63.60  Aligned_cols=40  Identities=8%  Similarity=-0.007  Sum_probs=23.7

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCS--QCEK-------SFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECS--SSSC-------EESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECC--CCCc-------ccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466777777777777  6666       44433  35555555   55555554

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.56  E-value=1.8e-08  Score=64.75  Aligned_cols=48  Identities=8%  Similarity=0.021  Sum_probs=36.3

Q ss_pred             cccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109           95 QRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus        95 ~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      +|.|.....|..|+++|++++||.|.  .                              ||+.|.+...|..|+++|...
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~--~------------------------------C~k~f~~~~~L~~H~~~H~~~   50 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCP--I------------------------------CYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECT--T------------------------------TCCEESSHHHHHHHHHHHTTT
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCC--C------------------------------CCcccCCHHHHHHHHHHhccC
Confidence            35677777888888888887777766  4                              555678888999999988644

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.56  E-value=2.4e-08  Score=55.25  Aligned_cols=30  Identities=23%  Similarity=0.668  Sum_probs=28.2

Q ss_pred             CceeecccccccccCchhhhhhhhccCCCC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      ++||.|.+|++.|.....|..|+++|+++|
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            579999999999999999999999999875

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=6.7e-09  Score=64.19  Aligned_cols=19  Identities=16%  Similarity=0.151  Sum_probs=12.4

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      +|+++|++++||.|.  .|++
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k   20 (46)
T 2emm_A            2 SSGSSGTGERPHKCN--ECGK   20 (46)
T ss_dssp             CCCSCSSCCCSEECS--SSCC
T ss_pred             CCcCCcCCCCCeeCC--CCCh
Confidence            466666666666666  6666

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=8.2e-09  Score=63.85  Aligned_cols=19  Identities=11%  Similarity=0.127  Sum_probs=11.1

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      +|+++|++++||.|.  .|++
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k   20 (46)
T 2ytj_A            2 SSGSSGTGEKPYICA--ECGK   20 (46)
T ss_dssp             CSSCTTSSCCSEECS--SSCC
T ss_pred             CcccCCCCCcCeECC--CCCh
Confidence            455666666666665  5555

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=9.8e-09  Score=63.48  Aligned_cols=19  Identities=11%  Similarity=0.099  Sum_probs=11.8

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      .|+++|++++||.|.  .|++
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k   20 (46)
T 2ep2_A            2 SSGSSGTGEKPYECS--ICGK   20 (46)
T ss_dssp             CSSSCSSCCCSEECS--SSCC
T ss_pred             CCCCCCCCCcCcCCC--CCCc
Confidence            456666666666666  5555

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.1e-08  Score=63.30  Aligned_cols=40  Identities=13%  Similarity=0.097  Sum_probs=24.5

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCE--ECGK-------RFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEET--TTTE-------EESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCC--CCCc-------ccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467777777777777  6666       44443  35555555   55666555

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=9.3e-09  Score=63.60  Aligned_cols=40  Identities=8%  Similarity=0.058  Sum_probs=24.3

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~h~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCE--KCGK-------GYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEET--TTTE-------EESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECC--CCCC-------ccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            466777777777777  6666       44443  35555555   55666555

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.1e-08  Score=63.41  Aligned_cols=19  Identities=11%  Similarity=0.115  Sum_probs=11.9

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      .|+++|++++||.|.  .|++
T Consensus         2 ~h~~~h~~~k~~~C~--~C~k   20 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCM--ECGK   20 (46)
T ss_dssp             CSCCCCSSCCSSSBT--TTTB
T ss_pred             CCCcCCCCCCCcCCC--CCCc
Confidence            356666666666666  5665

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.9e-08  Score=62.28  Aligned_cols=40  Identities=15%  Similarity=0.121  Sum_probs=23.0

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccc-cc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNH-YS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r-~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|++ +|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECI--ECGK-------AFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCS--SSCC-------CBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECC--ccCc-------hhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            466667777777666  6666       44433  355555 44   55555554

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=8e-09  Score=63.91  Aligned_cols=19  Identities=11%  Similarity=0.149  Sum_probs=12.2

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      +|+++|++++||.|.  .|++
T Consensus         2 ~H~~~H~~~~~~~C~--~C~k   20 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCN--ECGK   20 (46)
T ss_dssp             CCCCCSSSSCSEECS--SSCC
T ss_pred             CCcccCCCCCCEeCC--cCCC
Confidence            466666666666666  6665

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=7.5e-09  Score=64.12  Aligned_cols=40  Identities=15%  Similarity=0.173  Sum_probs=22.1

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCN--ECGK-------NFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECS--SSCC-------EESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEcc--ccCc-------ccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            466666666666666  6666       44333  34454444   45555544

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.54  E-value=1.6e-08  Score=60.33  Aligned_cols=31  Identities=26%  Similarity=0.313  Sum_probs=28.9

Q ss_pred             CCCCceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           83 PSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        83 htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      +.++|||.|.+|+|.|.+.+.|.+|+       ||.|.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~   33 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCS   33 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTST
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECc
Confidence            67899999999999999999999998       78886

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=7.9e-09  Score=63.93  Aligned_cols=40  Identities=15%  Similarity=0.128  Sum_probs=22.3

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICT--VCGK-------AFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECT--TTCC-------EESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCC--CCCc-------hhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            466666666666666  6666       44333  34455444   55555544

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.53  E-value=3.5e-08  Score=54.39  Aligned_cols=29  Identities=28%  Similarity=0.551  Sum_probs=27.4

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +||.|.+|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            68999999999999999999999999875

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=8.4e-09  Score=63.80  Aligned_cols=19  Identities=11%  Similarity=0.141  Sum_probs=11.8

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      .|+++|++++||.|.  .|++
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k   20 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCS--ECGK   20 (46)
T ss_dssp             CCCCCSCCCCSEECS--SSCC
T ss_pred             CCccccCCCcCeECC--CCCC
Confidence            456666666666666  5555

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=2.2e-08  Score=71.33  Aligned_cols=38  Identities=16%  Similarity=0.138  Sum_probs=35.7

Q ss_pred             CCCCce--------eecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           83 PSEQRV--------FSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        83 htgekp--------f~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      |+++++        |.|.+|++.|.....|..|+++|++++||.|.
T Consensus        49 H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           49 HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             TTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             ccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            777776        99999999999999999999999999999997

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=1.4e-08  Score=62.80  Aligned_cols=19  Identities=11%  Similarity=0.130  Sum_probs=11.4

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      +|+++|++++||.|.  .|++
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k   20 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCA--ECGK   20 (46)
T ss_dssp             CCCSSSSCCCSEECS--SSCC
T ss_pred             CCCCCCCCCCCeECC--CCCc
Confidence            456666666666666  5555

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=1.2e-08  Score=62.98  Aligned_cols=19  Identities=11%  Similarity=0.114  Sum_probs=11.5

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      .|+++|++++||.|.  .|++
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k   20 (46)
T 2epw_A            2 SSGSSGTGEKPCKCT--ECGK   20 (46)
T ss_dssp             CCCCCCCCCCSEECS--SSCC
T ss_pred             cCcccCCCCCCeeCC--CCCC
Confidence            356666666666666  5555

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=1e-08  Score=63.38  Aligned_cols=19  Identities=11%  Similarity=0.120  Sum_probs=11.4

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      +|+++|++++||.|.  .|++
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k   20 (46)
T 2emy_A            2 SSGSSGTGENPYECH--ECGK   20 (46)
T ss_dssp             CCCCCCCSSCCEECS--SSCC
T ss_pred             CCCCCCCCCcCcCCC--CCCc
Confidence            356666666666666  5555

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=1.1e-08  Score=63.25  Aligned_cols=40  Identities=10%  Similarity=0.002  Sum_probs=22.7

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCN--ECGK-------AFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECS--SSCC-------EESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECC--CCCc-------hhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466667777666666  6666       44433  34555554   55555554

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=7.8e-09  Score=63.95  Aligned_cols=40  Identities=13%  Similarity=0.099  Sum_probs=22.5

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~h~~~H~~~~~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCN--ECGK-------TFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEET--TTTE-------EESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECC--CCCc-------ccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            466677777777666  6666       44333  34455444   55555544

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=1.3e-08  Score=62.94  Aligned_cols=19  Identities=11%  Similarity=0.186  Sum_probs=11.7

Q ss_pred             hhhhccCCCCCCccCcCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k  126 (236)
                      .|+++|++++||.|.  .|++
T Consensus         2 ~h~~~H~~~k~~~C~--~C~k   20 (46)
T 2enc_A            2 SSGSSGSGEKPFKCE--ECGK   20 (46)
T ss_dssp             CCSSCCCCCCSEECS--SSCC
T ss_pred             CCCCCCCCCCCcCCC--CCCC
Confidence            356666666666666  5555

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=1.4e-08  Score=62.15  Aligned_cols=18  Identities=6%  Similarity=0.021  Sum_probs=10.6

Q ss_pred             hhhccCCCCCCccCcCCCCC
Q 044109          107 HQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       107 H~r~Htgekp~~C~~~~C~k  126 (236)
                      |+++|++++||.|.  .|++
T Consensus         1 H~~~H~~~k~~~C~--~C~k   18 (44)
T 2emx_A            1 GSSGSSGEKPFGCS--CCEK   18 (44)
T ss_dssp             CCCCCSSCCCEECS--SSSC
T ss_pred             CCCCcCCCcCccCC--CCCc
Confidence            45566666666665  5555

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=1.3e-08  Score=62.95  Aligned_cols=40  Identities=8%  Similarity=0.072  Sum_probs=23.0

Q ss_pred             hhhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          106 GHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       106 ~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      .|+++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCV--ECGK-------GYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECS--SSCC-------EESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECc--ccCc-------hhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            366667777777666  6666       44433  35555555   55555554

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.48  E-value=6.2e-08  Score=54.84  Aligned_cols=30  Identities=27%  Similarity=0.660  Sum_probs=28.1

Q ss_pred             Cceeecc--cccccccCchhhhhhhhccCCCC
Q 044109           86 QRVFSCN--YCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        86 ekpf~C~--~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      ++||.|.  .|++.|.....|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4799999  89999999999999999999875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=1.7e-07  Score=57.70  Aligned_cols=32  Identities=16%  Similarity=0.194  Sum_probs=20.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSG   42 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            55555566666777777777777775544443

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=1.3e-07  Score=58.20  Aligned_cols=32  Identities=16%  Similarity=0.128  Sum_probs=20.1

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSG   42 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHhhCCCCCCC
Confidence            45555566666777777777777775544443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.47  E-value=3.3e-08  Score=61.73  Aligned_cols=34  Identities=21%  Similarity=0.487  Sum_probs=31.8

Q ss_pred             CCCCCceeecc--cccccccCchhhhhhhhccCCCC
Q 044109           82 HPSEQRVFSCN--YCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        82 ~htgekpf~C~--~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +|++++||.|.  .|++.|.....|..|+++|+++|
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            68999999996  69999999999999999999985

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.47  E-value=3.7e-08  Score=63.30  Aligned_cols=43  Identities=7%  Similarity=0.054  Sum_probs=30.4

Q ss_pred             hccCCCCCCccCcCCCCCccCCCCcccCCc--cccccc-cc---CCCCCCCCCcCCCC
Q 044109          109 NAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNH-YS---SISSLPLHGAAYNR  160 (236)
Q Consensus       109 r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r-~h---kp~~C~~Cgk~F~~  160 (236)
                      ..|++++||.|.  .|++       .|...  |..|++ +|   +||.|++|++.|.+
T Consensus         5 ~~~~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQ--SCGK-------GFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECS--SSCC-------EESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCeECC--CCCc-------ccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            356777888888  7887       55554  467765 66   77888888887764

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=1.6e-07  Score=56.55  Aligned_cols=32  Identities=9%  Similarity=0.072  Sum_probs=23.6

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|.+|+++|.......
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   40 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPS   40 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            56666677777888888999988886554443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.86  E-value=1.8e-08  Score=55.95  Aligned_cols=30  Identities=33%  Similarity=0.616  Sum_probs=28.0

Q ss_pred             CceeecccccccccCchhhhhhhhccCCCC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      ++||.|.+|++.|.....|..|+++|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            479999999999999999999999999875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.47  E-value=4.7e-08  Score=53.75  Aligned_cols=29  Identities=34%  Similarity=0.722  Sum_probs=27.3

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +||.|.+|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999999875

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=1.5e-08  Score=62.59  Aligned_cols=18  Identities=22%  Similarity=0.327  Sum_probs=10.6

