Citrus Sinensis ID: 044122
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LEV7 | 503 | Probable folate-biopterin | yes | no | 0.975 | 0.954 | 0.645 | 1e-178 | |
| Q9SQN2 | 497 | Probable folate-biopterin | no | no | 0.981 | 0.971 | 0.465 | 1e-134 | |
| Q5FV41 | 499 | Probable folate-biopterin | no | no | 0.953 | 0.939 | 0.478 | 1e-131 | |
| F4KIL8 | 492 | Probable folate-biopterin | no | no | 0.941 | 0.941 | 0.458 | 1e-118 | |
| Q8RWQ5 | 491 | Probable folate-biopterin | no | no | 0.859 | 0.861 | 0.270 | 1e-42 | |
| Q9SKZ5 | 560 | Folate-biopterin transpor | no | no | 0.792 | 0.696 | 0.288 | 6e-41 | |
| Q55721 | 494 | Folate-biopterin transpor | N/A | no | 0.829 | 0.825 | 0.284 | 4e-39 | |
| F4I5Q2 | 542 | Probable folate-biopterin | no | no | 0.75 | 0.680 | 0.253 | 3e-20 | |
| O22780 | 538 | Probable folate-biopterin | no | no | 0.764 | 0.698 | 0.241 | 4e-19 | |
| Q9XIQ7 | 442 | Probable folate-biopterin | no | no | 0.808 | 0.900 | 0.229 | 8e-16 |
| >sp|Q9LEV7|FBT6_ARATH Probable folate-biopterin transporter 6 OS=Arabidopsis thaliana GN=At5g10820 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 624 bits (1610), Expect = e-178, Method: Compositional matrix adjust.
Identities = 311/482 (64%), Positives = 389/482 (80%), Gaps = 2/482 (0%)
Query: 4 SEKQEVGPASCKRTKFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVV 63
S+ E+ +R +S++++P QWLQMLSS+L+ SF+ G+VLVYG+ QGFSGS FKVV
Sbjct: 21 SDHSEI-KTKARRNAVVSVLIQPFQWLQMLSSRLNLSFVLGVVLVYGVNQGFSGSIFKVV 79
Query: 64 TDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLV 123
TDYYWKDVQ+VQPS VQ+Y+GLYY+PWVM+PIWG+FTD FPIKGY R+PYFV++GVLGLV
Sbjct: 80 TDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDVFPIKGYKRKPYFVVSGVLGLV 139
Query: 124 SALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCS 183
SA+ + +LGKLP ALAL+CL+G++ MAIADVVIDACIA NSI R+LAPD+QSLC CS
Sbjct: 140 SAIAIVVLGKLPAALALSCLLGVSAAMAIADVVIDACIATNSINIRSLAPDIQSLCMVCS 199
Query: 184 GAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEK-KKAIES 242
AG+L+GY++SG FVH LG QGALG+LA P +++LGF IYE R+++ +K KK +
Sbjct: 200 SAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGFFIYEKRSSTVPTQKTKKDTDG 259
Query: 243 VIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIY 302
+ +KGMCK++K P+VWKPSLYMF+S A++ISTHEG FYW TDP AGPAFSQEFVG+IY
Sbjct: 260 LGVAVKGMCKTVKYPEVWKPSLYMFISLALNISTHEGHFYWYTDPTAGPAFSQEFVGIIY 319
Query: 303 ALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFV 362
A+GA+AS+ GVLIYHK LK Y +RN+LFFAQLLY SGMLDL+FI RWNL LGIPDS FV
Sbjct: 320 AVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGMLDLVFIKRWNLTLGIPDSLFV 379
Query: 363 ITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLL 422
ITE+ + ++S++RWIPM+VLSTRLCP GIEGTFFA LMCID G L SKWGGG VLH
Sbjct: 380 ITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLMCIDSFGQLASKWGGGFVLHAF 439
Query: 423 HVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDTITDDEGMR 482
VTR D+ NLWLVILIRN+LR T+ +FLVP +H ++L+P D+L K DD+ ++
Sbjct: 440 GVTRHDFGNLWLVILIRNILRLVTVCFVFLVPDSDHLDDLVPSDVLPKKQSEDDDDDDIK 499
Query: 483 LL 484
LL
Sbjct: 500 LL 501
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SQN2|FBT3_ARATH Probable folate-biopterin transporter 3 OS=Arabidopsis thaliana GN=At1g79710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/492 (46%), Positives = 338/492 (68%), Gaps = 9/492 (1%)
Query: 2 NSSEKQEVGPAS------CKRTKFLSLVLE-PVQWLQMLSSQLHSSFIFGIVLVYGLCQG 54
N SE+ E S K+ L LVL+ P++WL+ML +LH SF FG+++VYG+ QG
Sbjct: 3 NRSEEAEYENDSRRNHQDKKKEGVLDLVLKRPLRWLRMLIEELHWSFFFGVIIVYGVSQG 62
Query: 55 FSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYF 114
KV T YY+KD QK+QPS QIY+GL +PW++KP+WG+ TD P+ GY RRPYF
Sbjct: 63 LGKGLSKVSTQYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDVVPVLGYRRRPYF 122
Query: 115 VIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPD 174
++AG L ++S +++ L L +ALAL+CL+ + G+AIADV IDAC+ + SI LA D
Sbjct: 123 ILAGFLAMISMMVLWLHTNLHLALALSCLVAGSAGVAIADVTIDACVTQCSISHPTLAAD 182
Query: 175 MQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHF 234
MQSLC CS GSL+G+S SG VH +G +G G+L + LL+V+G V+ E+ + S
Sbjct: 183 MQSLCGLCSSIGSLVGFSLSGVLVHLVGSKGVYGLLGVTAGLLVVVGMVLKESPSRS--L 240
Query: 235 EKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFS 294
+K + + + K+ + +VW+P L+M LS AVS+ HEG FYW TD K GP+FS
Sbjct: 241 GRKHVNDKFLDAGSAIWKTFQYGEVWRPCLFMLLSAAVSLHIHEGMFYWYTDSKDGPSFS 300
Query: 295 QEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLAL 354
+E VG I + GA+ S++G+L+Y LK++P+RN++F+A L +SG LDLI +LR NL L
Sbjct: 301 KEAVGSIMSFGAIGSLVGILLYQNFLKNFPFRNVVFWALSLSVLSGFLDLILVLRINLKL 360
Query: 355 GIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWG 414
G+PD FF++ ++ VSH++SR++W+P++VLS++LCP G+EGTFFALLM I+ +G L+S WG
Sbjct: 361 GLPDYFFIVVDEFVSHMISRIKWLPLLVLSSKLCPAGMEGTFFALLMSIEHIGHLVSSWG 420
Query: 415 GGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDT 474
GG++LH L VTRT + NLWLVI+IR++LR +GL+FL+P + ++ ++P ++L
Sbjct: 421 GGVLLHALKVTRTQFDNLWLVIVIRSLLRVIPIGLVFLIPNVDSNSTILPAEMLTSRISE 480
Query: 475 ITDDEGMRLLSI 486
D E + + ++
Sbjct: 481 GVDTEKIEMTAL 492
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5FV41|FBT2_ARATH Probable folate-biopterin transporter 2 OS=Arabidopsis thaliana GN=At5g25050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/472 (47%), Positives = 320/472 (67%), Gaps = 3/472 (0%)
Query: 16 RTKFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQ 75
+ F ++V PV+WL+MLSS+LH SF+FG+V +YG+ QG GS +V T+YY KDVQKVQ
Sbjct: 20 ESNFRNVVCGPVRWLKMLSSELHWSFVFGVVSLYGINQGLGGSLGRVATEYYMKDVQKVQ 79
Query: 76 PSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLP 135
PS Q + +PW++KP+WGI TD PI G+HRRPYF++AGVLG+VS L ++L L
Sbjct: 80 PSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRPYFILAGVLGVVSLLFISLHSNLH 139
Query: 136 IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSG 195
+ LAL + + MAIADV IDAC A NSI+ +LA DMQSLC+ S G+L+G+ SG
Sbjct: 140 LYLALFWMTISSAAMAIADVTIDACTAYNSIKHPSLASDMQSLCSLSSSIGALLGFFMSG 199
Query: 196 FFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIK 255
VH +G +G G+L P L+ V+G V E F K+ + K M +++K
Sbjct: 200 ILVHLVGSKGVFGLLTFPFALVSVVGIVFSEPHVPG--FSYKQVNQKFTDAGKAMWRTMK 257
Query: 256 LPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLI 315
VW+PSLYM++S + ++ HEG FYW TD K GP F+QE VG I ++G++ SI+ +
Sbjct: 258 CSDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKDGPLFAQETVGFILSIGSIGSILAATL 317
Query: 316 YHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRL 375
Y LKD+P+R L + QLL+ +SGMLDLI + R NL G+PD F++ ++ VS ++ RL
Sbjct: 318 YQLVLKDHPFRGLCLWTQLLFALSGMLDLILVFRLNLKFGLPDYLFIVVDEIVSQMIGRL 377
Query: 376 RWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLV 435
+W+P++VL+++LCP GIEGTFFALLM ID G + S W GGI+LH+L VTRT++ NLWL
Sbjct: 378 KWMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLMTSSWLGGIMLHVLKVTRTEFGNLWLA 437
Query: 436 ILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDTITDD-EGMRLLSI 486
+L+RNV+R L +FLVPKG+ + +P +++ ++SD D+ EG R L +
Sbjct: 438 VLVRNVMRLLPLCFLFLVPKGDQNTFKLPDEIMGEDSDEEKDEKEGTRNLEL 489
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|F4KIL8|FBT5_ARATH Probable folate-biopterin transporter 5 OS=Arabidopsis thaliana GN=At5g25040 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/473 (45%), Positives = 310/473 (65%), Gaps = 10/473 (2%)
Query: 15 KRTKFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKV 74
+ + S+V PV+WL+ML+S+LH S++F +V G+ QGF S V TDYY KDVQKV
Sbjct: 19 RESNLRSVVCGPVRWLKMLASKLHWSYVFAVVSNCGINQGFGYSLGHVATDYYMKDVQKV 78
Query: 75 QPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGK 133
QPS Q + + W++ KP++GI TD PI G+HRRPYF++AGV+G+VS L ++L
Sbjct: 79 QPSQYQALSAITRISWIIFKPLFGILTDVLPIFGFHRRPYFILAGVIGVVSLLFISLQSN 138
Query: 134 LPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSS 193
L + LAL + + MAIADV IDAC NS + +LA DMQSLC+ G L+G+
Sbjct: 139 LHLYLALFWMTISSAAMAIADVTIDACTTYNSNKHPSLASDMQSLCSLSYSIGELLGFFM 198
Query: 194 SGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKS 253
SG VH +G +G G+L L+ V+G + E R H F K+ + MK M ++
Sbjct: 199 SGILVHLVGSKGVFGLLTFTFALVSVVGVLFSEPRV--HGFSFKQNFTN---AMKAMWRT 253
Query: 254 IKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGV 313
IK VW+PSLYMF++ A+ + EG FYW TD K GP F+QE VG I ++G++ SI+GV
Sbjct: 254 IKCSDVWQPSLYMFITRALGLDIKEGLFYWFTDSKDGPLFAQETVGFILSIGSIGSILGV 313
Query: 314 LIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVS 373
L+Y+ LKD+P+R L + QLL+ +SGM DLI +LR NL G+PD F++ + VS ++
Sbjct: 314 LLYNLRLKDHPFRKLFLWTQLLFALSGMFDLILVLRLNLKFGLPDYLFIVVDGIVSKMII 373
Query: 374 RLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLW 433
RL W+ + VL+T+LCP GIEGTFFALLM ID G + S W GG +LH+L VTRT++ NLW
Sbjct: 374 RLTWMVIFVLNTKLCPHGIEGTFFALLMSIDNAGLMTSSWLGGKMLHVLKVTRTEFGNLW 433
Query: 434 LVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDTITDDEGMRLLSI 486
L +L+RNV+R + +FLVP+G+ + +P +++ ++S ++EG R L +
Sbjct: 434 LAVLVRNVMRLLPICFLFLVPQGDQNTFKLPAEIMGEDS----EEEGTRNLEL 482
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWQ5|FBT4_ARATH Probable folate-biopterin transporter 4 OS=Arabidopsis thaliana GN=At5g54860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 132/488 (27%), Positives = 231/488 (47%), Gaps = 65/488 (13%)
Query: 27 VQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLY 86
+ WL+ L S +F++ + L+Y QGF SF Y KD ++ PS Q +
Sbjct: 2 IHWLKQLRSAFGVAFLWLVCLIY-FTQGFR-SFVWTAVSYQLKDRLQLSPSASQFVFSVA 59
Query: 87 YLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGI 146
+ PW +KP++GI +D PI G R PY VI+ VL LV L++ L + +L +I +
Sbjct: 60 FFPWSIKPLYGIISDCIPIGGKKRTPYLVISTVLSLVPWLVLGL-DSTSRSSSLYLMIFL 118
Query: 147 TG---GMAIADVVIDACIARN-SIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG 202
T G A+ADVVIDA IA +E + A D+QS+ F G + G G+ + +L
Sbjct: 119 TVQNLGSAMADVVIDAMIAEAVRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLK 178
Query: 203 HQGALGILAIPPTLLIVLGFVIYETRAT---------SHHFEKK---------------- 237
+ + + P L ++ ++ E+ A S+ FE+K
Sbjct: 179 IETIFLLFTVLPALQLLSCALVEESPANNEPLPELLDSNEFEEKSLTSNDNYPDTSKSNT 238
Query: 238 -------------------------KAIESVIF-TMK----GMCKSIKLPQVWKPSLYMF 267
K++ S F ++K G+ ++ K P + +P + F
Sbjct: 239 RRRKGQKKGKKGDSNGKSETQKKQSKSLASQWFQSLKAATFGLGRAFKQPIILRPMAWFF 298
Query: 268 LSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRN 327
++ + FY+ T+ A F+G +G + + G IY++ L+D R
Sbjct: 299 IAHITVPNLSTVMFYYQTEVLQLDA---AFLGTARVVGWLGLMFGTFIYNRYLQDMTLRK 355
Query: 328 LLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRL 387
L FA + ++ +LD++ + R N+ G+ D V+ + +++L+++P ++LS RL
Sbjct: 356 SLLFAHIGLSVTILLDMVLVSRANVGYGVSDKTMVLFGSALGDAINQLKFMPFLILSGRL 415
Query: 388 CPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATL 447
CP GIEGT FAL M I+ LG+ + + G + LL ++ + N+++ + I+ + +
Sbjct: 416 CPPGIEGTLFALFMSINNLGNTVGSFMGAGLASLLGISSGSFDNMFMGLAIQVFCTYIPV 475
Query: 448 GLIFLVPK 455
+FL+PK
Sbjct: 476 LFLFLIPK 483
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKZ5|FBT1_ARATH Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana GN=At2g32040 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 207/406 (50%), Gaps = 16/406 (3%)
Query: 44 GIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAF 103
+ +VY QG G ++ +Y KD + P+ + GL LPW++KP++G +D+
Sbjct: 129 AVAMVY-FVQGVLG-LARLAVSFYLKDDLHLDPAETAVITGLSSLPWLVKPLYGFISDSV 186
Query: 104 PIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIAR 163
P+ GY RR Y V++G+LG S ++A + A L+G VV + R
Sbjct: 187 PLFGYRRRSYLVLSGLLGAFSWSLMAGFVDSKYSAAFCILLGSLSVAFSDVVVDSMVVER 246
Query: 164 NSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFV 223
E+++++ +QSLC S G ++ SG V G + G+ A+ P + + +
Sbjct: 247 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGVTALLPLITSAVAVL 306
Query: 224 IYETRATSHHFEKKKAI--------ESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSIS 275
+ E R +K+ I ++ M + +IK P V+ P+L++FL + +
Sbjct: 307 VNEQRVVRPASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFLPTLFIFL-WQATPH 365
Query: 276 THEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLL 335
+ FY+ T+ K G F+ EF+G + + ++AS++GV +Y+ LK P R + F +
Sbjct: 366 SDSAMFYFTTN-KLG--FTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPLRKI-FLVTTI 421
Query: 336 YGIS-GMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEG 394
+G GM +I + +N LGI D +F I + + ++++ ++P++VL+ RLCP G+E
Sbjct: 422 FGTGLGMTQVILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAARLCPEGMEA 481
Query: 395 TFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRN 440
T FA LM I GS++ G + +TR + NL +I++ N
Sbjct: 482 TLFATLMSISNGGSVLGGLMGAGLTQAFGITRDSFGNLSTLIILCN 527
|
Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q55721|FBT_SYNY3 Folate-biopterin transporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0642 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 218/425 (51%), Gaps = 17/425 (4%)
Query: 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVL 120
++ ++ KD + P+ + IGL PW++KP+ G+ +D P+ GY RR Y ++G++
Sbjct: 53 RLAVSFFLKDELGLSPAAMGALIGLGAAPWILKPVLGLMSDTVPLFGYRRRSYLWLSGLM 112
Query: 121 GLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDA-CIARNSIETRALAPDMQSLC 179
G L+ A L L + +AI DV++D+ + R E+ A +QSL
Sbjct: 113 GSAGWLLFAAWVSSGTQAGLVLLF-TSLSVAIGDVIVDSLVVERAQRESLAQVGSLQSLT 171
Query: 180 AFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKA 239
+ G +I +SG + + I AI P L + F+I E +T+ EK +
Sbjct: 172 WGAAAVGGIITAYASGALLEWFSTRTVFAITAIFPLLTVGAAFLISEV-STAEEEEKPQP 230
Query: 240 IESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVG 299
+ K + ++++ + P+L++F F + + E F++ T + G F +F+G
Sbjct: 231 KAQI----KLVWQAVRQKTILLPTLFIF--FWQATPSAESAFFYFTTNELG--FEPKFLG 282
Query: 300 VIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDS 359
+ + +VA +IGV +Y + LK P+R ++ ++ ++ + G+ LI I N A+GI D
Sbjct: 283 RVRLVTSVAGLIGVGLYQRFLKTLPFRVIMGWSTVISSLLGLTTLILITHANRAMGIDDH 342
Query: 360 FFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVL 419
+F + + + + ++ ++P++VL+ RLCP GIE T FALLM + L ++S G ++
Sbjct: 343 WFSLGDSIILTVTGQIAFMPVLVLAARLCPPGIEATLFALLMSVMNLAGVLSFEVGSLLT 402
Query: 420 HLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDTITDDE 479
H L VT T + NL L+++I N+ L + L+P G+ P + + DD
Sbjct: 403 HWLGVTETQFDNLALLVIITNLSTLLPLPFLGLLPAGD------PQVKDKTEKEDNPDDP 456
Query: 480 GMRLL 484
G RL+
Sbjct: 457 GDRLV 461
|
Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|F4I5Q2|FBT8_ARATH Probable folate-biopterin transporter 8, chloroplastic OS=Arabidopsis thaliana GN=At1g04570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 182/391 (46%), Gaps = 22/391 (5%)
Query: 74 VQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVS----ALIVA 129
+QPST+Q+ LP V KP++G+ +D I R PY I L +++ +
Sbjct: 118 LQPSTLQLVQYSCSLPMVAKPLYGVLSDVLYIGSGRRVPYIAIGVFLQVLAWGSMGIFQG 177
Query: 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLI 189
LP +A C++ G +I +V DA +A + R +QS S AG ++
Sbjct: 178 AREVLPSLVA--CVLLSNLGASITEVAKDALVAEYGLRYRI--NGLQSYALMASAAGGVL 233
Query: 190 GYSSSGFFVHHLGHQGALGIL-AIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMK 248
G G+ + + + + A+ L+V E+ E +ESV +
Sbjct: 234 GNLLGGYLLLTTPPKISFLVFSALLSLQLVVSLSSKEESFGLPRIAETSSVLESVKKQIS 293
Query: 249 GMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWAT-----DPKAGPAFSQEFVGVIYA 303
+ ++I+ ++ +P ++ +S A+ F + T DP +G+
Sbjct: 294 NLKEAIQADEISQPLIWAVVSIAMVPLLSGSVFCYQTQVLNLDPSV--------IGMSKV 345
Query: 304 LGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 363
+G + + ++Y + LK P R L+ QLLYG+S +LD I + + NL GI + +V+
Sbjct: 346 IGQLMLLCLTVVYDRYLKTLPMRPLIHIIQLLYGLSILLDYILVKQINLGFGISNEVYVL 405
Query: 364 TEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423
++ I+++ + +P V +CP+G EG+ + L L ++S + G + +L+
Sbjct: 406 CFSSLAEILAQFKILPFAVRLASMCPQGCEGSVTSFLASTLCLSQIVSAFLGVGLANLIG 465
Query: 424 VTRTDYRNLWLVILIRNVLRFATLGLIFLVP 454
+T ++Y NL ILI+++ A L + LVP
Sbjct: 466 ITSSNYSNLSSGILIQSLAALAPLCFMHLVP 496
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O22780|FBT9_ARATH Probable folate-biopterin transporter 9, chloroplastic OS=Arabidopsis thaliana GN=At2g33280 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 98/406 (24%), Positives = 185/406 (45%), Gaps = 30/406 (7%)
Query: 65 DYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVL-GLV 123
+++ ++PST+Q+ LP V KP++G+ +D I G R PY + +L GL
Sbjct: 106 NFHMAHCLNLKPSTLQLVQYTASLPMVAKPLYGVLSDVLYIGGARRVPYISVGVLLQGLA 165
Query: 124 SALIVALLGKLPIALALTCLIGITG-GMAIADVVIDACIARNSIETRALAPDMQSLCAFC 182
+ G + +L I ++ G +I +V DA +A + R +QS
Sbjct: 166 WGSLAIFPGAREVLPSLMAFILLSNLGASITEVSQDALVAEYGL--RYQINGLQSYALMA 223
Query: 183 SGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVI-YETRATSHHFEKKKAIE 241
S G ++G G+ + + IL + T L+ L ++ ++ S + + +
Sbjct: 224 SAVGGILGNLLGGYCLLKTPPR----ILFLAFTALLSLQLIVSLSSKEESVNLPRIGEVT 279
Query: 242 SVIFTMKGMCKS--------IKLPQVWKPSLYMFLSFAVSISTHEGQFYWAT-----DPK 288
I ++ G+ K +++ ++ +P +++ S A+ F + T DP
Sbjct: 280 PEISSVLGIVKKQFLDLKGIVQVDEISQPLIWIVSSIALVPLLSGSVFCYQTQVLNLDPS 339
Query: 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFIL 348
+G+ +G + + ++Y + K P R L+ QLLY S + D I +
Sbjct: 340 V--------IGMSKVIGQLMLLCLTVVYDRYWKKLPMRALIHIVQLLYAFSLLFDYILVK 391
Query: 349 RWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGS 408
+ NLA GI ++ FV+ V+ I+++ + +P VL +CP G EG+ + L L S
Sbjct: 392 QINLAFGISNTAFVLCFSSVAEILAQFKILPFSVLLANMCPGGCEGSITSFLASTLCLSS 451
Query: 409 LISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVP 454
++S + G + +++ +T +Y NL ILI+++ L I VP
Sbjct: 452 VVSGFTGVGMANMIGITSKNYSNLPAGILIQSLAALVPLWFIHYVP 497
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIQ7|FBT7_ARATH Probable folate-biopterin transporter 7 OS=Arabidopsis thaliana GN=At1g64890 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 100/435 (22%), Positives = 184/435 (42%), Gaps = 37/435 (8%)
Query: 1 MNSSEKQEVGPASCKRTKFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGL-CQGFSGSF 59
M+SS G + +R P++WL L +G QGF G F
Sbjct: 1 MSSSSDTHAGESRHRR--------NPIRWL----------------LGFGFFVQGFRG-F 35
Query: 60 FKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGV 119
+ +++ + +V PS +Q+ LP V KPI+G+ +D+ G HR PY + +
Sbjct: 36 PWLGANFFLTEQLRVNPSVLQLLQNSANLPMVAKPIYGVVSDSVYFFGQHRIPYIAVGAL 95
Query: 120 LGLVSALIVALLGKLPIA-LALTCLIGITG-GMAIADVVIDACIARNSIE--TRALAPDM 175
L +S L +A L + ++ LAL+ + ++ G ++ +V DA +A + + + + ++
Sbjct: 96 LQAISWLAIAFLSRSNVSILALSIYLLLSNLGASLVEVANDAIVAESGKQKTSETQSGEL 155
Query: 176 QSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHF- 234
S S G ++G G + Q + I L ++ V R S +
Sbjct: 156 PSFVWMVSSLGGILGNLLGGIAIKTFSAQSTFLVFGI---LALLQFLVTINIREKSLNLP 212
Query: 235 EKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFS 294
E + + + ++ P++ ++ +S AV F++ T A
Sbjct: 213 ENPSPAGGIRKHLSDLSHVLRKPEISYSIAWIAVSTAVVPVLTGTMFFYQTKFLKIDA-- 270
Query: 295 QEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLAL 354
+G+ G +A ++ Y++ LK R LL Q+ + DL+F+ L
Sbjct: 271 -SLLGISKVFGQIAMLLWGFAYNRWLKAMRPRKLLTAIQVTIAFFVISDLLFVKGVYRDL 329
Query: 355 GIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWG 414
G+ DS +V+ + + +P VL RLCP G EG+ A +M L ++S +
Sbjct: 330 GVSDSVYVLFFSGFLETLFYFKILPFTVLMARLCPPGCEGSLMAFVMSAIALAFIVSGYL 389
Query: 415 GGIVLHLLHVTRTDY 429
G ++ + VT D+
Sbjct: 390 GIVLASFVGVTEDDF 404
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | ||||||
| 224141981 | 519 | predicted protein [Populus trichocarpa] | 0.979 | 0.928 | 0.709 | 0.0 | |
| 224089380 | 479 | predicted protein [Populus trichocarpa] | 0.949 | 0.974 | 0.727 | 0.0 | |
| 359475893 | 518 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.916 | 0.685 | 0.0 | |
| 356554135 | 523 | PREDICTED: uncharacterized protein LOC10 | 0.949 | 0.892 | 0.645 | 0.0 | |
| 356562137 | 511 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.953 | 0.618 | 0.0 | |
| 297811191 | 502 | integral membrane transporter family pro | 0.932 | 0.914 | 0.671 | 1e-177 | |
| 15238279 | 503 | major facilitator protein [Arabidopsis t | 0.975 | 0.954 | 0.645 | 1e-176 | |
| 414885518 | 507 | TPA: hypothetical protein ZEAMMB73_22641 | 0.977 | 0.948 | 0.588 | 1e-168 | |
| 449493405 | 499 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.961 | 0.947 | 0.616 | 1e-167 | |
| 449442144 | 487 | PREDICTED: probable folate-biopterin tra | 0.936 | 0.946 | 0.614 | 1e-165 |
| >gi|224141981|ref|XP_002324339.1| predicted protein [Populus trichocarpa] gi|222865773|gb|EEF02904.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/492 (70%), Positives = 413/492 (83%), Gaps = 10/492 (2%)
Query: 1 MNSSEKQEVGPASCKRTKFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFF 60
++ ++ +C R LS+ +EP QWLQMLSSQL+ +FIFG+V+VYGL QGFSGSFF
Sbjct: 24 ISEQDQGRQSSETCARASPLSIFMEPFQWLQMLSSQLNPTFIFGVVVVYGLSQGFSGSFF 83
Query: 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVL 120
KVVTD+YWKDVQKVQPS VQ+YIGLYY+PWVMKPIWG+ TD FP++GY RRPYF++AGVL
Sbjct: 84 KVVTDFYWKDVQKVQPSAVQLYIGLYYIPWVMKPIWGLLTDVFPVRGYKRRPYFLVAGVL 143
Query: 121 GLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCA 180
G VSAL+VA LGK+PIA+AL+CLIGIT G+AIADV IDACIA+NSIE R+LAPDMQSLC
Sbjct: 144 GCVSALMVATLGKVPIAVALSCLIGITAGVAIADVTIDACIAKNSIEIRSLAPDMQSLCG 203
Query: 181 FCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAI 240
CS G+LIGYSSSGFF +L +LA+PPT+LIVLGFVIYE R+T+ EKKK +
Sbjct: 204 ICSSLGALIGYSSSGFF-------ASLVLLAVPPTILIVLGFVIYEVRSTTLQSEKKKDL 256
Query: 241 ESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGV 300
+ ++GM K+IKLPQVWKPSLYM+LS A+SISTHEGQFYW T PKAGPAFSQEFVG+
Sbjct: 257 Q---IALRGMSKTIKLPQVWKPSLYMYLSLALSISTHEGQFYWYTYPKAGPAFSQEFVGM 313
Query: 301 IYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSF 360
IYA+GA+ASI GVLIY KTLKDYP+R+LL +AQLLYG++GMLD+IF LRWNL +GIPD F
Sbjct: 314 IYAVGALASIAGVLIYQKTLKDYPFRSLLLYAQLLYGMTGMLDVIFFLRWNLVIGIPDYF 373
Query: 361 FVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420
FVI E+CVS I+SR+RWIPMIVLSTRLCP GIEGTFFALLMCID LGSL SKWGGGIVLH
Sbjct: 374 FVIMEECVSRIISRIRWIPMIVLSTRLCPLGIEGTFFALLMCIDSLGSLSSKWGGGIVLH 433
Query: 421 LLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDTITDDEG 480
L HVTRTD+ NLWL ILIRN LRFAT+GLIFLVPKG+ ++LIP D+L NSD DD+G
Sbjct: 434 LFHVTRTDFTNLWLAILIRNFLRFATIGLIFLVPKGDQEDDLIPPDILTANSDASLDDDG 493
Query: 481 MRLLSINETNED 492
+ L + ET+E+
Sbjct: 494 LELAPVKETSEE 505
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089380|ref|XP_002308712.1| predicted protein [Populus trichocarpa] gi|222854688|gb|EEE92235.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/473 (72%), Positives = 406/473 (85%), Gaps = 6/473 (1%)
Query: 24 LEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYI 83
+EP QWLQMLSSQL+ +FIFG+V+VYG QG SGSFFKVVTDYYWKDVQKVQPS VQ+Y+
Sbjct: 1 MEPFQWLQMLSSQLNPTFIFGVVVVYGFSQGLSGSFFKVVTDYYWKDVQKVQPSAVQLYM 60
Query: 84 GLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCL 143
GLYY+PWVMKPIWG+FTD FP++GY RRPYF++AGVLG VSAL++ALLGK+PIA+AL+CL
Sbjct: 61 GLYYIPWVMKPIWGLFTDVFPVRGYKRRPYFIVAGVLGCVSALMIALLGKVPIAVALSCL 120
Query: 144 IGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGH 203
IGIT G+AIADV IDACIA+NSIE RALAPDMQSLC FCS G+LIGYSSSGFFVHHLG
Sbjct: 121 IGITAGVAIADVTIDACIAKNSIEIRALAPDMQSLCGFCSSLGALIGYSSSGFFVHHLGP 180
Query: 204 QGALGI----LAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQV 259
Q L + LA+PP LLIVLGFVIYE R+T +A+E + ++GM K+IKLPQV
Sbjct: 181 QAGLYVSLVLLAVPPALLIVLGFVIYEVRST--KIICLQAVEGLQIALRGMSKTIKLPQV 238
Query: 260 WKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKT 319
WKPSLYM+LS A+SISTHEG FYW TDPKAGPAFSQEFVG+IYA+GA+ASI GVLIY K
Sbjct: 239 WKPSLYMYLSLALSISTHEGHFYWYTDPKAGPAFSQEFVGIIYAVGALASIAGVLIYQKA 298
Query: 320 LKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIP 379
LK+ P+R+L+ +AQLLYG+SGMLDL F+LRWNLALGIPD FFVI E+CV+ I+SR+RW+P
Sbjct: 299 LKNCPFRSLILYAQLLYGMSGMLDLTFVLRWNLALGIPDYFFVIAEECVTRIISRIRWMP 358
Query: 380 MIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIR 439
MIVLSTRLCP GIEGTFFALLMCID LG+L SKWGGG++LHL HVTRTD+ NLWLVILIR
Sbjct: 359 MIVLSTRLCPLGIEGTFFALLMCIDSLGALSSKWGGGVLLHLFHVTRTDFTNLWLVILIR 418
Query: 440 NVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDTITDDEGMRLLSINETNED 492
N LRFATLGLIFLVP+G+ ++ LIP D+L NS DD+G+ L+ + ET+E+
Sbjct: 419 NFLRFATLGLIFLVPRGDQADSLIPSDVLTANSAASLDDDGLELVPVKETSEE 471
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475893|ref|XP_002283360.2| PREDICTED: uncharacterized protein LOC100244119 [Vitis vinifera] gi|296082148|emb|CBI21153.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/477 (68%), Positives = 393/477 (82%), Gaps = 2/477 (0%)
Query: 16 RTKFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQ 75
+T +L+++P QWLQML QL+ +FI GI LVYGL QGFS SFFKVVTD+YWKDVQKVQ
Sbjct: 42 KTTPFTLLIQPFQWLQMLCKQLNPTFILGIALVYGLSQGFSNSFFKVVTDFYWKDVQKVQ 101
Query: 76 PSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLP 135
PS VQ+YIG YY+PW+MKP+WG+ TD FP+ GY RRPYFV AGV+G VSA +VA+ G LP
Sbjct: 102 PSVVQLYIGFYYIPWIMKPVWGLLTDVFPVMGYRRRPYFVAAGVIGTVSAAVVAISGNLP 161
Query: 136 IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSG 195
+A+AL CLIGIT G+AIADV IDACIARNSIE R+LA DMQS FCS AG+L+GYSSSG
Sbjct: 162 VAVALGCLIGITAGVAIADVTIDACIARNSIEIRSLAADMQSFSGFCSSAGALLGYSSSG 221
Query: 196 FFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATS-HHFEKKKAIESVIFTMKGMCKSI 254
FFVHHLG QGALGIL PP +L+VLGFVIYE+RA + K+KA+E V ++ M ++I
Sbjct: 222 FFVHHLGAQGALGILVGPPAMLVVLGFVIYESRAPNLASNNKRKAMEKVDIAIRDMYRTI 281
Query: 255 KLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVL 314
+ PQVWKPSLYM+LS A+SISTHEGQFYW TDPKAGPAFSQEFVG+IYA+GA+ASI+G+L
Sbjct: 282 RCPQVWKPSLYMYLSLALSISTHEGQFYWYTDPKAGPAFSQEFVGMIYAVGALASILGIL 341
Query: 315 IYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSR 374
IYHKTLKD P+R LLFFAQL+Y ISG+LD+IFILRWNLALG+PD FV+ E+C+S +V+R
Sbjct: 342 IYHKTLKDCPFRTLLFFAQLIYAISGILDVIFILRWNLALGVPDYLFVVMEECISRVVAR 401
Query: 375 LRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWL 434
+RW+PMI+LST+LCP GIEGTFFALLMCID LGSL SKW GG+VLHLLHVTR+D+ NLWL
Sbjct: 402 VRWMPMIILSTKLCPLGIEGTFFALLMCIDSLGSLSSKWAGGMVLHLLHVTRSDFTNLWL 461
Query: 435 VILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDTITDDEGMRLLSINETNE 491
V+LIRN+LR ATLGLIFLVP S+E+I D L S +D+ + +NE E
Sbjct: 462 VVLIRNILRLATLGLIFLVPNVGQSDEVISSDFLNDTSSVSEEDDEFQ-TCLNENIE 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554135|ref|XP_003545404.1| PREDICTED: uncharacterized protein LOC100806186 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/468 (64%), Positives = 386/468 (82%), Gaps = 1/468 (0%)
Query: 25 EPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIG 84
EP QW+Q LSSQL+ +F+ G+ L+YG+ QGFSGS FKVV DYYWKDVQK+QP TVQ+Y+G
Sbjct: 55 EPFQWIQKLSSQLNPTFVIGVFLIYGIGQGFSGSLFKVVADYYWKDVQKIQPFTVQLYVG 114
Query: 85 LYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLI 144
Y++PWV+KP+WGI TDAFP++GY RRPYF+I+GV+G VSA ++A G L AL C +
Sbjct: 115 FYFIPWVLKPLWGILTDAFPVRGYRRRPYFIISGVIGAVSAAVIAFAGNLAAVAALMCFV 174
Query: 145 GITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQ 204
G++ +AIADV IDACIARNSIE R LAPD+QSLC FCSGAG+L+GY +SGFFVH LG Q
Sbjct: 175 GVSASLAIADVTIDACIARNSIEVRELAPDLQSLCGFCSGAGALVGYLASGFFVHRLGPQ 234
Query: 205 GALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSL 264
+LG++A+ P L IVLGFVIYE R + H EKK+A+ESV ++ M +++ P VWKPSL
Sbjct: 235 ESLGLMALSPALTIVLGFVIYENRTSGSHIEKKQAVESVGMKIRSMYQTMLYPHVWKPSL 294
Query: 265 YMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYP 324
YMFL+ A++++THEG FYW TDPKAGPAFSQEFVGVIYA+GAVAS+IGVLIYHK LKDYP
Sbjct: 295 YMFLALALNVTTHEGHFYWYTDPKAGPAFSQEFVGVIYAIGAVASLIGVLIYHKALKDYP 354
Query: 325 YRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLS 384
+R+L+F+AQLLYGISG+LDLIFILRWNL +GIPD FFV+ E+ + I S++RW+PM+VLS
Sbjct: 355 FRDLVFYAQLLYGISGVLDLIFILRWNLVIGIPDYFFVVIEESATRITSKIRWMPMMVLS 414
Query: 385 TRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRF 444
T+LCP GIEGTFFALLMCID +G+L+S+WGGG++L +LH+TRTD+ NLWL +LIR++LRF
Sbjct: 415 TQLCPLGIEGTFFALLMCIDSIGALLSRWGGGVLLRVLHITRTDFTNLWLAVLIRDMLRF 474
Query: 445 ATLGLIFLVPKGNHSNELIPMDLLRKN-SDTITDDEGMRLLSINETNE 491
ATL L+FLVPK + EL+P ++ KN SD + ++E + L+ IN E
Sbjct: 475 ATLALVFLVPKTDQYEELLPFEVSGKNTSDKVDEEETLELVPINGKTE 522
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562137|ref|XP_003549330.1| PREDICTED: uncharacterized protein LOC100794191 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/490 (61%), Positives = 395/490 (80%), Gaps = 3/490 (0%)
Query: 5 EKQEVGPASCKRTK-FLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVV 63
E + +G K K LSL+ EP+QW+Q LSSQL+ +F+ G+ ++YG+ QGFSGS FKVV
Sbjct: 21 ETEPMGENDNKTKKNLLSLLTEPIQWIQSLSSQLNPTFVIGVFIIYGIGQGFSGSLFKVV 80
Query: 64 TDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLV 123
+DYYWKDVQK+QPSTVQ+Y+G Y++PWV+KP+WGI TDAFP++GY RRPYF+I+GV+G +
Sbjct: 81 SDYYWKDVQKIQPSTVQLYVGFYFIPWVLKPLWGILTDAFPVRGYRRRPYFIISGVIGAI 140
Query: 124 SALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCS 183
SA +VA G L AL C +G++ +AIADV IDACIARNSIE R LAPD+QSLC FCS
Sbjct: 141 SAAVVAFAGNLAAVAALMCFLGVSASLAIADVTIDACIARNSIEMRKLAPDLQSLCGFCS 200
Query: 184 GAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKK-KAIES 242
GAG+L+GY +SGFFVH LG Q +LG++A+ P L IVLGFVIYE R ++ H EK+ + + S
Sbjct: 201 GAGALVGYLASGFFVHRLGTQESLGLMALSPALTIVLGFVIYENRTSASHIEKQVRKLFS 260
Query: 243 VIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIY 302
V ++ M +++ P VWKPSLYMFL+ ++++THEG FYW TDPKAGPAFSQEFVGVIY
Sbjct: 261 VGMKIRSMYQTMLYPHVWKPSLYMFLALTLNVTTHEGHFYWYTDPKAGPAFSQEFVGVIY 320
Query: 303 ALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFV 362
A+GAVAS+IGVLIYHK LKDY +R+L+F+AQLLYGISG+LDLIFILRWNL +GIPD FFV
Sbjct: 321 AIGAVASLIGVLIYHKALKDYQFRDLVFYAQLLYGISGVLDLIFILRWNLVIGIPDYFFV 380
Query: 363 ITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLL 422
+ E+ + I S++RW+PM+VLST+LCP GIEGTFFALLMCID +G+L SKWGGG++L +L
Sbjct: 381 VLEESATRITSKIRWMPMMVLSTQLCPLGIEGTFFALLMCIDSIGALFSKWGGGMLLRVL 440
Query: 423 HVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKN-SDTITDDEGM 481
H+TRTD+ NLWL +LIR++LRFATL L+FLVPK + EL+P ++ KN S+ + ++E +
Sbjct: 441 HITRTDFTNLWLAVLIRDMLRFATLALVFLVPKTDQYEELLPSEVSGKNTSEKVHEEETL 500
Query: 482 RLLSINETNE 491
L+ I+ E
Sbjct: 501 ELVPIHGKTE 510
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811191|ref|XP_002873479.1| integral membrane transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297319316|gb|EFH49738.1| integral membrane transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 309/460 (67%), Positives = 379/460 (82%), Gaps = 1/460 (0%)
Query: 14 CKRTKFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQK 73
+R +S++L+P QWLQMLSS+L+ SF+ G+VLVYG+ QGFSGS FKVVTDYYWKDVQ+
Sbjct: 30 ARRNAVVSVLLQPFQWLQMLSSRLNLSFVLGVVLVYGVNQGFSGSIFKVVTDYYWKDVQQ 89
Query: 74 VQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGK 133
VQPS VQ+Y+GLYY+PWVM+PIWG+FTD FPIKGY R+PYFV++GVLGLVSA+ +A+LGK
Sbjct: 90 VQPSVVQLYMGLYYIPWVMRPIWGLFTDVFPIKGYKRKPYFVVSGVLGLVSAIAIAVLGK 149
Query: 134 LPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSS 193
LP ALAL+CL+G++ MAIADVVIDACIA NSI R+LAPD+QSLC CS AG+L+GY++
Sbjct: 150 LPAALALSCLLGVSAAMAIADVVIDACIATNSINIRSLAPDIQSLCMVCSSAGALVGYAT 209
Query: 194 SGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEK-KKAIESVIFTMKGMCK 252
SG FVH LG QGALG+LA P +++LGF IYE R+++ +K KK + + +KGMCK
Sbjct: 210 SGVFVHRLGPQGALGVLAFSPATIVILGFFIYEKRSSTVPIQKNKKDTDGLGVAVKGMCK 269
Query: 253 SIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIG 312
+IK P+VWKPSLYMF+S A++ISTHEG FYW TDP AGPAFSQEFVG+IYA+GA+AS+ G
Sbjct: 270 TIKYPEVWKPSLYMFISLALNISTHEGHFYWYTDPTAGPAFSQEFVGIIYAIGALASMFG 329
Query: 313 VLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIV 372
VLIYHK LK Y +RN+LFFAQLLY SGMLDL+FI RWNL LGIPDS FVITE+ V+ I+
Sbjct: 330 VLIYHKKLKGYSFRNILFFAQLLYVFSGMLDLVFIKRWNLTLGIPDSLFVITEESVTKII 389
Query: 373 SRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNL 432
S++RWIPM+VLSTRLCP GIEGTFFA LMCID G L SKWGGG LH VTR D+ NL
Sbjct: 390 SKIRWIPMVVLSTRLCPLGIEGTFFAFLMCIDSFGQLASKWGGGFALHAFGVTRHDFGNL 449
Query: 433 WLVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNS 472
WLVILIRN+LR T+ +FLVP +H ++L+P D+L K
Sbjct: 450 WLVILIRNLLRLVTVCFVFLVPDSDHLDDLVPSDVLPKKQ 489
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238279|ref|NP_196643.1| major facilitator protein [Arabidopsis thaliana] gi|75173996|sp|Q9LEV7.1|FBT6_ARATH RecName: Full=Probable folate-biopterin transporter 6 gi|8979716|emb|CAB96837.1| putative protein [Arabidopsis thaliana] gi|332004217|gb|AED91600.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 311/482 (64%), Positives = 389/482 (80%), Gaps = 2/482 (0%)
Query: 4 SEKQEVGPASCKRTKFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVV 63
S+ E+ +R +S++++P QWLQMLSS+L+ SF+ G+VLVYG+ QGFSGS FKVV
Sbjct: 21 SDHSEI-KTKARRNAVVSVLIQPFQWLQMLSSRLNLSFVLGVVLVYGVNQGFSGSIFKVV 79
Query: 64 TDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLV 123
TDYYWKDVQ+VQPS VQ+Y+GLYY+PWVM+PIWG+FTD FPIKGY R+PYFV++GVLGLV
Sbjct: 80 TDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDVFPIKGYKRKPYFVVSGVLGLV 139
Query: 124 SALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCS 183
SA+ + +LGKLP ALAL+CL+G++ MAIADVVIDACIA NSI R+LAPD+QSLC CS
Sbjct: 140 SAIAIVVLGKLPAALALSCLLGVSAAMAIADVVIDACIATNSINIRSLAPDIQSLCMVCS 199
Query: 184 GAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEK-KKAIES 242
AG+L+GY++SG FVH LG QGALG+LA P +++LGF IYE R+++ +K KK +
Sbjct: 200 SAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGFFIYEKRSSTVPTQKTKKDTDG 259
Query: 243 VIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIY 302
+ +KGMCK++K P+VWKPSLYMF+S A++ISTHEG FYW TDP AGPAFSQEFVG+IY
Sbjct: 260 LGVAVKGMCKTVKYPEVWKPSLYMFISLALNISTHEGHFYWYTDPTAGPAFSQEFVGIIY 319
Query: 303 ALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFV 362
A+GA+AS+ GVLIYHK LK Y +RN+LFFAQLLY SGMLDL+FI RWNL LGIPDS FV
Sbjct: 320 AVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGMLDLVFIKRWNLTLGIPDSLFV 379
Query: 363 ITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLL 422
ITE+ + ++S++RWIPM+VLSTRLCP GIEGTFFA LMCID G L SKWGGG VLH
Sbjct: 380 ITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLMCIDSFGQLASKWGGGFVLHAF 439
Query: 423 HVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDTITDDEGMR 482
VTR D+ NLWLVILIRN+LR T+ +FLVP +H ++L+P D+L K DD+ ++
Sbjct: 440 GVTRHDFGNLWLVILIRNILRLVTVCFVFLVPDSDHLDDLVPSDVLPKKQSEDDDDDDIK 499
Query: 483 LL 484
LL
Sbjct: 500 LL 501
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414885518|tpg|DAA61532.1| TPA: hypothetical protein ZEAMMB73_226414 [Zea mays] gi|414885519|tpg|DAA61533.1| TPA: hypothetical protein ZEAMMB73_226414 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 285/484 (58%), Positives = 373/484 (77%), Gaps = 3/484 (0%)
Query: 1 MNSSEKQEVGPASCKRTKFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFF 60
+ + V P+ +R + + VLEPV+W++ML +L ++F+ G+VLVYGL QGF+GSFF
Sbjct: 14 VGQDPRSGVRPSGGER-DWAAAVLEPVRWMRMLCRELGATFVAGVVLVYGLSQGFAGSFF 72
Query: 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVL 120
+V +DYYWKDVQ+VQP+TVQ +++PWV+KP+WGI TD FPI GY RRPYF+ +G+L
Sbjct: 73 RVASDYYWKDVQRVQPATVQFLSVFFFIPWVLKPLWGIMTDVFPICGYRRRPYFLFSGIL 132
Query: 121 GLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCA 180
G VSA IVA+ LP++ A+ CL+GI+ +AIADV IDA IA+NSI+ ALAPDMQSLCA
Sbjct: 133 GTVSAAIVAVTIGLPMSSAVLCLMGISTAVAIADVTIDASIAKNSIDKPALAPDMQSLCA 192
Query: 181 FCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAI 240
F S G+L+GY++SG FVHHLG QGALG++AIPP ++ LGF IYE + T H K+K +
Sbjct: 193 FSSSLGALVGYATSGLFVHHLGAQGALGVMAIPPATVVFLGFFIYELK-THQHNVKEKVL 251
Query: 241 ESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPK-AGPAFSQEFVG 299
V +KGM ++I+ P VW+PSLYMFLS A+SISTHEGQFYW T+ P FSQEFVG
Sbjct: 252 NKVGGAVKGMVRTIRYPVVWRPSLYMFLSLALSISTHEGQFYWYTNKTPPNPGFSQEFVG 311