Q ss_pred             hhhccCCCCCCccCcCCCCC
Q 044109          107 HQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       107 H~r~Htgekp~~C~~~~C~k  126 (236)
                      |+++|++++||.|.  .|++
T Consensus         3 H~~~H~~~~~~~C~--~C~k   20 (46)
T 2yso_A            3 SGSSGSREKSHQCR--ECGE   20 (46)
T ss_dssp             CSCCSSCCCCEECT--TTCC
T ss_pred             cccccCCCCCEEcc--ccCh
Confidence            55566666666665  5555

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=1.7e-07  Score=56.97  Aligned_cols=30  Identities=13%  Similarity=0.097  Sum_probs=20.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHT  176 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~  176 (236)
                      +||.|++||+.|.+...|..|+++|.....
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTRTHTGESG   40 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHTTTCCSSS
T ss_pred             cCeECCCCCCccCCHHHHHHHhhhcCCCCC
Confidence            556666666677777788888877754443

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=1.3e-07  Score=56.88  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=19.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSH  175 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~  175 (236)
                      +||.|++||+.|.+...|..|+++|....
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   38 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSG   38 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGGGTSCCS
T ss_pred             CCeeCCCccchhCCHHHHHHHHHHhCCCC
Confidence            55555566667777777777777775443

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.84  E-value=2e-08  Score=55.54  Aligned_cols=29  Identities=24%  Similarity=0.528  Sum_probs=27.3

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +||.|.+|++.|.....|..|+++|+++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            58999999999999999999999999875

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.45  E-value=1.6e-07  Score=57.79  Aligned_cols=32  Identities=16%  Similarity=0.142  Sum_probs=19.9

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|....+..
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSG   42 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSS
T ss_pred             cCeECCCCCcccCChhHHHHHhHhcCCCCCCC
Confidence            45555566666777777777777775444433

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.44  E-value=4.3e-08  Score=53.80  Aligned_cols=29  Identities=28%  Similarity=0.550  Sum_probs=27.4

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +||.|.+|++.|.....|..|+++|+++|
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            58999999999999999999999999875

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=1.9e-07  Score=57.37  Aligned_cols=32  Identities=19%  Similarity=0.228  Sum_probs=20.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSG   42 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCS
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            55555566666777777777777775544433

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.44  E-value=6.7e-08  Score=53.34  Aligned_cols=30  Identities=20%  Similarity=0.537  Sum_probs=28.0

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRERT  116 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgekp  116 (236)
                      +||.|.+|++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            589999999999999999999999999874

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=2e-07  Score=57.36  Aligned_cols=32  Identities=19%  Similarity=0.229  Sum_probs=20.6

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSG   42 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSS
T ss_pred             CCeECCcCChhhCCHHHHHHHHHHhCCCCCCC
Confidence            55555566666777777777777775544443

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=2e-07  Score=57.41  Aligned_cols=32  Identities=16%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSG   42 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSC
T ss_pred             CCEECCccCcccCCHHHHHHHHHHhCCCCCCC
Confidence            55555566666777777777777775544443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.44  E-value=5.2e-08  Score=53.37  Aligned_cols=29  Identities=24%  Similarity=0.504  Sum_probs=27.3

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +||.|.+|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            58999999999999999999999999875

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=2.2e-07  Score=57.26  Aligned_cols=32  Identities=13%  Similarity=0.169  Sum_probs=19.9

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|....+..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSG   42 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSS
T ss_pred             cCCCCCCCCcccCCHHHHHHHHHhcCCCCCCC
Confidence            45555556666777777777777775444433

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.44  E-value=7.3e-08  Score=54.20  Aligned_cols=29  Identities=38%  Similarity=0.850  Sum_probs=27.2

Q ss_pred             ceeecc--cccccccCchhhhhhhhccCCCC
Q 044109           87 RVFSCN--YCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        87 kpf~C~--~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +||.|.  .|++.|.....|..|+++|+++|
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            589998  99999999999999999999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.43  E-value=2.1e-07  Score=57.39  Aligned_cols=32  Identities=9%  Similarity=0.027  Sum_probs=21.4

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSG   42 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCS
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHHhCCCCCCC
Confidence            55555566667777888888888875544433

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.43  E-value=2.1e-07  Score=57.39  Aligned_cols=32  Identities=19%  Similarity=0.288  Sum_probs=19.6

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|....+..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSG   42 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            45555556666777777777777775444433

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=2.2e-07  Score=57.35  Aligned_cols=30  Identities=17%  Similarity=0.201  Sum_probs=16.6

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHT  176 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~  176 (236)
                      +||.|++|++.|.+...|+.|+++|.....
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP   40 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTTTTTSCCS
T ss_pred             cccCCCCCCcccCcHHHHHHHHHhcCCCCC
Confidence            444444555556666666666666644433

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=2.9e-07  Score=56.71  Aligned_cols=32  Identities=13%  Similarity=0.170  Sum_probs=20.1

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSG   42 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCC
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHHhCCCCCCC
Confidence            55555566666777777777777775444433

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.41  E-value=1.6e-07  Score=56.56  Aligned_cols=31  Identities=19%  Similarity=0.172  Sum_probs=20.9

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      +||.|++|++.|.+...|..|+++|......
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQRTHAGESGP   39 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGCCCCSC
T ss_pred             CCccCCCcChhhCCHHHHHHHHHhcCCCCCC
Confidence            5555556666777778888888877654433

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=2.6e-08  Score=61.58  Aligned_cols=30  Identities=17%  Similarity=0.220  Sum_probs=16.2

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHT  176 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~  176 (236)
                      +||.|++|++.|.+...|..|+++|.....
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHCCCCS
T ss_pred             CCEECCcCCchhCCHHHHHHHHHHhCCCCC
Confidence            444444455556666666666666644433

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.7e-07  Score=57.15  Aligned_cols=31  Identities=6%  Similarity=-0.017  Sum_probs=20.8

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      +||.|++|++.|.+...|..|+++|......
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2yu5_A           11 NPFKCSKCDRVFTQRNYLVQHERTHARKSGP   41 (44)
T ss_dssp             CSEECSSSSCEESSSHHHHHHHHHCCCCCSS
T ss_pred             CCeECCCCCchhCCHHHHHHHhHhcCCCCCC
Confidence            4555556666777778888888887654433

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=2.3e-07  Score=55.93  Aligned_cols=29  Identities=17%  Similarity=0.210  Sum_probs=19.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSH  175 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~  175 (236)
                      +||.|++|++.|.+...|..|+++|....
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   38 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLRIHTGSG   38 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTTTTSCCS
T ss_pred             CCEECCCCCCccCCHHHHHHHHHhcCCCC
Confidence            45555566666777778888877775443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.40  E-value=2.2e-08  Score=69.40  Aligned_cols=52  Identities=17%  Similarity=0.302  Sum_probs=45.1

Q ss_pred             CCCCCceeeccc--ccccccCchhhhhhhhccCCCCCCccCcCC---CCCccCCCCcccCCc--ccccccc
Q 044109           82 HPSEQRVFSCNY--CQRKFYSSQALGGHQNAHKRERTLAKRGQR---IGTYTAASPFAFGQP--YLHQNHY  145 (236)
Q Consensus        82 ~htgekpf~C~~--C~k~F~~~~~L~~H~r~Htgekp~~C~~~~---C~k~~~~~~~~f~~~--~~~H~r~  145 (236)
                      +|+++++|.|.+  |++.|.....|..|+++|++   |.|.  .   |++       .|...  +..|+++
T Consensus        25 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~--~~~~C~~-------~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           25 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK--KDDSCSF-------VGKTWTLYLKHVAE   83 (85)
T ss_dssp             HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECC--SCSSCCC-------EESSHHHHHHHHHH
T ss_pred             HhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCC--CCCCCCC-------ccCCHHHHHHHHHh
Confidence            678899999998  99999999999999999998   9999  8   999       66654  4667654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.40  E-value=9.5e-08  Score=52.25  Aligned_cols=28  Identities=25%  Similarity=0.610  Sum_probs=26.2

Q ss_pred             CceeecccccccccCchhhhhhhhccCC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKR  113 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htg  113 (236)
                      ++||.|.+|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            5799999999999999999999999975

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.6e-07  Score=57.92  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=17.8

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      +||.|++|++.|.+...|..|+++|......
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQRIHTGEKPS   41 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTSCCCCC
T ss_pred             CCeECCcCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4444445555566666666666666544433

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=2e-07  Score=56.80  Aligned_cols=31  Identities=13%  Similarity=0.058  Sum_probs=20.9

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      +||.|++|++.|.+...|..|+++|......
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQKTHAAKSGP   41 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGGGGCCCCCT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcCCCCCc
Confidence            5566666666777777888888777554433

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.8e-07  Score=57.57  Aligned_cols=31  Identities=16%  Similarity=0.133  Sum_probs=18.4

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      +||.|++|++.|.+...|..|+++|....+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~   41 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPS   41 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGGTSSCCSS
T ss_pred             cCEECCCCChhhCChHHHHHHHHhcCCCCCc
Confidence            4455555556666667777777666544433

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.8e-07  Score=57.00  Aligned_cols=29  Identities=14%  Similarity=0.106  Sum_probs=19.1

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSH  175 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~  175 (236)
                      +||.|++|++.|.+...|..|+++|....
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQKTHSGQS   39 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHTTSSSSC
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHHcCCCC
Confidence            45555566666777777777777775443

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.9e-07  Score=56.81  Aligned_cols=36  Identities=14%  Similarity=0.087  Sum_probs=25.0

Q ss_pred             ccccc---CCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          142 QNHYS---SISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       142 H~r~h---kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      |+++|   +||.|++|++.|.+...|..|+++|......
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGP   41 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCS
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCC
Confidence            44444   5666667777788888888888888654433

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.7e-07  Score=57.32  Aligned_cols=36  Identities=14%  Similarity=0.016  Sum_probs=25.1

Q ss_pred             ccccc---CCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          142 QNHYS---SISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       142 H~r~h---kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      |+++|   +||.|++|++.|.+...|..|+++|.....+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGP   41 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCC
Confidence            44444   5666666777788888999999888655443

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.8e-07  Score=57.54  Aligned_cols=32  Identities=19%  Similarity=0.233  Sum_probs=20.3

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      ++|.|++|++.|.+...|..|+++|.......
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSG   42 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHGGGCSCCCCS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHhHhCCCCCCC
Confidence            45555566666777777777777775544433

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=2.6e-07  Score=56.91  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=21.4

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCS
T ss_pred             CCEECCccCcccCCHHHHHHHHHHcCCCCCCC
Confidence            55556666667777778888887775544443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.39  E-value=1.2e-07  Score=52.50  Aligned_cols=29  Identities=28%  Similarity=0.607  Sum_probs=27.1

Q ss_pred             ceeecccccccccCchhhhhh-hhccCCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGH-QNAHKRER  115 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H-~r~Htgek  115 (236)
                      +||.|..|++.|.....|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            589999999999999999999 89999875

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.6e-07  Score=57.80  Aligned_cols=33  Identities=12%  Similarity=0.137  Sum_probs=21.6

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTS  179 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~~  179 (236)
                      +||.|++|++.|.+...|..|+++|.......|
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP   43 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHCCCCCCCS
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            555555666667777778888877765544443

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=1.9e-07  Score=57.46  Aligned_cols=32  Identities=19%  Similarity=0.132  Sum_probs=20.6

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSG   42 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHTSCSSSSSC
T ss_pred             CCcCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            55555566666777777777777775544433

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=2.2e-07  Score=57.15  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=20.8

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSG   42 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHTTSCCCCCCC
T ss_pred             CCeECCCCChhhCCHHHHHHHHHHhCCCCCCC
Confidence            55555566666777777777777775544443

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.38  E-value=1.6e-07  Score=57.93  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=20.4

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQRIHTGEKPSG   42 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHTTSCSSS
T ss_pred             CCEECCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            45555566666777777777777775544443

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=5.8e-08  Score=59.89  Aligned_cols=39  Identities=8%  Similarity=-0.050  Sum_probs=21.9

Q ss_pred             hhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          107 HQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       107 H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      ++++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         3 ~~~~h~~~~~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCD--VCHK-------SFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECS--SSCC-------EESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCc--ccCc-------ccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45566666666666  6666       44433  35555555   55555554

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=1.9e-07  Score=57.46  Aligned_cols=32  Identities=16%  Similarity=0.187  Sum_probs=21.2

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSG   42 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHHHHCCCSCSC
T ss_pred             CCeeccccCChhcCHHHHHHHHHHcCCCCCCC
Confidence            55556666667777777888877776554443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.37  E-value=1.2e-07  Score=51.57  Aligned_cols=27  Identities=26%  Similarity=0.571  Sum_probs=25.4

Q ss_pred             CceeecccccccccCchhhhhhhhccC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Ht  112 (236)
                      ++||.|.+|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            579999999999999999999999985

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=2e-07  Score=57.32  Aligned_cols=31  Identities=19%  Similarity=0.215  Sum_probs=18.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      +||.|++|++.|.+...|..|+++|......
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPS   41 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTSSCCSS
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcCCCCCC
Confidence            4455555566666677777777766544433

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.36  E-value=1e-07  Score=52.00  Aligned_cols=27  Identities=19%  Similarity=0.439  Sum_probs=25.3

Q ss_pred             CceeecccccccccCchhhhhhhhccC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Ht  112 (236)
                      ++||.|.+|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            479999999999999999999999985

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=1.4e-07  Score=58.14  Aligned_cols=33  Identities=21%  Similarity=0.185  Sum_probs=21.2

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTS  179 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~~  179 (236)
                      +||.|++|++.|.+...|..|+++|.......|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP   43 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHHHHSSCCSSSC
T ss_pred             CCeECcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            455555666667777777788777755544433

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=2.2e-07  Score=57.27  Aligned_cols=32  Identities=13%  Similarity=0.069  Sum_probs=22.0

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC-CCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP-SHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP-~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.. .....
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~   43 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGP   43 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHTTCCSCCTTSS
T ss_pred             CCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCC
Confidence            555566666677888888888888865 54443

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=1.9e-07  Score=57.51  Aligned_cols=32  Identities=16%  Similarity=0.103  Sum_probs=20.4

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|+.|+++|.......
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSG   42 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHHHHSSSSCCC
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            45555566666777777777777775544433

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.35  E-value=2.5e-07  Score=55.59  Aligned_cols=30  Identities=13%  Similarity=0.083  Sum_probs=22.4

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHT  176 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~  176 (236)
                      +||.|++||+.|.+...|..|+++|.....
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~   39 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGP   39 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTTCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHhhhcCCCCC
Confidence            566666777778888889999888865443

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=1.9e-07  Score=57.60  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=21.3

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSG   42 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHTCCCBTT
T ss_pred             CCEECcccCCccCCHhHHHHHHHHcCCCCCCC
Confidence            55555566667777778888887776544443

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=9.3e-08  Score=59.01  Aligned_cols=38  Identities=11%  Similarity=0.045  Sum_probs=22.6

Q ss_pred             hhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCC
Q 044109          108 QNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLH  154 (236)
Q Consensus       108 ~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~C  154 (236)
                      +++|++++||.|.  .|++       .|...  |..|+++|   +||.|++|
T Consensus         4 ~~~h~~~k~~~C~--~C~k-------~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCS--ECGK-------SFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCS--SSCC-------CCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCC--CCCc-------ccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5566777777776  6666       44443  35555555   56666655

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.34  E-value=3e-07  Score=63.83  Aligned_cols=39  Identities=15%  Similarity=0.399  Sum_probs=37.4

Q ss_pred             CceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k  126 (236)
                      +++|.|.+|++.|.....|..|+++|++++++.|.  .|+.
T Consensus        45 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~--~~~~   83 (86)
T 1x6h_A           45 PAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGE--NSGP   83 (86)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCC--CCCC
T ss_pred             CcceECCCCCChhCCHHHHHHHHHHccCCCCcccC--CCCC
Confidence            38999999999999999999999999999999999  9987

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.34  E-value=3e-07  Score=53.68  Aligned_cols=26  Identities=19%  Similarity=0.192  Sum_probs=21.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      +||.|+.|++.|.+...|..|+++|.
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCccCCCCCcccCcHHHHHHHHHHhc
Confidence            56667777788999999999999885

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=9.3e-08  Score=59.33  Aligned_cols=20  Identities=15%  Similarity=0.054  Sum_probs=10.5

Q ss_pred             hhhccCCCCCCccCcCCCCC
Q 044109          107 HQNAHKRERTLAKRGQRIGT  126 (236)
Q Consensus       107 H~r~Htgekp~~C~~~~C~k  126 (236)
                      |.++|++++||.|.++.|++
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k   22 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGW   22 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCC
Confidence            45556666666654223444

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.33  E-value=1.8e-07  Score=50.53  Aligned_cols=27  Identities=37%  Similarity=0.822  Sum_probs=24.3

Q ss_pred             eeecccccccccCchhhhhhhhccCCC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~Htge  114 (236)
                      ||.|.+|++.|.....|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999875

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=2.4e-07  Score=57.06  Aligned_cols=27  Identities=15%  Similarity=0.134  Sum_probs=16.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|++|++.|.+...|..|+++|..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLRLHSR   37 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhCC
Confidence            455555556666667777777776643

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=5.3e-07  Score=54.95  Aligned_cols=31  Identities=16%  Similarity=0.165  Sum_probs=21.3

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      +||.|++|++.|.+...|..|+++|......
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQALHAGESGP   41 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHHHHTTSCCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHHCCCCCC
Confidence            5555666667778888888888888554433

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=1.9e-07  Score=56.22  Aligned_cols=28  Identities=21%  Similarity=0.278  Sum_probs=19.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      +||.|++|++.|.+...|..|+++|...
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~   37 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVLIHTGS   37 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTHHHHSC
T ss_pred             CCEeCCCcChhhCCHHHHHHHHHHcCCC
Confidence            5555666666777888888888877443

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.30  E-value=2.2e-07  Score=57.08  Aligned_cols=30  Identities=20%  Similarity=0.189  Sum_probs=17.9

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHT  176 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~  176 (236)
                      +||.|++|++.|.+...|..|+++|....+
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   40 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP   40 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHHHHSCCC
T ss_pred             cCccCCCCCCCcCCHHHHHHHHHhcCCCCC
Confidence            445555556666666777777777644433

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=2.5e-07  Score=56.38  Aligned_cols=30  Identities=20%  Similarity=0.247  Sum_probs=19.1

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHT  176 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~  176 (236)
                      +||.|++|++.|.+...|..|+++|.....
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQKIHTRKSG   40 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHHHHCCCCC
T ss_pred             CCeECcccCcccCCHHHHHHHHHHhCCCCC
Confidence            455555566667777777777777754443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.27  E-value=2e-07  Score=62.68  Aligned_cols=37  Identities=22%  Similarity=0.384  Sum_probs=34.8

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCCCCc
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLA  118 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~  118 (236)
                      +|+++++|.|.+|++.|.....|..|+++|++++|..
T Consensus        31 ~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A           31 IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             GGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             HcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            6899999999999999999999999999999998854

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=8.9e-08  Score=59.02  Aligned_cols=26  Identities=15%  Similarity=0.078  Sum_probs=14.8

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      +||.|++|++.|.+...|..|+++|.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHLRSHE   36 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHHHHH
T ss_pred             CCeeCcccChhhCCHHHHHHHHHHhC
Confidence            44444455555666666666666663

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.26  E-value=3.6e-07  Score=58.61  Aligned_cols=34  Identities=21%  Similarity=0.546  Sum_probs=32.4

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +|++++||.|.+|++.|.....|..|+++|++++
T Consensus        23 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A           23 THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             HTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             hcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            6889999999999999999999999999999886

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.24  E-value=7.2e-07  Score=54.59  Aligned_cols=36  Identities=19%  Similarity=0.226  Sum_probs=20.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGN  182 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~~~~~  182 (236)
                      +||.|++|++.|.+...|..|+++|.......+..|
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~c   44 (45)
T 2epq_A            9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS   44 (45)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence            455555556666666666666666655554444443

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.20  E-value=1.1e-06  Score=62.49  Aligned_cols=49  Identities=6%  Similarity=-0.009  Sum_probs=42.6

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNNWSRPP  195 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~~~~~g~~~~~~~~~r~~  195 (236)
                      ++|.|++||+.|.+...|.+|+++|....++.|..||+.|.....+..+
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H   75 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH   75 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHH
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHh
Confidence            7899999999999999999999999888889999999999865444443

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.51  E-value=1.8e-07  Score=50.27  Aligned_cols=26  Identities=27%  Similarity=0.703  Sum_probs=24.4

Q ss_pred             ceeecccccccccCchhhhhhhhccC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Ht  112 (236)
                      |||.|.+|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            68999999999999999999999884

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.19  E-value=3.4e-07  Score=57.04  Aligned_cols=35  Identities=11%  Similarity=0.180  Sum_probs=15.4

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHG  181 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~~~~  181 (236)
                      ++|.|++|++.|.+...|..|+++|.....+.|..
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (48)
T 2epr_A           11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGP   45 (48)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCC
Confidence            34444444444444444444444444333333333

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.19  E-value=1.2e-06  Score=50.11  Aligned_cols=29  Identities=17%  Similarity=0.085  Sum_probs=26.2

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSH  175 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~  175 (236)
                      +||.|++||+.|.+...|..|+++|....
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~   29 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLG   29 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            68999999999999999999999996544

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.19  E-value=7.4e-07  Score=54.54  Aligned_cols=32  Identities=13%  Similarity=0.165  Sum_probs=21.0

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTST  178 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~  178 (236)
                      +||.|++|++.|.+...|..|+++|.......
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGP   42 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHTTTSSCCCCC
T ss_pred             cCccCCCCCCccCChHHHHHHHHHhCCCCCCC
Confidence            55666666667777777777777775544443

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=1.4e-06  Score=53.55  Aligned_cols=33  Identities=15%  Similarity=0.083  Sum_probs=23.8

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTS  179 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~~  179 (236)
                      +||.|++|++.|.+...|..|+++|.......|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP   43 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSC
T ss_pred             CCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCC
Confidence            666777777778888888888888865544443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.15  E-value=7.6e-07  Score=60.92  Aligned_cols=44  Identities=9%  Similarity=0.091  Sum_probs=33.3

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhh-hcCCC-CCCCCCCCCCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSM-IHKPS-HTSTSHGNGNIYGHNN  190 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~-~HkP~-~~~~~~~~g~~~~~~~  190 (236)
                      +||.|++|++.|.+...|..|++ +|... ....|..||+.|....
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~   59 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS   59 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHH
T ss_pred             CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHH
Confidence            55555567777999999999997 67654 6778888998887533

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.13  E-value=1e-06  Score=51.31  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=23.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      +||.|++|++.|.+...|..|+++|...
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   35 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIKTNHPE   35 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHHHCSS
T ss_pred             CCcCCCCCCCccCCHHHHHHHHHHHcCC
Confidence            6777778888899999999999998643

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.38  E-value=3.9e-07  Score=48.92  Aligned_cols=25  Identities=16%  Similarity=0.068  Sum_probs=23.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhc
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      +||.|++||+.|.+...|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            5899999999999999999999987

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.10  E-value=6.6e-07  Score=48.64  Aligned_cols=25  Identities=24%  Similarity=0.166  Sum_probs=23.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhc
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      +||.|+.||+.|.+...|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            6899999999999999999999988

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.10  E-value=1.6e-06  Score=56.19  Aligned_cols=44  Identities=9%  Similarity=0.045  Sum_probs=39.1

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCCCCCCCCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGHNN  190 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~~~~~g~~~~~~~  190 (236)
                      +||.|++|++.|.....|..|+++|.......|..||+.|....
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   44 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRD   44 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHH
Confidence            58999999999999999999999998888888888998887543

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.09  E-value=9.7e-07  Score=47.72  Aligned_cols=25  Identities=16%  Similarity=-0.021  Sum_probs=23.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhc
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      +||.|+.||+.|.+...|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            6899999999999999999999988

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.07  E-value=2.3e-06  Score=46.59  Aligned_cols=27  Identities=15%  Similarity=0.089  Sum_probs=24.9

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|++|++.|.+...|..|+++|..
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcC
Confidence            589999999999999999999999864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.07  E-value=2.3e-06  Score=51.10  Aligned_cols=29  Identities=17%  Similarity=0.279  Sum_probs=22.9

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSH  175 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~  175 (236)
                      +||.|++|++.|.+...|..|+++|....
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   37 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHERIHTGSG   37 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGGGCCCCS
T ss_pred             CCeECCCCCCCcCCHHHHHHHHHHhCCCC
Confidence            67777778888888888999988886544

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.06  E-value=1.3e-06  Score=47.63  Aligned_cols=27  Identities=30%  Similarity=0.684  Sum_probs=25.3

Q ss_pred             ceeecc--cccccccCchhhhhhhhccCC
Q 044109           87 RVFSCN--YCQRKFYSSQALGGHQNAHKR  113 (236)
Q Consensus        87 kpf~C~--~C~k~F~~~~~L~~H~r~Htg  113 (236)
                      +||.|.  .|++.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            589999  999999999999999999975

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.05  E-value=1.3e-06  Score=58.95  Aligned_cols=42  Identities=17%  Similarity=0.188  Sum_probs=36.1