Query: 300 VIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDS 359
+++A+GAVAS++GVL+YHK LKDYP+R++L +AQLLYG+SG+LDL F+LRWNLALGIPD+
Sbjct: 312 LVHAIGAVASMLGVLVYHKCLKDYPFRSILLYAQLLYGVSGLLDLTFVLRWNLALGIPDA 371
Query: 360 FFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVL 419
FV E+CVS +V+R+R +PM+VLST+LCP G+EGTFFALLMCID LG L +K GG VL
Sbjct: 372 AFVTLEECVSRVVARVRLMPMMVLSTKLCPPGMEGTFFALLMCIDSLGMLAAKAGGAAVL 431
Query: 420 HLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDTITDDE 479
L VTRTD+ +LWL +L+RNVLR ATLG I LVP ++ L+P +LL + + DDE
Sbjct: 432 RALRVTRTDFGHLWLAVLLRNVLRLATLGAIGLVPTAGQTDVLVPRELLVSSPAGVADDE 491
Query: 480 GMRL 483
RL
Sbjct: 492 EERL 495
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449493405|ref|XP_004159279.1| PREDICTED: LOW QUALITY PROTEIN: probable folate-biopterin transporter 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 296/480 (61%), Positives = 375/480 (78%), Gaps = 7/480 (1%)
Query: 18 KFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPS 77
K S++L+P +WL+MLS++LH SFI G++L+YGL GFSGS+FKVV+DYYWKDVQK+QPS
Sbjct: 22 KLFSIMLQPFRWLKMLSTELHPSFIAGVILIYGLSHGFSGSYFKVVSDYYWKDVQKLQPS 81
Query: 78 TVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIA 137
VQIYIG+Y +PWVMKPIWG+ TDAFP++GY RRPYFVI+GV+G +A+ +A+ G L +
Sbjct: 82 VVQIYIGIYTIPWVMKPIWGLLTDAFPVRGYLRRPYFVISGVVGATAAVGMAVKGGLGVL 141
Query: 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFF 197
AL LIGI+G MAIADV IDACI RNSIE + LA D+QSLC CS G LIGYS+SGFF
Sbjct: 142 EALGLLIGISGAMAIADVTIDACIVRNSIEVQWLAQDLQSLCGACSSIGHLIGYSTSGFF 201
Query: 198 VHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKK---AIESVIFTMKGMCKSI 254
VH LG Q ALGILAIPP L+++LGF I+ET + + + K +I+ V ++ CK+I
Sbjct: 202 VHLLGAQEALGILAIPPALVVLLGFFIHETPSPTLQYNGKSKGGSIKQVGVAIRDTCKAI 261
Query: 255 KLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVL 314
K P VW+PSL MFL ++SISTHEGQFYW TD KAGPAFSQE VG+IYA+G+ AS+IGVL
Sbjct: 262 KYPHVWRPSLXMFLCLSLSISTHEGQFYWYTDKKAGPAFSQESVGLIYAVGSAASLIGVL 321
Query: 315 IYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSR 374
IYHKTL+D +R +LFFAQL YG++G LD+IF+LRWNLAL IPD FV+ E+CV+ IV+R
Sbjct: 322 IYHKTLRDLKFRRILFFAQLFYGVAGFLDVIFVLRWNLALRIPDELFVVIEECVTRIVTR 381
Query: 375 LRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWL 434
+RW PM+VL+TRLC GIEGTFFALL CID LG+L SKW GG+VLH VTR+D+RNLWL
Sbjct: 382 IRWTPMMVLNTRLCSVGIEGTFFALLACIDSLGTLCSKWSGGLVLHAFGVTRSDFRNLWL 441
Query: 435 VILIRNVLRFATLGLIFLVPKGNHSNELIPMD--LLRKNSDTITDDEGMRLLSINETNED 492
V+L+R VLRF +G +FLVP N ++ LIP D ++RK+S D + + L+S+ D
Sbjct: 442 VVLLRTVLRFVVVGFVFLVPDANQTDILIPGDHTMVRKSSS--EDGDNIPLVSMKSEGRD 499
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442144|ref|XP_004138842.1| PREDICTED: probable folate-biopterin transporter 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 293/477 (61%), Positives = 369/477 (77%), Gaps = 16/477 (3%)
Query: 18 KFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPS 77
K S++L+P +WL+MLS++LH SFI G++L+YGL GFSGS+FKVV+DYYWKDVQK+QPS
Sbjct: 25 KLFSIMLQPFRWLKMLSTELHPSFIAGVILIYGLSHGFSGSYFKVVSDYYWKDVQKLQPS 84
Query: 78 TVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIA 137
VQIYIG+Y +PWVMKPIWG+ TDAFP++GY RRPYFVI+GV+G +A+ +A+ G L +
Sbjct: 85 VVQIYIGIYTIPWVMKPIWGLLTDAFPVRGYLRRPYFVISGVVGATAAVGMAVKGGLGVL 144
Query: 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFF 197
AL LIGI+G MAIADV IDACI RNSIE + LA D+QSLC CS G LIGYS+SGFF
Sbjct: 145 EALGLLIGISGAMAIADVTIDACIVRNSIEVQWLAQDLQSLCGACSSIGHLIGYSTSGFF 204
Query: 198 VHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLP 257
VH LG Q ALGILAIPP L+++LGF I +I+ V ++ CK+IK P
Sbjct: 205 VHLLGAQEALGILAIPPALVVLLGFFI------------GGSIKQVGVAIRDTCKAIKYP 252
Query: 258 QVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYH 317
VW+PSL+MFL ++SISTHEGQFYW TD KAGPAFSQE VG+IYA+G+ AS+IGVLIYH
Sbjct: 253 HVWRPSLFMFLCLSLSISTHEGQFYWYTDKKAGPAFSQESVGLIYAVGSAASLIGVLIYH 312
Query: 318 KTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRW 377
KTL+D +R +LFFAQL YG++G LD+IF+LRWNLAL IPD FV+ E+CV+ IV+R+RW
Sbjct: 313 KTLRDLKFRRILFFAQLFYGVAGFLDVIFVLRWNLALRIPDELFVVIEECVTRIVTRIRW 372
Query: 378 IPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVIL 437
PM+VL+TRLC GIEGTFFALL CID LG+L SKW GG+VLH VTR+D+RNLWLV+L
Sbjct: 373 TPMMVLNTRLCSVGIEGTFFALLACIDSLGTLCSKWSGGLVLHAFGVTRSDFRNLWLVVL 432
Query: 438 IRNVLRFATLGLIFLVPKGNHSNELIPMD--LLRKNSDTITDDEGMRLLSINETNED 492
+R VLRF +G +FLVP N ++ LIP D ++RK+S D + + L+S+ D
Sbjct: 433 LRTVLRFVVVGFVFLVPDANQTDILIPGDHTMVRKSSS--EDGDNIPLVSMKSEGRD 487
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 492 | ||||||
| TAIR|locus:2183810 | 503 | AT5G10820 "AT5G10820" [Arabido | 0.975 | 0.954 | 0.620 | 2.8e-169 | |
| TAIR|locus:2017814 | 497 | AT1G79710 "AT1G79710" [Arabido | 0.955 | 0.945 | 0.454 | 1.5e-120 | |
| TAIR|locus:2179285 | 499 | AT5G25050 "AT5G25050" [Arabido | 0.951 | 0.937 | 0.458 | 4.9e-117 | |
| TAIR|locus:2045462 | 560 | AT2G32040 "AT2G32040" [Arabido | 0.821 | 0.721 | 0.292 | 3.1e-44 | |
| UNIPROTKB|Q55721 | 494 | slr0642 "Folate-biopterin tran | 0.865 | 0.862 | 0.275 | 1.9e-42 | |
| TAIR|locus:2160150 | 491 | AT5G54860 "AT5G54860" [Arabido | 0.414 | 0.415 | 0.275 | 7.9e-39 | |
| GENEDB_PFALCIPARUM|PF11_0172 | 455 | PF11_0172 "folate/biopterin tr | 0.847 | 0.916 | 0.246 | 1.3e-27 | |
| UNIPROTKB|Q8IIK1 | 455 | PF11_0172 "Folate/biopterin tr | 0.847 | 0.916 | 0.246 | 1.3e-27 | |
| GENEDB_PFALCIPARUM|MAL8P1.13 | 505 | MAL8P1.13 "integral membrane p | 0.794 | 0.774 | 0.231 | 3.6e-25 | |
| UNIPROTKB|Q8IBB7 | 505 | MAL8P1.13 "Folate/biopterin tr | 0.794 | 0.774 | 0.231 | 3.6e-25 |
| TAIR|locus:2183810 AT5G10820 "AT5G10820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1646 (584.5 bits), Expect = 2.8e-169, P = 2.8e-169
Identities = 299/482 (62%), Positives = 377/482 (78%)
Query: 4 SEKQEVGPASCKRTKFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVV 63
S+ E+ +R +S++++P QWLQMLSS+L+ SF+ G+VLVYG+ QGFSGS FKVV
Sbjct: 21 SDHSEI-KTKARRNAVVSVLIQPFQWLQMLSSRLNLSFVLGVVLVYGVNQGFSGSIFKVV 79
Query: 64 TDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLV 123
TDYYWKDVQ+VQPS VQ+Y+GLYY+PWVM+PIWG+FTD FPIKGY R+PYFV++GVLGLV
Sbjct: 80 TDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDVFPIKGYKRKPYFVVSGVLGLV 139
Query: 124 SALIVALLGKLPIALALTCLIGITGGMXXXXXXXXXXXXRNSIETRALAPDMQSLCAFCS 183
SA+ + +LGKLP ALAL+CL+G++ M NSI R+LAPD+QSLC CS
Sbjct: 140 SAIAIVVLGKLPAALALSCLLGVSAAMAIADVVIDACIATNSINIRSLAPDIQSLCMVCS 199
Query: 184 GAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEK-KKAIES 242
AG+L+GY++SG FVH LG QGALG+LA P +++LGF IYE R+++ +K KK +
Sbjct: 200 SAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGFFIYEKRSSTVPTQKTKKDTDG 259
Query: 243 VIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIY 302
+ +KGMCK++K P+VWKPSLYMF+S A++ISTHEG FYW TDP AGPAFSQEFVG+IY
Sbjct: 260 LGVAVKGMCKTVKYPEVWKPSLYMFISLALNISTHEGHFYWYTDPTAGPAFSQEFVGIIY 319
Query: 303 ALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFV 362
A+GA+AS+ GVLIYHK LK Y +RN+LFFAQLLY SGMLDL+FI RWNL LGIPDS FV
Sbjct: 320 AVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGMLDLVFIKRWNLTLGIPDSLFV 379
Query: 363 ITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLL 422
ITE+ + ++S++RWIPM+VLSTRLCP GIEGTFFA LMCID G L SKWGGG VLH
Sbjct: 380 ITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLMCIDSFGQLASKWGGGFVLHAF 439
Query: 423 HVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDTITDDEGMR 482
VTR D+ NLWLVILIRN+LR T+ +FLVP +H ++L+P D+L K DD+ ++
Sbjct: 440 GVTRHDFGNLWLVILIRNILRLVTVCFVFLVPDSDHLDDLVPSDVLPKKQSEDDDDDDIK 499
Query: 483 LL 484
LL
Sbjct: 500 LL 501
|
|
| TAIR|locus:2017814 AT1G79710 "AT1G79710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
Identities = 215/473 (45%), Positives = 322/473 (68%)
Query: 15 KRTKFLSLVLE-PVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQK 73
K+ L LVL+ P++WL+ML +LH SF FG+++VYG+ QG KV T YY+KD QK
Sbjct: 22 KKEGVLDLVLKRPLRWLRMLIEELHWSFFFGVIIVYGVSQGLGKGLSKVSTQYYFKDEQK 81
Query: 74 VQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGK 133
+QPS QIY+GL +PW++KP+WG+ TD P+ GY RRPYF++AG L ++S +++ L
Sbjct: 82 IQPSQAQIYVGLIQIPWIIKPLWGLLTDVVPVLGYRRRPYFILAGFLAMISMMVLWLHTN 141
Query: 134 LPIALALTCLIGITGGMXXXXXXXXXXXXRNSIETRALAPDMQSLCAFCSGAGSLIGYSS 193
L +ALAL+CL+ + G+ + SI LA DMQSLC CS GSL+G+S
Sbjct: 142 LHLALALSCLVAGSAGVAIADVTIDACVTQCSISHPTLAADMQSLCGLCSSIGSLVGFSL 201
Query: 194 SGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKS 253
SG VH +G +G G+L + LL+V+G V+ E+ + S +K + + + K+
Sbjct: 202 SGVLVHLVGSKGVYGLLGVTAGLLVVVGMVLKESPSRS--LGRKHVNDKFLDAGSAIWKT 259
Query: 254 IKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGV 313
+ +VW+P L+M LS AVS+ HEG FYW TD K GP+FS+E VG I + GA+ S++G+
Sbjct: 260 FQYGEVWRPCLFMLLSAAVSLHIHEGMFYWYTDSKDGPSFSKEAVGSIMSFGAIGSLVGI 319
Query: 314 LIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVS 373
L+Y LK++P+RN++F+A L +SG LDLI +LR NL LG+PD FF++ ++ VSH++S
Sbjct: 320 LLYQNFLKNFPFRNVVFWALSLSVLSGFLDLILVLRINLKLGLPDYFFIVVDEFVSHMIS 379
Query: 374 RLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLW 433
R++W+P++VLS++LCP G+EGTFFALLM I+ +G L+S WGGG++LH L VTRT + NLW
Sbjct: 380 RIKWLPLLVLSSKLCPAGMEGTFFALLMSIEHIGHLVSSWGGGVLLHALKVTRTQFDNLW 439
Query: 434 LVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDTITDDEGMRLLSI 486
LVI+IR++LR +GL+FL+P + ++ ++P ++L D E + + ++
Sbjct: 440 LVIVIRSLLRVIPIGLVFLIPNVDSNSTILPAEMLTSRISEGVDTEKIEMTAL 492
|
|
| TAIR|locus:2179285 AT5G25050 "AT5G25050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
Identities = 216/471 (45%), Positives = 310/471 (65%)
Query: 17 TKFLSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQP 76
+ F ++V PV+WL+MLSS+LH SF+FG+V +YG+ QG GS +V T+YY KDVQKVQP
Sbjct: 21 SNFRNVVCGPVRWLKMLSSELHWSFVFGVVSLYGINQGLGGSLGRVATEYYMKDVQKVQP 80
Query: 77 STVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPI 136
S Q + +PW++KP+WGI TD PI G+HRRPYF++AGVLG+VS L ++L L +
Sbjct: 81 SESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRPYFILAGVLGVVSLLFISLHSNLHL 140
Query: 137 ALALTCLIGITGGMXXXXXXXXXXXXRNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGF 196
LAL + + M NSI+ +LA DMQSLC+ S G+L+G+ SG
Sbjct: 141 YLALFWMTISSAAMAIADVTIDACTAYNSIKHPSLASDMQSLCSLSSSIGALLGFFMSGI 200
Query: 197 FVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKL 256
VH +G +G G+L P L+ V+G V E F K+ + K M +++K
Sbjct: 201 LVHLVGSKGVFGLLTFPFALVSVVGIVFSEPHVPG--FSYKQVNQKFTDAGKAMWRTMKC 258
Query: 257 PQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIY 316
VW+PSLYM++S + ++ HEG FYW TD K GP F+QE VG I ++G++ SI+ +Y
Sbjct: 259 SDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKDGPLFAQETVGFILSIGSIGSILAATLY 318
Query: 317 HKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLR 376
LKD+P+R L + QLL+ +SGMLDLI + R NL G+PD F++ ++ VS ++ RL+
Sbjct: 319 QLVLKDHPFRGLCLWTQLLFALSGMLDLILVFRLNLKFGLPDYLFIVVDEIVSQMIGRLK 378
Query: 377 WIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVI 436
W+P++VL+++LCP GIEGTFFALLM ID G + S W GGI+LH+L VTRT++ NLWL +
Sbjct: 379 WMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLMTSSWLGGIMLHVLKVTRTEFGNLWLAV 438
Query: 437 LIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDTITDD-EGMRLLSI 486
L+RNV+R L +FLVPKG+ + +P +++ ++SD D+ EG R L +
Sbjct: 439 LVRNVMRLLPLCFLFLVPKGDQNTFKLPDEIMGEDSDEEKDEKEGTRNLEL 489
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| TAIR|locus:2045462 AT2G32040 "AT2G32040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 123/420 (29%), Positives = 213/420 (50%)
Query: 45 IVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFP 104
+ +VY QG G ++ +Y KD + P+ + GL LPW++KP++G +D+ P
Sbjct: 130 VAMVY-FVQGVLG-LARLAVSFYLKDDLHLDPAETAVITGLSSLPWLVKPLYGFISDSVP 187
Query: 105 IKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMXXXXXXXXXXXXRN 164
+ GY RR Y V++G+LG S ++A + A L+G R
Sbjct: 188 LFGYRRRSYLVLSGLLGAFSWSLMAGFVDSKYSAAFCILLGSLSVAFSDVVVDSMVVERA 247
Query: 165 SIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVI 224
E+++++ +QSLC S G ++ SG V G + G+ A+ P + + ++
Sbjct: 248 RGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGVTALLPLITSAVAVLV 307
Query: 225 YETRATSHHFEKKKAIESV----IFTMK-GMCK---SIKLPQVWKPSLYMFLSFAVSIST 276
E R +K+ I + + T K M + +IK P V+ P+L++FL A S
Sbjct: 308 NEQRVVRPASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFLPTLFIFLWQATPHSD 367
Query: 277 HEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLY 336
FY+ T+ K G F+ EF+G + + ++AS++GV +Y+ LK P R + F ++
Sbjct: 368 -SAMFYFTTN-KLG--FTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPLRKI-FLVTTIF 422
Query: 337 GIS-GMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGT 395
G GM +I + +N LGI D +F I + + ++++ ++P++VL+ RLCP G+E T
Sbjct: 423 GTGLGMTQVILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAARLCPEGMEAT 482
Query: 396 FFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPK 455
FA LM I GS++ G + +TR + NL +I++ N+ L L+ L+P+
Sbjct: 483 LFATLMSISNGGSVLGGLMGAGLTQAFGITRDSFGNLSTLIILCNLSSLLPLPLLGLLPR 542
|
|
| UNIPROTKB|Q55721 slr0642 "Folate-biopterin transporter" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 122/443 (27%), Positives = 216/443 (48%)
Query: 42 IFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTD 101
+ I+ +Y QG G ++ ++ KD + P+ + IGL PW++KP+ G+ +D
Sbjct: 36 LLAILSIY-FVQGVLG-LSRLAVSFFLKDELGLSPAAMGALIGLGAAPWILKPVLGLMSD 93
Query: 102 AFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMXXXXXXXXXXX 161
P+ GY RR Y ++G++G L+ A L L
Sbjct: 94 TVPLFGYRRRSYLWLSGLMGSAGWLLFAAWVSSGTQAGLVLLFTSLSVAIGDVIVDSLVV 153
Query: 162 XRNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLG 221
R E+ A +QSL + G +I +SG + + I AI P L +
Sbjct: 154 ERAQRESLAQVGSLQSLTWGAAAVGGIITAYASGALLEWFSTRTVFAITAIFPLLTVGAA 213
Query: 222 FVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQF 281
F+I E +T+ EK + + K + ++++ + P+L++F F + + E F
Sbjct: 214 FLISEV-STAEEEEKPQPKAQI----KLVWQAVRQKTILLPTLFIF--FWQATPSAESAF 266
Query: 282 YWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGM 341
++ T + G F +F+G + + +VA +IGV +Y + LK P+R ++ ++ ++ + G+
Sbjct: 267 FYFTTNELG--FEPKFLGRVRLVTSVAGLIGVGLYQRFLKTLPFRVIMGWSTVISSLLGL 324
Query: 342 LDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLM 401
LI I N A+GI D +F + + + + ++ ++P++VL+ RLCP GIE T FALLM
Sbjct: 325 TTLILITHANRAMGIDDHWFSLGDSIILTVTGQIAFMPVLVLAARLCPPGIEATLFALLM 384
Query: 402 CIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNHSNE 461
+ L ++S G ++ H L VT T + NL L+++I N+ L + L+P G+ +
Sbjct: 385 SVMNLAGVLSFEVGSLLTHWLGVTETQFDNLALLVIITNLSTLLPLPFLGLLPAGDPQVK 444
Query: 462 LIPMDLLRKNSDTITDDEGMRLL 484
D K + DD G RL+
Sbjct: 445 ----DKTEKEDNP--DDPGDRLV 461
|
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| TAIR|locus:2160150 AT5G54860 "AT5G54860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 7.9e-39, Sum P(2) = 7.9e-39
Identities = 57/207 (27%), Positives = 111/207 (53%)
Query: 249 GMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVA 308
G+ ++ K P + +P + F++ + FY+ T+ A F+G +G +
Sbjct: 280 GLGRAFKQPIILRPMAWFFIAHITVPNLSTVMFYYQTEVLQLDA---AFLGTARVVGWLG 336
Query: 309 SIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368
+ G IY++ L+D R L FA + ++ +LD++ + R N+ G+ D V+ +
Sbjct: 337 LMFGTFIYNRYLQDMTLRKSLLFAHIGLSVTILLDMVLVSRANVGYGVSDKTMVLFGSAL 396
Query: 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTD 428
+++L+++P ++LS RLCP GIEGT FAL M I+ LG+ + + G + LL ++
Sbjct: 397 GDAINQLKFMPFLILSGRLCPPGIEGTLFALFMSINNLGNTVGSFMGAGLASLLGISSGS 456
Query: 429 YRNLWLVILIRNVLRFATLGLIFLVPK 455
+ N+++ + I+ + + +FL+PK
Sbjct: 457 FDNMFMGLAIQVFCTYIPVLFLFLIPK 483
|
|
| GENEDB_PFALCIPARUM|PF11_0172 PF11_0172 "folate/biopterin transporter, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 322 (118.4 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 108/438 (24%), Positives = 198/438 (45%)
Query: 30 LQMLSSQLHSSFIFGIVLVY--GLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYY 87
L +LS + F F ++VY GL G + + Y +KD ++ P V + + Y
Sbjct: 26 LPLLSEKTKKGFDFTQIVVYLVGLSDGLT-HLASLAIYYLFKDYFRLTPYQVSLILMYPY 84
Query: 88 LPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGIT 147
+P+++KP+ + TD+F I G R+PY + + ++ L +A L L + A L I+
Sbjct: 85 IPFILKPVIALITDSFSIFGMRRKPYLFLFSLFQSLNFLALAFLN-LSVIQASLILFFIS 143
Query: 148 GGMXXXXXXXXXXXXRNSI-ETRALAPDMQSLCAFCSGAGSL-IGYSSSGFFVHHLGHQG 205
+S+ +T + + + GSL + Y S G+F+ + +
Sbjct: 144 LCASFCTTVAEALVVESSMGQTYSQGTNKVTEFIASKAIGSLSVAYFS-GYFLEKMPREY 202
Query: 206 ALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFT-MKGMCKSIKLPQVWKPSL 264
+I P L+I L + + EK+ + IF + + K I P P L
Sbjct: 203 IFIATSIFP-LIISLSCLFLK--------EKEYSTNRNIFNQLSDLIKFINTPIFLGPFL 253
Query: 265 YMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYP 324
Y+F+ +S ++ F++ K G F F+G + +AS+IG++IY LK+
Sbjct: 254 YIFVY--MSGPDYDDAFFFFCTNKLG--FRPSFMGTLRLTYGIASLIGIIIYRVFLKNCS 309
Query: 325 YRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLS 384
R L L+ + +I N LGI + FV++ + ++ ++ +P+ +L+
Sbjct: 310 LRKTLIITTLVSFPIYISPIILTEHINKFLGISNELFVLSGGFLIEAITEIQLLPLFILT 369
Query: 385 TRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRF 444
+C G+E + FA ++ + LGSL K + +L+ + ++ NL L IL
Sbjct: 370 ANICQPGLEASVFATILSVKNLGSLTKKGTSSFITYLMKIDSYNFDNLSLYILTCGFFLL 429
Query: 445 ATLGLIFLVPKGNHSNEL 462
+L L+ L+P H +L
Sbjct: 430 FSLTLVPLLPNEEHIEKL 447
|
|
| UNIPROTKB|Q8IIK1 PF11_0172 "Folate/biopterin transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 322 (118.4 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 108/438 (24%), Positives = 198/438 (45%)
Query: 30 LQMLSSQLHSSFIFGIVLVY--GLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYY 87
L +LS + F F ++VY GL G + + Y +KD ++ P V + + Y
Sbjct: 26 LPLLSEKTKKGFDFTQIVVYLVGLSDGLT-HLASLAIYYLFKDYFRLTPYQVSLILMYPY 84
Query: 88 LPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGIT 147
+P+++KP+ + TD+F I G R+PY + + ++ L +A L L + A L I+
Sbjct: 85 IPFILKPVIALITDSFSIFGMRRKPYLFLFSLFQSLNFLALAFLN-LSVIQASLILFFIS 143
Query: 148 GGMXXXXXXXXXXXXRNSI-ETRALAPDMQSLCAFCSGAGSL-IGYSSSGFFVHHLGHQG 205
+S+ +T + + + GSL + Y S G+F+ + +
Sbjct: 144 LCASFCTTVAEALVVESSMGQTYSQGTNKVTEFIASKAIGSLSVAYFS-GYFLEKMPREY 202
Query: 206 ALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFT-MKGMCKSIKLPQVWKPSL 264
+I P L+I L + + EK+ + IF + + K I P P L
Sbjct: 203 IFIATSIFP-LIISLSCLFLK--------EKEYSTNRNIFNQLSDLIKFINTPIFLGPFL 253
Query: 265 YMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYP 324
Y+F+ +S ++ F++ K G F F+G + +AS+IG++IY LK+
Sbjct: 254 YIFVY--MSGPDYDDAFFFFCTNKLG--FRPSFMGTLRLTYGIASLIGIIIYRVFLKNCS 309
Query: 325 YRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLS 384
R L L+ + +I N LGI + FV++ + ++ ++ +P+ +L+
Sbjct: 310 LRKTLIITTLVSFPIYISPIILTEHINKFLGISNELFVLSGGFLIEAITEIQLLPLFILT 369
Query: 385 TRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRF 444
+C G+E + FA ++ + LGSL K + +L+ + ++ NL L IL
Sbjct: 370 ANICQPGLEASVFATILSVKNLGSLTKKGTSSFITYLMKIDSYNFDNLSLYILTCGFFLL 429
Query: 445 ATLGLIFLVPKGNHSNEL 462
+L L+ L+P H +L
Sbjct: 430 FSLTLVPLLPNEEHIEKL 447
|
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| GENEDB_PFALCIPARUM|MAL8P1.13 MAL8P1.13 "integral membrane protein, conserved" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 95/411 (23%), Positives = 190/411 (46%)
Query: 66 YYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSA 125
Y KD + P+++ I + +PW +K +W + +D +PI GY R+ Y ++ L ++S
Sbjct: 76 YLLKDNYHLHPASLSIVMCFIKIPWSIKLVWAVISDNYPIFGYRRKYYLLLGSFLCILSL 135
Query: 126 LIVALL--GKLPIALALTCLIGITGGMXXXXXXXXXXXXRNSIETRALAPDMQSLCAFCS 183
+ + L+ L I + L + + + + A ++ AF
Sbjct: 136 ICLGLITHNNLFITILLLFIYFFGSSLCNVIGEAQVVESNRNCSINSSARNVSLFFAFRK 195
Query: 184 GAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESV 243
+ +++ Y S G+ + + + I + P + GF I E R + K +I+
Sbjct: 196 LSFAIMSYLS-GYLLLLISKKHIFLIGSFLPICVFTSGFFIIEKRNYT-----KSSIKDQ 249
Query: 244 IFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYA 303
I K + IKL + +++F+ + + FY + K FS +G +
Sbjct: 250 I---KCIYSIIKLSYLKNFIIFIFIMMSTPSCGNTLFFYITNELK----FSPNLLGKMAM 302
Query: 304 LGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 363
++AS I ++ Y R LL ++ ++ +L L+ I + N L IP++ F I
Sbjct: 303 FQSLASFISIISYMLFFTKIDIRKLLLYSTIIITPFCLLPLVVIKKVNYFLFIPNTLFFI 362
Query: 364 TEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423
T+ + ++ + +P++VL +RL P G E T ++LL+ + S+IS + ++ + L+
Sbjct: 363 TDTVLIEFIAEFQTMPILVLCSRLIPEGFESTIYSLLLSSNNFASIISSFLSSLLTYSLN 422
Query: 424 VTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDT 474
+T T++ NL +I+I + + ++++P NHS + +L NS T
Sbjct: 423 ITSTNFTNLPYMIIICCLTNIIPIFFLYILP--NHSQK---KNLQHSNSHT 468
|
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| UNIPROTKB|Q8IBB7 MAL8P1.13 "Folate/biopterin transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 95/411 (23%), Positives = 190/411 (46%)
Query: 66 YYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSA 125
Y KD + P+++ I + +PW +K +W + +D +PI GY R+ Y ++ L ++S
Sbjct: 76 YLLKDNYHLHPASLSIVMCFIKIPWSIKLVWAVISDNYPIFGYRRKYYLLLGSFLCILSL 135
Query: 126 LIVALL--GKLPIALALTCLIGITGGMXXXXXXXXXXXXRNSIETRALAPDMQSLCAFCS 183
+ + L+ L I + L + + + + A ++ AF
Sbjct: 136 ICLGLITHNNLFITILLLFIYFFGSSLCNVIGEAQVVESNRNCSINSSARNVSLFFAFRK 195
Query: 184 GAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESV 243
+ +++ Y S G+ + + + I + P + GF I E R + K +I+
Sbjct: 196 LSFAIMSYLS-GYLLLLISKKHIFLIGSFLPICVFTSGFFIIEKRNYT-----KSSIKDQ 249
Query: 244 IFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYA 303
I K + IKL + +++F+ + + FY + K FS +G +
Sbjct: 250 I---KCIYSIIKLSYLKNFIIFIFIMMSTPSCGNTLFFYITNELK----FSPNLLGKMAM 302
Query: 304 LGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 363
++AS I ++ Y R LL ++ ++ +L L+ I + N L IP++ F I
Sbjct: 303 FQSLASFISIISYMLFFTKIDIRKLLLYSTIIITPFCLLPLVVIKKVNYFLFIPNTLFFI 362
Query: 364 TEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423
T+ + ++ + +P++VL +RL P G E T ++LL+ + S+IS + ++ + L+
Sbjct: 363 TDTVLIEFIAEFQTMPILVLCSRLIPEGFESTIYSLLLSSNNFASIISSFLSSLLTYSLN 422
Query: 424 VTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNSDT 474
+T T++ NL +I+I + + ++++P NHS + +L NS T
Sbjct: 423 ITSTNFTNLPYMIIICCLTNIIPIFFLYILP--NHSQK---KNLQHSNSHT 468
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LEV7 | FBT6_ARATH | No assigned EC number | 0.6452 | 0.9756 | 0.9542 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XVIII.1934.1 | hypothetical protein (440 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.I.3658.1 | hypothetical protein (201 aa) | • | 0.421 | |||||||
 | gw1.29.56.1 | hypothetical protein (278 aa) | • | 0.421 | |||||||
 | eugene3.121720001 | hypothetical protein (63 aa) | • | 0.419 | |||||||
 | estExt_fgenesh4_pg.C_LG_V0629 | hypothetical protein (251 aa) | • | 0.419 | |||||||
 | gw1.II.1221.1 | hypothetical protein (155 aa) | • | 0.417 | |||||||
 | estExt_Genewise1_v1.C_LG_XIV1543 | SubName- Full=Putative uncharacterized protein; (151 aa) | • | 0.416 | |||||||
 | eugene3.00080706 | hypothetical protein (213 aa) | • | 0.415 | |||||||
 | gw1.II.1028.1 | hypothetical protein (152 aa) | • | 0.413 | |||||||
 | estExt_Genewise1_v1.C_1340217 | hypothetical protein (132 aa) | • | 0.409 | |||||||
 | gw1.XV.3200.1 | hypothetical protein (265 aa) | • | 0.402 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 492 | |||
| pfam03092 | 425 | pfam03092, BT1, BT1 family | 1e-103 | |
| TIGR00788 | 468 | TIGR00788, fbt, folate/biopterin transporter | 2e-58 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.003 |
| >gnl|CDD|111933 pfam03092, BT1, BT1 family | Back alignment and domain information |
|---|
Score = 315 bits (810), Expect = e-103
Identities = 125/408 (30%), Positives = 201/408 (49%), Gaps = 8/408 (1%)
Query: 53 QGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRP 112
QG +G ++ T + KD + P+ Q GL LPWV+KP G+ +D F + GY RRP
Sbjct: 1 QGVAGGLSRLSTQFMLKDRLGIDPARYQRLSGLATLPWVIKPFTGVLSDGFALFGYRRRP 60
Query: 113 YFVIAGVLGLVSALIVALLGKLP--IALALTCLIGITGGMAIADVVIDACIARNSIETRA 170
Y ++G+LG AL LL A+A + + G A+ DV+ DA + +
Sbjct: 61 YLALSGLLGGAFALSYGLLPAKESSAAVAAAFIFLSSLGKALVDVLSDALYSERGRQEPL 120
Query: 171 LAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRAT 230
P + S CS G +IG SG + Q + + A L V V+ E
Sbjct: 121 AGPSLVSWIWGCSAVGGIIGSVLSGPLLDTFKPQISFLVTAALQLLTCVDAAVLKEEEVL 180
Query: 231 SHHFEKK---KAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQ-FYWATD 286
+ + + K+ + P++ P+L +A + + FY+ T+
Sbjct: 181 G--LGRPPVPCLLGLNREVISRNWKAFRYPEILAPTLTWISFWAAPLVIAKADMFYYQTN 238
Query: 287 PKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIF 346
GP FS F G + +G++A ++GV +Y++ LK +PYR +L +SG+ DLI
Sbjct: 239 ELGGPNFSYSFYGTVKVIGSIAGLLGVTLYNRFLKKHPYRLTFGVTTVLQVLSGLFDLIL 298
Query: 347 ILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDIL 406
+ RWN LGI D +++ + + ++ L+++P +VL RLCPRG E T FALL I L
Sbjct: 299 VKRWNRYLGISDHVYILGDSIILEVLYMLKFMPFLVLLARLCPRGSESTVFALLASIANL 358
Query: 407 GSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVP 454
G ++S G +++ L VT + NL L++LI ++ L L+ L+P
Sbjct: 359 GQIVSSSLGALLMEYLGVTEDQFSNLPLLLLIGSLCTLLPLPLLGLLP 406
|
Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters. One such protein, previously termed (and is still annotated as) ORFG, was shown to encode a biopterin transport protein using null mutants, thus being subsequently renamed BT1. The significant similarity of ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative transmembrane protein and another member of this family) was previously noted. This family also contains five putative Arabidopsis thaliana proteins of unknown function. In addition, it also contains two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). Length = 425 |
| >gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 2e-58
Identities = 125/448 (27%), Positives = 205/448 (45%), Gaps = 20/448 (4%)
Query: 20 LSLVLEPVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTV 79
L P + S H + I L +G +G ++ D + +
Sbjct: 6 RLLRAAPFLGYIPVFSF-HPRVVLAIGLQVLFVKGIAGLMRLPLS-PMLTDDLGLDGARY 63
Query: 80 QIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLP--IA 137
Q +GL L W +KP G+ +D FP+ GY +R Y V++G+LG SA++ LL
Sbjct: 64 QRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLG--SAILYGLLPGKVSSAK 121
Query: 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFF 197
+A + A+ DV++D+ + E+ + P + S S G LI G
Sbjct: 122 VAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPL 181
Query: 198 VHHLGHQGALGILAIPPTL-LIVLGFV----------IYETRATSHHFEKKKAIESVIFT 246
+ + I A L L V I + + +V
Sbjct: 182 LDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQ 241
Query: 247 MKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGA 306
+ G+ +I+L ++ KP +++FLS+A G + AT F G+ +G
Sbjct: 242 ILGLRGAIQLLEIAKPLIFIFLSYANLPGA-SGSVFCATTQCLP--GGPSFSGMSKVVGN 298
Query: 307 VASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQ 366
+ S+ GV Y + LK +PYR L LLY +S + DLI + RWNLA GI D FV+ +
Sbjct: 299 LGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358
Query: 367 CVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTR 426
++ ++++L+++P +VL RLCP G E + FALL I LGS +S + G +++ + +T
Sbjct: 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITC 418
Query: 427 TDYRNLWLVILIRNVLRFATLGLIFLVP 454
+ NLWL+IL ++ L L+ L+P
Sbjct: 419 DNSNNLWLLILGHSLAPLLPLPLLHLLP 446
|
The Folate-Biopterin Transporter (FBT) Family (TC 2.A.71)The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity [Cell envelope, Other]. Length = 468 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 56/320 (17%), Positives = 104/320 (32%), Gaps = 20/320 (6%)
Query: 46 VLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLP-WVMKPIWGIFTDAFP 104
+ + G S Y + + P+ + + + + L + +P+ G +D F
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 105 IKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARN 164
RR +I +L + L++ L + L L L G+ GG A IA
Sbjct: 61 -----RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFP--AAAALIADW 113
Query: 165 -SIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFV 223
E R A L + G G+ +G G G + A ILAI L VL +
Sbjct: 114 FPPEERGRA---LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170
Query: 224 IY-ETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFY 282
+ S + + + + + + + L +F
Sbjct: 171 LLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFF-------ALLT 223
Query: 283 WATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGML 342
+ + S G++ L + IG L+ + R L A LL ++ +
Sbjct: 224 YLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALG 283
Query: 343 DLIFILRWNLALGIPDSFFV 362
+ L + + +
Sbjct: 284 LALLSLTESSLWLLVALLLL 303
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 52/316 (16%), Positives = 94/316 (29%), Gaps = 46/316 (14%)
Query: 43 FGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLP-WVMKPIWGIFTD 101
++ + G + + S + + + L + + G +D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLL-AEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD 59
Query: 102 AFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACI 161
F RR ++ +L + +L++A L + L L+G+ G A I
Sbjct: 60 RFG-----RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGL--GGGALYPAAAALI 112
Query: 162 ARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLG 221
A L + G G+L+G G LG + ILAI LL +L
Sbjct: 113 AEWFPPKERGR--ALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL 170
Query: 222 FVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQF 281
+ L + L F +S +
Sbjct: 171 LFL-------------------------------LRLLL---LLALAFFLLSFGYYGLLT 196
Query: 282 YWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDY-PYRNLLFFAQLLYGISG 340
Y + S G++ +L + I+G L+ R LL LL +
Sbjct: 197 YLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGL 256
Query: 341 MLDLIFILRWNLALGI 356
+L + L + +
Sbjct: 257 LLLALAPSLALLLVAL 272
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 9/185 (4%)
Query: 42 IFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLP-WVMKPIWGIFT 100
+ ++ + F Y ++V + + + + L+ L + + G+ +
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 101 DAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDAC 160
D RR +I +L + L++AL L + L L+G G A ++
Sbjct: 236 DRLG----RRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFP-ALLTLA 290
Query: 161 IARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVL 220
E R A L G +G +G + G+ G ILA L +L
Sbjct: 291 SELAPPEARGTA---SGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347
Query: 221 GFVIY 225
++