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCCCCCCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGH  188 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~~~~~g~~~~~  188 (236)
                      +||.|++|++.|.....|+.|+++|.......|..|++.|..
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~   54 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ   54 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCC
Confidence            777788888889999999999999987777888889988764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.04  E-value=1.7e-07  Score=66.97  Aligned_cols=54  Identities=4%  Similarity=-0.047  Sum_probs=40.3

Q ss_pred             hhhccCCCCCCccCcCCCCCccCCCCcccCCc--cccccccc---CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          107 HQNAHKRERTLAKRGQRIGTYTAASPFAFGQP--YLHQNHYS---SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       107 H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~--~~~H~r~h---kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      |.++|++++||.|.  .|++       .|...  |..|+++|   +||.|..|.    +...|..|+++|..
T Consensus        16 ~~~~H~~~kpy~C~--~C~k-------~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           16 GNGPRLQNSTYQCK--HCDS-------KLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCSCCCCSCEECS--SSCC-------EESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cccccCCCCCCcCC--CCCC-------EeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            35678999999999  9998       66665  47888888   889887665    45566777777743

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=4e-06  Score=50.76  Aligned_cols=31  Identities=3%  Similarity=0.085  Sum_probs=22.8

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      +||.|+.|++.|.+...|..|+++|......
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   39 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTLQTHSDKSG   39 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHHHHTCTTCS
T ss_pred             CCEECCCCCCeeCChHHHHHHHHhhCCCCCc
Confidence            6677777777788888888888888655443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.03  E-value=1.7e-06  Score=47.29  Aligned_cols=27  Identities=19%  Similarity=0.234  Sum_probs=24.9

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|+.||+.|.....|..|+++|..
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcC
Confidence            589999999999999999999999854

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.02  E-value=2.4e-06  Score=46.37  Aligned_cols=27  Identities=19%  Similarity=0.249  Sum_probs=24.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|+.||+.|.+...|..|+++|..
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            689999999999999999999999853

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.01  E-value=3.9e-06  Score=45.87  Aligned_cols=28  Identities=7%  Similarity=-0.030  Sum_probs=25.3

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      +||.|+.||+.|.....|..|+++|...
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccC
Confidence            5899999999999999999999998643

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.00  E-value=4.4e-06  Score=46.56  Aligned_cols=27  Identities=22%  Similarity=0.192  Sum_probs=24.8

Q ss_pred             CCCCCC--CCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLP--LHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~--~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|+  .||+.|.+...|..|+++|..
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            589998  999999999999999999964

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.99  E-value=1.9e-06  Score=46.80  Aligned_cols=26  Identities=15%  Similarity=0.249  Sum_probs=24.1

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      +||.|++|++.|.+...|..|+++|.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            68999999999999999999999884

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=97.99  E-value=1.9e-06  Score=55.17  Aligned_cols=42  Identities=10%  Similarity=0.048  Sum_probs=35.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCCCCCCCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTSTSHGNGNIYGH  188 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~~~~~~g~~~~~  188 (236)
                      +||.|++|++.|.....|..|+++|.......|..||+.|..
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   44 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQ   44 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence            689999999999999999999999977777888889887764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.98  E-value=3.7e-06  Score=45.07  Aligned_cols=25  Identities=16%  Similarity=0.214  Sum_probs=22.9

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhhcC
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      ||.|++||+.|.+...|..|+++|.
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            6899999999999999999999985

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.97  E-value=7.9e-07  Score=50.48  Aligned_cols=28  Identities=14%  Similarity=-0.013  Sum_probs=25.2

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      +||.|++||+.|.+...|..|+++|...
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~   28 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIV   28 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccC
Confidence            5899999999999999999999999644

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.96  E-value=3.2e-06  Score=48.30  Aligned_cols=28  Identities=14%  Similarity=-0.009  Sum_probs=24.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      +||.|++|++.|.+...|..|+++|...
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            6788888999999999999999999643

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.96  E-value=3.5e-06  Score=46.07  Aligned_cols=27  Identities=11%  Similarity=0.094  Sum_probs=24.9

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|+.||+.|.....|..|+++|..
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            689999999999999999999999864

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=2.6e-06  Score=51.17  Aligned_cols=27  Identities=15%  Similarity=0.187  Sum_probs=23.6

Q ss_pred             CCCCCCC--CCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPL--HGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~--Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|+.  |++.|.++..|++|+++|..
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            6788875  99999999999999999964

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.93  E-value=7.8e-06  Score=55.87  Aligned_cols=34  Identities=18%  Similarity=0.083  Sum_probs=27.9

Q ss_pred             CCCCCCC--CCcCCCChhhhHHHh-hhcCCCCCCCCC
Q 044109          147 SISSLPL--HGAAYNRSLGIQVHS-MIHKPSHTSTSH  180 (236)
Q Consensus       147 kp~~C~~--Cgk~F~~~~~L~~H~-~~HkP~~~~~~~  180 (236)
                      |||.|+.  |+|+|.+..+|++|+ ++|....+..+.
T Consensus        26 KPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           26 RPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             CSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             CCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            7888864  999999999999997 689777666654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=97.93  E-value=5.1e-06  Score=49.00  Aligned_cols=30  Identities=7%  Similarity=0.160  Sum_probs=25.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHT  176 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~  176 (236)
                      +||.|++||+.|.+...|..|+++|.....
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   34 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNVHRRDRA   34 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CceECCCCCcccCCHHHHHHHHHHcCCCcc
Confidence            688899999999999999999999965443

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=97.93  E-value=4.1e-06  Score=47.98  Aligned_cols=28  Identities=11%  Similarity=0.068  Sum_probs=24.1

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      +||.|++|++.|.+...|..|+++|...
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            6788888888999999999999999643

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=2.4e-06  Score=50.00  Aligned_cols=27  Identities=7%  Similarity=-0.107  Sum_probs=22.2

Q ss_pred             CCCCCCCCCcCCCChhhhHHH-hhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVH-SMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H-~~~HkP  173 (236)
                      +||.|+.|++.|.+...|..| +++|..
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            667777788889999999999 888853

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.92  E-value=7e-06  Score=45.02  Aligned_cols=27  Identities=22%  Similarity=0.177  Sum_probs=24.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHH-hhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVH-SMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H-~~~HkP  173 (236)
                      +||.|+.||+.|.+...|..| +++|..
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccC
Confidence            589999999999999999999 788864

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=5.8e-06  Score=47.56  Aligned_cols=27  Identities=11%  Similarity=0.298  Sum_probs=24.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      ++|.|++|++.|.+...|..|+++|..
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            788899999999999999999999854

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=4.9e-06  Score=48.06  Aligned_cols=27  Identities=15%  Similarity=0.040  Sum_probs=24.0

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|++|++.|.+...|..|+++|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            788888899999999999999999854

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.91  E-value=4.7e-06  Score=55.34  Aligned_cols=34  Identities=15%  Similarity=0.243  Sum_probs=31.4

Q ss_pred             CCCceeecc-cccccccCchhhhhhhhccCCCCCC
Q 044109           84 SEQRVFSCN-YCQRKFYSSQALGGHQNAHKRERTL  117 (236)
Q Consensus        84 tgekpf~C~-~C~k~F~~~~~L~~H~r~Htgekp~  117 (236)
                      ++++||.|. +|++.|.....|..|+++|...+|+
T Consensus        32 ~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~i   66 (66)
T 2eod_A           32 CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALV   66 (66)
T ss_dssp             CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCCC
T ss_pred             cCCcCccCCcccCcccccHHHHHHHHHhhcccCcC
Confidence            788999999 9999999999999999999887763

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.14  E-value=1.5e-06  Score=47.65  Aligned_cols=27  Identities=15%  Similarity=0.224  Sum_probs=24.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|+.||+.|.+...|..|+++|..
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            589999999999999999999999853

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.90  E-value=3e-05  Score=52.28  Aligned_cols=28  Identities=18%  Similarity=0.264  Sum_probs=25.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      |||.|.+|+|.|.+...|++|+++|...
T Consensus        12 kpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A           12 GILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             cCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            8899999999999999999999999654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.89  E-value=4.3e-06  Score=48.28  Aligned_cols=27  Identities=11%  Similarity=0.225  Sum_probs=23.9

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|++|++.|.+...|..|+++|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            788888899999999999999999853

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.89  E-value=3.2e-06  Score=45.92  Aligned_cols=27  Identities=19%  Similarity=0.149  Sum_probs=24.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|++|++.|.....|..|+++|..
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcC
Confidence            589999999999999999999999853

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.88  E-value=9.7e-06  Score=45.35  Aligned_cols=27  Identities=19%  Similarity=0.091  Sum_probs=24.9

Q ss_pred             CCCCCC--CCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLP--LHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~--~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|+  .||+.|.+...|..|+++|..
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            689999  899999999999999999964

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=3.5e-06  Score=49.01  Aligned_cols=26  Identities=15%  Similarity=0.203  Sum_probs=22.8

Q ss_pred             CCCCCCCCCcCCCCh-hhhHHHhhhcC
Q 044109          147 SISSLPLHGAAYNRS-LGIQVHSMIHK  172 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~-~~L~~H~~~Hk  172 (236)
                      +||.|++|++.|.+. ..|..|+++|.
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHHhcC
Confidence            678888888889998 99999999984

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=4.4e-06  Score=48.26  Aligned_cols=27  Identities=19%  Similarity=0.223  Sum_probs=24.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|+.|++.|.+...|..|+++|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            789999999999999999999999864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=4.8e-06  Score=47.94  Aligned_cols=27  Identities=19%  Similarity=0.073  Sum_probs=23.9

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|++|++.|.+...|..|+++|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            788888899999999999999999864

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.85  E-value=3.9e-06  Score=55.38  Aligned_cols=42  Identities=7%  Similarity=-0.017  Sum_probs=35.4

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhh-c-CCCCCCCCCCCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMI-H-KPSHTSTSHGNGNIYGH  188 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~-H-kP~~~~~~~~~g~~~~~  188 (236)
                      +||.|+.|++.|.....|..|+++ | .......|..||+.|..
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~   52 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTR   52 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESC
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCC
Confidence            678888888899999999999998 7 46677788889988764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.02  E-value=2.6e-06  Score=46.78  Aligned_cols=27  Identities=15%  Similarity=0.025  Sum_probs=24.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|+.||+.|.+...|..|+++|..
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            589999999999999999999999853

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=97.81  E-value=3.8e-06  Score=56.57  Aligned_cols=31  Identities=32%  Similarity=0.596  Sum_probs=29.4

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Ht  112 (236)
                      +|+++++|.|.+|++.|.....|..|+++|+
T Consensus        43 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           43 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             HHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             hhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            6889999999999999999999999999985

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.76  E-value=7.7e-06  Score=50.96  Aligned_cols=28  Identities=18%  Similarity=0.269  Sum_probs=23.5

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhh-hcCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSM-IHKPS  174 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~-~HkP~  174 (236)
                      +||.|.+||+.|.+...|..|++ +|...
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             cCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            67778888888999999999999 99644

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.68  E-value=1e-05  Score=43.91  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=24.1

Q ss_pred             CCCCCC--CCCcCCCChhhhHHHhhhcC
Q 044109          147 SISSLP--LHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       147 kp~~C~--~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      +||.|+  .||+.|.....|..|+++|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            578999  99999999999999999984

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.68  E-value=1.2e-05  Score=47.61  Aligned_cols=22  Identities=14%  Similarity=0.140  Sum_probs=19.2

Q ss_pred             CCCCCCCCCcCCCChhhhHHHh
Q 044109          147 SISSLPLHGAAYNRSLGIQVHS  168 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~  168 (236)
                      |||.|+.|||+|.++++|++|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            7888888888899999999997

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.68  E-value=1.4e-05  Score=49.47  Aligned_cols=27  Identities=15%  Similarity=0.098  Sum_probs=21.0

Q ss_pred             CCCCCC--CCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLP--LHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~--~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|+  .||+.|.+...|+.|+++|..
T Consensus        17 k~~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A           17 KTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             TEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             CCeECCCCCCCCccCCHHHHHHHHHHccC
Confidence            555563  578888899999999999854

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.61  E-value=2.9e-05  Score=52.87  Aligned_cols=39  Identities=18%  Similarity=0.506  Sum_probs=34.0

Q ss_pred             CCCC---CceeecccccccccCchhhhhhh-hccCCCCCCccC
Q 044109           82 HPSE---QRVFSCNYCQRKFYSSQALGGHQ-NAHKRERTLAKR  120 (236)
Q Consensus        82 ~htg---ekpf~C~~C~k~F~~~~~L~~H~-r~Htgekp~~C~  120 (236)
                      +|++   +++|.|.+|++.|.....|..|+ +.|.++++....
T Consensus        29 ~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~   71 (78)
T 2d9h_A           29 KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQE   71 (78)
T ss_dssp             HHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred             HhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCccc
Confidence            4664   89999999999999999999999 679998887655

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.54  E-value=2.4e-05  Score=45.56  Aligned_cols=28  Identities=14%  Similarity=0.085  Sum_probs=24.0

Q ss_pred             CCCCCC--CCCcCCCChhhhHHHhhhcCCC
Q 044109          147 SISSLP--LHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       147 kp~~C~--~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      +||.|+  .|++.|.+...|++|+++|...
T Consensus         5 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   34 (38)
T 1bhi_A            5 KPFLCTAPGCGQRFTNEDHLAVHKHKHEMT   34 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHHHHTT
T ss_pred             cceECCCCCCCcccCCHHHHHHHHHHhCCC
Confidence            678888  5999999999999999999543

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.51  E-value=2.6e-05  Score=45.41  Aligned_cols=27  Identities=15%  Similarity=0.155  Sum_probs=23.4

Q ss_pred             CCCCCC--CCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLP--LHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~--~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|.  .||+.|.+...|..|+++|..
T Consensus         7 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            7 KQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            678887  499999999999999999853

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=97.45  E-value=3.2e-05  Score=51.81  Aligned_cols=30  Identities=33%  Similarity=0.819  Sum_probs=28.0

Q ss_pred             CCCCCceeeccc--ccccccCchhhhhhhhcc
Q 044109           82 HPSEQRVFSCNY--CQRKFYSSQALGGHQNAH  111 (236)
Q Consensus        82 ~htgekpf~C~~--C~k~F~~~~~L~~H~r~H  111 (236)
                      +|++++||.|.+  |++.|.....|..|+++|
T Consensus        41 ~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           41 THTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             HHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             hcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            689999999976  999999999999999887

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.92  E-value=0.00024  Score=53.70  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=29.0

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhcc
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAH  111 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~H  111 (236)
                      ...|+|++||.|..|+|.|.+...|..|+++.
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            34799999999999999999999999998763

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.70  E-value=0.0002  Score=49.05  Aligned_cols=64  Identities=9%  Similarity=0.002  Sum_probs=53.3

Q ss_pred             chhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCc-cccccccc---CCCCCCCCCcCCCChhhhHHHhhhcCCCC
Q 044109          101 SQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQP-YLHQNHYS---SISSLPLHGAAYNRSLGIQVHSMIHKPSH  175 (236)
Q Consensus       101 ~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~-~~~H~r~h---kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~  175 (236)
                      ...|..|+++|.++||+.|.  .|++       .|... +..|+ .+   +||.|+.|++.|. ...|..|+++|....
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~--~C~~-------~~~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQ--HCDL-------ELSILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECS--SSCC-------EECHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             chHHHhhCcccCCCcccCCc--ccCh-------HhhHHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            45789999999999999999  9999       55433 47787 66   9999999999877 489999999985443

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.00097  Score=44.38  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=31.3

Q ss_pred             eecc--cccccccCchhhhhhh-hccCCCC------CCccCcCCCCC
Q 044109           89 FSCN--YCQRKFYSSQALGGHQ-NAHKRER------TLAKRGQRIGT  126 (236)
Q Consensus        89 f~C~--~C~k~F~~~~~L~~H~-r~Htgek------p~~C~~~~C~k  126 (236)
                      |.|.  .|++.|.+...|..|+ +.|.+.+      +|.|.|..|++
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~   48 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDF   48 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcC
Confidence            4565  4999999999999998 5798766      78888888876

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.90  E-value=0.0021  Score=48.75  Aligned_cols=78  Identities=13%  Similarity=0.196  Sum_probs=50.0

Q ss_pred             ceeecccccccccCchhhhhhh--hccCCC-CCCccCcCCCCCccCCCCcccCCccccccccc---CCCCCCCCCcCCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQ--NAHKRE-RTLAKRGQRIGTYTAASPFAFGQPYLHQNHYS---SISSLPLHGAAYNR  160 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~--r~Htge-kp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~h---kp~~C~~Cgk~F~~  160 (236)
                      +++.|.+|...|.+.+.+..|.  +.|... +.|.+.  .+.. .....-.+..  ..+...+   +.|-|.+|.+.|+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~--~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~C~~C~~~f~s  105 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI--NQGE-DSVPAKKFKA--APAEISDGEDRSKCCPVCNMTFSS  105 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHH--TTCC-CCCSCCCCSC--CSSCCSSCCCTTTEETTTTEECSS
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcc--cCcc-cCCCCCccCC--CccccccCCCCCeEcCCCCCEeCC
Confidence            5789999999999999999998  567643 445442  1100 0000001111  1111122   67889999999999


Q ss_pred             hhhhHHHhh
Q 044109          161 SLGIQVHSM  169 (236)
Q Consensus       161 ~~~L~~H~~  169 (236)
                      ...|..|..
T Consensus       106 ~~~~~~H~~  114 (127)
T 1zu1_A          106 PVVAESHYI  114 (127)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHC
Confidence            999999963

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.64  E-value=0.021  Score=35.39  Aligned_cols=31  Identities=13%  Similarity=0.117  Sum_probs=25.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHTS  177 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~~  177 (236)
                      -+|.||.|+..|.....|+.|++---|....
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~v~   41 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEMVE   41 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTTCC
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcchhh
Confidence            5688999999999999999999865555443

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=93.80  E-value=0.018  Score=43.41  Aligned_cols=25  Identities=8%  Similarity=0.030  Sum_probs=21.1

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhc
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      +||.|..|++.|.+...|..|+++.
T Consensus        49 kpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           49 GLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cceEcccCcchhCCHHHHHHHHhhh
Confidence            7788888888899999999997653

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.69  E-value=0.039  Score=34.17  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=21.9

Q ss_pred             ceeecccccccccCchhhhhhhh
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQN  109 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r  109 (236)
                      .+|.|+.|++.|.....|++||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            67899999999999999999997

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=92.31  E-value=0.043  Score=36.17  Aligned_cols=48  Identities=6%  Similarity=-0.152  Sum_probs=35.4

Q ss_pred             CccCcCCCCCccCCCCcccCCc--ccccc-ccc---C------CCCCC--CCCcCCCChhhhHHHhhhc
Q 044109          117 LAKRGQRIGTYTAASPFAFGQP--YLHQN-HYS---S------ISSLP--LHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       117 ~~C~~~~C~k~~~~~~~~f~~~--~~~H~-r~h---k------p~~C~--~Cgk~F~~~~~L~~H~~~H  171 (236)
                      |.|.|..|++       .|...  |..|+ +.|   +      +|.|.  .|++.+.....|..|+++.
T Consensus         2 l~C~W~~C~~-------~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            2 LKCKWKECPE-------SASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCTTCCC-------CCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CeEeeCCCCC-------cCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            6788889998       66665  45564 334   2      78896  8998888888899998763

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=82.90  E-value=0.46  Score=33.32  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=26.4

Q ss_pred             CceeecccccccccCchhhhhhhhccCCCCCCccC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      +.-..|-+||+.|..   |++|.++|.|..|..++
T Consensus        19 ~d~iiClecGK~fK~---LkRHL~~~hgltpeeYR   50 (87)
T 2jsp_A           19 DDHIVCLECGGSFKS---LKRHLTTHHSMTPEEYR   50 (87)
T ss_dssp             SSCEECTBTCCEESB---HHHHHHHTTCSCHHHHH
T ss_pred             CCceEecccchhhHH---HHHHHHHccCCCHHHHH
Confidence            455689999999985   88999998898876654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=81.11  E-value=0.51  Score=27.09  Aligned_cols=24  Identities=13%  Similarity=-0.014  Sum_probs=20.4

Q ss_pred             CCCCCCCCcCCCChhhhHHHh-hhc
Q 044109          148 ISSLPLHGAAYNRSLGIQVHS-MIH  171 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~-~~H  171 (236)
                      .|.||+|.+.|.....|..|- ..|
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcc
Confidence            378999999999999999995 444

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=80.15  E-value=0.86  Score=26.13  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.2

Q ss_pred             eeecccccccccCchhhhhhh-hccCC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQ-NAHKR  113 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~-r~Htg  113 (236)
                      .|.|+.|-+.|.+...|..|. ..|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            599999999999999999995 44653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	5e-13

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.3 bits (144), Expect = 5e-13
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 85  EQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAK 119
             R ++C++C+R+F S+QALGGH N H+R+R   +
Sbjct: 2   PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.59
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.37
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.3
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.22
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.22
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.19
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.16
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.11
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.1
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.07
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.04
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.0
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.96
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.94
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.93
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.92
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.91
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.85
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.83
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.81
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.81
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.73
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.7
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.67
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.61
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.6
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.58
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.56
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.55
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.55
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.53
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.47
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.43
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.4
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.39
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.36
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.35
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.34
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.31
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.28
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.22
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.15
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.94
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.94
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	97.84
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.68
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.66
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.65
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.61
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.56
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.56
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.54
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.3
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.3
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.19
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.18
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.17
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.13
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.95
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.95
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.94
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.91
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.65
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.65
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.54
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.52
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.45
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.41
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.38
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.35
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.35
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.77
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.68
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.54
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.48
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.31
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.05
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.87
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.55
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.51
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.4
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.35
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.33
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.29
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.95
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	93.91
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.69
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.05
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	92.83
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	92.72
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.71
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.01
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.57
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	88.92
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	88.71
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.17
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.48
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	86.69
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	85.52
d1y0jb1	36	U-shaped transcription factor, different fingers {	85.16
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	84.87
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	84.7
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	82.97
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	81.07
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	80.27

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2e-16  Score=102.08  Aligned_cols=53  Identities=19%  Similarity=0.382  Sum_probs=46.1

Q ss_pred             CceeecccccccccCchhhhhhhhccCCCCCCccCcCCCCCccCCCCcccCCcccccccccCCCCCCCCCcCCCChhhhH
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRIGTYTAASPFAFGQPYLHQNHYSSISSLPLHGAAYNRSLGIQ  165 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~C~~~~C~k~~~~~~~~f~~~~~~H~r~hkp~~C~~Cgk~F~~~~~L~  165 (236)
                      ||||+|. ||+.|.....|..|+++|+|+|||.|.  .||+                              +|.+...|.
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~--~C~k------------------------------~F~~~~~L~   47 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGK------------------------------KFKMKHHLV   47 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECT--TTSC------------------------------EESSSHHHH
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCC--CcCC------------------------------EecCHHHHH
Confidence            6999995 999999999999999999999999988  6665                              467777788


Q ss_pred             HHhhhc
Q 044109          166 VHSMIH  171 (236)
Q Consensus       166 ~H~~~H  171 (236)
                      .|+++|
T Consensus        48 ~H~r~H   53 (53)
T d2csha1          48 GHMKIH   53 (53)
T ss_dssp             HHHTTT
T ss_pred             HHHhcC
Confidence            887776

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.9e-14  Score=80.36  Aligned_cols=33  Identities=30%  Similarity=0.502  Sum_probs=32.1

Q ss_pred             CCCCCceeecccccccccCchhhhhhhhccCCC
Q 044109           82 HPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        82 ~htgekpf~C~~C~k~F~~~~~L~~H~r~Htge  114 (236)
                      +|||+|||+|.+|+|.|...+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            599999999999999999999999999999997

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.5e-14  Score=83.10  Aligned_cols=36  Identities=25%  Similarity=0.517  Sum_probs=33.9

Q ss_pred             CCceeecccccccccCchhhhhhhh-ccCCCCCCccC
Q 044109           85 EQRVFSCNYCQRKFYSSQALGGHQN-AHKRERTLAKR  120 (236)
Q Consensus        85 gekpf~C~~C~k~F~~~~~L~~H~r-~Htgekp~~C~  120 (236)
                      .+|||+|.+|||.|....+|.+|++ +|+|||||+|.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            4799999999999999999999975 89999999997

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.1e-13  Score=79.70  Aligned_cols=36  Identities=28%  Similarity=0.581  Sum_probs=33.8

Q ss_pred             CCCCCCCCceeecccccccccCchhhhhhhhccCCC
Q 044109           79 TNDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        79 ~~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htge  114 (236)
                      ...+|+++|||.|.+|||.|...+.|..|+++|+||
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            345899999999999999999999999999999997

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=2.2e-12  Score=75.20  Aligned_cols=33  Identities=24%  Similarity=0.462  Sum_probs=31.3