Sbjct: 348 LLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 100.0 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 100.0 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.98 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.97 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.97 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.97 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.96 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.96 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.96 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.96 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.96 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.96 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.95 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.95 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.95 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.95 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.95 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.95 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.95 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.95 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.95 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.94 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.94 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.94 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.94 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.93 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.93 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.93 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.93 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.93 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.93 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.92 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.92 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.92 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.92 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.92 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.91 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.9 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.9 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.9 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.9 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.89 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.88 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.87 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.87 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.87 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.86 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.85 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.84 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.84 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.82 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.82 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.81 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.77 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.77 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.72 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.7 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.68 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.67 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.64 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 99.63 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 99.6 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.53 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.52 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.49 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.35 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.34 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.32 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.27 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.26 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.25 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.25 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.22 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.21 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.19 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.19 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.19 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.18 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.18 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.17 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.17 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.17 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.16 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.15 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.15 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.14 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.14 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.14 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.14 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.13 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.13 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.12 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.12 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.12 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.12 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.11 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.11 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.11 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.11 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.11 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.1 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.1 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.09 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.08 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.08 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.07 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.04 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.04 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.04 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.03 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.03 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.03 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.02 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.02 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.99 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.99 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.98 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.98 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.92 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.91 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.89 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.89 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.89 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.89 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.87 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.87 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.87 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.87 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.87 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.86 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.86 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.86 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.86 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.85 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.82 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.82 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.8 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.8 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.8 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.79 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.79 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.79 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.76 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.76 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.76 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.75 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.75 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.73 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.73 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.73 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.72 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.71 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.7 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.69 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.68 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.65 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.65 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.65 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.61 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.6 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.53 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.48 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.48 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.48 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.45 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.44 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.42 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.42 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.41 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.32 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.32 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.26 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.2 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.15 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.1 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.06 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.06 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.06 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.05 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.05 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.05 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.04 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.03 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.02 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.02 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.97 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.92 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.84 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.71 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.69 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.69 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.6 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.52 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.51 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.34 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.25 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.15 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.11 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.08 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.04 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.92 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.9 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.66 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.6 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.45 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.45 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.26 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 95.98 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.96 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.36 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.15 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.84 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 94.61 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.05 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 93.4 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.34 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 93.26 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 93.22 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 92.91 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 92.23 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 92.06 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 89.89 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 88.94 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 88.58 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 86.2 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 85.82 |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=327.31 Aligned_cols=409 Identities=33% Similarity=0.636 Sum_probs=340.9
Q ss_pred ccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhhhhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 044122 53 QGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLG 132 (492)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~ 132 (492)
+|+..++......++++|++|+++++.+.+.++..+||.++|++|.++|.+|++|||||++++++.++..++.+.++..+
T Consensus 1 qG~~~~l~~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~ 80 (433)
T PF03092_consen 1 QGFAGGLSRLAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP 80 (433)
T ss_pred CChhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 35555677778889999999999999999999999999999999999999999999999999999999987777777655
Q ss_pred C--chHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHH
Q 044122 133 K--LPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGIL 210 (492)
Q Consensus 133 ~--~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~ 210 (492)
+ .+...+.+..++..+|.++.++..++++.|..+++|++|+..+++.+....+|.+++..++|.+.+..+++..|.+.
T Consensus 81 ~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 81 ASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 4 22334556678889999999999999999999988877999999999999999999999999999999999999998
Q ss_pred hHhHHHHHHhhheeeeccCCCccch-----h---hhhHHHHHHHHHHHHHhcccccchhhHH-HHhhhhhhcccccccce
Q 044122 211 AIPPTLLIVLGFVIYETRATSHHFE-----K---KKAIESVIFTMKGMCKSIKLPQVWKPSL-YMFLSFAVSISTHEGQF 281 (492)
Q Consensus 211 ~~~~~~~~~~~~~~~e~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 281 (492)
+++..+..+..+++.|+++..+..+ + +......++..+++++.+++|.+|...+ +.++............+
T Consensus 161 ~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~f 240 (433)
T PF03092_consen 161 AALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSF 240 (433)
T ss_pred HHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEE
Confidence 8887776444444444322211110 0 1111225677888999999999999888 55555543332323367
Q ss_pred eeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcch
Q 044122 282 YWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFF 361 (492)
Q Consensus 282 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (492)
||.++...+.++|+...+.+..++.++.++|..+..++..+.+.|+++..+.++..+..+..+.++.+++..+|+++.++
T Consensus 241 y~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f 320 (433)
T PF03092_consen 241 YFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWF 320 (433)
T ss_pred EEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEE
Confidence 77777644566999999999999999999999999999999999999988887777666655556667777788999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHH
Q 044122 362 VITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNV 441 (492)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~ 441 (492)
.++...+.....++.++|...+.++++|++.+|+.+|+..++.|+|..++..++..+.+.++.+.++|++++...+++.+
T Consensus 321 ~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~ 400 (433)
T PF03092_consen 321 ALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSV 400 (433)
T ss_pred EEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHH
Confidence 89988999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHHHhhcCCCCcccc
Q 044122 442 LRFATLGLIFLVPKGNHSNE 461 (492)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~ 461 (492)
+.+++++++.++|++++..+
T Consensus 401 ~~ll~l~ll~lLp~~~~~~~ 420 (433)
T PF03092_consen 401 IQLLPLPLLFLLPPQKRITD 420 (433)
T ss_pred HHHHHHHHHHHcCCCchhhH
Confidence 99999999999998765544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=320.42 Aligned_cols=413 Identities=27% Similarity=0.439 Sum_probs=326.7
Q ss_pred ccCcchh-hhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhhhhHHhhhccccccCCCCchhHH
Q 044122 36 QLHSSFI-FGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYF 114 (492)
Q Consensus 36 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g~~Rk~~l 114 (492)
.++.+.. .++...| +.+|+. .+....+++++++++|+|+++++.+.+...+++.++|+||+++||++++|+|||+++
T Consensus 21 ~~~~~~~~~~~~~~y-~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l 98 (468)
T TIGR00788 21 SFHPRVVLAIGLQVL-FVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYL 98 (468)
T ss_pred cCCcchHHHHHHHHH-HHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHH
Confidence 3455544 4455577 999999 899999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHh
Q 044122 115 VIAGVLGL-VSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSS 193 (492)
Q Consensus 115 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l 193 (492)
+++.++.. ++...++..++. ...+...+++.+++.+..+++.++++.|..+++++.++.++++.+...++|.++|+.+
T Consensus 99 ~~~~~l~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l 177 (468)
T TIGR00788 99 VLSGLLGSAILYGLLPGKVSS-AKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLL 177 (468)
T ss_pred HHHHHHHHHHHHHhcccccch-HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHH
Confidence 99988773 443333333332 2234446788899999999999999999988555667778888888888999999999
Q ss_pred HhHhhhcCChHHHHHHHhHhHHHHHHhhheeeeccC-CCcc-chh---------hhhHHHHHHHHHHHHHhcccccchhh
Q 044122 194 SGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRA-TSHH-FEK---------KKAIESVIFTMKGMCKSIKLPQVWKP 262 (492)
Q Consensus 194 ~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~-~~~~-~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (492)
+|.+.+.++||..|++.+++.++..+..++++|++. ..++ .++ .......++..+++++.+++|.++..
T Consensus 178 ~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~ 257 (468)
T TIGR00788 178 GGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKP 257 (468)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 999999999999999998888777666677888642 1111 000 00011233445677888899999988
Q ss_pred HHHHhh-hhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhh
Q 044122 263 SLYMFL-SFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGM 341 (492)
Q Consensus 263 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~ 341 (492)
+++.++ +.. ........+++.++ .+|+++.+.|.+....+++.+++..+.+++.+|++.|+.+.++.++..+..+
T Consensus 258 l~fifl~~~~-~~~~~~~~f~~~~~---~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~ 333 (468)
T TIGR00788 258 LIFIFLSYAN-LPGASGSVFCATTQ---CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSL 333 (468)
T ss_pred HHHHHHHHhh-cCCCCceeEEEEcc---cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHh
Confidence 777777 332 23333333333333 3899999999999999999999999999999999999999888777776544
Q ss_pred hHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 342 LDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
....+..+++...++++.++.++...+.++..++.++|...++++.+|++.+|+.+|+.+++.++|..+++.++|.+.++
T Consensus 334 ~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 334 FDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred CceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33233334444445566556666777888888999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcchhHHHHHHHHHHHHHHHHHHhhcCC
Q 044122 422 LHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPK 455 (492)
Q Consensus 422 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (492)
.|.+.++|+..+....++.++.++++.+++++|+
T Consensus 414 ~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 414 IGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999998
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=248.38 Aligned_cols=359 Identities=18% Similarity=0.134 Sum_probs=267.9
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
|..+...-.....+|++.+| +|+|..++|+.+++|.++..+ .|+...++||+ +||+.++....++.++.++++
T Consensus 23 F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-----~Rr~lLl~~l~lFi~~n~l~a 96 (394)
T COG2814 23 FAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGAPLLALLTGRL-----ERRRLLLGLLALFIVSNLLSA 96 (394)
T ss_pred HHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----chHHHHHHHHHHHHHHHHHHH
Confidence 55666666777778888776 999999999999999999988 99999999996 789999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
+++|+. .+++.|++.++..+.......+...++. +|++|+++.++...+..++.++|.++|.++.+.+|||..|++
T Consensus 97 lAp~f~--~Ll~aR~~~g~a~G~f~~i~~~~a~~lv--pp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ 172 (394)
T COG2814 97 LAPSFA--VLLLARALAGLAHGVFWSIAAALAARLV--PPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA 172 (394)
T ss_pred HhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHc--CccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence 999866 4778899999999999999999999998 446799999999999999999999999999999999999999
Q ss_pred HhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCC
Q 044122 210 LAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPK 288 (492)
Q Consensus 210 ~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (492)
.+.++++. +..+..+| ++..+++. + ...++..+.+|+|+++...+..++.....+...+ |..+...
T Consensus 173 ia~l~ll~~~~~~~~lP-~~~~~~~~--~-------~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ft---Yi~P~L~ 239 (394)
T COG2814 173 IAVLALLALLLLWKLLP-PSEISGSL--P-------GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYT---YIRPFLE 239 (394)
T ss_pred HHHHHHHHHHHHHHhCC-CccCCCCC--C-------cchhHHHHHhcCchHHHHHHHHHHHHcchhhhHH---hHHHHHH
Confidence 99999887 56777888 11111111 0 1224567889999999887776665544433222 3222223
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+..|+|++.++++...++++.++|..+.||+.|| +.|+.+.....+.....+. +.+.. ...+..+....+
T Consensus 240 ~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~-l~~~~--------~~~~~~~~~~~~ 309 (394)
T COG2814 240 SVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLA-LTFTG--------ASPALALALLFL 309 (394)
T ss_pred HccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHH-HHHhc--------chHHHHHHHHHH
Confidence 4489999999999999999999999999999999 7777777665555543222 11111 111122222222
Q ss_pred HHHHHHHHHHHH-HHHHHhcCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHH
Q 044122 369 SHIVSRLRWIPM-IVLSTRLCP--RGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFA 445 (492)
Q Consensus 369 ~~~~~~~~~~~~-~~~~~~~~~--~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 445 (492)
.++...|. ..+..+..+ ++.+..+.+++....|+|..+|..++|.+.|+.|+.. ...++++..++
T Consensus 310 ----wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~--------~~~~~a~l~~~ 377 (394)
T COG2814 310 ----WGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAA--------TGWVGAALLLL 377 (394)
T ss_pred ----HHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH--------HHHHHHHHHHH
Confidence 23332222 223333333 4888999999999999999999999999999977542 44455555555
Q ss_pred HHHHHhhcC
Q 044122 446 TLGLIFLVP 454 (492)
Q Consensus 446 ~~~~~~~~~ 454 (492)
+........
T Consensus 378 a~~~~~~~~ 386 (394)
T COG2814 378 ALLLALLSA 386 (394)
T ss_pred HHHHHHHHH
Confidence 555554433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=263.61 Aligned_cols=387 Identities=16% Similarity=0.166 Sum_probs=269.3
Q ss_pred hhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhhhhHHhhhcccc--ccCCCCchhHHHHHHH
Q 044122 42 IFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAF--PIKGYHRRPYFVIAGV 119 (492)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~--~~~g~~Rk~~l~~~~~ 119 (492)
...+..++ +.+++........+|.++++ .|.|.+++|.. +....++..+++||+++||+ +++| |||+++..+.+
T Consensus 14 ~~~~~~l~-~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~-~~~~~~~~~~~l~gpl~Dr~~~~~~G-rrr~~ll~~~i 89 (491)
T PRK11010 14 SAILLILG-FASGLPLALTSGTLQAWMTV-ENIDLKTIGFF-SLVGQAYVFKFLWSPLMDRYTPPFLG-RRRGWLLATQL 89 (491)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHcccccCCC-CchHHHHHHHH
Confidence 44455666 88899888888889999887 79999999986 56666677799999999997 4446 77888989988
Q ss_pred HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhh
Q 044122 120 LGLVSALIVALLGK-LPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFV 198 (492)
Q Consensus 120 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~ 198 (492)
..+++...+++.++ .+...+...+++.+++.+..++..+++..|+.+ +++|++..++...+..+|.++++.+++++.
T Consensus 90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~--~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLP--AEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777543 233445556778888889999999999999985 367999999999999999999999999998
Q ss_pred h-cCChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhccccc
Q 044122 199 H-HLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTH 277 (492)
Q Consensus 199 ~-~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (492)
+ ..|||..|++.+++.++..+..+++||+++.++++ ++..+ ....++++.++++..|...+..++.........
T Consensus 168 ~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~--~~~~~---~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~ 242 (491)
T PRK11010 168 DRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVP--KTLEQ---AVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAM 242 (491)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhcCCCccccccc--cchhh---hHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHH
Confidence 8 57999999999887776655555677764322111 11001 112345566777777655544443332221111
Q ss_pred ccceeeeccCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 044122 278 EGQFYWATDPKAGPAFSQEFVGVIY-ALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGI 356 (492)
Q Consensus 278 ~~~~~~~~~~~~~~g~~~~~~g~~~-~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (492)
....+|..+. .|+++.+.+.+. ....++.+++.++.|++.||+++|+.+..+.++..+..+....+.. ..
T Consensus 243 ~~~~~~l~~~---~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~------~~ 313 (491)
T PRK11010 243 SLTTTFLIRG---VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI------TD 313 (491)
T ss_pred HHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh------cc
Confidence 1222232222 799999999987 4667899999999999999999888776554443332222111111 01
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHH
Q 044122 357 PDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVI 436 (492)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~ 436 (492)
++.........+..++.++...+..++..+.++++..++.+|+.++..++|..+++.+.|++.|..|+. . .+
T Consensus 314 ~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~-----~---~f 385 (491)
T PRK11010 314 KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWP-----T---FY 385 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----H---HH
Confidence 111122222334444456666666778889999999999999999999999999999999999987632 2 45
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 044122 437 LIRNVLRFATLGLIFLVPKG 456 (492)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~ 456 (492)
.+..++.+++++.....+++
T Consensus 386 ~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 386 LFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 55555666666555555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=253.64 Aligned_cols=384 Identities=14% Similarity=0.142 Sum_probs=262.2
Q ss_pred hHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhhhhHHhhhccccc--cCCCCchhHHHHHHHHHH
Q 044122 45 IVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFP--IKGYHRRPYFVIAGVLGL 122 (492)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~--~~g~~Rk~~l~~~~~~~~ 122 (492)
...+| +.|++..++....+|.|+++ .|+|.+++|++. ....++.++|+||+++||++ ..| |||++++.+.++.+
T Consensus 4 ~~~l~-~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~-~~~~~~~~~~l~g~~~Dr~~~~~~g-~rr~~l~~~~~~~~ 79 (402)
T PRK11902 4 MLLLG-FASGLPLALTSGTLQAWMTV-EGLDIQTIGFFS-LVGQAYIFKFLWAPLMDRYTPPLLG-RRRGWLLLTQVGLA 79 (402)
T ss_pred HHHHH-HHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHH-HHHHHHHHHHHHHHHHHcccccCCC-cchhHHHHHHHHHH
Confidence 45677 99999999999999999998 799999999884 44446777999999999982 235 77889999999988
Q ss_pred HHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhc-
Q 044122 123 VSALIVALLGKL-PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHH- 200 (492)
Q Consensus 123 ~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~- 200 (492)
++...+++.++. +.+.+....++.++..+..+++.++++.|+.+ +++|++..++...+..+|.++++.+++.+.+.
T Consensus 80 l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~ 157 (402)
T PRK11902 80 ASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLH--PEERGAGAAVKVLGYRLAMLVSGGLALWLADRV 157 (402)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 888887776432 23334444455677888889999999999984 46799999999999999999999999988885
Q ss_pred CChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccc
Q 044122 201 LGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQ 280 (492)
Q Consensus 201 ~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (492)
.|||..|++.++..++..+..++.||+++++.++ ++..+ +..++.++.+|||.++..++..++............
T Consensus 158 ~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~--~~~~~---~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~ 232 (402)
T PRK11902 158 LGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPP--RSLGE---AVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLS 232 (402)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCccccccc--chhHH---HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHH
Confidence 5999999998887766655556677765432211 11011 223456678889988876655444333211111111
Q ss_pred eeeeccCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCc
Q 044122 281 FYWATDPKAGPAFSQEFVGVIYAL-GAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDS 359 (492)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~g~~~~~-~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (492)
.++..+ +.|+++.+++++... ..++.+++.++.+++.||+++|+.+..+..+..+..+....+.. ..++.
T Consensus 233 ~~~l~~---~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~------~~~~~ 303 (402)
T PRK11902 233 TTFLIR---GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV------TPKHL 303 (402)
T ss_pred HHHHHH---hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh------cCCcH
Confidence 122222 278999999998755 45578999999999999999888776655544432222111111 01111
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHH
Q 044122 360 FFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIR 439 (492)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~ 439 (492)
+..+....+..+..++...+........++++.+++..++.++..+++..+++.++|.+.|+.|+. ..+.+.
T Consensus 304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~--------~~f~~~ 375 (402)
T PRK11902 304 WTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWP--------GFYLMT 375 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHHHHH
Confidence 222222223334445555555555566666666677778878888888887888999999998853 255556
Q ss_pred HHHHHHHHHHHhhcCCC
Q 044122 440 NVLRFATLGLIFLVPKG 456 (492)
Q Consensus 440 ~~~~~~~~~~~~~~~~~ 456 (492)
+++++++.+..+..+++
T Consensus 376 ~~~~~~~~~~~~~~~~~ 392 (402)
T PRK11902 376 VVIALPGLALLWLMRGT 392 (402)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 66666666666555544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-30 Score=256.07 Aligned_cols=385 Identities=13% Similarity=0.117 Sum_probs=262.0
Q ss_pred chhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhcccc-ccCCCCchhHHHHHHHHHHHHHHHHHhcCCc
Q 044122 57 GSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAF-PIKGYHRRPYFVIAGVLGLVSALIVALLGKL 134 (492)
Q Consensus 57 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~-~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~ 134 (492)
.......++++++|++|++++++|++.++..+..++ +|+.|+++||+ +++| ||||+++.+.+..+++.+++...++.
T Consensus 15 ~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~G-rrr~~i~~~~~~~~i~~~~~~~~~~~ 93 (437)
T TIGR00792 15 FAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWG-KFRPWLLIGAIPFSIVLVLLFTTPDF 93 (437)
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCC-CcchhHHHhHHHHHHHHHHHHhCCCC
Confidence 345555677888888999999999999999998887 99999999999 4567 88999999999888888888777654
Q ss_pred h----HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhh-------cCCh
Q 044122 135 P----IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVH-------HLGH 203 (492)
Q Consensus 135 ~----~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~-------~~gw 203 (492)
. ...+++..++.+++.+...++..++..+..++ +++|+++.++.+.+..+|.++++.+.+.+.. ..||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~ 172 (437)
T TIGR00792 94 SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLD-PRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGW 172 (437)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccH
Confidence 2 23344455666777777777788888887643 4678999999888888888887776665542 4689
Q ss_pred HHHHHHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhccccccccee
Q 044122 204 QGALGILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFY 282 (492)
Q Consensus 204 ~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (492)
|+.+.+.+++.++. .+.+++.||++++.+++ ++++.+. .+.+++.++||.++...+..++.............+
T Consensus 173 ~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (437)
T TIGR00792 173 FMFALVLALIGVVSLIICFFGTKERYSEIPKN--IEKKLSL---KQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVY 247 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc--cccCCCH---HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhhe
Confidence 99999988888776 44556677765321111 0111111 234566778898887766555544433222223344
Q ss_pred eeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchh
Q 044122 283 WATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFV 362 (492)
Q Consensus 283 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (492)
+..+. .+ ++...+.+..+..++.+++.++.+++.||+++|+.+..+..+..+..+. ..+.. .+.+..
T Consensus 248 ~~~~~---~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~ 314 (437)
T TIGR00792 248 YFTYV---LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLI-FFFAG--------SNLPLI 314 (437)
T ss_pred eEeee---cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH-HHHcc--------hhHHHH
Confidence 54443 34 4556677777788999999999999999999999887776555443221 11110 111122
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-----
Q 044122 363 ITEQCVSHIVSRLRWIPMIVLSTRLCP-------RGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYR----- 430 (492)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~----- 430 (492)
+....+.++..+.......++.++.++ ++.+|+++|+.++..++|..+++.+.|.+.+..|+..+.-+
T Consensus 315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~ 394 (437)
T TIGR00792 315 LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITL 394 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHH
Confidence 222234444445555555666676654 56789999999999999999999999999999887532111
Q ss_pred -hh-HHHHHHHHHHHHHHHHHHh-hcCCCCcccc
Q 044122 431 -NL-WLVILIRNVLRFATLGLIF-LVPKGNHSNE 461 (492)
Q Consensus 431 -~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 461 (492)
.+ +.+..+.+++.+++++... .+|.+|++.+
T Consensus 395 ~~~~~~~~~~p~i~~~~~~~~~~~~y~l~~~~~~ 428 (437)
T TIGR00792 395 NGIKILMFAVPALFLLLAAIIIGRFYKLTEKKHA 428 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHeeCcHHHHH
Confidence 11 2344455556666776665 7777665543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-30 Score=249.46 Aligned_cols=350 Identities=16% Similarity=0.112 Sum_probs=241.9
Q ss_pred hhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 044122 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALA 139 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (492)
...+|.+. +++|.|++++|++.+.+.+++.+ ++++|+++||+ +||+++..+.++..++++.++++++.. .+
T Consensus 29 ~~~~~~l~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~--~l 100 (390)
T PRK03545 29 VGLLSDIA-QSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-----ERRKLLIGLFVLFIASHVLSALAWNFT--VL 100 (390)
T ss_pred HcchHHHH-hHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHHHHHHhccHH--HH
Confidence 33455554 55999999999999999998877 89999999996 788899999999999999999888754 35
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH-H
Q 044122 140 LTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL-I 218 (492)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~-~ 218 (492)
++.|++++++.+...+...+++.+..++ ++|++++++...+.++|.+++|++++.+.++.|||+.|++.+++.++. .
T Consensus 101 ~~~r~~~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~ 178 (390)
T PRK03545 101 LISRIGIAFAHAIFWSITASLAIRVAPA--GKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLL 178 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCh--hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 6678888998888878888888888743 679999999999999999999999999999999999999998887766 3
Q ss_pred HhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHH
Q 044122 219 VLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFV 298 (492)
Q Consensus 219 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 298 (492)
.....+||+++++++ ..++.++.+|+|.++......++..............+..+. .|+++.+.
T Consensus 179 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~g~s~~~~ 243 (390)
T PRK03545 179 LLIKLLPLLPSEHSG------------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV---AGLSENFA 243 (390)
T ss_pred HHHHhCCCCCCCCcc------------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHH
Confidence 344455654322110 113455677888876554433332222211111122222332 68889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHH
Q 044122 299 GVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWI 378 (492)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (492)
+.+.....++.+++.++.+++.||+++|+.. .+..+....... .... .++.........+.+........
T Consensus 244 ~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~--l~~~-------~~~~~~~~~~~~l~g~~~~~~~~ 313 (390)
T PRK03545 244 TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLL--LLPA-------ANSEWHLSVLSIFWGIAIMCIGL 313 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHH--HHHH-------hchHHHHHHHHHHHHHHHhcchH
Confidence 9998888999999999999999999876543 332222221111 1111 01111112222233333232233
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhcC
Q 044122 379 PMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVP 454 (492)
Q Consensus 379 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (492)
.......+..| +.+++++|+++...++|..+||.++|++.|+.|+.. .+.+.+++.+++++......
T Consensus 314 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 314 AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSS--------IGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhH--------HHHHHHHHHHHHHHHHHHHc
Confidence 34455667666 678999999999999999999999999999887542 44555555556555554433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-31 Score=243.55 Aligned_cols=370 Identities=13% Similarity=0.120 Sum_probs=268.2
Q ss_pred HHHHHHhccCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCC
Q 044122 29 WLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKG 107 (492)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g 107 (492)
-..+.++++++++...+++.|...+-. .--++.+.|.+.+| .++|.+|+|.+.+.+.+.|.+ +.++|.++||.
T Consensus 18 ~~~~~y~~~r~qif~~~fiGYa~fYl~-RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~---- 91 (448)
T COG2271 18 EIDKTYKRWRIQIFLSIFIGYAAFYLT-RKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS---- 91 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC----
Confidence 345677888999999999999544444 44557777777655 889999999999999999999 99999999996
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHH
Q 044122 108 YHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGS 187 (492)
Q Consensus 108 ~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 187 (492)
+-|.++..+.+++++..++++++++ ...+.++..+.+...+...+++...+..+. +++|||+..++++.+.++|.