Q ss_pred             CCCCceeecccccccccCchhhhhhhhccCCCC
Q 044109           83 PSEQRVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        83 htgekpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      |||+|||+|.+|+|.|.++.+|.+|+++|+.+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            799999999999999999999999999999764

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.2e-12  Score=75.93  Aligned_cols=34  Identities=18%  Similarity=0.413  Sum_probs=32.3

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhccCCC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htge  114 (236)
                      .+|||||||+|.+|+++|...+.|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            3799999999999999999999999999999976

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.19  E-value=2.4e-12  Score=71.92  Aligned_cols=29  Identities=34%  Similarity=0.722  Sum_probs=28.2

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      |||.|.+|+|.|.+.+.|.+|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            79999999999999999999999999997

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.4e-12  Score=70.75  Aligned_cols=29  Identities=28%  Similarity=0.725  Sum_probs=28.1

Q ss_pred             ceeecccccccccCchhhhhhhhccCCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      |||.|.+|+|.|.+++.|.+|+++|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            79999999999999999999999999996

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=6.4e-12  Score=69.44  Aligned_cols=28  Identities=36%  Similarity=0.679  Sum_probs=27.2

Q ss_pred             CceeecccccccccCchhhhhhhhccCC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKR  113 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htg  113 (236)
                      ||||+|.+|+|.|.++.+|..|+|+|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6999999999999999999999999997

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.7e-11  Score=72.42  Aligned_cols=34  Identities=26%  Similarity=0.476  Sum_probs=31.7

Q ss_pred             CCCCCCCceeecccccccccCchhhhhhhhccCC
Q 044109           80 NDHPSEQRVFSCNYCQRKFYSSQALGGHQNAHKR  113 (236)
Q Consensus        80 ~~~htgekpf~C~~C~k~F~~~~~L~~H~r~Htg  113 (236)
                      .++|||||||+|.+|+++|.+++.|..|+++|.+
T Consensus         3 ~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            3589999999999999999999999999999974

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.6e-11  Score=71.98  Aligned_cols=32  Identities=28%  Similarity=0.500  Sum_probs=30.9

Q ss_pred             eeccc--ccccccCchhhhhhhhccCCCCCCccC
Q 044109           89 FSCNY--CQRKFYSSQALGGHQNAHKRERTLAKR  120 (236)
Q Consensus        89 f~C~~--C~k~F~~~~~L~~H~r~Htgekp~~C~  120 (236)
                      |.|++  |+|.|.++..|.+|+++|+|||||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            78987  999999999999999999999999997

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.5e-11  Score=70.58  Aligned_cols=33  Identities=21%  Similarity=0.448  Sum_probs=29.4

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhh-ccCC
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQN-AHKR  113 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r-~Htg  113 (236)
                      .+|||||||+|.+|++.|.+..+|..|++ .|++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            37999999999999999999999999975 4554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=3.4e-11  Score=74.82  Aligned_cols=34  Identities=21%  Similarity=0.576  Sum_probs=32.6

Q ss_pred             CCCCCceeeccc--ccccccCchhhhhhhhccCCCC
Q 044109           82 HPSEQRVFSCNY--CQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        82 ~htgekpf~C~~--C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      .|+++|||.|.+  |+|.|...++|..|+++|+|||
T Consensus        12 ~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            589999999988  9999999999999999999996

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=5.2e-11  Score=64.23  Aligned_cols=26  Identities=27%  Similarity=0.588  Sum_probs=25.1

Q ss_pred             ceeecccccccccCchhhhhhhhccC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Ht  112 (236)
                      |||+|.+|||.|...+.|..|+|+||
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            79999999999999999999999996

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.5e-10  Score=67.68  Aligned_cols=27  Identities=15%  Similarity=0.159  Sum_probs=21.4

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      |||.|++|||+|.+.++|.+|+++|..
T Consensus        11 kpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2          11 RRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             CCEecCCCCceeeCHHHHHHhCccCCC
Confidence            555555677779999999999999965

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.5e-10  Score=65.44  Aligned_cols=29  Identities=34%  Similarity=0.808  Sum_probs=27.3

Q ss_pred             ceeeccc--ccccccCchhhhhhhhccCCCC
Q 044109           87 RVFSCNY--CQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        87 kpf~C~~--C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      |||.|++  |+|+|.+.++|.+|+++|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            6999975  9999999999999999999996

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.3e-10  Score=65.02  Aligned_cols=28  Identities=21%  Similarity=0.624  Sum_probs=27.1

Q ss_pred             ceeeccc--ccccccCchhhhhhhhccCCC
Q 044109           87 RVFSCNY--CQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        87 kpf~C~~--C~k~F~~~~~L~~H~r~Htge  114 (236)
                      |||.|.+  |+|+|.++++|.+|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            7999999  999999999999999999997

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.2e-10  Score=65.30  Aligned_cols=28  Identities=25%  Similarity=0.660  Sum_probs=26.9

Q ss_pred             ceeeccc--ccccccCchhhhhhhhccCCC
Q 044109           87 RVFSCNY--CQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        87 kpf~C~~--C~k~F~~~~~L~~H~r~Htge  114 (236)
                      |||.|++  |+|+|.++++|.+|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            7999988  999999999999999999997

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.7e-10  Score=61.37  Aligned_cols=25  Identities=24%  Similarity=0.301  Sum_probs=24.3

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhc
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      |||.|.+|||+|.+++.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            7999999999999999999999998

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=9.1e-10  Score=64.79  Aligned_cols=20  Identities=20%  Similarity=0.232  Sum_probs=15.9

Q ss_pred             CCCcCCCChhhhHHHhhhcC
Q 044109          153 LHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       153 ~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      +||++|.++..|..|+++|-
T Consensus        16 ~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_          16 DCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             TTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCCEecCHHHHHHHHhcCc
Confidence            45556888999999999884

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.81  E-value=1.2e-09  Score=60.65  Aligned_cols=28  Identities=14%  Similarity=0.088  Sum_probs=26.2

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      |||.|++||++|.++..|++|+++|..+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            6999999999999999999999999754

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.3e-09  Score=60.53  Aligned_cols=28  Identities=18%  Similarity=0.125  Sum_probs=26.1

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      |||.|++|||+|.+++.|.+|+++|...
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            7999999999999999999999999654

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=1.1e-09  Score=60.16  Aligned_cols=26  Identities=15%  Similarity=0.103  Sum_probs=24.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      |||.|++|+|+|.++.+|.+|+++|.
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCCcc
Confidence            79999999999999999999999984

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=1.4e-09  Score=60.23  Aligned_cols=27  Identities=33%  Similarity=0.687  Sum_probs=25.9

Q ss_pred             ceeeccc--ccccccCchhhhhhhhccCC
Q 044109           87 RVFSCNY--CQRKFYSSQALGGHQNAHKR  113 (236)
Q Consensus        87 kpf~C~~--C~k~F~~~~~L~~H~r~Htg  113 (236)
                      |||.|.+  |+|+|.+..+|.+|+|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            7999988  99999999999999999987

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=4.4e-09  Score=59.55  Aligned_cols=29  Identities=28%  Similarity=0.710  Sum_probs=27.2

Q ss_pred             Cceeeccc--ccccccCchhhhhhhhccCCC
Q 044109           86 QRVFSCNY--CQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        86 ekpf~C~~--C~k~F~~~~~L~~H~r~Htge  114 (236)
                      ||||.|.+  |+|+|.+..+|.+|+++|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999998  999999999999999999864

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4.5e-09  Score=57.54  Aligned_cols=26  Identities=35%  Similarity=0.747  Sum_probs=24.8

Q ss_pred             ceeeccc--ccccccCchhhhhhhhccC
Q 044109           87 RVFSCNY--CQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        87 kpf~C~~--C~k~F~~~~~L~~H~r~Ht  112 (236)
                      |||.|++  |+|+|.+..+|.+|+|+||
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999998  9999999999999999996

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=5.8e-09  Score=59.51  Aligned_cols=27  Identities=22%  Similarity=0.192  Sum_probs=21.4

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      |||.|.+||++|.+.+.|..|+++|..
T Consensus         6 kpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           6 KPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             CCeeCCCCCCEeCchHHhHhhccccCC
Confidence            555555677779999999999999954

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=7e-09  Score=60.49  Aligned_cols=27  Identities=4%  Similarity=-0.045  Sum_probs=19.8

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      |||.|.+||++|.+++.|+.|+++|..
T Consensus         7 kPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           7 KPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            344444566678999999999999953

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.1e-08  Score=59.03  Aligned_cols=28  Identities=11%  Similarity=0.068  Sum_probs=22.9

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      |||.|++|+|.|.++.+|++|+++|.-.
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             ccccCCCCCCcccChHHHHHHccccCCc
Confidence            5666667778899999999999999643

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.55  E-value=1.2e-08  Score=58.89  Aligned_cols=31  Identities=52%  Similarity=1.156  Sum_probs=28.5

Q ss_pred             CceeecccccccccCchhhhhhhhccCCCCC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRERT  116 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htgekp  116 (236)
                      .+.|+|.+|+|.|.+.++|++||+.|..++.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r~   33 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDRA   33 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchHH
Confidence            4679999999999999999999999998764

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.2e-08  Score=55.76  Aligned_cols=27  Identities=15%  Similarity=0.181  Sum_probs=25.2

Q ss_pred             CCCCCCC--CCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPL--HGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~--Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      |||.|+.  |||+|.+++.|++|+++|..
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            6899988  99999999999999999975

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=8.6e-09  Score=63.68  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=17.2

Q ss_pred             CCcCCCChhhhHHHhhhcCCC
Q 044109          154 HGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       154 Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      |++.|.++.+|+.|+++|...
T Consensus        26 C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_          26 CTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             CCCEECSSSSHHHHHHHHTTT
T ss_pred             CCccccCchHHHhhcccccCC
Confidence            666788899999999999654

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.3e-08  Score=64.41  Aligned_cols=31  Identities=29%  Similarity=0.554  Sum_probs=29.6

Q ss_pred             CCCCCCceeecccccccccCchhhhhhhhcc
Q 044109           81 DHPSEQRVFSCNYCQRKFYSSQALGGHQNAH  111 (236)
Q Consensus        81 ~~htgekpf~C~~C~k~F~~~~~L~~H~r~H  111 (236)
                      .+|+|++||.|.+|++.|.+...|..|+++|
T Consensus        23 ~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1          23 SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             HHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             hccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            3799999999999999999999999999988

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.9e-08  Score=53.72  Aligned_cols=25  Identities=16%  Similarity=0.321  Sum_probs=23.2

Q ss_pred             CCCCCCC--CCcCCCChhhhHHHhhhc
Q 044109          147 SISSLPL--HGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       147 kp~~C~~--Cgk~F~~~~~L~~H~~~H  171 (236)
                      |||.|+.  |||+|.+..+|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            6899987  999999999999999998

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.9e-08  Score=57.33  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=27.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhh-hcCCCCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSM-IHKPSHTSTS  179 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~-~HkP~~~~~~  179 (236)
                      |||.|.+|||+|.+..+|++|++ +|....+..|
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C   37 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC   37 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             CCccCCCCCCCcCChHHhhccCcCccCCCcCcCC
Confidence            79999999999999999999975 7977666554

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.7e-08  Score=55.45  Aligned_cols=27  Identities=15%  Similarity=0.281  Sum_probs=24.6

Q ss_pred             CCCCCCC--CCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPL--HGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~--Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      |||.|+.  |||+|.+...|++|+++|..
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCC
Confidence            6899977  99999999999999999954

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=9.2e-08  Score=53.60  Aligned_cols=28  Identities=21%  Similarity=0.188  Sum_probs=24.9

Q ss_pred             CCCCCC--CCCcCCCChhhhHHHhhhcCCC
Q 044109          147 SISSLP--LHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       147 kp~~C~--~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      |||.|+  .|||+|.+..+|++|+++|...
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            689995  5999999999999999999754

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=1.2e-07  Score=53.45  Aligned_cols=27  Identities=19%  Similarity=0.122  Sum_probs=24.2

Q ss_pred             CCCCCCC--CCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPL--HGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~--Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      |||.|++  |||+|++..+|++|+++|.+
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            6888877  99999999999999999964

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=8.2e-08  Score=50.92  Aligned_cols=27  Identities=33%  Similarity=0.684  Sum_probs=25.7

Q ss_pred             CceeecccccccccCchhhhhhhhccC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Ht  112 (236)
                      ||||.|.+||++|..+...++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=5.9e-08  Score=56.40  Aligned_cols=24  Identities=13%  Similarity=0.108  Sum_probs=17.0

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhh
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      |||.|++|++.|.++.+|++|++.
T Consensus         7 kP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           7 KPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCEeCCCCcccccchHHHHHHccc
Confidence            344444566678999999999754