T Consensus 92 -npr~fm~~gLilsai~nil~Gfs~s--~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wf--sr~eRG~~~siWn~shNiGG 166 (448)
T COG2271 92 -NPRYFMAFGLILSAIVNILFGFSPS--LFLFAVLWVLNGWFQGMGWPPCARTITHWF--SRKERGTWWSIWNTSHNIGG 166 (448)
T ss_pred -CCceeehHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcCCCcHHHHHHHHHc--CccccCceEEEehhhhhccc
Confidence 6688999999999999999999994 444556667788888888888888888888 44789999999999999999
Q ss_pred HHHHHhH--hHhhhcCChHHHHHHHhHhHHHH-HHhhheeeeccCCCccch------hhhhH-HH------HHHHHHHHH
Q 044122 188 LIGYSSS--GFFVHHLGHQGALGILAIPPTLL-IVLGFVIYETRATSHHFE------KKKAI-ES------VIFTMKGMC 251 (492)
Q Consensus 188 ~lg~~l~--~~l~~~~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~------~~~~~-~~------~~~~~~~~~ 251 (492)
.+.+++. +++..+.+||..|++.+++.++. ++.++..+++|++..-++ +..+. ++ ......-.+
T Consensus 167 al~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~ 246 (448)
T COG2271 167 ALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVK 246 (448)
T ss_pred chHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHH
Confidence 9999999 88999999999999999999888 666777887765432110 00000 00 000111245
Q ss_pred HhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CCchhh
Q 044122 252 KSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDY--PYRNLL 329 (492)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--~~~~~~ 329 (492)
.+++||.+|.+.+..++....-++.....+.|..+. .|+|....++..+..-.++++|.+++|+++||. |+|...
T Consensus 247 YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~---k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~ 323 (448)
T COG2271 247 YVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV---KGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM 323 (448)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---cCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence 689999999887665554444444444444455444 799999999999999999999999999999996 455544
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhcCCCCc--chhhhhhHHHHHHHHHHHHHHH---HHHHhcCCCChhHHHHHHHHHHH
Q 044122 330 FFAQLLYGISGMLDLIFILRWNLALGIPDS--FFVITEQCVSHIVSRLRWIPMI---VLSTRLCPRGIEGTFFALLMCID 404 (492)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~g~~~~~~ 404 (492)
.+.+.+....+++ .+ + ..++. +...+...+.+ -+.+.|.+ ....|.+|++-.|++.|+...+.
T Consensus 324 ~~i~~~~i~~~~~--~~------w-~~~~~~~~l~~~~l~~iG---f~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~ 391 (448)
T COG2271 324 ALIFMLLITASLV--LY------W-LAPNGSYLLDAILLFIIG---FLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFA 391 (448)
T ss_pred HHHHHHHHHHHHH--HH------H-cCCCccHHHHHHHHHHHH---HHHhhHHHHHHHHHhccccHhhccchhchhhhHH
Confidence 3333222222111 11 1 11211 22222211111 22333432 23479999999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHhhcc
Q 044122 405 IL-GSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 405 ~l-g~~i~~~l~g~l~~~~g~ 424 (492)
.+ |.+.+....|++.|.+|.
T Consensus 392 Yl~Ga~~a~~~~g~i~d~~gW 412 (448)
T COG2271 392 YLIGAALAGLPLGYIADTWGW 412 (448)
T ss_pred HHhhHHhcCCcceeeEecCCC
Confidence 98 889999999999887553
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=239.00 Aligned_cols=402 Identities=13% Similarity=0.148 Sum_probs=289.6
Q ss_pred cccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhcccc-ccCCCCchhHHHHHHHHHHHHHHHHHhc
Q 044122 54 GFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAF-PIKGYHRRPYFVIAGVLGLVSALIVALL 131 (492)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~-~~~g~~Rk~~l~~~~~~~~~~~~~~~~~ 131 (492)
++........+..+++|..|+++..+|.+..+..+--++ .|+.|.++||. +|+| ||||+++.+.+..++.+.++..+
T Consensus 25 ~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~G-rfRP~lL~g~ip~~i~~~l~F~~ 103 (467)
T COG2211 25 NFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWG-RFRPWLLWGAIPFAIVAVLLFIT 103 (467)
T ss_pred HHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccc-cccHHHHHHhHHHHHHHHHHHcC
Confidence 334445566788899999999999999998888887777 99999999999 6788 99999999999999998988888
Q ss_pred CCc----hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhh-------c
Q 044122 132 GKL----PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVH-------H 200 (492)
Q Consensus 132 ~~~----~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~-------~ 200 (492)
++. ....+.+..++.+++......+..++.++++++ ++||.++.++.+...++|.++...+...+.. .
T Consensus 104 p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d-~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~ 182 (467)
T COG2211 104 PDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD-PQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKA 182 (467)
T ss_pred CCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 853 344455666778899999999999999999864 5789999999999999998887766666553 4
Q ss_pred CChHHHHHHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhccccccc
Q 044122 201 LGHQGALGILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEG 279 (492)
Q Consensus 201 ~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (492)
.||+....+.++++++. +..++..+|+..+..+.++ +... +..+++...++||+++..++..++.........+.
T Consensus 183 ~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~-~~~~---~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~ 258 (467)
T COG2211 183 LGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT-GVKL---KLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSI 258 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc-cccc---cHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhh
Confidence 57888888888888777 4555667777654332211 0111 11234455778998887776555544433334445
Q ss_pred ceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCc
Q 044122 280 QFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDS 359 (492)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (492)
..||.++. +|.++............+.+++.++..++.+|+|+|+.+.++.++..+..+...+. +..+.
T Consensus 259 ~~yy~~y~---lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~--------~~~~~ 327 (467)
T COG2211 259 MVYYVTYV---LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT--------PAGSV 327 (467)
T ss_pred hheeEEEE---cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh--------cCcch
Confidence 56777777 67788888888888888888889999999999999999999877776654432221 11222
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhcC-------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-cch
Q 044122 360 FFVITEQCVSHIVSRLRWIPMIVLSTRLC-------PRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTD-YRN 431 (492)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~-~~~ 431 (492)
.+.+....+.++..+......+++++|.+ .++.+|..+|.+.++..+|.+++..+.|++.+..|+.++. .+.
T Consensus 328 ~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~~~Q~ 407 (467)
T COG2211 328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNVSAQS 407 (467)
T ss_pred HHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCC
Confidence 33343444555555555555556665544 4678899999999999999999999999999999987654 233
Q ss_pred hH-------HHHHHHHHHHHHHHHHHhhcCCCCcccccCchhhhhcCC
Q 044122 432 LW-------LVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLLRKNS 472 (492)
Q Consensus 432 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (492)
.. ....+.+++.+++++...++|.++++.+++.+|.++++.
T Consensus 408 ~~al~gI~~~~~~~Pa~l~l~~~i~~~~y~L~~~~~~~I~~eL~~r~~ 455 (467)
T COG2211 408 ASALFGIRFLFIILPALLLLLAAIIIFFYKLNEKMHKEIIEELEQRKA 455 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 22 222333444555555566778777666666666655443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=254.98 Aligned_cols=373 Identities=11% Similarity=0.050 Sum_probs=245.8
Q ss_pred HHHHHHHHHhccCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccc
Q 044122 26 PVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFP 104 (492)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~ 104 (492)
+.+-.++.+++..+.++..+++.| +...++....+...|.+.+| +|++.++.|++.+.+.+++.+ +|+.|+++||+
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~y~~r~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~- 91 (467)
T PRK09556 15 PLEVQRKMWFKPFMQSYLVVFIGY-LTMYLIRKNFKAAQNDMIST-YGLSTTELGMIGLGFSITYGVGKTLVGYYADGK- 91 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcChhhhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-
Confidence 333334555666777777788887 44445555666777776554 999999999999999999988 99999999996
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHH
Q 044122 105 IKGYHRRPYFVIAGVLGLVSALIVAL-----LGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLC 179 (492)
Q Consensus 105 ~~g~~Rk~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~ 179 (492)
+||+++..+.+++++..+.++. +++ ...+++.|++.|++.+...+...+++.++.++ ++|+++++++
T Consensus 92 ----g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~rg~a~gi~ 163 (467)
T PRK09556 92 ----NTKQFLPFLLILSAICMLGFGASLGSGSVS--LGLMIALWALSGFFQSTGGPCSYSTITRWTPR--RKRGRFLGFW 163 (467)
T ss_pred ----CccchHHHHHHHHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHcCc--cceeeeEEee
Confidence 6788887777777766665554 343 34466778899999888878888888998844 5799999999
Q ss_pred HHHHHHHHHHHHHhHhHhhhcC---ChHHHHHHHhHhHHHH-HHhhheeeeccCCCcc--chh----h-hhHHHH--HH-
Q 044122 180 AFCSGAGSLIGYSSSGFFVHHL---GHQGALGILAIPPTLL-IVLGFVIYETRATSHH--FEK----K-KAIESV--IF- 245 (492)
Q Consensus 180 ~~~~~~G~~lg~~l~~~l~~~~---gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~--~~~----~-~~~~~~--~~- 245 (492)
..+.++|.++++.+..++.... +||..|.+.+++.++. ++.+++.++++++... .++ . +..++. ++
T Consensus 164 ~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (467)
T PRK09556 164 NISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTD 243 (467)
T ss_pred ecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhcccccc
Confidence 9999999999998887776643 6999998888877766 3344445544322110 000 0 000000 00
Q ss_pred -HHHH-H-HHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 044122 246 -TMKG-M-CKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKD 322 (492)
Q Consensus 246 -~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r 322 (492)
...+ . ++.+++|.+|...+..++............+.|..+ .+|++..+.+...+...++.+++.++.|++.||
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~---~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr 320 (467)
T PRK09556 244 MTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQ---ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL 320 (467)
T ss_pred CcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 1 236788888877665555443332222222333323 378999999998888889999999999999999
Q ss_pred CCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 044122 323 YPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMC 402 (492)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 402 (492)
+++|+..........+. .....+.. ..+.........+.+........+......+..|++.+|++.|+.++
T Consensus 321 ~g~r~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~ 392 (467)
T PRK09556 321 ANGRRALVACIALALII-FTLGVYQH-------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGT 392 (467)
T ss_pred HCCCchHHHHHHHHHHH-HHHHHHHh-------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 99888765543322221 11111111 01111111111122211111111222455699999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHH
Q 044122 403 IDIL-GSLISKWGGGIVLH 420 (492)
Q Consensus 403 ~~~l-g~~i~~~l~g~l~~ 420 (492)
..++ |..++|.+.|.+.|
T Consensus 393 ~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 393 FAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHhHHHHhhhHHHHhc
Confidence 9996 77999999999999
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=245.12 Aligned_cols=372 Identities=12% Similarity=0.019 Sum_probs=248.1
Q ss_pred cchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHh---c
Q 044122 56 SGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVAL---L 131 (492)
Q Consensus 56 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~---~ 131 (492)
...+....+|.+.+| ++.++.+.|++.+.+.++..+ +++.|+++||+ +||+.+..+.++..++.+.++. .
T Consensus 32 ~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~~~ 105 (417)
T PRK10489 32 GLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-----DRKKLILLARGTCGLGFIGLALNAFL 105 (417)
T ss_pred HHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-----CCceEEEehHHHHHHHHHHHHHHHHc
Confidence 344556677777666 888999999999999999887 99999999996 6777777777766665554432 2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHh
Q 044122 132 GKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILA 211 (492)
Q Consensus 132 ~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~ 211 (492)
.+...+.++..+++.+++.+...+...+.+.+..++ ++|++..++.+...++|..+|+.+++.+.+..+|++.|++.+
T Consensus 106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~ 183 (417)
T PRK10489 106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR--ENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA 183 (417)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH--HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 222334455677888888887777778888888744 568899999999999999999999999999999999999887
Q ss_pred HhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCC
Q 044122 212 IPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGP 291 (492)
Q Consensus 212 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (492)
+..++..+..+.+||+++++++. ++ +.++..+..+..+++|.++...+..++... ........+.|..+. +
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~---~ 254 (417)
T PRK10489 184 AGTFITLLPLLRLPALPPPPQPR--EH---PLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEV---W 254 (417)
T ss_pred HHHHHHHHHHHhCCCCCCCCccc--cc---chHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc---c
Confidence 77666655566677654332111 11 111222334556677776555433332221 111111122222222 7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHH
Q 044122 292 AFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHI 371 (492)
Q Consensus 292 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (492)
|+++...|++.+...++.+++.++.+++.||.++++.+..+.++..+..+ .+.. .++.........+.+.
T Consensus 255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~g~ 324 (417)
T PRK10489 255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVG---LFGL-------MPMWILAVLCLALFGY 324 (417)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHH---HHHc-------cchHHHHHHHHHHHHH
Confidence 88999999999999999999999999999987766666655444333211 1111 1111122222233333
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHh
Q 044122 372 VSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIF 451 (492)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (492)
..+.......++.++..|++.||+++|+++...++|..+|+.+.|++.+..|... .....+++..+++.+...
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~-------~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVA-------SASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHHHHHHH
Confidence 3344344445677899999999999999999999999999999999999876421 123333444455555566
Q ss_pred hcCCCCcccc
Q 044122 452 LVPKGNHSNE 461 (492)
Q Consensus 452 ~~~~~~~~~~ 461 (492)
.+|+.|+.+.
T Consensus 398 ~~~~~~~~~~ 407 (417)
T PRK10489 398 VLGELRRFRQ 407 (417)
T ss_pred hccccccccc
Confidence 7777665443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=245.81 Aligned_cols=402 Identities=13% Similarity=0.111 Sum_probs=256.9
Q ss_pred ccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhcccc-ccCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 044122 55 FSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAF-PIKGYHRRPYFVIAGVLGLVSALIVALLG 132 (492)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~-~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~ 132 (492)
+........++.|++|.+|+++.++|.+..+..+--++ +|++|.++||. .++| ||||+++.+.+..+++.+++...+
T Consensus 20 ~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~G-rrrp~il~g~i~~~i~~~llf~~p 98 (473)
T PRK10429 20 FAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWG-KFKPWILIGTLANSVVLFLLFSAH 98 (473)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCC-CcchhHhhhhHHHHHHHHHHHcCC
Confidence 33445556678889998999999999999988887666 99999999998 5678 889999999999888877776544
Q ss_pred Cch----HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhh-------cC
Q 044122 133 KLP----IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVH-------HL 201 (492)
Q Consensus 133 ~~~----~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~-------~~ 201 (492)
+.+ ..++++..++..++.....++..++.+|++++ +++|.++.++.+.+.++|..+.+.+...+.. ..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~-~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~ 177 (473)
T PRK10429 99 LFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD-KREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGF 177 (473)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 322 22233344556777888888899999998854 4679999998778788876666555443322 23
Q ss_pred ChHHHHHHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccc
Q 044122 202 GHQGALGILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQ 280 (492)
Q Consensus 202 gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (492)
+|+....+.+++.++. .+.++..||++.++....+++++.+.+ +.++.+++||.++..++..++............
T Consensus 178 g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~ 254 (473)
T PRK10429 178 GFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLK---DIVALIYKNDQLSCLLGMALAYNIASNIINGFA 254 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHH---HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 5677777776666655 344455777643221110011111122 234456688888777665555544333333333
Q ss_pred eeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcc
Q 044122 281 FYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSF 360 (492)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (492)
.|+..+. .+ ++...+.+.....++.+++.++.+++.||+|+|+.+..+..+..+..+...... .....+.+
T Consensus 255 ~y~~~y~---~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 325 (473)
T PRK10429 255 IYYFTYV---IG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG-----LAAPHNAL 325 (473)
T ss_pred eeEEEEE---CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh-----ccCchhHH
Confidence 4555554 33 455667777777788899999999999999999998877654443322211110 00111122
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhcCC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch--
Q 044122 361 FVITEQCVSHIVSRLRWIPMIVLSTRLCP-------RGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRN-- 431 (492)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~-- 431 (492)
..+....+.+...+.......++++|.++ ++.+|..+|......+++.++++.+.|++.+..|++.+.-+.
T Consensus 326 ~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~~~~~q~~~ 405 (473)
T PRK10429 326 LIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYVPNVEQSAQ 405 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHH
Confidence 22223334444555555555667777755 567888999999999999999999999999999985432111
Q ss_pred ----h-HHHHHHHHHHHHHHHHHH-hhcCCCCcccccCchhhhhc
Q 044122 432 ----L-WLVILIRNVLRFATLGLI-FLVPKGNHSNELIPMDLLRK 470 (492)
Q Consensus 432 ----~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 470 (492)
+ +....+.+++.+++.+++ +++|-++++.++..++.+++
T Consensus 406 ~~~~i~~~~~~~p~~~~~~~~~~~~~~y~l~~~~~~~i~~~l~~~ 450 (473)
T PRK10429 406 TLLGMQFIMIGLPTLFFMITLVLYFRYYRLNGDFLRRIQIHLLDK 450 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHheeCCHHHHHHHHHHHHHH
Confidence 1 222333344445555544 46777666555445544333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=248.39 Aligned_cols=365 Identities=11% Similarity=0.065 Sum_probs=235.5
Q ss_pred cchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHH
Q 044122 39 SSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIA 117 (492)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~ 117 (492)
+.+.......+ +...++....+..+|.+.++ +|+|.++.|++.+.+.+++.+ +++.|+++||+ +||+++..+
T Consensus 22 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~~~~~ 94 (434)
T PRK11663 22 RHILITMYLGY-ALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-----NARYFMGIG 94 (434)
T ss_pred HHHHHHHHHHH-HHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-----CCchhHHHH
Confidence 34444444444 44444444445667777665 999999999999999999887 99999999996 778889999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHh
Q 044122 118 GVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFF 197 (492)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l 197 (492)
.++..++.++++++++.. .+++.+++.+++.+...+...+++.+..++ ++|++.+++.+.+.++|.++++.+++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~--~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~l 170 (434)
T PRK11663 95 LIATGIINILFGFSSSLW--AFALLWVLNAFFQGWGWPVCAKLLTAWYSR--TERGGWWAIWNTAHNVGGALIPLVVGAI 170 (434)
T ss_pred HHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHccchHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888887643 344556777777777667778888888743 5689999999999999999999999999
Q ss_pred hhcCChHHHHHHHhHhHHHH-HHhhheeeeccCCCccc-----hhh--hh-HHH--HHHHHHHHH--HhcccccchhhHH
Q 044122 198 VHHLGHQGALGILAIPPTLL-IVLGFVIYETRATSHHF-----EKK--KA-IES--VIFTMKGMC--KSIKLPQVWKPSL 264 (492)
Q Consensus 198 ~~~~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~-----~~~--~~-~~~--~~~~~~~~~--~~l~~~~~~~~~~ 264 (492)
.+.+|||+.|++.+++.++. ++..++++|++++.... +++ +. .++ .+...++.. ..+++|.+|...+
T Consensus 171 ~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (434)
T PRK11663 171 ALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSF 250 (434)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHH
Confidence 99999999999988776655 44455667654321100 000 00 000 000112221 2567787776655
Q ss_pred HHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CCchhhHHHHHHHHHhhhh
Q 044122 265 YMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDY--PYRNLLFFAQLLYGISGML 342 (492)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--~~~~~~~~~~~~~~~~~~~ 342 (492)
..++............+.|..+ .+|++..+.+...+...++.+++.++.|++.||+ ++|+.......+.......
T Consensus 251 ~~~~~~~~~~~~~~~~p~~l~~---~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~ 327 (434)
T PRK11663 251 SYVLVYVVRAAINDWGNLYMSE---TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHH
Confidence 4443332222222222223322 2789999999888888999999999999999998 3333322111111111111
Q ss_pred HHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044122 343 DLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLL 422 (492)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~ 422 (492)
.+.... ..............+...............+..|++.+|++.|+.++..++|..++|.+.|++.|+.
T Consensus 328 ~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~ 400 (434)
T PRK11663 328 SLWLMP-------FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW 400 (434)
T ss_pred HHHHcc-------cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc
Confidence 111110 1111111111111111111011112234578889999999999999999999999999999999987
Q ss_pred cc
Q 044122 423 HV 424 (492)
Q Consensus 423 g~ 424 (492)
|+
T Consensus 401 g~ 402 (434)
T PRK11663 401 HW 402 (434)
T ss_pred cc
Confidence 64
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-29 Score=243.78 Aligned_cols=358 Identities=14% Similarity=0.044 Sum_probs=244.5
Q ss_pred cCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHH
Q 044122 37 LHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFV 115 (492)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~ 115 (492)
++|.++....... +.++++....+...|.+.+| +|.++.+++++.+.+.++..+ ++++|+++||+ +||+.+.
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~ 84 (406)
T PRK11551 12 RLALTIGLCFLVA-LLEGLDLQSAGVAAPRMAQE-FGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-----GRKRILI 84 (406)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHH
Confidence 4555666666666 77777777777777777655 999999999999999999877 99999999996 6788888
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHh
Q 044122 116 IAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSG 195 (492)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~ 195 (492)
.+.++..++.+++.+.++.. .+++.+++.+++.+...+...+++.|..+ +++|++.+++.+.+..+|..+++.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~ 160 (406)
T PRK11551 85 VSVALFGLFSLATAQAWDFP--SLLVARLLTGVGLGGALPNLIALTSEAVG--PRLRGTAVSLMYCGVPFGGALASVIGV 160 (406)
T ss_pred HHHHHHHHHHHHHHHhccHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877644 35667888999988888888899999884 357899999999999999999999998
Q ss_pred HhhhcCChHHHHHHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcc
Q 044122 196 FFVHHLGHQGALGILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSI 274 (492)
Q Consensus 196 ~l~~~~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 274 (492)
.+.+..+||+.|++.+++.++. .+...++||+++...+.+++++.++. .+...+..+++..+......++......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (406)
T PRK11551 161 LAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPV---LRALFGEGRATATLLLWISYFFTLIVLY 237 (406)
T ss_pred HHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhh---HHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8888899999999887766655 34455678765432211101111111 1111111111222222111111111111
Q ss_pred cccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhc
Q 044122 275 STHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLAL 354 (492)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (492)
......+.+. ++.|+++.+.+.+.+...++.+++.++.+++.||+++|+.+..+.+...+..+ .+..
T Consensus 238 ~~~~~~p~~~----~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~---~~~~------ 304 (406)
T PRK11551 238 FLLNWLPSLL----VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLA---ALAA------ 304 (406)
T ss_pred HHHHHHHHHH----HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHh------
Confidence 1111112222 23688999999999999999999999999999999998887765443332211 1111
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044122 355 GIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLL 422 (492)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~ 422 (492)
.++.........+.++...........+..+.+|++++|++.|+.++..++|..++|.+.|.+.++.
T Consensus 305 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 305 -APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred -cCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 1111112222223333333334455667789999999999999999999999999999999998864
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=243.99 Aligned_cols=397 Identities=12% Similarity=0.048 Sum_probs=237.0
Q ss_pred cCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHH
Q 044122 37 LHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFV 115 (492)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~ 115 (492)
.+|.++...++.+.. ...........+| ++.++ |++..+.+++.+.+.+++.+ +|++|+++||+ +||++++
T Consensus 26 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-----g~k~~l~ 97 (452)
T PRK11273 26 LRWQIFLGIFFGYAA-YYLVRKNFALAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLP 97 (452)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----CCchhHH
Confidence 445554444444422 2222222334455 56676 99999999999999999887 99999999996 6788999
Q ss_pred HHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHH-HHHH
Q 044122 116 IAGVLGLVSALIVALLGK--LPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSL-IGYS 192 (492)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~-lg~~ 192 (492)
.+.++.+++.+++++.+. .....++..+++.+++.+...+.....+.++.+ +++|++.+++++.+.++|.. .+++
T Consensus 98 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~l 175 (452)
T PRK11273 98 AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS--QKERGGIVSVWNCAHNVGGGLPPLL 175 (452)
T ss_pred HHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCC--hHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999888888888777542 123345566778888877766666667777763 35699999999999998864 4555
Q ss_pred hHhHhhhcCChHHHHHHHhHhHHHH-HHhhheeeeccCCCccc--hh-hhh-------HHHHHHHHHH--HHHhcccccc
Q 044122 193 SSGFFVHHLGHQGALGILAIPPTLL-IVLGFVIYETRATSHHF--EK-KKA-------IESVIFTMKG--MCKSIKLPQV 259 (492)
Q Consensus 193 l~~~l~~~~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~--~~-~~~-------~~~~~~~~~~--~~~~l~~~~~ 259 (492)
++..+....|||+.|++.+++.++. ++..+++||++++.... ++ +++ .+..+...++ ....+|+|.+
T Consensus 176 ~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (452)
T PRK11273 176 FLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLL 255 (452)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHH
Confidence 4433434459999999988877665 55666777765431100 00 000 0000000112 1236678888
Q ss_pred hhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CchhhHHHHHHHH
Q 044122 260 WKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYP--YRNLLFFAQLLYG 337 (492)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~--~~~~~~~~~~~~~ 337 (492)
|...+..++............+.|..+. .|++..+.+.+.....++.+++.++.|++.||++ +|+...+......
T Consensus 256 ~~~~l~~~~~~~~~~~~~~~~P~~l~~~---~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 256 WYIAIANVFVYLLRYGILDWSPTYLKEV---KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 8766555444432222222223333332 6888888888888888899999999999999984 3432222111111
Q ss_pred HhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH-HHHHHH
Q 044122 338 ISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLI-SKWGGG 416 (492)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i-~~~l~g 416 (492)
...+.. ..... ..............+...............+.+|++.+|+++|+.+...++|..+ +|.+.|
T Consensus 333 ~~~~~~-~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g 405 (452)
T PRK11273 333 TIATIV-YWLNP------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 405 (452)
T ss_pred HHHHHH-HHHhc------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence 111111 11100 0111111111111111111111122234578999999999999999999988765 799999
Q ss_pred HHHHhhcccccCcchhHHHHHHHHHHHHHHHHHH--hhcCCCCcccc
Q 044122 417 IVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLI--FLVPKGNHSNE 461 (492)
Q Consensus 417 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 461 (492)
.+.|+.|+. . .+.++..+++++++.. +..+|+|++++
T Consensus 406 ~l~~~~g~~-----~---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 406 YTVDFFGWD-----G---GFMVMIGGSILAVILLIVVMIGEKRHHEE 444 (452)
T ss_pred HHHHHhcch-----H---HHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 999987743 1 3434444444444433 34555555544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=243.45 Aligned_cols=355 Identities=16% Similarity=0.076 Sum_probs=249.7
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+...++....+..+|.+.+| +|.++.+.+++.+.+.++..+ .|++|+++||+ +||+.++.+.++..++.+++.
T Consensus 20 ~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~~~~~~~~~~ 93 (471)
T PRK10504 20 FMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-----GVRNIFFTAIVLFTLGSLFCA 93 (471)
T ss_pred HHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHH
Confidence 55666666777778888766 999999999999999888776 99999999996 678888888888888878777
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
++++.. .++..+++++++.+...+...+++.+..++ ++|++..++.....++|..+||.+++.+.++.|||+.|++
T Consensus 94 ~~~~~~--~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~ 169 (471)
T PRK10504 94 LSGTLN--ELLLARVLQGVGGAMMVPVGRLTVMKIVPR--EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI 169 (471)
T ss_pred HhCCHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence 776543 356778999999998888888888888743 5688999999999999999999999999999999999998
Q ss_pred HhHhHHHH-HHhhheeeeccCCCccchhh-----------------hhH----HH--H----------------HHHH--
Q 044122 210 LAIPPTLL-IVLGFVIYETRATSHHFEKK-----------------KAI----ES--V----------------IFTM-- 247 (492)
Q Consensus 210 ~~~~~~~~-~~~~~~~~e~~~~~~~~~~~-----------------~~~----~~--~----------------~~~~-- 247 (492)
......+. .+.....|+.+....+.+.. +.. .. . ++..
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (471)
T PRK10504 170 NIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNN 249 (471)
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 87666555 33334444433221111000 000 00 0 0000
Q ss_pred --HHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 044122 248 --KGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPY 325 (492)
Q Consensus 248 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 325 (492)
..-.+++|||.++......++............++|..+. .|.++.+.+++.....++.+++.++.+++.||+++
T Consensus 250 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~ 326 (471)
T PRK10504 250 RALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG---LGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGY 326 (471)
T ss_pred CCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 0012467788877766655554443222222234444443 68899999999888888889999999999999999
Q ss_pred chhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 044122 326 RNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDI 405 (492)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 405 (492)
|+.+..+..+..+..+... +.. .....+.......+.+...+....+...+..+.+|++.+|+++|+.++..+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 399 (471)
T PRK10504 327 RRVLVATTLGLALVSLLFM-LVA------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQ 399 (471)
T ss_pred hHHHHHHHHHHHHHHHHHH-hcc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHH
Confidence 9998877665554322211 110 001111111122233344555666777788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 044122 406 LGSLISKWGGGIVLHLLHVT 425 (492)
Q Consensus 406 lg~~i~~~l~g~l~~~~g~~ 425 (492)
+|..+|+.++|.+.+..|+.
T Consensus 400 ~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 400 LSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999988763
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=237.09 Aligned_cols=366 Identities=13% Similarity=0.060 Sum_probs=235.8
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+..++..+...+.+|.++++++|.|.+++|++.+.+.+...+ +|++|+++||++ +||++++.+.++..++.++++
T Consensus 7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g----~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQG----DRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CchHHHHHHHHHHHHHHHHHH
Confidence 555566667777888888888999999999999999887665 999999999962 455556666666666767777
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
+++++. .+++.+++.+.+.+...+...++..|..+++++.++...+....+.++|.++|+.+++++.+..|||+.|++
T Consensus 83 ~~~~~~--~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~ 160 (375)
T TIGR00899 83 WNRNYF--LLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLT 160 (375)
T ss_pred hcchHH--HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHH
Confidence 777643 344445555555555566667777776643222222235777778899999999999999999999999999
Q ss_pred HhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCC
Q 044122 210 LAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPK 288 (492)
Q Consensus 210 ~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (492)
.+++.++. .+.++++||+++++++++++ .+.++.+++|.++......++............+.+..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 229 (375)
T TIGR00899 161 AALAFVLCGVLVWLFLPSYPRGAPGALTR----------LEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHE- 229 (375)
T ss_pred HHHHHHHHHHHHHHhCCCcccCcccccCc----------chhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-
Confidence 98877666 44455678765433221100 1123345666665444333322221111111122232222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+|.++.+.+.+........+++.++.+++.||+++|+.+..+.....+... .+....+ .+..+....+
T Consensus 230 --~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~ 297 (375)
T TIGR00899 230 --LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYT---GLAADNS-------LWALLMLQLL 297 (375)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHH---HHHHHHH-------HHHHHHHHHH
Confidence 688999999887777777788889999999999999887766443332211 1111001 1112222233
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLG 448 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (492)
.++..+........+.++..|+ ++++++|+++...++|..++|.+.|.+.+..|+. ..+.+.+++.+++.+
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~--------~~~~~~~~~~~~~~~ 368 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYH--------AVYWFAIVMLIVALF 368 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------hHHHHHHHHHHHHHH
Confidence 3444444444555666787775 5679999999999999999999999999977632 244455555555555
Q ss_pred HHhhcC
Q 044122 449 LIFLVP 454 (492)
Q Consensus 449 ~~~~~~ 454 (492)
...+++
T Consensus 369 ~~~~~~ 374 (375)
T TIGR00899 369 CLLLIK 374 (375)
T ss_pred HHheec
Confidence 555443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=243.10 Aligned_cols=392 Identities=13% Similarity=0.032 Sum_probs=238.1
Q ss_pred hhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcC--hH--HHHHH--HHHhhhhhhh-hhHHhhhccccccCCCCchhH
Q 044122 41 FIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQ--PS--TVQIY--IGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPY 113 (492)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--~~--~~g~~--~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~ 113 (492)
.+....+.. +.++++...++...|..- ++++.+ +. .++.. .++..+++.+ ++++|+++||+ +||+.
T Consensus 17 ~~~~~~~g~-~~~~~d~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-----Grr~~ 89 (490)
T PRK10642 17 AITAASLGN-AMEWFDFGVYGFVAYALG-KVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-----GRQKI 89 (490)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHH-HhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHH
Confidence 334444455 677788777777776554 446433 22 12221 3556677777 89999999996 78999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchH------HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHH
Q 044122 114 FVIAGVLGLVSALIVALLGKLPI------ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGS 187 (492)
Q Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 187 (492)
+..+.++++++.+++++++++.. .++++.|+++|+|.+...+...+++.|+.++ ++|++..++...+..+|.
T Consensus 90 l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~--~~Rg~~~~~~~~~~~~G~ 167 (490)
T PRK10642 90 LAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPD--RKRGFMGSWLDFGSIAGF 167 (490)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHH
Confidence 99999999999999999998653 2367789999999999999999999999854 568999998888888888
Q ss_pred HHHHHhHhHhh--------hcCChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhh-h-hHHHHH-HHHHHHHHhccc
Q 044122 188 LIGYSSSGFFV--------HHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKK-K-AIESVI-FTMKGMCKSIKL 256 (492)
Q Consensus 188 ~lg~~l~~~l~--------~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~-~~~~~~-~~~~~~~~~l~~ 256 (492)
++|+.+...+. ..+|||++|++.+++.++..+...++||+++.....++. + ..+... +....+++.+++
T Consensus 168 ~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (490)
T PRK10642 168 VLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATK 247 (490)
T ss_pred HHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHH
Confidence 88876655432 268999999997765555455556788875432111000 0 000000 000112233332
Q ss_pred -ccchhhHH-HHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHH
Q 044122 257 -PQVWKPSL-YMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQL 334 (492)
Q Consensus 257 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~ 334 (492)
+..+.... ..++.....+......+.+... .+|++....+.......++.+++.++.+++.||+|+|+.+..+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 324 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSH---NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSV 324 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 11111111 1111112122221222223222 268888777777777888899999999999999999998776654
Q ss_pred HHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 044122 335 LYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWG 414 (492)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l 414 (492)
...+..+..+.... .......+....+.++..+........+..+.+|++.||++.|+......+++.++|.+
T Consensus 325 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i 397 (490)
T PRK10642 325 ALFVLAIPAFILIN-------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTL 397 (490)
T ss_pred HHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 33322221111111 01111111122222333333344455566789999999999998666677778899999
Q ss_pred HHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 044122 415 GGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNH 458 (492)
Q Consensus 415 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (492)
.|++.+..+. +.. .+.+..+..+++++..+++||+++
T Consensus 398 ~g~l~~~~~~----~~~---~~~~~~~~~~i~~~~~~~~pes~~ 434 (490)
T PRK10642 398 AAWLVESTQN----LMM---PAYYLMVVAVIGLITGVTMKETAN 434 (490)
T ss_pred HHHHHHHhCC----chH---HHHHHHHHHHHHHHHHHHhccccC
Confidence 9999875431 111 112223334444444556677654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=236.62 Aligned_cols=352 Identities=15% Similarity=0.094 Sum_probs=249.3
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+...+........+|.+..| ++.+..+++++.+++.++..+ +|++|+++||+ +||+.++.+.++..++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 9 LISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRY-----DRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-----chhHHHHHHHHHHHHHHHHHH
Confidence 33344455666777888776 899999999999999999877 99999999996 678888888887777766666
Q ss_pred hcC---CchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHH
Q 044122 130 LLG---KLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGA 206 (492)
Q Consensus 130 ~~~---~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~ 206 (492)
+.+ +.+.+.+++.+++.+++.+...+...+++.|..++ ++|++..++.+.+..+|.++|+.+++++.++.|||+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~ 160 (365)
T TIGR00900 83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE--EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWA 160 (365)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 554 11334466778889999999999999999999854 5799999999999999999999999999999999999
Q ss_pred HHHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhccccc-ccceeeec
Q 044122 207 LGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTH-EGQFYWAT 285 (492)
Q Consensus 207 f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 285 (492)
|++.++..++..+..+.++++++++++.+ +.+++..++..+..+..+++|.++...+..++......... ...+++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (365)
T TIGR00900 161 IWVDAVGFAISALLIVSVRIPELAASEIQ-ALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQS 239 (365)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCcccc-ccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99887766655443333332221111110 10001112223445667788888766655544443322221 22334443
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhh
Q 044122 286 DPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITE 365 (492)
Q Consensus 286 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (492)
+. +|.++.+.+.+.....++.+++.++.+++.||.++++.+..+.....+.... ..+.. ++.+..+..
T Consensus 240 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~ 307 (365)
T TIGR00900 240 KY---LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV-VGLTP--------PNFPLFLVL 307 (365)
T ss_pred HH---hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-HHhhc--------hhHHHHHHH
Confidence 33 6889999999999999999999999999999999888877654433332111 11111 012222333
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 366 QCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
..+.++..+........+..+.+|++++|+++|+.++..+++..+++.++|.+.|+.|
T Consensus 308 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 308 WFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455555566666677788999999999999999999999999999999999998754
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=248.49 Aligned_cols=394 Identities=15% Similarity=0.089 Sum_probs=256.7
Q ss_pred hccCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhH
Q 044122 35 SQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPY 113 (492)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~ 113 (492)
.++.|.+++.+.+.+ +..+++...++..+|.+.++ +|++..+.+++.+++.++.++ ++++|+++||+ +||+.
T Consensus 162 ~~~~~~l~~i~~l~~-~~~g~d~~~is~ilp~i~~~-~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-----GRR~~ 234 (742)
T TIGR01299 162 GRFQWALFFVLGLAL-MADGVEVFVVGFVLPSAEKD-LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-----GRKQC 234 (742)
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHH
Confidence 345666666666666 66677766677777766555 999999999999999999888 99999999996 78888
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHh
Q 044122 114 FVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSS 193 (492)
Q Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l 193 (492)
++++.++.+++.+++++++++. .+++++++.+++.+...+...+++.|..+. +.|++..++...+..+|.++++.+
T Consensus 235 lii~lil~~i~~ll~afa~s~~--~llv~R~l~G~g~g~~~p~~~~~isE~~p~--~~Rg~~~g~~~~~~~iG~ila~~l 310 (742)
T TIGR01299 235 LLICLSVNGFFAFFSSFVQGYG--FFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ--EKRGEHLSWLCMFWMIGGIYAAAM 310 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889888888888888887643 466779999999998889999999999854 568999999999999999999988
Q ss_pred HhHhhhc-------------CChHHHHHHHhHhHHHHHHhhheeeeccCCCccc---hh-------------h---hhHH
Q 044122 194 SGFFVHH-------------LGHQGALGILAIPPTLLIVLGFVIYETRATSHHF---EK-------------K---KAIE 241 (492)
Q Consensus 194 ~~~l~~~-------------~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~---~~-------------~---~~~~ 241 (492)
+..+... .+||+.+++.+++.++.++..+++||+|+..... ++ + +..+
T Consensus 311 a~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~ 390 (742)
T TIGR01299 311 AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEK 390 (742)
T ss_pred HHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhH
Confidence 7666543 3689999888877776677778899987531110 00 0 0000
Q ss_pred -----HHHH-------------------------------HHHHHHHhcccccchhhHHHHhhh----hhhcccccccce
Q 044122 242 -----SVIF-------------------------------TMKGMCKSIKLPQVWKPSLYMFLS----FAVSISTHEGQF 281 (492)
Q Consensus 242 -----~~~~-------------------------------~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 281 (492)
..+. .+.+++++++ +..++..+...+. .+.++++...++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~-~~~~~~tl~l~~~wf~~~~~yygl~~w~P 469 (742)
T TIGR01299 391 VFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFN-PEVREITIKLMGVWFTLSFGYYGLSVWFP 469 (742)
T ss_pred HHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0012233333 3332222111111 111111111100
Q ss_pred eee-----------------------------------------------------------------------------
Q 044122 282 YWA----------------------------------------------------------------------------- 284 (492)
Q Consensus 282 ~~~----------------------------------------------------------------------------- 284 (492)
...
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 549 (742)
T TIGR01299 470 DMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNC 549 (742)
T ss_pred HHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhcc
Confidence 000
Q ss_pred ---------ccC------------------CCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhH
Q 044122 285 ---------TDP------------------KAGPAFS-------QEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLF 330 (492)
Q Consensus 285 ---------~~~------------------~~~~g~~-------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 330 (492)
++. ..+...+ .........+..++.+++.++.+++.||+|+|+++.
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~ 629 (742)
T TIGR01299 550 TFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLA 629 (742)
T ss_pred chhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 000 0000000 011233346778899999999999999999999988
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q 044122 331 FAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLI 410 (492)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 410 (492)
.+.++.+++.++. .+.. .....+....+.+++.+........+++|.+|++.||+++|+.++...+|..+
T Consensus 630 ~~~~lsai~~ll~-~~~~---------s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaii 699 (742)
T TIGR01299 630 GSMVLSCISCFFL-SFGN---------SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVL 699 (742)
T ss_pred HHHHHHHHHHHHH-HHHc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 7766655543221 1111 11112222223333334445556678899999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 044122 411 SKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGNHS 459 (492)
Q Consensus 411 ~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (492)
+|.++|.+.+... ...+.+++++.+++.++..++||++++
T Consensus 700 gp~i~g~L~~~~~---------~~pf~i~a~~lll~~ll~~~LPET~~~ 739 (742)
T TIGR01299 700 GILIFGSFVGITK---------AAPILFASAALACGGLLALKLPDTRGQ 739 (742)
T ss_pred HHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 9999998876421 224445555556666666778988765
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=243.00 Aligned_cols=363 Identities=12% Similarity=-0.019 Sum_probs=258.7
Q ss_pred cchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHH
Q 044122 39 SSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIA 117 (492)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~ 117 (492)
|..+..+.+.+ |...++....+.++|.+.+| +|.+..+.+|+.+.+.++... +|++|+++||+ +||+.++.+
T Consensus 5 ~~~~~~~~~~~-~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-----Grk~~l~~~ 77 (495)
T PRK14995 5 WLTLVIIVLVY-IPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-----GFKRLLMLG 77 (495)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHH
Confidence 34556666666 88888888999999988766 999999999999999999876 99999999996 789999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHh
Q 044122 118 GVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFF 197 (492)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l 197 (492)
.++..++.++++++++.. .+++.|+++|+|.+...+.....+.+... ++++|++.+++......+|..+||.+++++
T Consensus 78 ~~~~~~~~~~~~~a~~~~--~li~~r~l~G~g~~~~~~~~~~~l~~~~~-~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l 154 (495)
T PRK14995 78 GTLFGLASLAAAFSPTAS--WLIATRALLAIGAAMIVPATLAGIRATFT-EEKQRNMALGVWAAVGSGGAAFGPLVGGIL 154 (495)
T ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988654 46678899999998877766666655442 235689999999999999999999999999
Q ss_pred hhcCChHHHHHHHhHhHHHH-HHhhheeeeccCCCccchh-hhhH----------HHHHH--------------------
Q 044122 198 VHHLGHQGALGILAIPPTLL-IVLGFVIYETRATSHHFEK-KKAI----------ESVIF-------------------- 245 (492)
Q Consensus 198 ~~~~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~-~~~~----------~~~~~-------------------- 245 (492)
.++.|||+.|++...+.++. .+..+++||++.++.++.+ .... ...++
T Consensus 155 ~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (495)
T PRK14995 155 LEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGAL 234 (495)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 99999999999987776665 4455667765432211100 0000 00000
Q ss_pred -----HHHHH--------HHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 044122 246 -----TMKGM--------CKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIG 312 (492)
Q Consensus 246 -----~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 312 (492)
...+. .+.+|+|.++...+..++............+.|.+.. +|+++.+.|.......++..++
T Consensus 235 ~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v---~g~s~~~ag~~~~~~~~~~~~~ 311 (495)
T PRK14995 235 LLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV---HGLSPLEAGMFMLPVMVASGFS 311 (495)
T ss_pred HHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHH
Confidence 00011 2456677665554444333322221111112222222 6899999999999999999999
Q ss_pred HHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCh
Q 044122 313 VLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGI 392 (492)
Q Consensus 313 ~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (492)
.++.|++.||+++|+.+..+.++..+.... +.... . ....+.......+.++..+....+......+.+|+++
T Consensus 312 ~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~-l~~~~-----~-~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~ 384 (495)
T PRK14995 312 GPIAGILVSRLGLRLVATGGMALSALSFYG-LAMTD-----F-STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK 384 (495)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHH-HHHhc-----C-CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh
Confidence 999999999999988777665544432211 11111 0 1111222233445555666667777778888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 393 EGTFFALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 393 ~g~~~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
+|.+.++.++..++|..+|+.+.|.+.+.
T Consensus 385 ~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 385 AAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999874
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=248.78 Aligned_cols=365 Identities=11% Similarity=0.054 Sum_probs=235.1
Q ss_pred CcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHH
Q 044122 38 HSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVI 116 (492)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~ 116 (492)
+|+....+...+ +.++++.......+|.+. +++|++..+.+++.+.+.++..+ +++.|+++||+ +||+.++.
T Consensus 18 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~ 90 (496)
T PRK03893 18 QWKAFSAAWLGY-LLDGFDFVLITLVLTEVQ-GEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-----GRRLAMVI 90 (496)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHH
Confidence 445555666666 666777777776666655 45999999999999999998877 99999999996 78888889
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhH
Q 044122 117 AGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGF 196 (492)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~ 196 (492)
+.++..++.+++++.++.. .+++.+++.+++.+...+...+++.|..++ ++|++..++...+.++|..+++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~ 166 (496)
T PRK03893 91 SIVLFSVGTLACGFAPGYW--TLFIARLVIGMGMAGEYGSSATYVIESWPK--HLRNKASGFLISGFSIGAVVAAQVYSL 166 (496)
T ss_pred HHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888877543 456678888998888888888888888843 568999999999999999999999999
Q ss_pred hhhcCChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHH-------HHH----------HHHhcc----
Q 044122 197 FVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFT-------MKG----------MCKSIK---- 255 (492)
Q Consensus 197 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-------~~~----------~~~~l~---- 255 (492)
+.++.|||+.|++.++..++..+....+||+++.+.+.++++..++..+. ... ....+.
T Consensus 167 l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (496)
T PRK03893 167 VVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQ 246 (496)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999875444433333444556543211111000000000000 000 000000
Q ss_pred -----------------------cccchhhHHHHhhhhhhccccc----ccceeeeccCCCCCCCCHHHHHHHHHHHHHH
Q 044122 256 -----------------------LPQVWKPSLYMFLSFAVSISTH----EGQFYWATDPKAGPAFSQEFVGVIYALGAVA 308 (492)
Q Consensus 256 -----------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 308 (492)
++..+................. ...+.|.. +++|++..+.+.+.+...++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~---~~~g~~~~~~g~~~~~~~~~ 323 (496)
T PRK03893 247 NAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLK---TDLGYDPHTVANVLFFSGFG 323 (496)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHH---hhcCCCHHHHHHHHHHHHHH
Confidence 0000000000000000000000 11122222 23789999999999999999
Q ss_pred HHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 044122 309 SIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLC 388 (492)
Q Consensus 309 ~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (492)
.+++.++.+++.||+++|+.+..+..+..+..+. ..... ....+.......+..............+.++.+
T Consensus 324 ~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (496)
T PRK03893 324 AAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIP-VFAIG-------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF 395 (496)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-Hhhcc-------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC
Confidence 9999999999999999998877664443322111 11100 011111111111111111112233445678999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 389 PRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 389 ~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
|++++|+++|+.++..++|..++|.++|.+.++.|+
T Consensus 396 ~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~ 431 (496)
T PRK03893 396 DTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDL 431 (496)
T ss_pred CHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCCh
Confidence 999999999999999999999999999999998764
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-27 Score=235.69 Aligned_cols=393 Identities=12% Similarity=0.091 Sum_probs=251.3
Q ss_pred ccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhcccc-ccCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 044122 55 FSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAF-PIKGYHRRPYFVIAGVLGLVSALIVALLG 132 (492)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~-~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~ 132 (492)
....+....+..+++|..|+++..+|.+..+..+--++ +|+.|.++||. .++| ||||+++.+.+..+++.+++...|
T Consensus 23 ~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~G-r~rp~il~g~i~~~i~~~llf~~p 101 (460)
T PRK11462 23 IIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWG-KFRPWVLFGALPFGIVCVLAYSTP 101 (460)
T ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCC-CcchhHhHHHHHHHHHHHHHHhCC
Confidence 33445555678888899999999999999888887777 99999999999 6678 999999999988888877777666
Q ss_pred Cch----HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhc-------C
Q 044122 133 KLP----IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHH-------L 201 (492)
Q Consensus 133 ~~~----~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~-------~ 201 (492)
+.+ ..++.+..++..++.....++..++.+|++++ ++||+++.++...+.++|..+++.+...+... .
T Consensus 102 ~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d-~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~ 180 (460)
T PRK11462 102 DLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND-PTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPL 180 (460)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 432 22344445566788888888999999999864 57899999999999999988887776655443 3
Q ss_pred ChHHHHHHHhHhHHHHH-HhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccc
Q 044122 202 GHQGALGILAIPPTLLI-VLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQ 280 (492)
Q Consensus 202 gw~~~f~i~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (492)
||+....+.+++.++.. +.+...+|+++++++ + .+. .+.++..++||.++..+...++............
T Consensus 181 g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~---~---~~~---~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~ 251 (460)
T PRK11462 181 GFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPT---T---TSM---REDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAM 251 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcceeccCCCcc---C---CCH---HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHh
Confidence 57777777777666653 344445665432211 1 111 2346677788887766544333333222222334
Q ss_pred eeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcc
Q 044122 281 FYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSF 360 (492)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (492)
.||.++. .|. +...+.+.....++.+++.++++++.||+++|+....+.....+..+. ..+.. .....
T Consensus 252 ~y~~~y~---~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~-~~~~~-------~~~~~ 319 (460)
T PRK11462 252 MYYVTWI---LGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLA-MFFVP-------MQASI 319 (460)
T ss_pred hhhhhhh---cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH-HHHhc-------hhHHH
Confidence 4666555 343 334455666778888999999999999999888766544433322222 11111 01111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhcCC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCc----
Q 044122 361 FVITEQCVSHIVSRLRWIPMIVLSTRLCP-------RGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDY---- 429 (492)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~---- 429 (492)
..+....+.+...+.......++..|..+ ++.+|..++...+..++|.++++.++|.+.+..|+..+.-
T Consensus 320 ~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~~~~~~q~~ 399 (460)
T PRK11462 320 TMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDAAEKAQNS 399 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCH
Confidence 11111122232323333333445555544 6677888899999999999999999999999988854211
Q ss_pred ch---h-HHHHHHHHHHHHHHHHHHh-hcCCCCcccccCchhhhhc
Q 044122 430 RN---L-WLVILIRNVLRFATLGLIF-LVPKGNHSNELIPMDLLRK 470 (492)
Q Consensus 430 ~~---~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 470 (492)
.. + ..+..+.+++.+++.+++. +.|-++++.++..+|.+++
T Consensus 400 ~~~~~i~~~~~~~P~~~~~~~~~~~~~~y~l~~~~~~~i~~~l~~~ 445 (460)
T PRK11462 400 ATISIIIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLAQG 445 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 11 1 1222333444455555553 5677666555444444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=237.05 Aligned_cols=381 Identities=14% Similarity=0.125 Sum_probs=250.1
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhcccc-ccCCCCchhHHHHHHHHHHHHHHHHHhcCCch-
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAF-PIKGYHRRPYFVIAGVLGLVSALIVALLGKLP- 135 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~-~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~- 135 (492)
.....++++++|++|++++++|.+.++..+..++ +|+.|.++||+ .|+| ||||+++.+.+..+++.+++...|+.+
T Consensus 27 ~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~G-rrrp~il~~~~~~~i~~~l~f~~p~~~~ 105 (444)
T PRK09669 27 TVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHG-QFRPYLLWFAIPFGVVCLLTFYTPDFGA 105 (444)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCC-CcchhHHHHHHHHHHHHHHHHhCCCCCc
Confidence 3455678888899999999999999999988777 99999999999 4567 899999999888888776666666432
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhh-------cCChHH
Q 044122 136 ---IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVH-------HLGHQG 205 (492)
Q Consensus 136 ---~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~-------~~gw~~ 205 (492)
..++.+..++.+.+.....++..++.+|+.++ +++|.++.++.....++|..+++.+...+.. ..||+.
T Consensus 106 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~-~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~ 184 (444)
T PRK09669 106 TGKIIYACVTYILLSLVYTAINVPYCAMPGAITND-PRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFY 184 (444)
T ss_pred chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence 22333334455566666777788899998754 3678899998888888888888766554433 346888
Q ss_pred HHHHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeee
Q 044122 206 ALGILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWA 284 (492)
Q Consensus 206 ~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (492)
.+.+.+++.++. .+.++..+|+++++.++ + . +..+++++.+|||.++...+..++.............||.
T Consensus 185 ~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~--~---~---~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 256 (444)
T PRK09669 185 AMMVMGLLGVVLFFCCFFMTKERYTPEVDN--S---S---SVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYV 256 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEecCCCCcC--C---C---CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheee
Confidence 888887777666 44455566654322111 1 1 1234567778999988776554444332222223334555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhh
Q 044122 285 TDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVIT 364 (492)
Q Consensus 285 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (492)
.+. .+. +...+.+.....+..+++.++++++.||+++|+....+.+...+..+.. .+.. ..+.+..+.
T Consensus 257 ~~~---~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~ 324 (444)
T PRK09669 257 NYV---LLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALI-FFIP-------PSNVWLIFA 324 (444)
T ss_pred eee---cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHhC-------cchHHHHHH
Confidence 554 332 3344455556678888999999999999999998877655444322211 1111 111122222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCc-ch-----
Q 044122 365 EQCVSHIVSRLRWIPMIVLSTRLCP-------RGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDY-RN----- 431 (492)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~-~~----- 431 (492)
...+.++..+.......++++|.++ ++.+|..+|..++..++|.++|+.++|.+.+..|++.+.- +.
T Consensus 325 ~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~~~~~~q~~~~~~ 404 (444)
T PRK09669 325 LNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYVGGAAVQSASVLT 404 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHH
Confidence 3334455555555556667777764 4567889999999999999999999999999999853321 11
Q ss_pred -h-HHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 044122 432 -L-WLVILIRNVLRFATLGLIFLVPKGNHSNE 461 (492)
Q Consensus 432 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (492)
+ .....+.+++.+++++.++++|-+|++.+
T Consensus 405 ~i~~~~~~~p~~~~~~~~~~~~~y~l~~~~~~ 436 (444)
T PRK09669 405 TINLLFTVIPGVLFAGMAIILNFYKLNDARVE 436 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 1 22233344445566666667787665543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-27 Score=229.80 Aligned_cols=361 Identities=15% Similarity=0.146 Sum_probs=237.6
Q ss_pred hhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhhhhHHhhhcccc--ccCCCCchhHHHHHHH
Q 044122 42 IFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAF--PIKGYHRRPYFVIAGV 119 (492)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~--~~~g~~Rk~~l~~~~~ 119 (492)
...+..+| +.||+..++..+.+|.+++| .|.|.+++|.+ +...+++..+++++++.||+ ++.| +||.+++...+
T Consensus 3 ~~~~~~ly-~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~-~~~~l~~~~~~l~~p~~~~~~~~~~g-~r~~~i~~~~~ 78 (390)
T TIGR02718 3 VITLGLLY-LSQGIPIGLAMDALPTLLRE-DGAPLTALAFL-PLVGLPWVVKFLWAPLVDNWWSWRLG-RRRSWVLPMQC 78 (390)
T ss_pred HHHHHHHH-HHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHH-HHHHHHHHHHHHHHHHHhccccccCC-cchhHHHHHHH
Confidence 45677788 99999999999999999988 79999999987 55566677777777777775 3445 67776665544
Q ss_pred HHHHHHHHHH-hcCCch-HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHh
Q 044122 120 LGLVSALIVA-LLGKLP-IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFF 197 (492)
Q Consensus 120 ~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l 197 (492)
+..++....+ +.+... ....+.......+..+..++..+++..|..++ ++++...+....+..+|.++|+...+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~--~~~~~~~~~~~~g~~lG~~~g~~~~~~l 156 (390)
T TIGR02718 79 LVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNG--RTLAKGNAVQIAGVMIGFFGGGAGTLVL 156 (390)
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333 212211 11223334555677778888888887776533 4456677777778889999999888899
Q ss_pred hhcCChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhccccc
Q 044122 198 VHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTH 277 (492)
Q Consensus 198 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (492)
.+++|||..|++.+++.++..+..++++|+++++++.+ + +..++.++.+|+|.++......++.........
T Consensus 157 ~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 228 (390)
T TIGR02718 157 FGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAP-L-------ARRASLFRFFRRPLAWSLLALALLSAMTAVSGF 228 (390)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccc-h-------hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887776444444544432211110 1 112346678888988776665555443222222
Q ss_pred ccceeeeccCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 044122 278 EGQFYWATDPKAGPAFSQEFVGVIYALGA-VASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGI 356 (492)
Q Consensus 278 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (492)
.....|.. +.|+++.++|.+..... ...+++.++.|++.||+++|+.+..+..+..+..+..... . . ....
T Consensus 229 ~~~~~~l~----~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-~--~-~~~~ 300 (390)
T TIGR02718 229 GLSKLYLV----DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQ-A--A-FWLA 300 (390)
T ss_pred HHhhHHHH----hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H--H-cccC
Confidence 22222222 26999999999887665 5677889999999999999998877655443222211111 1 1 1111
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 357 PDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPR-GIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
+.....+....+..+..+...........+..++ +.+|+.+++.++..++|..++|.++|.++|+.|+
T Consensus 301 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~ 369 (390)
T TIGR02718 301 PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGY 369 (390)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1211222222233344555556666666666665 8899999999999999999999999999998874
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=238.26 Aligned_cols=365 Identities=12% Similarity=0.068 Sum_probs=246.7
Q ss_pred ccCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHH
Q 044122 36 QLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYF 114 (492)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l 114 (492)
..+|+....+.+.+ +.++++....+...|.+. +++|.+.++++++.+++.++..+ +|+.|+++||+ +||+.+
T Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----g~r~~~ 80 (405)
T TIGR00891 8 RAQWNAFSAAWLGW-LLDAFDFFLVALVLAEVA-GEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-----GRRLPM 80 (405)
T ss_pred cccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHH
Confidence 35666667777777 777787777777777665 45999999999999999999887 99999999996 678888
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhH
Q 044122 115 VIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSS 194 (492)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~ 194 (492)
+.+.++..++.+++++.+++. .++..+++.|++.+...+...+++.|..++ ++|+++.++.+.+..+|.++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~--~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~l~ 156 (405)
T TIGR00891 81 VTSIVLFSAGTLACGFAPGYI--TMFIARLVIGIGMGGEYGSSAAYVIESWPK--HLRNKASGLLISGYAVGAVVAAQVY 156 (405)
T ss_pred HHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHhhhhhhhHHHHHHHHHhCCh--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887654 356678999999998888889999998844 6789999999999999999999999
Q ss_pred hHhhhcCC--hHHHHHHHhHhHHHHHHhhheeeeccCCCccchhhh-hHHHHH----------HHHHHHHHhcc--cccc
Q 044122 195 GFFVHHLG--HQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKK-AIESVI----------FTMKGMCKSIK--LPQV 259 (492)
Q Consensus 195 ~~l~~~~g--w~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~l~--~~~~ 259 (492)
+.+.+..+ ||+.|++.+++.++..+....+||+++.+++.++++ ..+..+ ...++.....+ .+..
T Consensus 157 ~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (405)
T TIGR00891 157 SLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKR 236 (405)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhh
Confidence 99888766 999998876665555555566777643221111000 000000 00000000000 0111
Q ss_pred hhh----HHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHH
Q 044122 260 WKP----SLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLL 335 (492)
Q Consensus 260 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~ 335 (492)
+.. .....+............+.+..+ +.|+++.+.+.+.+...++.+++.++.+++.||+++|+.+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~ 313 (405)
T TIGR00891 237 WPTFVYLVVLVLFANLYSHPIQDLLPTYLKA---DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLA 313 (405)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHH
Confidence 111 111111111111111112222222 2689999999999999999999999999999999999987766554
Q ss_pred HHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 044122 336 YGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGG 415 (492)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~ 415 (492)
..+..+. .+.. ............+.+............++++.+|++++|+++|+.+...++|..++|.+.
T Consensus 314 ~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~ 384 (405)
T TIGR00891 314 GQLLIIP--VFAI-------GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIG 384 (405)
T ss_pred HHHHHHH--HHHh-------CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 3221111 1111 011111111112222233333344556778999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 044122 416 GIVLHLLH 423 (492)
Q Consensus 416 g~l~~~~g 423 (492)
|.+.|+.|
T Consensus 385 g~l~~~~g 392 (405)
T TIGR00891 385 ALLAQRLD 392 (405)
T ss_pred HHHHHhcc
Confidence 99999877
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-28 Score=237.46 Aligned_cols=366 Identities=13% Similarity=0.079 Sum_probs=245.6
Q ss_pred ccCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHH
Q 044122 36 QLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYF 114 (492)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l 114 (492)
+.+|+++..+++.| +.+.++....+...|. +++++|++.+++|++.+++.+++.+ +++.|+++||+ +||+.+
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----G~r~~~ 76 (412)
T TIGR02332 4 KLFRRLIIFLFILF-IFSFLDRINIGFAGLT-MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-----GARRWI 76 (412)
T ss_pred eehhHHHHHHHHHH-HHHHhhhhhHHHHHHh-hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-----ChHHHH
Confidence 45677888888888 6777777777777774 5566999999999999999999888 99999999996 788899
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhH
Q 044122 115 VIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSS 194 (492)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~ 194 (492)
..+.++..++.++++++++.. .+++.|++.|++.+...+....++.|+.++ ++|++..++++.+..+|.++++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~--~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~ 152 (412)
T TIGR02332 77 AGIMVLWGIASTATMFATGPE--SLYLLRILVGIAEAGFLPGILLYLTFWFPA--YFRARANALFMIAMPVTMALGLILS 152 (412)
T ss_pred HHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888754 456778999999998877777888888743 5689999999999999999999999
Q ss_pred hHhhh------cCChHHHHHHHhHhHHHH-HHhhheeeeccCCCc--cchhhhhH-HHH---------------H--HHH
Q 044122 195 GFFVH------HLGHQGALGILAIPPTLL-IVLGFVIYETRATSH--HFEKKKAI-ESV---------------I--FTM 247 (492)
Q Consensus 195 ~~l~~------~~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~--~~~~~~~~-~~~---------------~--~~~ 247 (492)
+++.+ ..|||+.|++.+++.++. .+.++++||+|++.. .+++++.. +.. + ...
T Consensus 153 ~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (412)
T TIGR02332 153 GYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQ 232 (412)
T ss_pred HHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccH
Confidence 98764 469999999988887766 556677888765421 01001000 000 0 000
Q ss_pred HHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCch
Q 044122 248 KGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRN 327 (492)
Q Consensus 248 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 327 (492)
+..++.+++|.+|...+..++............+.+..+. +.+++..+.+.+.....++.+++.++.+++.||+++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~ 310 (412)
T TIGR02332 233 RSMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSF--NQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK 310 (412)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH
Confidence 1122223356665554433333322222222222333221 24678888898888999999999999999999998777
Q ss_pred hhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 044122 328 LLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILG 407 (492)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg 407 (492)
.............+ .+.. . .......+....+.................+..|++++|+++|+.+...++|
T Consensus 311 ~~~~~~~~~~~~~~---~~~~----~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g 381 (412)
T TIGR02332 311 HHTALPYLFAAAGW---LLAS----A--TDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIG 381 (412)
T ss_pred HHHHHHHHHHHHHH---HHHH----h--cCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhh
Confidence 53322211111111 1111 0 1111111111111111111111112223356788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 044122 408 SLISKWGGGIVLHLLH 423 (492)
Q Consensus 408 ~~i~~~l~g~l~~~~g 423 (492)
.+++|.+.|.+.|..|
T Consensus 382 ~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 382 SALSPFLIGILKDATG 397 (412)
T ss_pred hhhhhhhcccccccCC
Confidence 9999999999998764
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-27 Score=229.68 Aligned_cols=326 Identities=13% Similarity=0.066 Sum_probs=230.6
Q ss_pred hHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 044122 62 VVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALAL 140 (492)
Q Consensus 62 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (492)
..+|++.+ ++|++++++++..+++.+...+ +|++|+++||+ +||+.++.+.++..++.+++.+.++++ .++
T Consensus 41 ~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~--~l~ 112 (394)
T PRK10213 41 SLLTPMAQ-DLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-----DRRYVVILFAVLLTLSCLLVSFANSFS--LLL 112 (394)
T ss_pred hhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcHHHHHHHHHHHHHHHHHHHHHChHH--HHH
Confidence 34566655 5999999999999999988777 99999999996 788899999999999888888877544 466
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHH-
Q 044122 141 TCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIV- 219 (492)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~- 219 (492)
+.|++.+++.+...+...+++.|..++ ++|+++.++...+.++|.+++|.+++++.+++|||+.|++.+++.++..+
T Consensus 113 ~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 113 IGRACLGLALGGFWAMSASLTMRLVPP--RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 778999999998888899999998843 56899999999999999999999999999999999999998877665533
Q ss_pred hhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccc-eeeeccCCCCCCCCHHHH
Q 044122 220 LGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQ-FYWATDPKAGPAFSQEFV 298 (492)
Q Consensus 220 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~ 298 (492)
.....||+++++++ + .++.++.+++|.++...+..++............ +++. ++.|+++.+.
T Consensus 191 ~~~~~p~~~~~~~~---~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~g~s~~~~ 254 (394)
T PRK10213 191 IIKSLPSLPGEPSH---Q---------KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYM----NLAGFGVDGL 254 (394)
T ss_pred HHHHCCCCCccccc---c---------hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCChhHH
Confidence 33345654322111 0 0123466788888776554333332222111111 2222 2268999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHH
Q 044122 299 GVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWI 378 (492)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (492)
+.+....+++.+++.++.+++.||.+ |+.+.....+.....+..... . ++.+.......+.++..+....
T Consensus 255 g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~-~--------~~~~~~~~~~~l~G~~~~~~~~ 324 (394)
T PRK10213 255 TLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLW-G--------SDKIVATGVAIIWGLTFALVPV 324 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH-h--------hhHHHHHHHHHHHHHHHHhhhH
Confidence 99888899999999999999999954 443333333222221111111 1 1112222233344555555555
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 379 PMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 379 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
.....+++..| +++++..+......++|..+|+.++|++.|+.|.
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~ 369 (394)
T PRK10213 325 GWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGL 369 (394)
T ss_pred HHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 56667778887 5567788888888899999999999999997763
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=234.25 Aligned_cols=345 Identities=12% Similarity=0.088 Sum_probs=235.4
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+..+..+ ...+..| .+++++|+|.++++++.+++.+++.+ +|++|+++||+ +||+.+..+.++..++.++++
T Consensus 14 ~~~~~~~-~~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-----G~r~~~~~~~~~~~~~~~~~~ 86 (377)
T TIGR00890 14 FTSGYVY-TWTLLAP-PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-----GPRAVAMLGGILYGLGFTFYA 86 (377)
T ss_pred HHhhHHh-hhhhHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-----CccchhHHhHHHHHHHHHHHH
Confidence 4444433 2333444 45566999999999999999999888 99999999996 678888889999899988888
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
++++.. .+++.+.+.+++.+...+.....+.++.+ ++|+++.++...+.++|.++++++.+.+.+..|||+.|++
T Consensus 87 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 87 IADSLA--ALYLTYGLASAGVGIAYGIALNTAVKWFP---DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHH--HHHHHHHHHhHHHHHHHHhHHHHHHHHcC---cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 888644 35566778888887766555555566553 4689999999999999998877777777788899999999
Q ss_pred HhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCC
Q 044122 210 LAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPK 288 (492)
Q Consensus 210 ~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (492)
.+++.++. ...+++++|+++++.+++++. + +...+.++.+++|.++...+..++..............+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 232 (377)
T TIGR00890 162 MGIIFLLVIVLGAFLIGYPPGQLIKTNIEV--S---VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYG---- 232 (377)
T ss_pred HHHHHHHHHHHHHHheecCchhccccCccc--c---hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHH----
Confidence 98887776 444455665443222111010 0 1112345677888877665444333222111111111221
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+++|.++.+.+.+.....++.+++.++.+++.||+++|+.+..+.....+..+. ..+.. .......+....+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~ 304 (377)
T TIGR00890 233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAA-MLFIP-------MLNDVLFLATVAL 304 (377)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-HHHcc-------cchhHHHHHHHHH
Confidence 226788888898888999999999999999999999998887765555443221 11111 0011111111122
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
.+...+........+.+|..|++++|+++|+.+...++|..++|.+.|.+.++.|+
T Consensus 305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 360 (377)
T TIGR00890 305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF 360 (377)
T ss_pred HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 23333333334456778999999999999999999999999999999999987764
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=238.99 Aligned_cols=362 Identities=12% Similarity=0.100 Sum_probs=240.6
Q ss_pred CcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHH
Q 044122 38 HSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVI 116 (492)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~ 116 (492)
+++......+.+ +.++++.......+|.+ ++++|+|..+.+++.+++.++..+ +|++|+++||+ +||+.+..
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i-~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-----g~r~~l~~ 88 (426)
T PRK12307 16 QKNALFSAWLGY-VFDGFDFMLIFYIMYLI-KADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-----GRKPLMMW 88 (426)
T ss_pred HHHHHHHHHHHH-HHHHhHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHH
Confidence 344445555566 66667666665565554 455999999999999999999888 99999999996 78999999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhH
Q 044122 117 AGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGF 196 (492)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~ 196 (492)
+.++..++.++++++++.. .+++.+++.|++.+...+....++.|..++ ++|+++.++...+..+|.++++.+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~--~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 89 SIVAYSVGTGLSGLASGVI--MLTLSRFIVGMGMAGEYACASTYAVESWPK--HLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHhCCH--hHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 9999999988888887543 466778999999988888888888888744 568999999999999999999999999
Q ss_pred hhhcCChHHHHHHHhHhHHHHHHhhheeeeccCCCccc--hhhh-hHHHHHHHHHHHHHhcccccchhhHHHHhhhhhh-
Q 044122 197 FVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHF--EKKK-AIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAV- 272 (492)
Q Consensus 197 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 272 (492)
+.+..|||+.|++..+..++........||+++..+++ ++++ .....+....+.++.+++|.++............
T Consensus 165 l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (426)
T PRK12307 165 FAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIF 244 (426)
T ss_pred HcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 98999999999885443333222222334432211100 0000 0000011112456677777765443222111111
Q ss_pred --cccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhh
Q 044122 273 --SISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRW 350 (492)
Q Consensus 273 --~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (492)
........+.+.. +.|+++.+.+.+.+...++.+++.++.+++.||+++|+....+.++..+..+. .....
T Consensus 245 ~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~-- 317 (426)
T PRK12307 245 GANWPIFGLLPTYLA----GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFP-LFRIP-- 317 (426)
T ss_pred HHHHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHHc--
Confidence 1111111222222 25788888998888889999999999999999999998877665544432111 11111
Q ss_pred hhhcCCCCcchhhhhhHHHHHH--HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 351 NLALGIPDSFFVITEQCVSHIV--SRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
... ...+.. .+.... ...........+.+.+|++.+|+++|+.....+++..++|.+.|++.++.|+
T Consensus 318 -----~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~ 386 (426)
T PRK12307 318 -----QDN-YLLLGA-CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGL 386 (426)
T ss_pred -----ccc-HHHHHH-HHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence 011 111111 111110 0111122335668999999999999999999999999999999999998763
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=240.71 Aligned_cols=364 Identities=12% Similarity=-0.005 Sum_probs=235.7
Q ss_pred cCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHH
Q 044122 37 LHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFV 115 (492)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~ 115 (492)
++|.++...+..+....+.. ...+..++.+.. ++|.+.++++++.+.+.+...+ .|++|+++||+ +||+.++
T Consensus 16 ~~w~i~~~~~~~~~~~~~~~-~~~~~~~~~i~~-~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----g~r~~l~ 88 (455)
T TIGR00892 16 WGWVVLGATFVSIGFSYAFP-KAVTVFFKELQQ-IFQATYSETAWISSIMLAVLYAGGPISSILVNRF-----GCRPVVI 88 (455)
T ss_pred cchHHHHHHHHHHHHHHhhh-cchhhhHHHHHH-HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-----CchHHHH
Confidence 56766666665553333332 223445666554 5999999999999998887666 99999999996 6788888
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHh
Q 044122 116 IAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSG 195 (492)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~ 195 (492)
.+.++..++.++++++++.... +...+++.+++.+...+...+++.++.+ ++|+++.++.+.+..+|..+++++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~G~~~~~~~~~~~~~~~~~~~---~~r~~a~g~~~~~~~~g~~~~~~l~~ 164 (455)
T TIGR00892 89 AGGLLASLGMILASFSSNVIEL-YLTAGFITGLGLAFNFQPSLTMLGKYFY---RRRPLANGLAMAGSPVFLSTLAPLNQ 164 (455)
T ss_pred hhHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcchhhhhHHHHHHHHHHH---hhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8888888888888888765432 2334577788777655555666677652 46899999999999999999999999
Q ss_pred HhhhcCChHHHHHHHhHhHHHHHHhh-heeeeccCC---Ccc-ch----h-h-hh--HHHHHHHHHHH--HHhcccccch
Q 044122 196 FFVHHLGHQGALGILAIPPTLLIVLG-FVIYETRAT---SHH-FE----K-K-KA--IESVIFTMKGM--CKSIKLPQVW 260 (492)
Q Consensus 196 ~l~~~~gw~~~f~i~~~~~~~~~~~~-~~~~e~~~~---~~~-~~----~-~-~~--~~~~~~~~~~~--~~~l~~~~~~ 260 (492)
.+.+.+|||+.|++.+++.++..+.. +..++++.+ +.+ .+ + . ++ ..+..+...+. .+.+++|.++
T Consensus 165 ~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (455)
T TIGR00892 165 YLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFL 244 (455)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHH
Confidence 99999999999999988776553333 222221110 000 00 0 0 00 00001111111 2567888887
Q ss_pred hhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CchhhHHHHHHHHH
Q 044122 261 KPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYP--YRNLLFFAQLLYGI 338 (492)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~--~~~~~~~~~~~~~~ 338 (492)
......++...........+..|.. +.|+++.+.+.+.++.+++.+++.++.+++.||.. .++...+.......
T Consensus 245 ~~~~~~~l~~~~~~~~~~~l~~~~~----~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 245 VYLSGNVIMFLGFFAPIIFLVPYAK----DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHH----HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 6665544444332222111222222 26889999999999999999999999999998743 33333222211111
Q ss_pred hhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 339 SGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIV 418 (492)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l 418 (492)
++..+.... ..+.+..++...+.++..+........++.+.+|++++|+.+|++++..++|..+||.++|.+
T Consensus 321 -~l~~ll~~~-------~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l 392 (455)
T TIGR00892 321 -GLTHLLCAL-------AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL 392 (455)
T ss_pred -HHHHHHHHH-------hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee
Confidence 111111111 011222223333444555555566677888999999999999999999999999999999999
Q ss_pred HHhhc
Q 044122 419 LHLLH 423 (492)
Q Consensus 419 ~~~~g 423 (492)
.+..+
T Consensus 393 ~~~~g 397 (455)
T TIGR00892 393 VDATK 397 (455)
T ss_pred ehhcC
Confidence 98764
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=231.76 Aligned_cols=362 Identities=14% Similarity=0.068 Sum_probs=232.6
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+...+...+..+.+|.++++++|.|..++|++.+++.+++.+ +|+.|+++||+ +||+.++.+.++..++.+.+.