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.2e-07  Score=52.21  Aligned_cols=33  Identities=21%  Similarity=0.511  Sum_probs=30.4

Q ss_pred             CceeecccccccccCchhhhhhhhccCCCCCCc
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRERTLA  118 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htgekp~~  118 (236)
                      .|...|..|||.|.....|.+|...|++||||.
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            356789999999999999999999999999984

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.1e-07  Score=48.88  Aligned_cols=26  Identities=23%  Similarity=0.489  Sum_probs=24.7

Q ss_pred             eeecccccccccCchhhhhhhhccCC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNAHKR  113 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~Htg  113 (236)
                      |++|.+|+|.|+.+..|+.|+|.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            67899999999999999999999986

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=7.9e-08  Score=52.99  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=23.8

Q ss_pred             CCCCCCC--CCcCCCChhhhHHHhhhcC
Q 044109          147 SISSLPL--HGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       147 kp~~C~~--Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      |||.|++  |||+|.+..+|++|+++|.
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            6899977  9999999999999999984

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.5e-07  Score=48.43  Aligned_cols=27  Identities=37%  Similarity=0.594  Sum_probs=25.4

Q ss_pred             eeecccccccccCchhhhhhhhccCCC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~Htge  114 (236)
                      .+.|.+|||.|.-++.|++|+.+||||
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            468999999999999999999999986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=8.1e-07  Score=45.57  Aligned_cols=25  Identities=16%  Similarity=0.274  Sum_probs=23.4

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhhcC
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      |++|+.|+|.|+++..|+.|++.|.
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            6789999999999999999999985

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=4.6e-07  Score=47.95  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=23.8

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhc
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      |||.|.+||+.|.++...++|.++|
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhhc
Confidence            7999999999999999999999998

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.8e-06  Score=45.32  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=27.3

Q ss_pred             CceeecccccccccCchhhhhhhhccCCC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htge  114 (236)
                      +|||+|..|...-..++.|..|.|.|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            68999999999999999999999999984

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.6e-06  Score=45.73  Aligned_cols=28  Identities=21%  Similarity=0.395  Sum_probs=26.3

Q ss_pred             eeecccccccccCchhhhhhhhccCCCC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      .|.|.+|+....-.+.|+.|+|+||+||
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            3899999999999999999999999986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.2e-06  Score=49.47  Aligned_cols=31  Identities=19%  Similarity=0.265  Sum_probs=25.7

Q ss_pred             CCCCC--CCcCCCChhhhHHHhhhcCCCCCCCC
Q 044109          149 SSLPL--HGAAYNRSLGIQVHSMIHKPSHTSTS  179 (236)
Q Consensus       149 ~~C~~--Cgk~F~~~~~L~~H~~~HkP~~~~~~  179 (236)
                      |.|+.  ||++|.++..|++|+++|.+..+..|
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C   34 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC   34 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeC
Confidence            56765  99999999999999999977766654

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=2.8e-06  Score=45.60  Aligned_cols=29  Identities=21%  Similarity=0.533  Sum_probs=27.1

Q ss_pred             CceeecccccccccCchhhhhhhhccCCC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htge  114 (236)
                      ||||.|++|+..|..+..+.-|.|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            68999999999999999999999999874

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=6.5e-06  Score=42.38  Aligned_cols=26  Identities=35%  Similarity=0.648  Sum_probs=24.9

Q ss_pred             ecccccccccCchhhhhhhhccCCCC
Q 044109           90 SCNYCQRKFYSSQALGGHQNAHKRER  115 (236)
Q Consensus        90 ~C~~C~k~F~~~~~L~~H~r~Htgek  115 (236)
                      +|+.|.|.|.++..|+.|-|.|+|||
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999986

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.66  E-value=1.5e-05  Score=40.39  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=22.9

Q ss_pred             CCCCCCCcCCCChhhhHHHhhhcC
Q 044109          149 SSLPLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       149 ~~C~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      |+|.+|.++|..++.|.+|+++||
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999997

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.65  E-value=1e-05  Score=41.03  Aligned_cols=24  Identities=42%  Similarity=0.911  Sum_probs=23.0

Q ss_pred             eecccccccccCchhhhhhhhccC
Q 044109           89 FSCNYCQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        89 f~C~~C~k~F~~~~~L~~H~r~Ht  112 (236)
                      |+|-.|.+.|.-+++|.+|||+|+
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999996

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.61  E-value=8.5e-06  Score=43.06  Aligned_cols=28  Identities=32%  Similarity=0.628  Sum_probs=26.1

Q ss_pred             ceeeccc--ccccccCchhhhhhhhccCCC
Q 044109           87 RVFSCNY--CQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        87 kpf~C~~--C~k~F~~~~~L~~H~r~Htge  114 (236)
                      |||.|.+  |.|.|.+.-.|.+|..+|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            6899987  999999999999999999986

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.5e-05  Score=42.99  Aligned_cols=28  Identities=25%  Similarity=0.627  Sum_probs=25.1

Q ss_pred             ceeeccc--ccccccCchhhhhhh-hccCCC
Q 044109           87 RVFSCNY--CQRKFYSSQALGGHQ-NAHKRE  114 (236)
Q Consensus        87 kpf~C~~--C~k~F~~~~~L~~H~-r~Htge  114 (236)
                      |||.|.+  |.|.|++.+.-..|| |+|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            6999998  999999999999998 888754

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.7e-05  Score=41.35  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=22.8

Q ss_pred             CCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          149 SSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       149 ~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +.|.+|||+|..++.|++|+.+|..
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            4699999999999999999999964

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=1.5e-05  Score=42.70  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      |||.||+|+.+|.++.-+.-|.+.|..
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            799999999999999999999999964

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=5.4e-05  Score=40.00  Aligned_cols=28  Identities=29%  Similarity=0.691  Sum_probs=24.6

Q ss_pred             ceeecccccccccCchhhhhhhhc-cCCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNA-HKRE  114 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~-Htge  114 (236)
                      |||+|.+|..+-..+++|+.|+.+ |..|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            699999999999999999999876 5544

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=4e-05  Score=39.76  Aligned_cols=26  Identities=23%  Similarity=0.507  Sum_probs=24.8

Q ss_pred             ceeecccccccccCchhhhhhhhccC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Ht  112 (236)
                      |||+|..|...-...+.|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999996

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=7.3e-05  Score=39.25  Aligned_cols=29  Identities=34%  Similarity=0.645  Sum_probs=27.3

Q ss_pred             CceeecccccccccCchhhhhhhhccCCC
Q 044109           86 QRVFSCNYCQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        86 ekpf~C~~C~k~F~~~~~L~~H~r~Htge  114 (236)
                      +..|.|..|...|...-.|..|+-.|+||
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            56899999999999999999999999986

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=7.2e-05  Score=43.15  Aligned_cols=26  Identities=19%  Similarity=0.593  Sum_probs=23.5

Q ss_pred             CCCceeecccccccccCchhhhhhhh
Q 044109           84 SEQRVFSCNYCQRKFYSSQALGGHQN  109 (236)
Q Consensus        84 tgekpf~C~~C~k~F~~~~~L~~H~r  109 (236)
                      ||-|||.|..|+|+|-....+.+|.-
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            57899999999999999999999963

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=8e-05  Score=39.69  Aligned_cols=25  Identities=12%  Similarity=0.048  Sum_probs=21.9

Q ss_pred             CCCCCCC--CCcCCCChhhhHHHhhhc
Q 044109          147 SISSLPL--HGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       147 kp~~C~~--Cgk~F~~~~~L~~H~~~H  171 (236)
                      |||.|.+  |+|+|..++.|+.|++.+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhh
Confidence            6888876  999999999999999865

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=7.8e-05  Score=38.65  Aligned_cols=26  Identities=19%  Similarity=0.042  Sum_probs=23.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      |||+|..|...-...+.|+.|++||.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68999999998889999999999984

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00015  Score=38.60  Aligned_cols=27  Identities=15%  Similarity=0.556  Sum_probs=23.9

Q ss_pred             ceeeccc--ccccccCchhhhhhhhccCC
Q 044109           87 RVFSCNY--CQRKFYSSQALGGHQNAHKR  113 (236)
Q Consensus        87 kpf~C~~--C~k~F~~~~~L~~H~r~Htg  113 (236)
                      |||.|.+  |+|++...+.|..|++.+.|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899987  99999999999999987654

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.95  E-value=0.00011  Score=38.53  Aligned_cols=24  Identities=13%  Similarity=0.210  Sum_probs=20.4

Q ss_pred             CCCCCC--CCcCCCChhhhHHHhhhc
Q 044109          148 ISSLPL--HGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       148 p~~C~~--Cgk~F~~~~~L~~H~~~H  171 (236)
                      ||.|+.  |+++|..++-|++|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            677764  888899999999999887

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.94  E-value=0.00015  Score=38.96  Aligned_cols=26  Identities=27%  Similarity=0.589  Sum_probs=23.1

Q ss_pred             eeecccccccccCchhhhhhh-hccCC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQ-NAHKR  113 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~-r~Htg  113 (236)
                      ||.|.+|++.|.....|.+|+ +.|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            799999999999999999996 46765

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00026  Score=38.59  Aligned_cols=30  Identities=10%  Similarity=0.223  Sum_probs=25.3

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSHT  176 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~~  176 (236)
                      |...|..|||.|.....|.+|...|..+.+
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekp   33 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKP   33 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence            456799999999999999999999965543

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.65  E-value=0.00028  Score=37.90  Aligned_cols=25  Identities=24%  Similarity=0.190  Sum_probs=22.0

Q ss_pred             CCCCCCCCcCCCChhhhHHHh-hhcC
Q 044109          148 ISSLPLHGAAYNRSLGIQVHS-MIHK  172 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~-~~Hk  172 (236)
                      ||.|.+|++.|.++.-|-+|+ ++|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            789999999999999999995 5664

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.65  E-value=0.00046  Score=39.27  Aligned_cols=29  Identities=7%  Similarity=0.158  Sum_probs=25.8

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCCCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKPSH  175 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP~~  175 (236)
                      +.|.|.+|++.|.....|--|++.|+...
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            56899999999999999999999996543

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.001  Score=34.76  Aligned_cols=26  Identities=12%  Similarity=0.008  Sum_probs=23.6

Q ss_pred             CCCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          149 SSLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       149 ~~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      |.|+.||.....++-|+.|.+.|...
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            78999999999999999999999643

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.52  E-value=0.00042  Score=36.21  Aligned_cols=25  Identities=24%  Similarity=0.627  Sum_probs=22.0

Q ss_pred             ceeeccc--ccccccCchhhhhhhhcc
Q 044109           87 RVFSCNY--CQRKFYSSQALGGHQNAH  111 (236)
Q Consensus        87 kpf~C~~--C~k~F~~~~~L~~H~r~H  111 (236)
                      .||+|..  |++.|...+.|++|..+|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5899975  999999999999998887

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0004  Score=37.26  Aligned_cols=26  Identities=12%  Similarity=0.035  Sum_probs=20.3

Q ss_pred             CCCCCCC--CCcCCCChhhhHHHh-hhcC
Q 044109          147 SISSLPL--HGAAYNRSLGIQVHS-MIHK  172 (236)
Q Consensus       147 kp~~C~~--Cgk~F~~~~~L~~H~-~~Hk  172 (236)
                      |||.|+.  |.|+|+..+.-..|+ |+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            5777766  888888888888887 7774

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00064  Score=35.38  Aligned_cols=27  Identities=19%  Similarity=0.025  Sum_probs=22.6

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||+|.+|...-..++.|..|.+.|..
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            588888888877788999999999864

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0008  Score=35.19  Aligned_cols=23  Identities=26%  Similarity=0.665  Sum_probs=21.7

Q ss_pred             eeecccccccccCchhhhhhhhc
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNA  110 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~  110 (236)
                      ||.|.+|.-.|.++.+|..||..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999999999999999999974

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00055  Score=39.35  Aligned_cols=22  Identities=5%  Similarity=-0.041  Sum_probs=20.1

Q ss_pred             CCCCCCCCCcCCCChhhhHHHh
Q 044109          147 SISSLPLHGAAYNRSLGIQVHS  168 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~  168 (236)
                      |||.|.+|+|.|.++..+.+|.
T Consensus         4 KPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           4 KPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCEECSSSCCEESCHHHHHHHH
T ss_pred             CceeccchhhhhhhHHHHHHhh
Confidence            7999999999999999998885

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.001  Score=34.18  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=20.5

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhh
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      ||+|..|||.|.++.+|-.|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            78999999999999999999643

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0021  Score=33.71  Aligned_cols=24  Identities=8%  Similarity=-0.058  Sum_probs=21.8