T Consensus 25 ~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-----g~r~~l~~~~~~~~~~~~~~~ 99 (399)
T PRK05122 25 FISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-----GPKKAVVFGLCGCALSGLLYL 99 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-----CCcchHHHHHHHHHHHHHHHH
Confidence 444555566777888888888999999999999999999887 99999999996 788888888887766655544
Q ss_pred hc---CCc---hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCCh
Q 044122 130 LL---GKL---PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGH 203 (492)
Q Consensus 130 ~~---~~~---~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw 203 (492)
++ ++. ....+++.|++.|++.+...+...+++.+..+ +++|++++++...+..+|.++|+.+++.+.++.||
T Consensus 100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 177 (399)
T PRK05122 100 LAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVG--ALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGL 177 (399)
T ss_pred HhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcC--hhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccH
Confidence 32 221 23346778899999999888888888888774 36689999998899999999999999999999999
Q ss_pred HHHHHHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceee
Q 044122 204 QGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYW 283 (492)
Q Consensus 204 ~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (492)
+..+++.++..++..+.....|++++.+ . ++ .+.++ .++ +.+.......+..............|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~---~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (399)
T PRK05122 178 AGLGLLIMLLALLGLLLARPRPAVPPVK--G-ER---LPFRR-------VLG--RVWPYGMGLALASIGFGTIATFITLY 242 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCC--c-cc---hhHHH-------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998877665544433333233222111 1 01 11111 111 11111111111111111111111112
Q ss_pred eccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhh
Q 044122 284 ATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 363 (492)
Q Consensus 284 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (492)
..+ .|++ ..+.......++.+++.++.+++.||+++|+.+..+..+..+..+. .... ++.+..+
T Consensus 243 ~~~----~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~ 306 (399)
T PRK05122 243 YAA----RGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLL-LWLA---------PSPWMAL 306 (399)
T ss_pred HHH----cccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHh---------ccHHHHH
Confidence 222 2443 3345556777888899999999999999988877665544432211 1111 1111222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHH
Q 044122 364 TEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLR 443 (492)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 443 (492)
....+.++..+...+.......+..|++++|+++|+++...++|..+++.+.|.+.++.|++ ..+.+.+++.
T Consensus 307 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~--------~~~~~~~~~~ 378 (399)
T PRK05122 307 IGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYP--------SIFLAAALAA 378 (399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--------HHHHHHHHHH
Confidence 22234444444444444556678899999999999999999999999999999999876632 2444455555
Q ss_pred HHHHHHHhhcCCCCc
Q 044122 444 FATLGLIFLVPKGNH 458 (492)
Q Consensus 444 ~~~~~~~~~~~~~~~ 458 (492)
+++.+.....+++++
T Consensus 379 ~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 379 LLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHhccccc
Confidence 556655555555433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=230.21 Aligned_cols=357 Identities=15% Similarity=0.127 Sum_probs=239.6
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHH
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIA 137 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (492)
..++.+|.+.+ ++|+|.+++|++.+.+.+++.+ +|+.|+++||+ +||+.+..+.+++.++.+.+++++++..
T Consensus 27 ~~~~~lp~i~~-~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-----G~r~~l~~~~~l~~~~~~~~~~a~~~~~- 99 (393)
T PRK09705 27 SVGPLLPQLRQ-ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-----SERRSVAISLLLIAVGALMRELYPQSAL- 99 (393)
T ss_pred ccchhHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHCcchHH-
Confidence 34556676654 5999999999999999999888 99999999996 7899999999999999999999997653
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcC-ChHHHHHHHhHhHHH
Q 044122 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHL-GHQGALGILAIPPTL 216 (492)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~-gw~~~f~i~~~~~~~ 216 (492)
++..|+++|+|.+...+...+++.+..+ ++|+++++.+..+...|..+|+.+++++.++. +||..+.+.++..++
T Consensus 100 -ll~~r~l~Gig~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 100 -LLSSALLGGVGIGIIQAVMPSVIKRRFQ---QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred -HHHHHHHHHhHHHHHhhhhhHHHHHHcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5677999999999888888888777653 46899999999999999999999999988875 899988776655444
Q ss_pred HHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHH
Q 044122 217 LIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQE 296 (492)
Q Consensus 217 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 296 (492)
..+.++...+++++++++ ++ ...++.+++|..|...+..++............+.+.. +.|++..
T Consensus 176 ~~~~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~----~~g~s~~ 240 (393)
T PRK09705 176 ALFAWWWQSAREVASSHK--TT---------TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYI----EIGASAQ 240 (393)
T ss_pred HHHHHHHHhcCCCccccC--CC---------cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCChh
Confidence 433333222221111110 00 01234456676665554443333322222222222222 2688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHH
Q 044122 297 FVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLR 376 (492)
Q Consensus 297 ~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (492)
+.|...++..++.+++.++.+++.||.++|+....+..+..+..+. ..... . ...... ..+.++..+..
T Consensus 241 ~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~-~~~~~-------~-~~~~~~--~~l~g~g~g~~ 309 (393)
T PRK09705 241 YSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCG-FIWLP-------L-QLPVLW--AMVCGLGLGGA 309 (393)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HHHcc-------c-hHHHHH--HHHHHHhccch
Confidence 9999999999999999999999999999998877765444432221 11111 0 000111 11122222333
Q ss_pred HHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHH-HhhcC
Q 044122 377 WIPMIVLSTRLC-PRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGL-IFLVP 454 (492)
Q Consensus 377 ~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 454 (492)
.........+.. |++++|+.+|+.+...+++..++|.+.|++.|+.|. +.. .+.+..++.++..+. ....|
T Consensus 310 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~----~~~---~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 310 FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN----YLM---DWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----chH---HHHHHHHHHHHHHHHHHHhcc
Confidence 333444445555 457889999999999999999999999999998762 222 344444444334433 34566
Q ss_pred CCCcc
Q 044122 455 KGNHS 459 (492)
Q Consensus 455 ~~~~~ 459 (492)
|++.+
T Consensus 383 ~~~~~ 387 (393)
T PRK09705 383 ARFPQ 387 (393)
T ss_pred ccccc
Confidence 65543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=227.34 Aligned_cols=325 Identities=11% Similarity=0.002 Sum_probs=209.6
Q ss_pred hhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 044122 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALA 139 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (492)
.+.+|.+.+ |+|+|+++.|++.+.+.+++.+ +++.|+++||+ +||++++.+......+.......++ ...+
T Consensus 11 ~~~lp~i~~-~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~--~~~l 82 (368)
T TIGR00903 11 SPVLSLVAE-DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-----FKRWFLFGSLATFAAAAGRLLDPFN--YEWL 82 (368)
T ss_pred HhhHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHHHHHHhcc--HHHH
Confidence 445666655 4999999999999999999887 99999999996 5676665544444333322222243 4457
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH-H
Q 044122 140 LTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL-I 218 (492)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~-~ 218 (492)
++.|++.++|.+.. ......+.|+.+ +++|+++.++.+.+..+|.++++++++++.+++|||+.|++.++++++. +
T Consensus 83 ~~~R~l~G~g~~~~-~~~~~~~~~~~~--~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 83 LACQLLAALGQPFL-LNAFAPAASQIR--EERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII 159 (368)
T ss_pred HHHHHHHHhHhHHH-HHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 78899999998854 444455577764 3679999999999999999999999999999999999999988887776 5
Q ss_pred HhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHH
Q 044122 219 VLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFV 298 (492)
Q Consensus 219 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 298 (492)
+.++++||+++++.+. .+ .+ +..+++++++++|.+|...+..++.....+...+..+.|..+ .|++.. .
T Consensus 160 ~~~~~lp~~p~~~~~~--~~-~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~----~g~s~~-~ 228 (368)
T TIGR00903 160 LVLAALPALPFQAAEG--FG-FK---DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP----AGLEDI-A 228 (368)
T ss_pred HHHHHcCCCCCCCCCC--cc-hH---HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCChH-H
Confidence 5666788876543221 10 01 112356778899999888776666555444443333333322 466754 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccC---CCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHH
Q 044122 299 GVIYALGAVASIIGVLIYHKTLKDY---PYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRL 375 (492)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~l~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (492)
+....+..+...++. +++.||. ++|+.......+... +....+.. . . .....+....+.++....
T Consensus 229 ~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a--~~~~~~~~--~----~-~~~~~~~~~~l~~~~~~~ 296 (368)
T TIGR00903 229 GDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIA--AFFLALAF--E----L-NRLALFAFIGIAGLLMLP 296 (368)
T ss_pred HHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHH--HHHHHHHH--c----c-ccHHHHHHHHHHHHhhhh
Confidence 555445444444443 4444444 434433321111111 11111111 0 0 111112222223333333
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 376 RWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVL 419 (492)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~ 419 (492)
.......+.+|..|++.||++.|+.+...++++.++|.+.+.+.
T Consensus 297 ~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 297 AYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred hHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 34445667899999999999999999999999999999988877
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-27 Score=228.92 Aligned_cols=348 Identities=14% Similarity=0.008 Sum_probs=236.0
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+...+......+.+|.+.+ ++|.|..+.++..+.+.++..+ +++.|+++||+ +||+++..+.++..++.+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~ 96 (406)
T PRK15402 23 FATYIANDMIQPGMLAVVE-DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-----GRRPVMLAGVAFFILTCLAIL 96 (406)
T ss_pred HHHHhhhhhHhcchHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHH
Confidence 4444445555566676655 4999999999999999999887 89999999996 788888889888888888888
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
.+++.. .++..+++.+++.+...+...+.+.|..++ ++|.+..++......+|..++|.+++.+.++.+||+.|++
T Consensus 97 ~~~~~~--~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 97 LAQSIE--QFTLLRFLQGIGLCFIGAVGYAAIQESFEE--ADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred HHccHH--HHHHHHHHHHhHhhhHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 877644 355678888888887777777888887743 4577778888788888999999999999999999999999
Q ss_pred HhHhHHHHHH-hhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCC
Q 044122 210 LAIPPTLLIV-LGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPK 288 (492)
Q Consensus 210 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (492)
.+++.++..+ .++..||++++..++ . +.++..++.++.+++|.++...+..++............+++..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~- 245 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETAGRVGEK--L----SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISG- 245 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCCcccccc--c----cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-
Confidence 8887776633 445567654332211 0 1112234556778889887665544433322111111122232222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+|+++.+.+.......++.+++.++.+++.||+++|+....+.+...+.... ..+... .........+....+
T Consensus 246 --~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~-~~~~~~----~~~~~~~~~~~~~~~ 318 (406)
T PRK15402 246 --EQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLL-AALATV----ISSHAYLWLTAGLSL 318 (406)
T ss_pred --hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHHHH----cccccHHHHHHHHHH
Confidence 6889999998877777889999999999999999998877765544432222 111110 000111112222223
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
.+...+....+..... ...+++++|++.++++....++..+|+.+.+.+.+..+
T Consensus 319 ~g~g~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 319 YAFGIGLANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHHHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 3333333333333333 33455899999999999999999999999999877544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=236.05 Aligned_cols=348 Identities=14% Similarity=0.053 Sum_probs=237.8
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHH
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIA 137 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (492)
..+...|. +++++|.+..+++++.+++.++..+ +|++|+++||+ +||+.+..+.++..++.++++++++..
T Consensus 12 ~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~-- 83 (399)
T TIGR00893 12 NLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-----GARKTLAVFIVIWGVFTGLQAFAGAYV-- 83 (399)
T ss_pred hhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-----CcceeeHHHHHHHHHHHHHHHHHcCHH--
Confidence 33445555 5566999999999999999999877 99999999996 677888888888888888888888543
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH
Q 044122 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL 217 (492)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~ 217 (492)
.+++.+++.+++.+...+...+++.|..++ ++|++.+++.....++|.++++.+++.+.+..+||+.|++.+++.++.
T Consensus 84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 84 SLYILRVLLGAAEAPFFPGIILIVASWFPA--SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCH--HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 466778899999998888889999998844 568999999999999999999999999999999999999988877766
Q ss_pred -HHhhheeeeccCCCccch-hhhh--HHH----------HHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceee
Q 044122 218 -IVLGFVIYETRATSHHFE-KKKA--IES----------VIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYW 283 (492)
Q Consensus 218 -~~~~~~~~e~~~~~~~~~-~~~~--~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (492)
++..++.||+++++...+ +++. .+. .++.....++.+++|.++...+..++............+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (399)
T TIGR00893 162 GVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTY 241 (399)
T ss_pred HHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444455666544322111 0000 000 00011235567778877766555544433222222222233
Q ss_pred eccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHH-HHHHHhhhhHHHHHHhhhhhcCCCCcchh
Q 044122 284 ATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQ-LLYGISGMLDLIFILRWNLALGIPDSFFV 362 (492)
Q Consensus 284 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (492)
..+. +|.++.+.+.+.+...++.+++.++.+++.||+++|+...... .......+.........+ . .+.....
T Consensus 242 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~ 315 (399)
T TIGR00893 242 LVQE---RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN-Y--VNIPYAA 315 (399)
T ss_pred HHHH---hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc-c--chhHHHH
Confidence 3232 6889999999998999999999999999999999886221111 111111011011100000 0 1111112
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 363 ITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
+....+.....+ .......+.+|..|++++|+++|+.+.+.++|..++|.+.|.+.+..|
T Consensus 316 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 316 LALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred HHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 222222222222 455666788999999999999999999999999999999999998765
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=232.17 Aligned_cols=390 Identities=9% Similarity=0.037 Sum_probs=240.0
Q ss_pred cchhhhhHHHhhhcccccchhhhhHhhHHhhhhc--CcChHHHHHHHH-----Hhhhhhhh-hhHHhhhccccccCCCCc
Q 044122 39 SSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQ--KVQPSTVQIYIG-----LYYLPWVM-KPIWGIFTDAFPIKGYHR 110 (492)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~g~~~s-----~~~l~~~~-~~~~G~lsDr~~~~g~~R 110 (492)
++.+......+ +.+.++........+.+..+++ +.++. .+++.+ +..+...+ +++.|+++||+ +|
T Consensus 21 ~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-----Gr 93 (438)
T PRK09952 21 RRAALGSFAGA-VVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-----GR 93 (438)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-----cc
Confidence 34445555555 6677777666666666666555 67766 455432 22233334 67789999996 78
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCchH------HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHH
Q 044122 111 RPYFVIAGVLGLVSALIVALLGKLPI------ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSG 184 (492)
Q Consensus 111 k~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~ 184 (492)
|+.++.+.+++.++++++++++++.. ..++..|+++|++.+...+....++.|..++ ++|++..+....+..
T Consensus 94 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~--~~rg~~~~~~~~g~~ 171 (438)
T PRK09952 94 KRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK--NKKAFYSSGVQVGYG 171 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC--CCCcHHHHHHHHHHH
Confidence 88999999999999999999998652 2366789999999998888888888998854 568999998888888
Q ss_pred HHHHHHHHhHhHhh--------hcCChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhccc
Q 044122 185 AGSLIGYSSSGFFV--------HHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKL 256 (492)
Q Consensus 185 ~G~~lg~~l~~~l~--------~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (492)
+|.+++..+...+. ..+|||.+|++.+++.++........||+++..++.+++++. ++........+++
T Consensus 172 ~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~---~~~~~~~~~l~~~ 248 (438)
T PRK09952 172 VGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA---KKRIPVIEALLRH 248 (438)
T ss_pred HHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc---cccCCHHHHHHHc
Confidence 99888877766654 257999999988776554444444566654321111000000 0000111234456
Q ss_pred ccchhhHHH-HhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHH
Q 044122 257 PQVWKPSLY-MFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLL 335 (492)
Q Consensus 257 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~ 335 (492)
|+.+..... .++.....+......+.|..+. +|+++.....+....++..+++.++.|++.||+++|+.+..+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~---~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~ 325 (438)
T PRK09952 249 PGAFLKIIALRLCELLTMYIVTAFALNYSTQN---LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALI 325 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 655544332 2221111111111222233222 678877665555566777788889999999999999887766544
Q ss_pred HHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHHHHHHHH
Q 044122 336 YGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDI-LGSLISKWG 414 (492)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-lg~~i~~~l 414 (492)
..+..+. ...... ........+....+.++..+........+..|.+|++.|+++.|+.+.... +++.++|.+
T Consensus 326 ~~~~~~~-~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i 399 (438)
T PRK09952 326 GTLSAFP-FFMALE-----AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFI 399 (438)
T ss_pred HHHHHHH-HHHHHH-----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 3322111 111110 011111112222233344444455566788999999999999998666554 899999999
Q ss_pred HHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhcCC
Q 044122 415 GGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPK 455 (492)
Q Consensus 415 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (492)
.|++.+..+. +|.. .+....++.+++.+..+.+|+
T Consensus 400 ~g~l~~~~~~---~~~~---~~~~~~~~~~i~~v~~~~~~~ 434 (438)
T PRK09952 400 AAALVTYFGG---SWHS---VAIYLLAGCLISAMTALLMKD 434 (438)
T ss_pred HHHHHHhcCC---CchH---HHHHHHHHHHHHHHHHHHccc
Confidence 9999886431 2222 334444455555555555655
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=237.09 Aligned_cols=369 Identities=15% Similarity=0.130 Sum_probs=233.9
Q ss_pred cCcchhhhhHHHhhhcccccchhhhhHhhHHhhh-------hcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCC
Q 044122 37 LHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKD-------VQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGY 108 (492)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~ 108 (492)
++.+++....+.. +..+++...++...+.+-++ +++.+.++.+++.+++.++..+ ++++|+++||+
T Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~----- 82 (479)
T PRK10077 9 YIFSITLVATLGG-LLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF----- 82 (479)
T ss_pred HHHHHHHHHHHHH-HhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3444444444444 77788887777776654332 1388999999999999999888 99999999996
Q ss_pred CchhHHHHHHHHHHHHHHHHHhc---------CCch-HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHH
Q 044122 109 HRRPYFVIAGVLGLVSALIVALL---------GKLP-IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSL 178 (492)
Q Consensus 109 ~Rk~~l~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~ 178 (492)
+||+.++.+.++..++.+++++. ++.. ...+++.|+++|++.+...+...+++.|+.++ ++|++.+++
T Consensus 83 Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~--~~rg~~~~~ 160 (479)
T PRK10077 83 GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA--HIRGKLVSF 160 (479)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh--hhhhHHHHH
Confidence 78888888888888887776653 1222 34466889999999999999999999999854 679999999
Q ss_pred HHHHHHHHHHHHHHhHhHhh--------hcCChHHHHHHHhHhHHHHHHhhheeeeccCCCc---cchhhh-h------H
Q 044122 179 CAFCSGAGSLIGYSSSGFFV--------HHLGHQGALGILAIPPTLLIVLGFVIYETRATSH---HFEKKK-A------I 240 (492)
Q Consensus 179 ~~~~~~~G~~lg~~l~~~l~--------~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~-~------~ 240 (492)
...+..+|.++++.+++.+. +..|||+.|++.+++.++..+..+++||+++... +.++.+ . .
T Consensus 161 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~ 240 (479)
T PRK10077 161 NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN 240 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCC
Confidence 99999999999887776543 4579999999988777776556677888764311 110000 0 0
Q ss_pred HHHHHHHHHHHHhcc-----cccchhhH---HH-Hhhhhhh-cccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHH
Q 044122 241 ESVIFTMKGMCKSIK-----LPQVWKPS---LY-MFLSFAV-SISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASI 310 (492)
Q Consensus 241 ~~~~~~~~~~~~~l~-----~~~~~~~~---~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 310 (492)
.+.++..++.++.++ .+..+... +. .+..... .........++.+...++.|++....++.....++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~ 320 (479)
T PRK10077 241 TLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINL 320 (479)
T ss_pred hhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 001111122222221 11111110 00 0000000 00000111223222223357776666666667788889
Q ss_pred HHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHH-HHHHHHhcCC
Q 044122 311 IGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIP-MIVLSTRLCP 389 (492)
Q Consensus 311 ~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 389 (492)
++.++.+++.||+++|+.+..+..+..+..+... .... . .... ........+.....+....| ...+++|..|
T Consensus 321 i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~-~~~~-~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 394 (479)
T PRK10077 321 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG-TAFY-T---QAPG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFP 394 (479)
T ss_pred HHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHH-HHHh-c---Cccc-HHHHHHHHHHHHHHhccccchhHHHhHhhCC
Confidence 9999999999999999988887766655433221 1110 0 0111 11111111222222222223 4567799999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 390 RGIEGTFFALLMCIDILGSLISKWGGGIVL 419 (492)
Q Consensus 390 ~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~ 419 (492)
+++|++++|+.+...+++..+++.+.+.+.
T Consensus 395 ~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 395 NAIRGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999988877655
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=225.61 Aligned_cols=336 Identities=12% Similarity=0.050 Sum_probs=226.3
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+..+.......+.+|.+.+ ++|.+.++.|++.+.+.++..+ +|++|+++||+ +||+++..+.++..++.++++
T Consensus 13 ~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~l~~ 86 (382)
T PRK10091 13 FGLGMAEFGIMGVLTELAH-DVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-----SLKHILLFLVALCVIGNAMFT 86 (382)
T ss_pred HHHHhhHHHHHhChHHHHH-HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-----ccHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566676654 5999999999999999999888 99999999996 789999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
++++.. .+++.+++.|++.+...+...+.+.+..++ ++|++.++....+..+|..+++++++++.+..|||+.|++
T Consensus 87 ~~~~~~--~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 87 LSSSYL--MLAIGRLVSGFPHGAFFGVGAIVLSKIIKP--GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred HhCcHH--HHHHHHHHHHhhhHHHHHHHHHHHHHhCCh--HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 988654 355678889998887777777777777643 5688899999999999999999999999999999999999
Q ss_pred HhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCC
Q 044122 210 LAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPK 288 (492)
Q Consensus 210 ~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (492)
.+++.++. +...+++||.+++++. + . ++..+.++++..+...+..++..............+..+
T Consensus 163 ~~~~~~~~~~~~~~~lp~~~~~~~~---~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 228 (382)
T PRK10091 163 IAVFNIAVLASIYFWVPDIRDEAKG---G-----L----REQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMF-- 228 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCCccccc---C-----H----HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 88877665 3445567775432111 0 0 111234567766655443333222111111111112222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
..|+++.+.+.+.....++.+++.++.+++.||+++|+.+..+..+..+..+....... + ....+....+
T Consensus 229 -~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~--~-------~~~~~~~~~~ 298 (382)
T PRK10091 229 -ISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG--M-------KTASLIFAFI 298 (382)
T ss_pred -hcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh--h-------HHHHHHHHHH
Confidence 26899999999999999999999999999999999998887776554443222111111 0 0111111111
Q ss_pred HHHHHHHHHHHHHH-HHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044122 369 SHIVSRLRWIPMIV-LSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLL 422 (492)
Q Consensus 369 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~ 422 (492)
..........+... ...+..|++..+... .+...++|.++||.++|++.|..
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~ 351 (382)
T PRK10091 299 CCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLG 351 (382)
T ss_pred HHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcc
Confidence 11111112233332 334444555555543 46778899999999999999863
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=228.75 Aligned_cols=344 Identities=18% Similarity=0.194 Sum_probs=244.4
Q ss_pred cchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHh---c
Q 044122 56 SGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVAL---L 131 (492)
Q Consensus 56 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~---~ 131 (492)
...+..+.++.++.+ +.-|+..++++.....+|..+ .|+.|.++||+ +||++++.+.++.++..+.+++ .
T Consensus 25 G~~~~~va~~wlv~~-lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-----drrrili~~~~~~~~~~~~L~~l~~~ 98 (524)
T PF05977_consen 25 GDWMQTVALAWLVTQ-LTGSPLMVALVQAASTLPILLLSLFAGALADRF-----DRRRILILSQLLRALVALLLAVLAFF 98 (524)
T ss_pred HHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555566767666 778999999999999999876 99999999996 7888998888777654443332 3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHh
Q 044122 132 GKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILA 211 (492)
Q Consensus 132 ~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~ 211 (492)
...+.+.+++..++.+++.++..++.++.+++..++ ++..+++++.....++..++||.++|.++..+|-.+.|.+.+
T Consensus 99 ~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~--~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ina 176 (524)
T PF05977_consen 99 GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK--EDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINA 176 (524)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 333445566677889999999999999999999965 456777888889999999999999999999999999999998
Q ss_pred HhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHH-HHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCC
Q 044122 212 IPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKG-MCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAG 290 (492)
Q Consensus 212 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (492)
+..++.++.....+.+++++... + +++.+.+++ ++.+.++|.++..++..++.+.........++++..+.
T Consensus 177 lsfl~~i~~l~~~~~~~~~~~~~--~---e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~--- 248 (524)
T PF05977_consen 177 LSFLISILALLRWKPPPPPSSLP--R---ERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV--- 248 (524)
T ss_pred HHHHHHHHHHHHccccccccccc--h---hhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH---
Confidence 87777654444444332221111 1 122222233 33344456655554433333332222222233444333
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
+|.++..+|++.+..++|+++|+++.+++.+|++.++++..+.+..++..+. +.+ .++.+..+...++.+
T Consensus 249 l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~-lal---------~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 249 LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLL-LAL---------SPSFWLALIALFLAG 318 (524)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHH-Hhc---------chHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999888877665554432211 111 112222333334555
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVT 425 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~ 425 (492)
.+.........+.+++.+|++.+|++++++.++...+..+|.++.|.+.+++|..
T Consensus 319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~ 373 (524)
T PF05977_consen 319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVR 373 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 5555666667778899999999999999999999999999999999999998854
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=226.80 Aligned_cols=344 Identities=13% Similarity=0.041 Sum_probs=236.0
Q ss_pred cccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHh
Q 044122 52 CQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVAL 130 (492)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~ 130 (492)
...+.........+++.+| ++.+..+.+++.+.+.+++.+ +|++|+++||+ +||++++.+.++..++.+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-----grr~vl~~~~~~~~~~~~~~~~ 87 (393)
T PRK11195 14 FSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-----PKGRVMFIANGIKLLGCLLMLF 87 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-----CCchhhHHHHHHHHHHHHHHHH
Confidence 3333333444556666655 999999999999999999887 99999999996 7888999999888887777666
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHH
Q 044122 131 LGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGIL 210 (492)
Q Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~ 210 (492)
.++. +..+++++++.+...+...++++|+.++ ++|++++++.....++|.++||.++|++.+.. |+..+.+.
T Consensus 88 ~~~~-----~~~r~l~G~~~a~~~pa~~a~i~~~~~~--~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~ 159 (393)
T PRK11195 88 GIHP-----LLAYGLVGIGAAAYSPAKYGILTELLPG--EKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVC 159 (393)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5542 4567889999999999999999999954 57999999999999999999999999998864 88787777
Q ss_pred hHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCC
Q 044122 211 AIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAG 290 (492)
Q Consensus 211 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (492)
+...++..+..+.+||++.++++.+ .+.....++..++.+.++++|.++.......+..............|..+.
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 235 (393)
T PRK11195 160 ALIYLLAALFNLFIPRLGARRPGQS-WNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA--- 235 (393)
T ss_pred HHHHHHHHHHHhcCCCCcccccccC-CCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 6655544555567787653322111 100111122223345667777766544333222221111111122333333
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
+|.++.+.|.+.+...++.++++++.+++.||.+.++....+..+ ... ...+... ++.+.......+.+
T Consensus 236 lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~---~~~~~~~-------~~~~~~~~~~~~~G 304 (393)
T PRK11195 236 LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLV---VLLMALQ-------HSLLPAYPLLILIG 304 (393)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHH---HHHHHHH-------hHHHHHHHHHHHHH
Confidence 689999999999999999999999999999998888776665322 211 1111111 11111222233445
Q ss_pred HHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGI-EGTFFALLMCIDILGSLISKWGGGIVLHLLHVT 425 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~ 425 (492)
+..+....+..+..++..|++. +|++.++.+...+++..++..+.+.+ +..|.+
T Consensus 305 ~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~ 359 (393)
T PRK11195 305 ALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVP 359 (393)
T ss_pred HhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCC
Confidence 5556666777777787766654 79999999999999999999999865 556654
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=228.36 Aligned_cols=351 Identities=9% Similarity=0.003 Sum_probs=221.0
Q ss_pred hHHHhhhcccccchhhhhHhhHHhhhhc---CcChHHHHHHHHHhhhhh---hh-hhHHhhhccccccCCCCchhHHHHH
Q 044122 45 IVLVYGLCQGFSGSFFKVVTDYYWKDVQ---KVQPSTVQIYIGLYYLPW---VM-KPIWGIFTDAFPIKGYHRRPYFVIA 117 (492)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~g~~~s~~~l~~---~~-~~~~G~lsDr~~~~g~~Rk~~l~~~ 117 (492)
..+.+ +.+.++...++...|.+ .+++ +.+..+.+...+++.+.+ .+ ++++|+++||+ +||+.+..+
T Consensus 27 ~~~~~-~~~~~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-----Grr~~l~~~ 99 (432)
T PRK10406 27 ASSGN-LVEWFDFYVYSFCSLYF-AHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-----GRKKSMLIS 99 (432)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH-HHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHH
Confidence 33444 55667766666665554 4446 456665555444444443 36 88999999996 789999999
Q ss_pred HHHHHHHHHHHHhcCCchH------HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHH
Q 044122 118 GVLGLVSALIVALLGKLPI------ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGY 191 (492)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~ 191 (492)
.+++.++++++++++++.. ..+++.|+++|++.+...+...+++.|..++ ++|++..+..+.+...|.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~--~~rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVE--GRKGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCC--CcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887642 2467789999999998888899999999854 6789999988888888888887
Q ss_pred HhHhHhh--------hcCChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhH
Q 044122 192 SSSGFFV--------HHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPS 263 (492)
Q Consensus 192 ~l~~~l~--------~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 263 (492)
.++..+. ..+|||.+|++.+++.++.......+||+++.+.+. + +...+.++.+++|+.+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~--~-------~~~~~~~~l~~~~~~~~~~ 248 (432)
T PRK10406 178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA--L-------KEAGSLKGLWRNRRAFIMV 248 (432)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh--h-------cccccHHHHHhhHHHHHHH
Confidence 7655443 267999999988777766554555566654321110 0 0012344556677665544
Q ss_pred HHHhhh-hhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhh
Q 044122 264 LYMFLS-FAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGML 342 (492)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~ 342 (492)
+..++. ....+......+.+.. +.+|++..+.+....+..+...++.++.|++.||+++|+.+....++..+..+.
T Consensus 249 ~~~~~~~~~~~~~~~~~lp~~l~---~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 325 (432)
T PRK10406 249 LGFTAAGSLCFYTFTTYMQKYLV---NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVP 325 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 332221 2212222121222222 226888888888877777777888889999999999998776654433222111
Q ss_pred HHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 044122 343 DLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDIL-GSLISKWGGGIVLHL 421 (492)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~~~l~g~l~~~ 421 (492)
...... ........+....+.....+....+...+.+|.+|++.|++++|+.+...++ .....|.+.+.+ +.
T Consensus 326 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~ 398 (432)
T PRK10406 326 ILSALQ------NVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KS 398 (432)
T ss_pred HHHHHH------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HH
Confidence 111011 0111111111111122222233334456778999999999999999887764 344577777754 54
Q ss_pred hc
Q 044122 422 LH 423 (492)
Q Consensus 422 ~g 423 (492)
.|
T Consensus 399 ~g 400 (432)
T PRK10406 399 IG 400 (432)
T ss_pred hC
Confidence 43
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=237.53 Aligned_cols=363 Identities=15% Similarity=0.171 Sum_probs=232.6
Q ss_pred hcccccchhhhhHhhHHhhhhcCcC--------hHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQ--------PSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLG 121 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~ 121 (492)
+..+++........+....+ ++.+ ..+.+++.+++.++..+ +|++|+++||+ +||++++.+.++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~~~~~~~~~~ 111 (481)
T TIGR00879 38 LMFGYDTGVIGGALALPAFE-FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-----GRKKSLLIIALLF 111 (481)
T ss_pred HhcccccchhhhhhhcHHHH-HhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-----hhHHHHHHHHHHH
Confidence 55566666666666655444 5555 89999999999999887 99999999996 7888899999888
Q ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhH---hHh
Q 044122 122 LVSALIVALLGKL-PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSS---GFF 197 (492)
Q Consensus 122 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~---~~l 197 (492)
.++.+++.+.++. ..+.+++.+++.++|.+...+...+++.|..+ +++|++..++.+.+..+|.++++.++ +..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 189 (481)
T TIGR00879 112 VIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAP--KALRGALTSLYQLAITFGILVAYGFGSGKVSL 189 (481)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCC--hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888877665432 23356778999999999988888999999884 46789999999999999999999998 666
Q ss_pred hhcCChHHHHHHHhHhHHHHHHhhheeeeccCCC---ccchh-hhh----------HHHHHH------------------
Q 044122 198 VHHLGHQGALGILAIPPTLLIVLGFVIYETRATS---HHFEK-KKA----------IESVIF------------------ 245 (492)
Q Consensus 198 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~---~~~~~-~~~----------~~~~~~------------------ 245 (492)
.+..+||+.|++.++..++..+..+++||+++.. .+.++ ++. .....+
T Consensus 190 ~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (481)
T TIGR00879 190 NNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQP 269 (481)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccc
Confidence 6788999999997666655566667778764311 00000 000 000000
Q ss_pred HHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 044122 246 TMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPY 325 (492)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 325 (492)
...+.++..++ ..+......++.............++.....++.|++..+.+.......++.+++.++.+++.||+++
T Consensus 270 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 348 (481)
T TIGR00879 270 SWGSLFSSTRR-IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGR 348 (481)
T ss_pred cHHHHHhcCch-hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00111211111 11111111111111111111122233333223468888788888888889999999999999999999
Q ss_pred chhhHHHHHHHHHhhhhHHHHHHhhhhhcCC--CCcchhhhhhHHHHHHHHHHHHHH-HHHHHhcCCCChhHHHHHHHHH
Q 044122 326 RNLLFFAQLLYGISGMLDLIFILRWNLALGI--PDSFFVITEQCVSHIVSRLRWIPM-IVLSTRLCPRGIEGTFFALLMC 402 (492)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~ 402 (492)
|+.+..+.++..+..+........ . .... ......+....+.....+....+. ..+..+..|++.+++++|+.+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 426 (481)
T TIGR00879 349 RPLLLIGAAGMAICLFVLGILGAS-F-VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVA 426 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc-c-cCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHH
Confidence 998877755544432221111010 0 0000 001111111112222223222232 3455899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 044122 403 IDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 403 ~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
..++|..+++.+.+.+.++.++
T Consensus 427 ~~~lg~~i~~~~~~~~~~~~~~ 448 (481)
T TIGR00879 427 ANWLANFIVGFLFPTMLESIGV 448 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999987653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=234.66 Aligned_cols=353 Identities=11% Similarity=0.042 Sum_probs=212.8
Q ss_pred ccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH---h
Q 044122 55 FSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA---L 130 (492)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~---~ 130 (492)
+..+...+.++.++++++|+|+.++|++.+++.+...+ +|++|+++||+ +||+.++.+..+..+...... .
T Consensus 24 ~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~ 98 (420)
T PRK09528 24 FIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-----GLKKHLLWIISGLLVLFGPFFIYVF 98 (420)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566788889888999999999999999999887 99999999996 567777665544443322111 1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHH
Q 044122 131 LGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGIL 210 (492)
Q Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~ 210 (492)
.+. .........++.++..+.........+.++.++.+++++..++......++|..+++++++.+.+ .+|+..|++.
T Consensus 99 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~ 176 (420)
T PRK09528 99 APL-LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLG 176 (420)
T ss_pred HHH-HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHH
Confidence 110 00001111222222222222222222233322222346777777778889999999999998876 4899999998
Q ss_pred hHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCC
Q 044122 211 AIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAG 290 (492)
Q Consensus 211 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (492)
+++.++..+..++.+++++++.+.++++..++.+...++.++.+|||.++...+..++..............|..+...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (420)
T PRK09528 177 SGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFAT 256 (420)
T ss_pred HHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87777665444444433222111000000001112235566788899887665544333221111111122222222222
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
.+.+..+.|.+.++..++..++.++.+++.||+++|+.+..+..+..+.... ..+. .+.+..+....+.+
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l-~~~~---------~~~~~~~~~~~l~g 326 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIG-SGFA---------TGPLEVSILKLLHA 326 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH-HHhc---------ccHHHHHHHHHHHH
Confidence 3567778899888888899999999999999999999877765554442221 1111 11122222223333
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFAL-LMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
...+........+..+..|++.+++.++. +++..++|..+++.+.|++.|..|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~ 381 (420)
T PRK09528 327 FEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGF 381 (420)
T ss_pred HHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 33344444455677888899999888765 6777889999999999999998764
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=224.90 Aligned_cols=334 Identities=12% Similarity=0.010 Sum_probs=228.0
Q ss_pred ccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchh----HHHHHHHHHHHHHHHHH
Q 044122 55 FSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRP----YFVIAGVLGLVSALIVA 129 (492)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~----~l~~~~~~~~~~~~~~~ 129 (492)
...++..+.+|.+++| +|.|.+++|++.+++.+...+ +|++|+++||+ +|+. .+..+..+..+ ..+.
T Consensus 18 ~~~~~~~p~l~~~l~~-~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~l~~~--~~~~ 89 (382)
T TIGR00902 18 CAYGIFLPFFPAWLKG-IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-----NHIIIALRLLALASAIFAA--AFSA 89 (382)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHHHHH--HHHH
Confidence 3345666778888876 999999999999999888766 99999999996 3422 22222222211 2223
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
.+++. +.+++.+.+.+.+.+...+..+++..+. .++|++..+....+.++|.+++|++++++.+++|||..|++
T Consensus 90 ~~~~~--~~l~~~~~l~~~~~~~~~p~~~al~~~~----~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 90 GAHNA--WLLFIAIGLFALFFSAGMPIGDALANTW----QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred hhhhH--HHHHHHHHHHHHHHccchhHHHHHHHHH----HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 44543 3344556666766666666677776543 24578888888899999999999999999999999999988
Q ss_pred HhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCC
Q 044122 210 LAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKA 289 (492)
Q Consensus 210 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (492)
.++..++..+.. .++|+++++++.+ +++. +..++.++.+|+|+++...+..++..............+..
T Consensus 164 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~----~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~---- 233 (382)
T TIGR00902 164 LTAGLAFMLIGF-LIKPTIPPKDAIP-EDES----QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQ---- 233 (382)
T ss_pred HHHHHHHHHHHH-HcCCCCCCCcccc-cccc----ccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 765533333333 3343321111110 0000 11234567889999988776666654433332222222222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
+.|.++.++|.+..+..++.+++.++.+++.||++.|+.+.++.+...+..... .+ .++.+..+....+.
T Consensus 234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~-~~---------~~~~~~~~~~q~l~ 303 (382)
T TIGR00902 234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII-GA---------IEAFPLIFLLQILH 303 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH-Hh---------HhhHHHHHHHHHHH
Confidence 278999999999999999999999999999999999998887766655432211 11 12223344456677
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMC-IDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~lg~~i~~~l~g~l~~~~g 423 (492)
++..+....+...++++. |++++++.+++++. ...+|..+++.++|++.|+.|
T Consensus 304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777788888878888887 98999999999875 567999999999999999876
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=223.05 Aligned_cols=335 Identities=15% Similarity=0.141 Sum_probs=226.3
Q ss_pred chhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhhhhHHhhhcccc--ccCCCCchhHHHHHHHHHHHHHHHHHhcCCc
Q 044122 57 GSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAF--PIKGYHRRPYFVIAGVLGLVSALIVALLGKL 134 (492)
Q Consensus 57 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~--~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~ 134 (492)
..+.+..+|.+.+| +|+|.+++|++.+. .+++.+++++|+++||+ ++.| |||++++.+.++.+++.+.+++.++.
T Consensus 4 ~~~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~~~~~g~~~Dr~~~~~~G-rr~~~l~~~~~~~~~~~~~l~~~~~~ 80 (356)
T TIGR00901 4 LGLVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSLKFLWSPLVDTVYLPFFG-RRRSWLVLTQVLLLSLLLILSFLVPS 80 (356)
T ss_pred chhHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCCC-ccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 44556677888776 89999999998655 66776799999999998 3457 77888888888888887777776542
Q ss_pred h-HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC--------hHH
Q 044122 135 P-IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG--------HQG 205 (492)
Q Consensus 135 ~-~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g--------w~~ 205 (492)
. .+.+....++.+++.+..+++.++++.|+.++ ++|+++.++...+.++|.++++.+++.+..+.| ||.
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~ 158 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD--EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY 158 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence 2 22333444566778888889999999999844 679999999999999999999999999988888 999
Q ss_pred HHHHHhHhHHHHHHhhh-eeeeccCCCccchhhhhHHHHHHHHHHHHHhccccc---chhhHHHHhhhhhhcccccccce
Q 044122 206 ALGILAIPPTLLIVLGF-VIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQ---VWKPSLYMFLSFAVSISTHEGQF 281 (492)
Q Consensus 206 ~f~i~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 281 (492)
.|++.+++.++..+..+ ..||+++.++.+ +++.++ ..+.+++.+++|. ++...+..++.............
T Consensus 159 ~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (356)
T TIGR00901 159 IFFWTALLILPGLLVTLFLAKEPQEDASVP--KPLTQA---VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTT 233 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccccc--hhHHHH---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887766644433 456643321111 111111 1234455666665 44444443333332222222233
Q ss_pred eeeccCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhh-hhcCCCCc
Q 044122 282 YWATDPKAGPAFSQEFVGVIYALGA-VASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWN-LALGIPDS 359 (492)
Q Consensus 282 ~~~~~~~~~~g~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 359 (492)
+|..+ .|+++.+.+.+....+ ++.+++.++++++.||+++|+.+..+.++..+............. ...+.+..
T Consensus 234 ~~l~~----~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (356)
T TIGR00901 234 LFLLD----MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL 309 (356)
T ss_pred HHHHH----cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 33333 6899999998876544 678899999999999999988887776655543222111111000 00011222
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 044122 360 FFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDI 405 (492)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 405 (492)
+.......+.++..+....+...+.++.+|++++|+++|+.++..+
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2233344455666777888888999999999999999999888765
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=224.77 Aligned_cols=341 Identities=18% Similarity=0.213 Sum_probs=234.3
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+..........+.+|.+.+ ++|.|..+++++.+++.++..+ ++++|+++||+ +||+++..+.++..++.+.+.
T Consensus 15 ~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAA-DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-----GRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred HHHHHHHHHhcccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-----CChHHHHHHHHHHHHHHHHHH
Confidence 4444445555556665554 5999999999999999998877 99999999996 788889899988888888888
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
+.++.. .+++.+++.+++.+...+..++++.|..+ +++|++..++.+....+|..+++.+++++.++.+||+.|++
T Consensus 89 ~~~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 89 LSNNIE--TLLVLRFVQAFGASAGSVISQALVRDIYP--GEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred HHccHH--HHHHHHHHHHcchhHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 887644 35667888999999888889999999884 35689999999999999999999999999999999999998
Q ss_pred HhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCC
Q 044122 210 LAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPK 288 (492)
Q Consensus 210 ~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (492)
.++..++. ++.+++.||+++++++.+ .++..++.++.+++|.++...+...+............+++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLPYEARIQ-------ISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI- 236 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcccCC-------HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH-
Confidence 88877666 444555666544332210 112234556777888887665543333222221111122222222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+|+++.+.+.+.....++.+++.++.+++.||+++|+.+..+..+..+..+....... ...+.....+....+
T Consensus 237 --~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 309 (385)
T TIGR00710 237 --MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI-----LGLGSWAMIIGPMMF 309 (385)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-----hccchHHHHHHHHHH
Confidence 6889999999998999999999999999999999998887765554443222111110 001111112222223
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGI 417 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~ 417 (492)
.+...+...........+..| +++|++.++.+.....+..+.+.+.+.
T Consensus 310 ~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~ 357 (385)
T TIGR00710 310 VGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSL 357 (385)
T ss_pred HHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444455566666 678999999988887655555555553
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=224.98 Aligned_cols=349 Identities=11% Similarity=0.039 Sum_probs=223.2
Q ss_pred chhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHH---HhcC
Q 044122 57 GSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIV---ALLG 132 (492)
Q Consensus 57 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~---~~~~ 132 (492)
.++..+.+|.++++++|.|.+++|++.+.+.++..+ +|++|+++||+ +||+.++.+.+.+.++.+.. +..+
T Consensus 31 ~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~~ 105 (392)
T PRK12382 31 VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-----GAKRSALQGMLACGLAGLAYLLAAILP 105 (392)
T ss_pred HHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-----cchHHHHHHHHHHHHHHHHHHhhhccc
Confidence 445556677777777999999999999999999887 99999999996 67778888877766554332 2222
Q ss_pred C---chHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 133 K---LPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 133 ~---~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
. .+...+++.++++|++.+...+...+.+.+..+ +++|++++++...+.+.|..+|+++++++.+..|||..+.+
T Consensus 106 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 106 VSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVG--PKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 1 234456778899999998887777788888874 46799999999999999999999999999999999988776
Q ss_pred HhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCC
Q 044122 210 LAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKA 289 (492)
Q Consensus 210 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (492)
..+..++........||+++++++ + ++.++. .+.+.++.+... +..............+..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~----~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~--- 245 (392)
T PRK12382 184 TMVLPLLAWAFNGTVRKVPAHAGE---R---PSLWSV----VGLIWKPGLGLA-----LQGVGFAVIGTFVSLYFAS--- 245 (392)
T ss_pred HHHHHHHHHHHHHhccCCCCCccc---C---chHHHH----HHHHHHhHHHHH-----HHHHHHhHHHHHHHHHHHh---
Confidence 655443333222233433221110 1 111111 111112222111 1111111111111122222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
.++++ .+.......++.+++.+..+++.||+++|+.+..+..+..+..+. ..+. ++.+..+....+.
T Consensus 246 -~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~l~ 312 (392)
T PRK12382 246 -KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL-LWLA---------PTAWVALAGAALT 312 (392)
T ss_pred -cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH-HHHc---------ccHHHHHHHHHHH
Confidence 34443 344455677778889999999999999998887766554443221 1111 1111222222334
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHH
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGL 449 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (492)
+...+...........+..|++++|+++|++++..++|..++|.+.|++.|+.|+. . .+.+.+++.+++.+.
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~-----~---~~~~~~~~~~~~~~~ 384 (392)
T PRK12382 313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYP-----S---VFLAGAISAVLGIIV 384 (392)
T ss_pred HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----H---HHHHHHHHHHHHHHH
Confidence 44444444555567788899999999999999999999999999999999987643 2 344444444444444
Q ss_pred Hh
Q 044122 450 IF 451 (492)
Q Consensus 450 ~~ 451 (492)
..
T Consensus 385 ~~ 386 (392)
T PRK12382 385 TI 386 (392)
T ss_pred HH
Confidence 43
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-26 Score=223.37 Aligned_cols=365 Identities=13% Similarity=0.069 Sum_probs=225.4
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhh-hhhhhhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYL-PWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l-~~~~~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+..++...+..+.++.++++++|+|.+++|++.+...+ ++.++++.|..+||++ +||.+++.+.++..++..+++
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g----~r~~~~~~~~~~~~~~~~~~~ 100 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRG----DRKSLIVFCCLLGVLACTLFA 100 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHHH
Confidence 45556666777888999888899999999999877655 5666777666699962 555566666676666666777
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
+++++.. .++..++..+.+. ...+...++..+..+++.++.+...++.+.+.++|.++||++++.+.+++|||..|++
T Consensus 101 ~~~~~~~-l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~ 178 (393)
T PRK15011 101 WNRNYFV-LLFVGVFLSSFGS-TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLS 178 (393)
T ss_pred HhhHHHH-HHHHHHHHHHHHH-hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHH
Confidence 7765442 2233344444443 4455666666665532211223445777889999999999999999999999999999
Q ss_pred HhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccc-cchhhHHHHhhhhhhcccccccceeeeccC
Q 044122 210 LAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLP-QVWKPSLYMFLSFAVSISTHEGQFYWATDP 287 (492)
Q Consensus 210 ~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (492)
.++..++. ++.++++||+++++++. ++ +. +.. .+++ ..+......++............+.|..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~- 245 (393)
T PRK15011 179 AAVAFIVCGVMVWLFLPSMRKELPLA--TG---TL----EAP---RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIIN- 245 (393)
T ss_pred HHHHHHHHHHHHHhhcCccCCCCccc--cc---cc----ccc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 88877766 44556678764332211 00 00 011 1222 22222221112111111111112223322
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhH
Q 044122 288 KAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQC 367 (492)
Q Consensus 288 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (492)
++|+++.+.+.+.....++.+++.++.|++.||+++|+.+..+.....+. +..... . .+....+....
T Consensus 246 --~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~-~~~~~~-~--------~~~~~~l~~~~ 313 (393)
T PRK15011 246 --ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCF-YAGMLM-A--------HSPAILLGLQL 313 (393)
T ss_pred --HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHHHHH-H--------hhHHHHHHHHH
Confidence 26889999998887777788889999999999999998776554333321 111111 1 11111122222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHH
Q 044122 368 VSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATL 447 (492)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 447 (492)
+.....+..........++..|+ ++|+++++++...++|..+++.++|.+.++.|+. ..+.++.++.++++
T Consensus 314 l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~--------~~~~~~~~~~~~~~ 384 (393)
T PRK15011 314 LNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYH--------AVFWFALVMIIATL 384 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHH
Confidence 22233333333444556788874 5899999999999999999999999999976632 24455556666666
Q ss_pred HHHhhcCC
Q 044122 448 GLIFLVPK 455 (492)
Q Consensus 448 ~~~~~~~~ 455 (492)
+.+++.|+
T Consensus 385 ~~~~~~~~ 392 (393)
T PRK15011 385 FCLLRIKD 392 (393)
T ss_pred HHHHhhcC
Confidence 66666654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=234.53 Aligned_cols=358 Identities=12% Similarity=0.048 Sum_probs=254.5
Q ss_pred hhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHH
Q 044122 44 GIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGL 122 (492)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~ 122 (492)
.+...+ +...++....+..+|.+.+| +|.+..+.+++.+.+.++..+ .|++|+++||+ +||+.++.+.++..
T Consensus 6 ~~~~~~-~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~ 78 (485)
T TIGR00711 6 VLMLGT-FMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-----GTRRLFLISTFAFT 78 (485)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-----CcHHHHHHHHHHHH
Confidence 333444 66667777777788877665 999999999999999999877 99999999996 78889999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC
Q 044122 123 VSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG 202 (492)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g 202 (492)
++.++++.+++.. .+++.+++++++.+...+...+++.|..+ +++|++..+++..+..+|..+|+.+++++.++.|
T Consensus 79 ~~~~~~~~~~~~~--~l~~~~~~~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 79 LGSLLCGVAPNLE--LMIIFRVIQGFGGGPLIPLSFSTLLNIYP--PEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred HHHHHHhCcCCHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 9999998888654 45677899999999888889999999984 3578999999999999999999999999999999
Q ss_pred hHHHHHHHhHhHHHH-HHhhheeeeccCCCccchhh----------------------hh---HHHHHH-----------
Q 044122 203 HQGALGILAIPPTLL-IVLGFVIYETRATSHHFEKK----------------------KA---IESVIF----------- 245 (492)
Q Consensus 203 w~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~----------------------~~---~~~~~~----------- 245 (492)
||+.|++.+.+.++. .+..++.||+++.+.++.+. .. .+....
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIA 234 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 999999988777665 34445566543322111000 00 000000
Q ss_pred -HHHH--------HHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044122 246 -TMKG--------MCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIY 316 (492)
Q Consensus 246 -~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 316 (492)
..++ -.+.+++|.++...+..++............+.|..+. .|+++.+.++......++.+++.++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~ 311 (485)
T TIGR00711 235 FVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV---LGYTALQAGLHILPVGLAPMLSSPIA 311 (485)
T ss_pred HHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 12456777776665544444332222222223343333 68999999999999999999999999
Q ss_pred HHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 044122 317 HKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTF 396 (492)
Q Consensus 317 ~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 396 (492)
+++.||+++|+.+..+..+..+.... +..... .............+.++..+....+......+..|++++|++
T Consensus 312 g~l~~r~~~~~~~~~g~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~ 385 (485)
T TIGR00711 312 GRMGDKIDPRKLVTIGLILYAVGFYW---RAFTFT---PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARG 385 (485)
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHH---HhccCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHH
Confidence 99999999998877765544432221 110000 001111122223345555556566667777788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 397 FALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 397 ~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
.|+.++..++|..+|+.+.|.+.++
T Consensus 386 ~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 386 SSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-26 Score=222.63 Aligned_cols=355 Identities=13% Similarity=0.049 Sum_probs=236.9
Q ss_pred hhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHH
Q 044122 41 FIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGV 119 (492)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~ 119 (492)
.+......|.+...+...+..+.+|.+. +++|.+.++.++..+++.+++.+ ++++|+++||+ +||++++.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~l~~i~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~l~~~~~ 89 (413)
T PRK15403 16 FFPMALILYDFAAYLTTDLIQPGIINVV-RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-----GRRPVLITGAL 89 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-----CchHHHHHHHH
Confidence 3444445555555566666666777654 45999999999999999999887 99999999996 78889999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhh
Q 044122 120 LGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVH 199 (492)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~ 199 (492)
+..++.+++.++++.. .+++.|+++|++.+...+...+.+.|..++ ++|++.+++...+..+|..+||.+++.+.+
T Consensus 90 ~~~~~~~~~~~a~~~~--~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~ 165 (413)
T PRK15403 90 IFTLACAATLFTTSMT--QFLIARFIQGTSICFIATVGYVTVQEAFGQ--TKGIKLMAIITSIVLVAPIIGPLSGAALMH 165 (413)
T ss_pred HHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888654 456789999998877666666777777643 567888999999999999999999999999
Q ss_pred cCChHHHHHHHhHhHHHHHH-hhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccc
Q 044122 200 HLGHQGALGILAIPPTLLIV-LGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHE 278 (492)
Q Consensus 200 ~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 278 (492)
+.|||+.|++.+++.++..+ .++++||+++++++. . +.++..++.++.+|||.++...+..++..........
T Consensus 166 ~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~--~----~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~ 239 (413)
T PRK15403 166 FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVP--F----SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVA 239 (413)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCC--C----ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888777643 455678765422111 0 0112335667888999998776554444432222222
Q ss_pred cceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCC
Q 044122 279 GQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPD 358 (492)
Q Consensus 279 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (492)
..+++..+. .|+++.+.++.......+.+++..+.+++.+|...++.......+..++.+. ...... . .+.
T Consensus 240 ~~P~~l~~~---~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l-~~~~~~---~--~~~ 310 (413)
T PRK15403 240 VSPVILIDA---GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLAL-LIVGNL---L--WPH 310 (413)
T ss_pred hChHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH-HHHHHH---H--ccc
Confidence 223333333 6899999999887788888888888888876655545433222222211111 111100 0 111
Q ss_pred cc-hhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 359 SF-FVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 359 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
.+ ..+....+.....+...+..... +....+..+|++.|+.+.....+..+++.+.|++.++
T Consensus 311 ~~~~~~~~~~l~~~G~~~~~p~~~~~-al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 311 VWLWSVLGTSLYAFGIGLIFPTLFRF-TLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHH-HhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 11222223333333333333321 2122233479999999999999999999999988775
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-26 Score=221.17 Aligned_cols=338 Identities=12% Similarity=0.016 Sum_probs=216.2
Q ss_pred hHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH---hcCCchHH
Q 044122 62 VVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA---LLGKLPIA 137 (492)
Q Consensus 62 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~---~~~~~~~~ 137 (492)
..++++++| +|.+.++.|++.+.+.++..+ +|++|+++||+ +||+.+..+.++..++.+++. ...+ +..
T Consensus 34 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-----g~k~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 106 (402)
T TIGR00897 34 GWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEII-----GPLKTMMIGLLLWCVGHAAFIVFGLGHA-NYP 106 (402)
T ss_pred HhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHHHHHHHHHHhccCc-cHH
Confidence 356777765 999999999999999999877 99999999996 788888888888877765543 2222 333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHH-HHHHHhHhHhhhcCChHHHHHHHhHhHHH
Q 044122 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGS-LIGYSSSGFFVHHLGHQGALGILAIPPTL 216 (492)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~-~lg~~l~~~l~~~~gw~~~f~i~~~~~~~ 216 (492)
.++..+++.++|.+...+...+.+.+..+ +++|++++++.+.+.++|. ++++.+++++.+..||+..++.......+
T Consensus 107 ~l~~~~~i~G~g~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~ 184 (402)
T TIGR00897 107 LILLFYGIRGLGYPLFAYSFLVWVVYNTK--QDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLT 184 (402)
T ss_pred HHHHHHHHHHcchHHHHhHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 45566788888877666666666666653 4679999999999999997 68999999999888976665544333222
Q ss_pred H-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCH
Q 044122 217 L-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQ 295 (492)
Q Consensus 217 ~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 295 (492)
. ++..++.+++++++++++ + ++.++..++.++.+|+|.++...+..++............++|. +++|++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~g~s~ 256 (402)
T TIGR00897 185 GGVIALFSNKDIFTPQHMQT-R---EKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFV----AELGFST 256 (402)
T ss_pred HHHHHHhccCCCCCcccccC-C---cchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCCh
Confidence 2 233334444322211110 1 11112223455678889887665544443332222222222332 2368899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHH-HHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHH
Q 044122 296 EFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFF-AQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSR 374 (492)
Q Consensus 296 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (492)
.+.+.+.....++.+++.+..|++.||+++|+.... +.+...+..+. +..... . .....+..+....+.+...+
T Consensus 257 ~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~-l~~~~~---~-~~~~~~~~~~~~~~~G~~~~ 331 (402)
T TIGR00897 257 SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLA-LYYIPQ---H-FGHSFAVALIIAIALGIFLA 331 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH-HHHHHH---c-cCCcHHHHHHHHHHHHHHHH
Confidence 888888888889999999999999999998876532 22222211111 111110 0 00111112222223333322
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 375 LRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
. ..+......+. +++++|+++|+.+...+++..++|.+.|.+.+..|
T Consensus 332 ~-~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g 378 (402)
T TIGR00897 332 G-YVPLAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG 378 (402)
T ss_pred H-HHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 23444455565 45689999999999999999999999999999866
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-27 Score=233.13 Aligned_cols=252 Identities=12% Similarity=-0.031 Sum_probs=166.3
Q ss_pred hhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 044122 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALA 139 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (492)
.+.+|.+ .+++|++.++.+++.+.+.+++.+ +++.|+++||+ +||+++..+.+++.++.++++++++.. .+
T Consensus 56 ~~~~~~l-~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----G~r~~~~~~~~~~~~~~~~~~~~~s~~--~l 127 (476)
T PLN00028 56 APLLPII-RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-----GPRYGSAFLLMLTAPAVFCMSLVSSAT--GF 127 (476)
T ss_pred HHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHHHhcCHH--HH
Confidence 3444555 455999999999998888888877 89999999996 677788888888888888888887654 34
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhh----h-----cCChHHHHHHH
Q 044122 140 LTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFV----H-----HLGHQGALGIL 210 (492)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~----~-----~~gw~~~f~i~ 210 (492)
++.+++.|++.+... .....+.++.+ +++|+++.++.+...++|..+++.+.+.+. + ..|||+.|++.
T Consensus 128 ~~~r~l~G~~~~~~~-~~~~~i~~~~~--~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~ 204 (476)
T PLN00028 128 IAVRFFIGFSLATFV-SCQYWMSTMFN--GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVP 204 (476)
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHhcC--hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence 556777887776543 34456677773 357999999888777777777766654432 2 25899999999
Q ss_pred hHhHHHHHHhhheeeeccCCCccch-hhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCC
Q 044122 211 AIPPTLLIVLGFVIYETRATSHHFE-KKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKA 289 (492)
Q Consensus 211 ~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (492)
+++.++..+..+++++++++....+ +++...+..+..+.+++.++++++|...+..++............+.|..+.
T Consensus 205 g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-- 282 (476)
T PLN00028 205 GLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDR-- 282 (476)
T ss_pred HHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh--
Confidence 8888776444444443322211110 0000000001123456677888877665443332221111222222222222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYR 326 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 326 (492)
.|++....+.+.++..++.+++.++.|++.||+++|
T Consensus 283 -~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 283 -FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 689999999998899999999999999999998765
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=231.43 Aligned_cols=343 Identities=20% Similarity=0.245 Sum_probs=235.5
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+...+......+.+|.++.+++|.|..+++++.+++.++..+ +|++|+++||+ +||++++.+.++..++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 6 FLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-----GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCeeeEeehhhhhhhHHHHhh
Confidence 333444455666777456667999999999999999998777 99999999996 678899999999888856665
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
++++.. .+++.+++.+++.+...+...+++.|..++ ++|++.+++...+.++|.++++.+++.+.++.|||+.|++
T Consensus 81 ~~~~~~--~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~ 156 (352)
T PF07690_consen 81 FASNFW--LLLIARFLLGIGSGFFSPASNALIADWFPP--EERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI 156 (352)
T ss_dssp HHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred hhhhHH--HHhhhccccccccccccccccccccccchh--hhhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence 555433 577889999999999999999999999854 6799999999999999999999999999999999999999
Q ss_pred HhHhHHHHHH-hhheeeeccCCCccchhhhhHHHHHHHHHH-HHHhcccccchhhHHHHhhhhhhcccccccceeeeccC
Q 044122 210 LAIPPTLLIV-LGFVIYETRATSHHFEKKKAIESVIFTMKG-MCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDP 287 (492)
Q Consensus 210 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (492)
.+++.++..+ ..++++++++++++.+++++.++.++...+ .+...++|.+|......++............+.|..+
T Consensus 157 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 235 (352)
T PF07690_consen 157 SAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQE- 235 (352)
T ss_dssp HHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCH-
T ss_pred ccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhh-
Confidence 9888888744 335555544433322111110011121222 4455566666533333222222222222222222222
Q ss_pred CCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhh
Q 044122 288 KAGPAFS-QEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQ 366 (492)
Q Consensus 288 ~~~~g~~-~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (492)
.+|++ ..+.+.+..+..+..+++.++.+++.||+++++..........+..+........ .+....+...
T Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 306 (352)
T PF07690_consen 236 --VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS-------SSPVWLIIAL 306 (352)
T ss_dssp --HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH-------CHHHHHHHHH
T ss_pred --ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHH
Confidence 26788 7899988899999999999999999999998777666554444322211111110 1112222233
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH
Q 044122 367 CVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISK 412 (492)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~ 412 (492)
.+.++..+........+..+.+|++++|++.|+.++..++|..+||
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 307 FLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3455566666777788889999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-26 Score=222.83 Aligned_cols=341 Identities=14% Similarity=0.113 Sum_probs=229.3
Q ss_pred cccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 044122 54 GFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLG 132 (492)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~ 132 (492)
........+.+++++++++|++..++|++.+++.+...+ +|+.|+++||+ +||+.++.+.++..++.+++++.+
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~k~~~~~~~~~~~~~~~~~~~~~ 94 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-----DKKRYMLLAITAFASGFIAIPLVN 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CcchhHHHHHHHHHHHHHHHHHHh
Confidence 333445556778888888999999999999998887766 99999999996 678888888888888888888877
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhH
Q 044122 133 KLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAI 212 (492)
Q Consensus 133 ~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~ 212 (492)
+... ++..+.+.+.+.+...+...++..|..+ +++|++..++.+...++|.++||.+++++.+ .||+..|++.++
T Consensus 95 ~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~ 169 (395)
T PRK10054 95 NVTL--VVLFFALINCAYSVFSTVLKAWFADNLS--STSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAI 169 (395)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHH
Confidence 6432 3344555555555556667777777764 3568999999999999999999999998875 799999998877
Q ss_pred hHHHHH-HhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCC
Q 044122 213 PPTLLI-VLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGP 291 (492)
Q Consensus 213 ~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (492)
..++.. +..+++||++++++++ ++ + ..+.++.+|+|.++...+..++..............+.... .+.
T Consensus 170 ~~~i~~i~~~~~~~~~~~~~~~~--~~--~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~ 239 (395)
T PRK10054 170 CSAFPLVFIQIWVQRSEKAIATE--TG--S-----VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV-ADS 239 (395)
T ss_pred HHHHHHHHHHHHHhccccccccc--hh--h-----hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh-ccc
Confidence 776653 3444465544322111 10 0 02235678889888776555543332211111111222111 235
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHH
Q 044122 292 AFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHI 371 (492)
Q Consensus 292 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (492)
+.++...+.+.....+..+...+..+++.||.++|+.+..+..+..+.... ..+.. .+.+..+....+.+.
T Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~ 310 (395)
T PRK10054 240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVG-FIFSG--------NSLLLWGMSAAVFTV 310 (395)
T ss_pred chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHH-HHHcc--------hHHHHHHHHHHHHHH
Confidence 667777888777777777777788899999999998877665444432221 11110 111111222223333
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 372 VSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
......+.....+.+.+|++.+|++++..+ ...+|..+||.++|.+.|+.|.
T Consensus 311 g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~ 362 (395)
T PRK10054 311 GEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPP 362 (395)
T ss_pred HHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcCh
Confidence 333333444557788999999999998754 6778999999999999998874
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-25 Score=219.51 Aligned_cols=331 Identities=15% Similarity=0.056 Sum_probs=221.4
Q ss_pred hhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchH
Q 044122 58 SFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPI 136 (492)
Q Consensus 58 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~ 136 (492)
....+.+|.+.+| +|.|..+.++..+.+.++..+ +|+.|+++||+ +||++++.+.++..++.+++...++..
T Consensus 20 ~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----g~r~~l~~~~~~~~i~~~~~~~~~~~~- 92 (392)
T PRK10473 20 DMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-----GRKPVAIPGAALFIIASLLCSLAETSS- 92 (392)
T ss_pred HHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-----CChHHHHHHHHHHHHHHHHHHHhCcHH-
Confidence 3444566766655 999999999999999998877 99999999996 788899999988888888888877644
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHH
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTL 216 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~ 216 (492)
.++..+++.+++.+...+...+++.|..+ +++|++..++.+....+|..++|.+++.+.+..|||+.|++.+++.++
T Consensus 93 -~~~~~~~l~g~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i 169 (392)
T PRK10473 93 -LFLAGRFLQGIGAGCCYVVAFAILRDTLD--DRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGIL 169 (392)
T ss_pred -HHHHHHHHHHhhhhHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHH
Confidence 34566788888888888888888888874 357899999999999999999999999988889999999998887776
Q ss_pred H-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCH
Q 044122 217 L-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQ 295 (492)
Q Consensus 217 ~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 295 (492)
. ++..+++||++++++++ ++ +..++.++.+++|.++...+...+............+++..+ ++|+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~ 238 (392)
T PRK10473 170 VLLLSLFILKETRPARAPA--AS------SKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLME---QMGFSR 238 (392)
T ss_pred HHHHHHHHcCCCCCcccCC--cc------chHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH---HcCCCH
Confidence 6 44455667765432111 10 011234456677776654433322221111111111222222 268899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHH
Q 044122 296 EFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRL 375 (492)
Q Consensus 296 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (492)
.+.+.+.....++.+++.++.+++.||+++|+....+..+..+..+.. .+.. ... ...... .+... +.
T Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~-~~~~--~~~------~~~~~~-~l~~~--g~ 306 (392)
T PRK10473 239 GEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITL-ALSP--SHA------VSLFGI-TLICA--GF 306 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHH--HHH------HHHHHH-HHHHH--HH
Confidence 999998888999999999999999999999988877765554432221 1111 100 011111 11111 11
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 376 RWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
..........+..|.++++ |...+...++..+++.+++++.++.|.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~ 352 (392)
T PRK10473 307 SVGFGVAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGI 352 (392)
T ss_pred HHHhHHHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111122334445544432 334455678888899999999998874
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-26 Score=221.51 Aligned_cols=332 Identities=16% Similarity=0.097 Sum_probs=224.9
Q ss_pred hhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchH
Q 044122 58 SFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPI 136 (492)
Q Consensus 58 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~ 136 (492)
....+.++.++++++|.|+.++|++.+...++..+ +|++|+++||+ +||+.++.+.++..++.+.+.+.++..
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-----g~k~~l~~~~~~~~~~~~~~~~~~~~~- 100 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-----GAKPMIVTGMLMRAAGFATMAIAHEPW- 100 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-----CchHHHHHHHHHHHHHHHHHHHhccHH-
Confidence 34455667777777999999999999998888766 89999999996 788899999999999988888877543
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHH
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTL 216 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~ 216 (492)
.+.+.+++.+++.+...+...+++.+..+ +++|++..++.+...++|..+||.+++++. .+|||+.|++.++..++
T Consensus 101 -~l~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~ 176 (400)
T PRK11646 101 -LLWLSCILSGLGGTLFDPPRTALVIKLIR--PHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVL 176 (400)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH
Confidence 35566888888888877888888888874 357899999999999999999999999998 77999999998877666
Q ss_pred H-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCH
Q 044122 217 L-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQ 295 (492)
Q Consensus 217 ~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 295 (492)
. ++..++.||++.++. + ++ ..++.++.+++|.++...+..+.............+++..+ .+.++
T Consensus 177 ~~i~~~~~~~~~~~~~~----~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~ 242 (400)
T PRK11646 177 AAAFNAWLLPAYKLSTV----R---TP---VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVND----IAGSP 242 (400)
T ss_pred HHHHHHHhCCccccccc----c---hh---hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHh----hcCCc
Confidence 5 333445555322111 0 01 11345567788877654433222221111111112233333 23466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHH
Q 044122 296 EFVGVIYALGAVASIIGVLIYHKTLK-DYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSR 374 (492)
Q Consensus 296 ~~~g~~~~~~~~~~~~~~~~~~~l~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (492)
.+.+.+.++..++...+....+++.| |.+.++.+..+..+..+..+ ...... +.........+.....+
T Consensus 243 ~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~l~~~~---------~~~~~~~~~~l~~~g~~ 312 (400)
T PRK11646 243 SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMF-PIGMVS---------NLQQLFTLICLFYIGSI 312 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH-HHHHhh---------hHHHHHHHHHHHHHHHH
Confidence 78888877776666655555566655 45555555554443333211 111111 11112222223333334
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 375 LRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
...++...+..+.+|++++|+++|+++...++|..+||.++|++.|+.+
T Consensus 313 ~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 313 IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 4445556778899999999999999999999999999999999999854
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=223.04 Aligned_cols=388 Identities=11% Similarity=0.079 Sum_probs=237.0
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhcccc-ccCCCCchhHHHHHHHHHHHHHHHHHhcC-C--
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAF-PIKGYHRRPYFVIAGVLGLVSALIVALLG-K-- 133 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~-~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~-~-- 133 (492)
.....+++|++|..|+++.++|.+.++..+..++ +|++|+++||+ +++| ||||++..+.+...+...++...+ .
T Consensus 26 ~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~G-r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (448)
T PRK09848 26 MGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWG-KFRPFLLFGTAPLMIFSVLVFWVPTDWS 104 (448)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCc-CchHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 3444566788898999999999999999988777 99999999999 5567 889998888876665545443222 1
Q ss_pred --chHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHH-----HHHHHHHHhHhHhhhc--CChH
Q 044122 134 --LPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSG-----AGSLIGYSSSGFFVHH--LGHQ 204 (492)
Q Consensus 134 --~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~-----~G~~lg~~l~~~l~~~--~gw~ 204 (492)
.....++...++.+++.++..++..++..++.++ +++|.+..++...+.+ ++..++|.+++..... .+|.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~ 183 (448)
T PRK09848 105 HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQ-PQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYH 183 (448)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 1122233344566777777887778887777654 3567777776655433 4444555554432111 1222
Q ss_pred HHHHHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceee
Q 044122 205 GALGILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYW 283 (492)
Q Consensus 205 ~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (492)
....+.+++.++. .+.....||+.+++.++ ++. .+..++++|||.++...+..++.............+|
T Consensus 184 ~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~------~~~---~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~ 254 (448)
T PRK09848 184 FWTIVLAIAGMVLYFICFKSTRENVVRIVAQ------PSL---KISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFY 254 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCcEeccCCCccC------CCH---HHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheee
Confidence 2223333333333 33344566654322111 111 1345678899998877665555544333333344556
Q ss_pred eccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhh
Q 044122 284 ATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 363 (492)
Q Consensus 284 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (492)
..+. +|.++...++......++.+++.++.+++.||+++|+.+..+.++..+..+.. .+.. ....+..+
T Consensus 255 ~~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~-~~~~-------~~~~~~~~ 323 (448)
T PRK09848 255 VRYV---LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLF-FWVS-------VWSLPVAL 323 (448)
T ss_pred Eeee---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHcC-------chhHHHHH
Confidence 5555 56666555554455567788899999999999999999888766555433221 1111 01111222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCc------c
Q 044122 364 TEQCVSHIVSRLRWIPMIVLSTRLCPR-------GIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDY------R 430 (492)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~------~ 430 (492)
....+.+...+....+..++.++..|. +++|..+|+.+...++|..+|+.+.|.+.+..|++.+.- .
T Consensus 324 ~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~~~~~~~ 403 (448)
T PRK09848 324 VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQTPEVIM 403 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHH
Confidence 222334444455555666677777664 457999999999999999999999999999988753211 1
Q ss_pred hh-HHHHHHHHHHHHHHHHHHhhcCCCCcccccCchhhh
Q 044122 431 NL-WLVILIRNVLRFATLGLIFLVPKGNHSNELIPMDLL 468 (492)
Q Consensus 431 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (492)
.. .....+.+++.+++.+..+++|.+|++.++..+|.+
T Consensus 404 ~i~~~~~~~p~~~~~~~~~~~~~y~l~~~~~~~~~~~l~ 442 (448)
T PRK09848 404 GIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEID 442 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeeCCHHHHHHHHHHHH
Confidence 12 222244455556666666778877665544444433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=224.22 Aligned_cols=362 Identities=14% Similarity=0.096 Sum_probs=234.6
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHH-----HHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPST-----VQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVS 124 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~ 124 (492)
+..++......+.+|.+.+| +|.+..+ +|++.+++.++..+ +|++|+++||+ +||+.++.+.++..++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~ 97 (408)
T PRK09874 24 FLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-----GRKIMLLRSALGMGIV 97 (408)
T ss_pred HHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----CcHHHHHHHHHHHHHH
Confidence 33444555666778888876 8888654 48888888888777 99999999996 6788888888888888
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChH
Q 044122 125 ALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQ 204 (492)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~ 204 (492)
.+++.+.++.. .+++.+++.+++.+.. +...+.+.+.. ++++|++..++...+..+|.++++.+++.+.+..+||
T Consensus 98 ~~~~~~~~~~~--~~~~~~~~~g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 172 (408)
T PRK09874 98 MVLMGLAQNIW--QFLILRALLGLLGGFV-PNANALIATQV--PRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLR 172 (408)
T ss_pred HHHHHHHhhHH--HHHHHHHHHHHhhhhH-HhHHHHHHHhc--CHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 88777776543 3555677777765543 44556666666 3466899999999999999999999999999999999
Q ss_pred HHHHHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHH-Hhhhhhhccccccccee
Q 044122 205 GALGILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLY-MFLSFAVSISTHEGQFY 282 (492)
Q Consensus 205 ~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 282 (492)
+.|++.+++.++. +...+++||++++.+++ + . ...++..+.+++|+++..... .++..............