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhh
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      |||.|..|...-...++|+.|.++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            699999999988899999999876

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0018  Score=36.55  Aligned_cols=28  Identities=25%  Similarity=0.656  Sum_probs=24.1

Q ss_pred             CCceeecc--cccccccCchhhhhhhhccC
Q 044109           85 EQRVFSCN--YCQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        85 gekpf~C~--~C~k~F~~~~~L~~H~r~Ht  112 (236)
                      .+|||.|.  -|+.+|.+...|..|+..|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            47999995  59999999999999987764

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.0039  Score=31.68  Aligned_cols=25  Identities=16%  Similarity=0.202  Sum_probs=22.5

Q ss_pred             CCCCCCcCCCChhhhHHHhhhcCCC
Q 044109          150 SLPLHGAAYNRSLGIQVHSMIHKPS  174 (236)
Q Consensus       150 ~C~~Cgk~F~~~~~L~~H~~~HkP~  174 (236)
                      +|+.|.|.|..+.-|+.|-+.|...
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            6999999999999999999988654

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.54  E-value=0.0022  Score=32.25  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             CCCCCCCcCCCChhhhHHHhhh
Q 044109          149 SSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       149 ~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      |.||.|-|.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999765

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0021  Score=33.60  Aligned_cols=24  Identities=33%  Similarity=0.653  Sum_probs=21.6

Q ss_pred             ceeecccccccccCchhhhhhhhc
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNA  110 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~  110 (236)
                      |||+|.+|.---.+.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            699999999888999999999864

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0029  Score=33.02  Aligned_cols=23  Identities=4%  Similarity=-0.054  Sum_probs=21.3

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhh
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      ||.|..|.-.|..+.+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            78999999999999999999865

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.05  E-value=0.0036  Score=32.69  Aligned_cols=27  Identities=11%  Similarity=0.051  Sum_probs=21.6

Q ss_pred             CCCCCCC--CCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPL--HGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~--Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      +||.|..  |.|.|..-..|.+|..+|..
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CCcCcccccccccchhhhhhhhhhccccC
Confidence            5777764  88889998999999988853

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0035  Score=34.50  Aligned_cols=27  Identities=33%  Similarity=0.534  Sum_probs=21.2

Q ss_pred             eeecc--ccc---ccccCchhhhhhhhccCCC
Q 044109           88 VFSCN--YCQ---RKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        88 pf~C~--~C~---k~F~~~~~L~~H~r~Htge  114 (236)
                      .|.|.  -|.   +.|.....|..|+|+||||
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            35553  354   5699999999999999997

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0092  Score=35.30  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=24.0

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      -.|.|..|||.|....-|+.|...|--
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            358899999999999999999998854

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.51  E-value=0.0067  Score=30.32  Aligned_cols=22  Identities=23%  Similarity=0.644  Sum_probs=20.6

Q ss_pred             eeecccccccccCchhhhhhhh
Q 044109           88 VFSCNYCQRKFYSSQALGGHQN  109 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r  109 (236)
                      ||+|.-|...|.++..|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999974

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.011  Score=30.43  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=23.4

Q ss_pred             eeecccccccccCchhhhhhhhccCC
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNAHKR  113 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~Htg  113 (236)
                      |-+|..|....+++.+|+.|.|+|..
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            55899999999999999999999964

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.0082  Score=30.88  Aligned_cols=26  Identities=12%  Similarity=0.138  Sum_probs=22.8

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      |-+|+.|..+...+..|+.|.|+|-+
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            55799999999999999999999953

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.33  E-value=0.007  Score=31.46  Aligned_cols=26  Identities=12%  Similarity=0.356  Sum_probs=23.4

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhhcCC
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      .|.|..|...|.++..|+.|+..|.+
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            57899999999999999999988864

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.29  E-value=0.0075  Score=30.87  Aligned_cols=22  Identities=23%  Similarity=0.637  Sum_probs=19.8

Q ss_pred             eeecccccccccCchhhhhhhh
Q 044109           88 VFSCNYCQRKFYSSQALGGHQN  109 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r  109 (236)
                      ||+|..|||.+..+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7999999999999999999864

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.95  E-value=0.0095  Score=29.75  Aligned_cols=22  Identities=9%  Similarity=0.081  Sum_probs=20.2

Q ss_pred             CCCCCCCCcCCCChhhhHHHhh
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSM  169 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~  169 (236)
                      ||+|..|...|.++..|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999973

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.009  Score=33.59  Aligned_cols=26  Identities=19%  Similarity=0.199  Sum_probs=20.3

Q ss_pred             CCCCC--CCCCcCCCChhhhHHHhhhcC
Q 044109          147 SISSL--PLHGAAYNRSLGIQVHSMIHK  172 (236)
Q Consensus       147 kp~~C--~~Cgk~F~~~~~L~~H~~~Hk  172 (236)
                      |||.|  +-|+.+|.....|..|...|.
T Consensus         5 kPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CceecCCCCccccccchHHHHHhhhhhe
Confidence            56666  558888998888999888774

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.013  Score=30.56  Aligned_cols=24  Identities=4%  Similarity=-0.135  Sum_probs=20.7

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhh
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      +||+|..|.-.-.++++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            589999998888899999999753

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.032  Score=30.51  Aligned_cols=19  Identities=16%  Similarity=0.125  Sum_probs=15.5

Q ss_pred             CcCCCChhhhHHHhhhcCC
Q 044109          155 GAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       155 gk~F~~~~~L~~H~~~HkP  173 (236)
                      ++.|.....|..|+|+|..
T Consensus        14 ~~pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHC
T ss_pred             CCcchhHHHHHHHHhhcCC
Confidence            5668888899999999854

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.83  E-value=0.019  Score=28.67  Aligned_cols=23  Identities=22%  Similarity=0.720  Sum_probs=20.6

Q ss_pred             eeecccccccccCchhhhhhhhc
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNA  110 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~  110 (236)
                      .|.|++|-|.|..+.++..|..+
T Consensus         1 vypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCCchhhHHhccccCceEEEEE
Confidence            48999999999999999999764

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.019  Score=29.38  Aligned_cols=23  Identities=17%  Similarity=0.085  Sum_probs=20.6

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhh
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      .|.||.|+....+++.|+.|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            47899999999999999999864

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.017  Score=31.51  Aligned_cols=23  Identities=13%  Similarity=0.079  Sum_probs=20.0

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhh
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      .|.|..|||.|.++..+.+|.-.
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            47899999999999999999754

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.01  E-value=0.021  Score=29.02  Aligned_cols=24  Identities=29%  Similarity=0.728  Sum_probs=20.9

Q ss_pred             eeccc--ccccccCchhhhhhhhccC
Q 044109           89 FSCNY--CQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        89 f~C~~--C~k~F~~~~~L~~H~r~Ht  112 (236)
                      |.|.+  |+|.|.....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            67764  9999999999999998886

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.57  E-value=0.076  Score=28.51  Aligned_cols=23  Identities=13%  Similarity=0.098  Sum_probs=20.3

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhh
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      .|.|+-||-+|+..+.|..|+.-
T Consensus         8 rf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             ceeccccceeecChhHHHhhhhe
Confidence            47799999999999999999853

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=0.11  Score=26.51  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=18.3

Q ss_pred             CCCcCCCChhhhHHHhhhcCC
Q 044109          153 LHGAAYNRSLGIQVHSMIHKP  173 (236)
Q Consensus       153 ~Cgk~F~~~~~L~~H~~~HkP  173 (236)
                      -|+|-|...+.++.|+.+|-|
T Consensus         8 gC~K~Frd~saMRKHlhtHGP   28 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHGP   28 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGSC
T ss_pred             cHHHHhhchHHHHHHhhccCC
Confidence            488899999999999998865

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.71  E-value=0.063  Score=31.58  Aligned_cols=26  Identities=23%  Similarity=0.626  Sum_probs=22.8

Q ss_pred             ceeecccccccccCchhhhhhhhccC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHK  112 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Ht  112 (236)
                      -.|.|-.|+|.|.....|+.|..-|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            46899999999999999999987663

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.17  E-value=0.085  Score=27.72  Aligned_cols=28  Identities=21%  Similarity=0.592  Sum_probs=24.6

Q ss_pred             ceeeccc--ccccccCchhhhhhhhccCCC
Q 044109           87 RVFSCNY--CQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        87 kpf~C~~--C~k~F~~~~~L~~H~r~Htge  114 (236)
                      |.|.|.+  |+-.|...-.|..|.-.||||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            5688975  999999999999999999986

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.48  E-value=0.095  Score=26.50  Aligned_cols=20  Identities=25%  Similarity=0.466  Sum_probs=16.9

Q ss_pred             CCCCcCCCChhhhHHHhhhc
Q 044109          152 PLHGAAYNRSLGIQVHSMIH  171 (236)
Q Consensus       152 ~~Cgk~F~~~~~L~~H~~~H  171 (236)
                      .-|+|.|.....|+.|+-+|
T Consensus         7 e~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeecc
Confidence            35999999999999998776

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=0.14  Score=27.67  Aligned_cols=27  Identities=19%  Similarity=0.524  Sum_probs=22.3

Q ss_pred             ceeecccccccccCchhhhhhhhccCC
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQNAHKR  113 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r~Htg  113 (236)
                      -.|.|..|+|.|.....+.+|-..-+|
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCC
Confidence            358999999999999999999655444

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=85.52  E-value=0.15  Score=29.88  Aligned_cols=24  Identities=17%  Similarity=0.207  Sum_probs=21.6

Q ss_pred             CCCCCCCCCcCCCChhhhHHHhhh
Q 044109          147 SISSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       147 kp~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      .|..||+|+....++-+|++|...
T Consensus        23 qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          23 QPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999744

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.16  E-value=0.22  Score=26.59  Aligned_cols=23  Identities=35%  Similarity=0.532  Sum_probs=20.9

Q ss_pred             ceeecccccccccCchhhhhhhh
Q 044109           87 RVFSCNYCQRKFYSSQALGGHQN  109 (236)
Q Consensus        87 kpf~C~~C~k~F~~~~~L~~H~r  109 (236)
                      -.|.|.-||-+|++.+.|..||.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            45899999999999999999985

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.87  E-value=0.36  Score=24.82  Aligned_cols=23  Identities=17%  Similarity=0.236  Sum_probs=20.0

Q ss_pred             CCCCCCCCcCCCChhhhHHHhhh
Q 044109          148 ISSLPLHGAAYNRSLGIQVHSMI  170 (236)
Q Consensus       148 p~~C~~Cgk~F~~~~~L~~H~~~  170 (236)
                      .|.|..|||......+++-|.+.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            58899999999999999999654

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.70  E-value=0.12  Score=32.86  Aligned_cols=26  Identities=27%  Similarity=0.439  Sum_probs=23.0

Q ss_pred             CCceeecccccccccCchhhhhhhhc
Q 044109           85 EQRVFSCNYCQRKFYSSQALGGHQNA  110 (236)
Q Consensus        85 gekpf~C~~C~k~F~~~~~L~~H~r~  110 (236)
                      |.-.|-|..|.|.|.+...|..|+++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            44569999999999999999999864

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.97  E-value=0.25  Score=25.05  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=20.6

Q ss_pred             eeecccccccccCchhhhhhhhc
Q 044109           88 VFSCNYCQRKFYSSQALGGHQNA  110 (236)
Q Consensus        88 pf~C~~C~k~F~~~~~L~~H~r~  110 (236)
                      .|.|+.|.-....++.|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            48999999999999999999763

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=81.07  E-value=0.28  Score=26.52  Aligned_cols=28  Identities=21%  Similarity=0.528  Sum_probs=23.6

Q ss_pred             CCceeecccccccccCchhhhhhhhc-cC
Q 044109           85 EQRVFSCNYCQRKFYSSQALGGHQNA-HK  112 (236)
Q Consensus        85 gekpf~C~~C~k~F~~~~~L~~H~r~-Ht  112 (236)
                      |+..|.|..|.+.+..-+++-+|.-+ |+
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            45689999999999999999999654 44

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.27  E-value=0.29  Score=30.63  Aligned_cols=31  Identities=29%  Similarity=0.605  Sum_probs=26.9

Q ss_pred             CCCceeecccccccccCchhhhhhhhccCCC
Q 044109           84 SEQRVFSCNYCQRKFYSSQALGGHQNAHKRE  114 (236)
Q Consensus        84 tgekpf~C~~C~k~F~~~~~L~~H~r~Htge  114 (236)
                      .+...|+|..|.-+|.+...|..|...|..|
T Consensus        14 ~~s~~yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1          14 LQNSTYQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             CCCSCEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             cCCceeeechhHHHHhhHHHHHHHHHhccHH
Confidence            3446799999999999999999999988754