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
T PRK09874 173 PVFFITASVLFLCFLVTLFCIRENFQPVSKK--E--M----LHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTL 244 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccccch--h--h----hHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877665 33445566654322111 1 0 111334556777776553322 22221111111111222
Q ss_pred eeccCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcc
Q 044122 283 WATDPKAGPAFSQ--EFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSF 360 (492)
Q Consensus 283 ~~~~~~~~~g~~~--~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (492)
|..+.. ...+. ...+.+..+.+++.+++.+..+++.||+++|+.+..+.....+..+. .... .+.+
T Consensus 245 ~~~~~~--~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~---------~~~~ 312 (408)
T PRK09874 245 YVRELA--GNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIP-MSFV---------QTPL 312 (408)
T ss_pred HHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-HHHh---------ccHH
Confidence 222211 11111 23455556677888899999999999999999887765544332111 1111 1111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHH
Q 044122 361 FVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRN 440 (492)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~ 440 (492)
..+....+.++..+...+.......+..|++++|+.+++++...++|..+||.++|.+.+..|+. ..+.+.+
T Consensus 313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~--------~~f~~~~ 384 (408)
T PRK09874 313 QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFR--------AVFLVTA 384 (408)
T ss_pred HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchh--------HHHHHHH
Confidence 22222234444445555556667778889999999999999999999999999999999876642 2444455
Q ss_pred HHHHHHHHHHh
Q 044122 441 VLRFATLGLIF 451 (492)
Q Consensus 441 ~~~~~~~~~~~ 451 (492)
++.+++.+..+
T Consensus 385 ~~~l~~~~~~~ 395 (408)
T PRK09874 385 GVVLFNAVYSW 395 (408)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=223.34 Aligned_cols=351 Identities=9% Similarity=0.000 Sum_probs=229.5
Q ss_pred chhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHH
Q 044122 40 SFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAG 118 (492)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~ 118 (492)
++....++.+ +..+......+..+|.+.+ ++|+|.++.+++.+.+.+++.+ +++.|+++||+ +||+.++.+.
T Consensus 7 ~~~~~~~~~~-~~~~~~~~~~g~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----g~r~~~~~~~ 79 (394)
T PRK03699 7 KLTWISFLSY-ALTGALVIVTGMVMGPIAE-YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-----PLKRQLIFGF 79 (394)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhhhHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHH
Confidence 4445555555 5555555566667777654 5999999999999999998887 89999999996 7888898898
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhh
Q 044122 119 VLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFV 198 (492)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~ 198 (492)
++..++.++++++++.. .+++.+++.+++.+...+...+.+.+..++ ++|++..+..+....+|..++|.+.+.+.
T Consensus 80 ~~~~i~~~l~~~~~~~~--~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (394)
T PRK03699 80 ALMILAVAGLMFSHSLA--LFSIAMFVLGVVSGITMSIGTFLITHVYEG--KQRGSRLLFTDSFFSMAGMIFPIIAAYLL 155 (394)
T ss_pred HHHHHHHHHHHHcchHH--HHHHHHHHHHHhhHhhccchhHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887643 456678888988887777777888887743 56888888888888899999999888776
Q ss_pred h-cCChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhccccc
Q 044122 199 H-HLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTH 277 (492)
Q Consensus 199 ~-~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (492)
. ..|||+.|.+.+++.++..+..++.+.++.++++. ++..+ . .+...++.++...+..++.........
T Consensus 156 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (394)
T PRK03699 156 ARSIEWYWVYACIGLVYVAIFILTLFSEFPALGKHAP--KADKP-------V-AKEKWGIGVLFLAIAALLYILAQLTFI 225 (394)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhcCCccccccCc--cccCc-------c-ccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4 57999999988877766543333222111111110 00000 0 011123444433333333222222222
Q ss_pred ccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 044122 278 EGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIP 357 (492)
Q Consensus 278 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (492)
...+.|..+ .+|+|+.+.+.+.+...++..++.++.+++.||+++|+.+.....+..+.. ..+.. .+
T Consensus 226 ~~~p~~l~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~---~~~~~-------~~ 292 (394)
T PRK03699 226 SWVPEYAQK---KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLM---YLFVN-------TD 292 (394)
T ss_pred HHHHHHHHH---HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH---HHHHH-------cC
Confidence 222233322 278999999999888889999999999999999999988776544333211 11111 11
Q ss_pred CcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044122 358 DSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVT 425 (492)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~ 425 (492)
+...........++..+..+....+...+..| +.+++..+......++|..++|.+.|++.+..|+.
T Consensus 293 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~ 359 (394)
T PRK03699 293 DPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQ 359 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCch
Confidence 11111112223333333333333445556565 44567788888899999999999999999987743
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=236.33 Aligned_cols=364 Identities=13% Similarity=0.061 Sum_probs=232.6
Q ss_pred hcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 044122 71 VQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGG 149 (492)
Q Consensus 71 ~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 149 (492)
+++++..+.|++.+.+.+++.+ +++.|+++||+ +||+.+..+.+++.++.+++.+..+.....+++.++++|++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-----VFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-----CcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHh
Confidence 5899999999999999999988 99999999996 67888888888888887776544222233466778999999
Q ss_pred HHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhc-CChHHHHHHHhHhHHHHHHhh-heeeec
Q 044122 150 MAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHH-LGHQGALGILAIPPTLLIVLG-FVIYET 227 (492)
Q Consensus 150 ~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~-~gw~~~f~i~~~~~~~~~~~~-~~~~e~ 227 (492)
.+...+....++.++.+ +++|++..++...+..+|.++++++++.+.+. .|||+.|++.+++.++..+.+ .+.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAP--PKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred cccchhhHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 99988888999999884 36799999999999999999999999999988 499999999988887775444 444554
Q ss_pred cCCCccchhhhhHHHHHHH----------HHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHH
Q 044122 228 RATSHHFEKKKAIESVIFT----------MKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEF 297 (492)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 297 (492)
|+..++.+ +++.+..++. ...+++.+++|.+|...+..++............+.|..+. +|++..+
T Consensus 223 p~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~---~g~s~~~ 298 (465)
T TIGR00894 223 PSIHPCIS-KFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV---LRVSGKE 298 (465)
T ss_pred cccCCCCC-HHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCcChHH
Confidence 43222111 1110111000 01256677888887776555544433322222222333332 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHH---HHHHHHHhhh--hHHHHHHhhhhhcCCCCcchhhhhhHHHHHH
Q 044122 298 VGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFF---AQLLYGISGM--LDLIFILRWNLALGIPDSFFVITEQCVSHIV 372 (492)
Q Consensus 298 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (492)
.+++.++..++.+++.++.|++.||..+|+.... ......+..+ ....+... .. .......+....+....
T Consensus 299 ~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~~~~ 374 (465)
T TIGR00894 299 NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP---YL-SAAFYLTIIILTLANAV 374 (465)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH---Hc-CCchHHHHHHHHHHHHH
Confidence 9999988899999999999999998654432110 0011111000 00111110 00 11111122222222222
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhh
Q 044122 373 SRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFL 452 (492)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (492)
.+...........+..| +..|.+.|+.++...++..++|.+.|.+.+..+ ...+...+.+.++..+++.++...
T Consensus 375 ~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~-----~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 375 SSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDS-----KNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC-----chHHHHHHHHHHHHHHHHHHHeee
Confidence 22222333334456666 589999999999999999999988888776321 122334555666666666555544
Q ss_pred cCC
Q 044122 453 VPK 455 (492)
Q Consensus 453 ~~~ 455 (492)
.++
T Consensus 449 ~~~ 451 (465)
T TIGR00894 449 FGS 451 (465)
T ss_pred eec
Confidence 443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=228.52 Aligned_cols=379 Identities=16% Similarity=0.176 Sum_probs=266.0
Q ss_pred hhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhcccc-ccCCCCchhHHHHHHHHHHHHHHHHHhc-C-C
Q 044122 58 SFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAF-PIKGYHRRPYFVIAGVLGLVSALIVALL-G-K 133 (492)
Q Consensus 58 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~-~~~g~~Rk~~l~~~~~~~~~~~~~~~~~-~-~ 133 (492)
......+++++.|.+|+++..+|.+..+..+-.++ +|+.|.++||. .|+| ||||+++.+.++..++..++... | +
T Consensus 18 ~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~G-rrrp~~l~g~i~~~~~~~llf~~~p~~ 96 (428)
T PF13347_consen 18 SLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWG-RRRPWILIGAILLALSFFLLFSPPPAG 96 (428)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccccc-ccceEeehhhHHHHHHHHHhhccccch
Confidence 33444667788888999999999999988887766 99999999998 5678 99999999999999998888766 4 2
Q ss_pred ch----HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcC-------C
Q 044122 134 LP----IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHL-------G 202 (492)
Q Consensus 134 ~~----~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~-------g 202 (492)
.+ ...+.+..++..++......+..++.+|++++ +++|.++.++...+..+|.++...+.+.+.+.. +
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~-~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~ 175 (428)
T PF13347_consen 97 LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPD-PDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNG 175 (428)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcccccc-HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchH
Confidence 22 12234445556788888888899999999864 357999999999999999877777766655422 5
Q ss_pred hHHHHHHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccce
Q 044122 203 HQGALGILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQF 281 (492)
Q Consensus 203 w~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (492)
|++...+.+++.++. .+..+..||++++..+++++ . +..+..++.++||+++...+..++.............
T Consensus 176 ~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~---~---~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~ 249 (428)
T PF13347_consen 176 YRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKK---I---SLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLP 249 (428)
T ss_pred HHHHHHHHHHHHHHHhhhhhheeeeccccccccccc---c---ccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHH
Confidence 899988888888877 55667788832222211111 1 1224567788899988777766665554443444556
Q ss_pred eeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcch
Q 044122 282 YWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFF 361 (492)
Q Consensus 282 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (492)
||.++. .|.+ ...+.+.....++.+++.++.+++.||+|+|+....+..+.++..+..... . ..+.+.
T Consensus 250 y~~~~v---l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~ 317 (428)
T PF13347_consen 250 YYFTYV---LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL-G-------PGSPWL 317 (428)
T ss_pred HHHHHH---hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH-H-------hhhHHH
Confidence 666665 4444 456677778889999999999999999999999998877777654432221 1 122233
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-cch--
Q 044122 362 VITEQCVSHIVSRLRWIPMIVLSTRLCP-------RGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTD-YRN-- 431 (492)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~-~~~-- 431 (492)
.+....+.+...+..+....++.+|..+ ++++|..+|+.++..+++..+++.+.|.+.+..|++.+. .+.
T Consensus 318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~~~q~~~ 397 (428)
T PF13347_consen 318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANAAVQSAS 397 (428)
T ss_pred HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCcCcCCHH
Confidence 3334445555555555555566666665 467899999999999999999999999999999987543 111
Q ss_pred ----h-HHHHHHHHHHHHHHHHHHhhcCCC
Q 044122 432 ----L-WLVILIRNVLRFATLGLIFLVPKG 456 (492)
Q Consensus 432 ----~-~~~~~~~~~~~~~~~~~~~~~~~~ 456 (492)
. .....+.+++.+++.+...++|-+
T Consensus 398 ~~~~i~~~~~~~p~~~~~~~~i~~~~y~l~ 427 (428)
T PF13347_consen 398 ALSGIRILFSIVPAIFLLLAIIFMRFYPLT 427 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 1 223333444555555555566644
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=219.65 Aligned_cols=336 Identities=13% Similarity=0.120 Sum_probs=225.9
Q ss_pred ccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCC
Q 044122 55 FSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGK 133 (492)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~ 133 (492)
+......+.+|.+.++ +|.|+.+.+++.+++.+++.+ ++++|+++||+ +||+.+..+.++..++.+.+.+.++
T Consensus 22 ~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~ 95 (394)
T PRK11652 22 MAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-----GRRPVILVGMSIFILGTLVALFAHS 95 (394)
T ss_pred HHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-----CChHHHHHHHHHHHHHHHHHHHHcc
Confidence 3334444556666544 999999999999999999887 99999999996 6788888898888888888888776
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHh
Q 044122 134 LPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIP 213 (492)
Q Consensus 134 ~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~ 213 (492)
.. .+++.+++.+++.+...+....+..|..++ +++++..++...+..+|..++|.+++.+.+..|||+.|++.++.
T Consensus 96 ~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~ 171 (394)
T PRK11652 96 LT--VLIAASAIQGLGTGVGGVMARTLPRDLYEG--TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLL 171 (394)
T ss_pred HH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 44 455678888888877777777777776633 56788889888999999999999999999999999999998777
Q ss_pred HHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCC
Q 044122 214 PTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPA 292 (492)
Q Consensus 214 ~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 292 (492)
.++. .+..++.||+++.++++ + +..++.++.+++|.++...+..+...............+..+. +|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g 239 (394)
T PRK11652 172 GAGVTFSMARWMPETRPADARR------T---RVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV---LG 239 (394)
T ss_pred HHHHHHHHHHhCCccCccccch------h---HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH---cC
Confidence 6655 44455677754332111 1 1224456677788776554433332221111111112233332 68
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHH
Q 044122 293 FSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIV 372 (492)
Q Consensus 293 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (492)
+++.+.+++.....++.+++..+.+++.||.+++. ........+..+.. +... .......+.......+.+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~g 312 (394)
T PRK11652 240 LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLM--WIPG---WFGVMNVWTLLVPAALFFFG 312 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHH---HhccccHHHHHHHHHHHHHH
Confidence 89999999888888999999999999999987322 22212122111111 1110 00111112222233344445
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 373 SRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
.+...+.......+..| +++|+..++.+...++|..+++.+++.+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 55556666666777777 678999999999999999999988887654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=218.40 Aligned_cols=333 Identities=11% Similarity=0.019 Sum_probs=221.7
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+..++.....++.+|.+.+| +|.|..++|++.+.+.++..+ +|++|+++||+ +||+.+..+.++..++.+.++
T Consensus 16 ~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-----g~k~~~~~~~~~~~~~~~~~~ 89 (381)
T PRK03633 16 LLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-----GFNRSYYLASLIFAAGCAGLG 89 (381)
T ss_pred HHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777888888776 899999999999999999887 99999999996 788888899999988888888
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
++++.. .+++.++++|++.+...+...+.+.+..+ +++|++.++.++.+.++|..+|+.+++.+.+...|...+.
T Consensus 90 ~~~~~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~- 164 (381)
T PRK03633 90 LMVGFW--SWLAWRFVAGIGCAMIWVVVESALMCSGT--SRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV- 164 (381)
T ss_pred HhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH-
Confidence 887643 45667899999988877776666666653 3568999999999999999999999998876543333222
Q ss_pred HhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCC
Q 044122 210 LAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPK 288 (492)
Q Consensus 210 ~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (492)
.+...... .+.....+|++.+ ++ ++ ++.++.+++|.++......++............+.|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~--~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~--- 228 (381)
T PRK03633 165 TGLVLAAILPLLFTRILNQQAE--NH--DS---------TSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLN--- 228 (381)
T ss_pred HHHHHHHHHHHHHhcccCCCCC--CC--CC---------CCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 22222122 2222222222111 10 00 12234566777664432222221111111111222222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+.|.++.+.+.+.+...++.+++....+++.||+++|+.+..+.....+..+. +... . ... ....+
T Consensus 229 -~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~---~~~~-------~--~~~-~~~~l 294 (381)
T PRK03633 229 -HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIA---MLSQ-------A--AMA-PALFI 294 (381)
T ss_pred -HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHH---Hhhh-------H--HHH-HHHHH
Confidence 25889999998888888999999999999999999998877665554432221 1110 0 001 11112
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
.+.......+.......+..|+++++...+..+...++|..+||.++|++.|+.+.
T Consensus 295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~ 350 (381)
T PRK03633 295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD 350 (381)
T ss_pred HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 22222233444556678888888888888888888999999999999999998763
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-27 Score=227.55 Aligned_cols=351 Identities=10% Similarity=0.050 Sum_probs=233.8
Q ss_pred chhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCch
Q 044122 57 GSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLP 135 (492)
Q Consensus 57 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~ 135 (492)
....+...|.+ .+++|.+..+.+++.++..++..+ ++++|+++||+ +||+.++.+.++..++.++++++++..
T Consensus 11 ~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~ 84 (379)
T TIGR00881 11 RKNFALAMPYL-VEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-----NPRVFLPIGLILCAIVNLFFGFSTSLW 84 (379)
T ss_pred HHhhhhhhHHH-HHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-----CCeehhHHHHHHHHHHHHHHHHhhhHH
Confidence 34445555654 555999999999999999999887 99999999996 788899999999999988888888544
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHH-HhHhHhhhcCChHHHHHHHhHhH
Q 044122 136 IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGY-SSSGFFVHHLGHQGALGILAIPP 214 (492)
Q Consensus 136 ~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~-~l~~~l~~~~gw~~~f~i~~~~~ 214 (492)
.+++.+++.+++.+...+...+++.|..++ ++|++..++.+.+..+|..+++ .+++.+.+..+||+.|++.+++.
T Consensus 85 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (379)
T TIGR00881 85 --VMAALWALNGIFQGMGWPPCGRTVTKWFSR--SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA 160 (379)
T ss_pred --HHHHHHHHHHhhccccCCchHHHHHHhcCH--hhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 456778888998888888888899998844 5689999999999999999999 57777778889999999888877
Q ss_pred HHH-HHhhheeeeccCCCccch------hh----h--hHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccce
Q 044122 215 TLL-IVLGFVIYETRATSHHFE------KK----K--AIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQF 281 (492)
Q Consensus 215 ~~~-~~~~~~~~e~~~~~~~~~------~~----~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (492)
++. ++.+++.+|+++.+...+ ++ + .+++.+......++.+++|.++...+..++............+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (379)
T TIGR00881 161 IIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSP 240 (379)
T ss_pred HHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 455566666543221100 00 0 0000011112345667888887665554443332222222222
Q ss_pred eeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcch
Q 044122 282 YWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFF 361 (492)
Q Consensus 282 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (492)
.+..+. .|+++.+.+.+.....++.+++.++.+++.||..+++..................+.. ....+...
T Consensus 241 ~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 312 (379)
T TIGR00881 241 LYLTQE---KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL-----NPAANPLM 312 (379)
T ss_pred HHHHHH---hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc-----CcchhHHH
Confidence 333232 6889999999999999999999999999999864333222221111111111111100 00111111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044122 362 VITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVT 425 (492)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~ 425 (492)
......+.+...............+.+|++.+|++.|+.+...++|..++|.+.|.+.|+.|+.
T Consensus 313 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 313 DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 1111112222222222233456789999999999999999999999999999999999988754
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-26 Score=223.82 Aligned_cols=369 Identities=12% Similarity=0.064 Sum_probs=225.6
Q ss_pred CcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHH
Q 044122 38 HSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVI 116 (492)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~ 116 (492)
+++.+....+.+ .............. ++++| .|+++++.+++.+++.++..+ +++.|+++||+ +||++++.
T Consensus 25 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~~~~~~~ 96 (438)
T TIGR00712 25 RWQVFLGIFFGY-AAYYLVRKNFALAM-PYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-----NPRVFLPA 96 (438)
T ss_pred HHHHHHHHHHHH-HHHHHHhccHHhhh-HHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-----CCceehHH
Confidence 344445454444 22222222223333 45566 699999999999999999887 99999999996 67778888
Q ss_pred HHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhH
Q 044122 117 AGVLGLVSALIVALLGKL--PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSS 194 (492)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~ 194 (492)
+.++..++.++++..++. ........+++.+++.+...+.....+.|..+ +++|++++++.+.+.++|..+++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~--~~~rg~~~~~~~~~~~~g~~~~~~l~ 174 (438)
T TIGR00712 97 GLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWS--QSERGTIVSIWNCAHNIGGGIPPLLV 174 (438)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcC--cccchhHHHHHHHHHHhHhHHHHHHH
Confidence 888888887777665421 22334456777788877766667777788773 46799999999999999999998877
Q ss_pred hHhh-hcCChHHHHHHHhHhHHHH-HHhhheeeeccCCCc----cc-hhh---h--hHHHHHHHHHH--HHHhcccccch
Q 044122 195 GFFV-HHLGHQGALGILAIPPTLL-IVLGFVIYETRATSH----HF-EKK---K--AIESVIFTMKG--MCKSIKLPQVW 260 (492)
Q Consensus 195 ~~l~-~~~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~----~~-~~~---~--~~~~~~~~~~~--~~~~l~~~~~~ 260 (492)
+... .+.+||..|++.+++.++. ++.++++||++++.. +. +++ + +.++.+...++ ....+|++.+|
T Consensus 175 ~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (438)
T TIGR00712 175 LLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLW 254 (438)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHH
Confidence 6544 4579999999988887775 455666776543210 00 000 0 00000000111 12467888888
Q ss_pred hhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhh
Q 044122 261 KPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISG 340 (492)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~ 340 (492)
...+..++............+.|..+. .|+++.+.+++..+..++.+++.++.+++.||+++++....+........
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~p~~l~~~---~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 331 (438)
T TIGR00712 255 YIAIANVFVYLLRYGVLDWSPTYLKEV---KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVT 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHc---cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 775554443332222222222233322 68899999998888889999999999999999864433222322221111
Q ss_pred hhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 044122 341 MLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILG-SLISKWGGGIVL 419 (492)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg-~~i~~~l~g~l~ 419 (492)
+....+.. . ...+.+.........+...............+.+|++.+|+++|+.++..+++ ..++|.+.|.+.
T Consensus 332 ~~~~~~~~--~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~ 406 (438)
T TIGR00712 332 IAVIVYWM--N---PAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 406 (438)
T ss_pred HHHHHHHh--c---CCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH
Confidence 11111110 0 00111111111111111100001111234578899999999999999998887 468999999999
Q ss_pred Hhhcc
Q 044122 420 HLLHV 424 (492)
Q Consensus 420 ~~~g~ 424 (492)
|+.|+
T Consensus 407 ~~~g~ 411 (438)
T TIGR00712 407 DFFGW 411 (438)
T ss_pred Hhccc
Confidence 98764
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=229.66 Aligned_cols=405 Identities=11% Similarity=0.043 Sum_probs=247.1
Q ss_pred cCcchhhhhHHHhhhcccccchhhhhHhhHHhhhh----cCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCch
Q 044122 37 LHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDV----QKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRR 111 (492)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk 111 (492)
++++++..+.+.. +.++++....+...+.+-.+. ...+..+.+++.+.+.++..+ ++++|+++||+ +||
T Consensus 13 ~~~~~~~~~~~~~-~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-----Grr 86 (502)
T TIGR00887 13 QHFRAIVIAGVGF-FTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-----GRK 86 (502)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccH
Confidence 3444555555555 778888888777777654331 245566788999999998887 99999999996 788
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHH
Q 044122 112 PYFVIAGVLGLVSALIVALLGKLP----IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGS 187 (492)
Q Consensus 112 ~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 187 (492)
+.+..+.++..++.++++++++.. ...+++.|++.|++.+...+....++.|..+. ++|++..++.+....+|.
T Consensus 87 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~--~~Rg~~~~~~~~~~~~g~ 164 (502)
T TIGR00887 87 RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK--KWRGAMMAAVFAMQGFGI 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh--hhHHHHHHHHHHHHHHHH
Confidence 899899888888888888776421 34577889999999999988999999999844 679999999999999999
Q ss_pred HHHHHhHhHhhh-----------------------cCChHHHHHHHhHhHHHHHHhhheeeeccCCC---ccchh--hh-
Q 044122 188 LIGYSSSGFFVH-----------------------HLGHQGALGILAIPPTLLIVLGFVIYETRATS---HHFEK--KK- 238 (492)
Q Consensus 188 ~lg~~l~~~l~~-----------------------~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~---~~~~~--~~- 238 (492)
++++.++.++.. .++||++|.+.+++.++..+..+++||+|+.. .+.++ ++
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~ 244 (502)
T TIGR00887 165 LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD 244 (502)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHH
Confidence 999988876532 24799999888887777667778899987631 11100 00
Q ss_pred -----------hHHH---HH---H-HHHHHHHhccc---ccchhhHHHH----hhhhhhcccccccceeeeccCCCCCCC
Q 044122 239 -----------AIES---VI---F-TMKGMCKSIKL---PQVWKPSLYM----FLSFAVSISTHEGQFYWATDPKAGPAF 293 (492)
Q Consensus 239 -----------~~~~---~~---~-~~~~~~~~l~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~ 293 (492)
+.++ .+ + ....+++++++ ++.++..+.. +......++.....+.+. ++.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~----~~~G~ 320 (502)
T TIGR00887 245 MSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVIL----SAIGY 320 (502)
T ss_pred HHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHH----HHHcC
Confidence 0000 00 0 00123334432 2222221111 111111111111111111 12344
Q ss_pred CHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcch
Q 044122 294 SQEFV-----------GV-IYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFF 361 (492)
Q Consensus 294 ~~~~~-----------g~-~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (492)
+.... .. ...+..++.+++.++.+++.||+|+|+.+..+..+..+........... .+....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~------~~~~~~ 394 (502)
T TIGR00887 321 SPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH------LSTHGF 394 (502)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh------cchhHH
Confidence 32211 11 1234556777888999999999999998877765555432221111110 000001
Q ss_pred hhhhhHHHHHHHHHH-HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCc--chhHHHHHH
Q 044122 362 VITEQCVSHIVSRLR-WIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDY--RNLWLVILI 438 (492)
Q Consensus 362 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~--~~~~~~~~~ 438 (492)
.....+.....+.. ......+.+|..|++.|+++.|+.+.+.+++..+++.+.+.+.+..+...+.. ......+.+
T Consensus 395 -~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 473 (502)
T TIGR00887 395 -LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEI 473 (502)
T ss_pred -HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHH
Confidence 11111111111211 12234456899999999999999999999999999999999988543211000 011223444
Q ss_pred HHHHHHHHHHHHhhcCCCCccc
Q 044122 439 RNVLRFATLGLIFLVPKGNHSN 460 (492)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~ 460 (492)
.+++.+++.+..+++||+++++
T Consensus 474 ~~~~~~~~~i~~~~lpEt~~~~ 495 (502)
T TIGR00887 474 FALFMFLGILFTLLIPETKGKS 495 (502)
T ss_pred HHHHHHHHHHHheEeccCCCCC
Confidence 4444455555556789887654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=216.30 Aligned_cols=331 Identities=17% Similarity=0.162 Sum_probs=222.6
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHH
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIA 137 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (492)
+..+.+|.+.++ +|+|+++++++.+++.++..+ ++++|+++||+ +||+++..+.++..++.+.+.+.++..
T Consensus 9 ~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~i~~~~~~~~~~~~-- 80 (377)
T PRK11102 9 MYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-----GRKPVILGGTLVFALAAVACALAQTID-- 80 (377)
T ss_pred HHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-----CChHHHHHHHHHHHHHHHHHHHHccHH--
Confidence 344566777665 999999999999999998887 99999999996 788899999999999888888887644
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH
Q 044122 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL 217 (492)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~ 217 (492)
.++..+++.+++.+...+..++++.|..+ +++|++.+++.+....+|..+++.+++.+.+..|||+.|++.+++.++.
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFP--KEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILA 158 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 35567888899988888888899999874 3578999999999999999999999999999999999999888877766
Q ss_pred -HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHH
Q 044122 218 -IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQE 296 (492)
Q Consensus 218 -~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 296 (492)
++..+++||++++++++ + .+.++..++.++.+++|..+...+..++............+++..+. .|+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~ 230 (377)
T PRK11102 159 AALVFFFIPETLPKERRQ--P---FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEL---NGVSPQ 230 (377)
T ss_pred HHHHHHhCCccCcccccC--C---CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH---hCCCHH
Confidence 44556677654332211 1 01112234556677888776655443333221111111111222222 688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHH
Q 044122 297 FVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLR 376 (492)
Q Consensus 297 ~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (492)
+.+.+.....++.+++.++.+++.||+++|+.+..+.....+.++........ + . ..+.......+.....+..
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~~~~~~~~~~~~ 304 (377)
T PRK11102 231 NFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL-D----L-GFWALVVGVAAFVGCVSMI 304 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-h----h-hHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998887765544332222211110 0 0 1111111111111112222
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHHHHHHHH
Q 044122 377 WIPMIVLSTRLCPRGIEGTFFALLMCIDI-LGSLISKWG 414 (492)
Q Consensus 377 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-lg~~i~~~l 414 (492)
.........+..| +.+|++.++.+.... +|..+++.+
T Consensus 305 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 305 SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344556555 788999888766543 444444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-25 Score=215.06 Aligned_cols=332 Identities=14% Similarity=0.153 Sum_probs=222.4
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHH
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIA 137 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (492)
...+.+|.+ ++++|.++++++++.+++.++..+ ++++|+++||+ +||+.+..+.++..++.+++.+.++..
T Consensus 24 ~~~p~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (401)
T PRK11043 24 MYLPAFKAI-QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-----GRKPVLLAGLSLFALGSLGMLWVESAA-- 95 (401)
T ss_pred HHHhhHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-----CCcHHHHHHHHHHHHHHHHHHHhcCHH--
Confidence 333444444 456999999999999999999887 99999999996 788889888888888888888887644
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH
Q 044122 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL 217 (492)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~ 217 (492)
.+++.+++.+++.+...+...+++.|..++ +++++..+.......+|..++|.+++++.++.|||+.|++.+++.++.
T Consensus 96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~ 173 (401)
T PRK11043 96 QLLVLRFVQAVGVCSAAVIWQALVIDRYPA--QKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLL 173 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 355667888888777777777888887743 456777888778888999999999999999999999999988877776
Q ss_pred HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHH
Q 044122 218 IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEF 297 (492)
Q Consensus 218 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 297 (492)
.+..++++|++++++++ +...+.++.+++|..+...+...+............+++. ++.|+++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~g~s~~~ 239 (401)
T PRK11043 174 ILPTLRLKPSKKARKQS----------QDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFIL----EQMGYSPAD 239 (401)
T ss_pred HHHHHHcCCCCCccccc----------hHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHH----HHcCCCHHH
Confidence 55445555543322111 0113456677788766544332222221111111122222 226889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHH
Q 044122 298 VGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRW 377 (492)
Q Consensus 298 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (492)
.|+......++.+++....+++.||+++|+..........+..+....... ...+.....+....+.+...+...
T Consensus 240 ~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 314 (401)
T PRK11043 240 IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASL-----LSHPSLVPLLIPFCVMAAANGAIY 314 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-----hccCcHHHHHHHHHHHHHHHHHHH
Confidence 998888888889999999999999999888665544433332221111111 001111112222223333334444
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 378 IPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 378 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
........+..| +++|++.|+.++....+...++.+.|.+.+
T Consensus 315 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 315 PIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 444444455555 679999999999988888999999888876
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=221.12 Aligned_cols=359 Identities=10% Similarity=-0.018 Sum_probs=220.4
Q ss_pred hhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHH-HHhhh--hh---hh-hhHHhhhccccccCCCCchhH
Q 044122 41 FIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYI-GLYYL--PW---VM-KPIWGIFTDAFPIKGYHRRPY 113 (492)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~-s~~~l--~~---~~-~~~~G~lsDr~~~~g~~Rk~~ 113 (492)
....+.+.. +.+.++....+...|.+.+| ++.+..+.+.+. +.... .+ .+ +++.|+++||+ +||+.
T Consensus 16 ~~~~~~~~~-~~~~~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-----Grr~~ 88 (434)
T PRK15075 16 AILRVTSGN-FLEMFDFFLFGFYATAIAKT-FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-----GRRKG 88 (434)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-----chHHH
Confidence 334444445 77778887888787766555 898887765443 22222 22 23 67899999996 78889
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHH------HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHH
Q 044122 114 FVIAGVLGLVSALIVALLGKLPIA------LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGS 187 (492)
Q Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 187 (492)
++.+.++..++.++++++++.... .+++.|++++++.+...+....++.|+.+ +++|++.+++...+.++|.
T Consensus 89 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p--~~~rg~~~~~~~~~~~~g~ 166 (434)
T PRK15075 89 LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT--PGRKGFYTSWQSASQQVAV 166 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC--cccchHHHHHHHHHHHHHH
Confidence 999999999999999999876521 35677899999988877777888999984 4679999999888888888
Q ss_pred HHHHHhHhHhh--------hcCChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccc
Q 044122 188 LIGYSSSGFFV--------HHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQV 259 (492)
Q Consensus 188 ~lg~~l~~~l~--------~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 259 (492)
.+++.+++.+. +.+|||+.|++.++...+........||+++...+. + +.+.++ .+++..++++.
T Consensus 167 ~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~--~--~~~~~~---~~~~~~~~~~~ 239 (434)
T PRK15075 167 VFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK--H--RPSMRE---IFRSLAANWRI 239 (434)
T ss_pred HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh--h--cccccc---HHHHHHHhHHH
Confidence 88887777652 468999999875443222222222333321100000 0 000011 12222333333
Q ss_pred hhhHHHH-hhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHH
Q 044122 260 WKPSLYM-FLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGI 338 (492)
Q Consensus 260 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~ 338 (492)
+...... ++............+.|..+. .|+++.+.+++.....++.+++.++.|++.||+++|+.+..+..+..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~ 316 (434)
T PRK15075 240 VLAGMLMVAMTTVSFYLITVYTPTFGKTV---LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAIL 316 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3222111 111111111111122222222 688888888888888899999999999999999999887765443322
Q ss_pred hhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HHHHHHHHHHH
Q 044122 339 SGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDIL-GSLISKWGGGI 417 (492)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~~~l~g~ 417 (492)
..+....... ..+..........+..+..+........+.+|..|++.||++.|+.+..... ++.++|.+.|+
T Consensus 317 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~ 390 (434)
T PRK15075 317 TAYPALSWLV------AAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW 390 (434)
T ss_pred HHHHHHHHHH------cCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence 1111011111 0111111111111222333333444456778999999999999997665554 57889999999
Q ss_pred HHHhhcc
Q 044122 418 VLHLLHV 424 (492)
Q Consensus 418 l~~~~g~ 424 (492)
+.|+.|.
T Consensus 391 i~~~~g~ 397 (434)
T PRK15075 391 LIHVTGD 397 (434)
T ss_pred HHHhcCC
Confidence 9998763
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-25 Score=215.11 Aligned_cols=333 Identities=13% Similarity=0.049 Sum_probs=219.0
Q ss_pred chhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCc---hhHHHHHHHHHHHHHHHHHhcC
Q 044122 57 GSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHR---RPYFVIAGVLGLVSALIVALLG 132 (492)
Q Consensus 57 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~R---k~~l~~~~~~~~~~~~~~~~~~ 132 (492)
.++..+.+|.+++| +|.|..++|++.+++.++..+ +|++|+++||++ || ++.+.++..+. ........+
T Consensus 20 ~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g----~~~~~~~~~~~~~~~~--~~~~~~~~~ 92 (382)
T PRK11128 20 YGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPS----QLIPALRLLALLTLLF--AVAFWFGAH 92 (382)
T ss_pred HHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhc----chHHHHHHHHHHHHHH--HHHHHHhcc
Confidence 35566677888877 899999999999999998877 999999999973 22 22232222221 112222234
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhH
Q 044122 133 KLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAI 212 (492)
Q Consensus 133 ~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~ 212 (492)
+ .+.+++.+++.+++.+...+..+++..+.. ++|++..+..+...++|..+||++++++.+++|||..|++.++
T Consensus 93 ~--~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~----~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~ 166 (382)
T PRK11128 93 S--FWLLFVAIGLFNLFFSPLVPLTDALANTWQ----KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA 166 (382)
T ss_pred c--HHHHHHHHHHHHHHHcccccHHHHHHHHHH----hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 3 333455677777777766677777776653 2356667777788899999999999999999999999998776
Q ss_pred hHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCC
Q 044122 213 PPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPA 292 (492)
Q Consensus 213 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 292 (492)
..++..+..++.||++++++++ ++ . ++..++.++.+|+|.++...+..++..............|.. +.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~g 236 (382)
T PRK11128 167 GVASMLLGQLLRPTIMPQGESR--QQ-E---SAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQ----AAG 236 (382)
T ss_pred HHHHHHHHHHccCCCCCccccc--cc-c---ccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHH----HCC
Confidence 5544444444455543222111 10 0 011234677888999887766555544332222221122222 268
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHH
Q 044122 293 FSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIV 372 (492)
Q Consensus 293 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (492)
+++.+.|.+.....++.++..++.+++.||+++|+.+..+.+...+..+. ... .++.+..+....+.++.
T Consensus 237 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 237 YSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGL-MGS---------TTALPWLIVIQILHCGT 306 (382)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHh---------hhhHHHHHHHHHHHHHH
Confidence 89999999988888899999999999999999999877766554442211 111 11222233344455555
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Q 044122 373 SRLRWIPMIVLSTRLCPRGIEGTFFALLMC-IDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~lg~~i~~~l~g~l~~~~g 423 (492)
.+........+..+. +++++++.+++++. ...+|..+||.++|.+.|+.|
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g 357 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG 357 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566566666666665 55667899998874 456788999999999999876
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=222.48 Aligned_cols=357 Identities=14% Similarity=0.096 Sum_probs=235.8
Q ss_pred cCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHH
Q 044122 37 LHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFV 115 (492)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~ 115 (492)
++|+.+......+ +..++.........|.+.++ +|.+..+++++.++..++..+ +++.|+++||+ +||+.+.
T Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~ 86 (398)
T TIGR00895 14 YQWRAIILSFLIM-LMDGYDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-----GRKRVLL 86 (398)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-----hhHHHHH
Confidence 3444444454455 55555555555556665554 999999999999999988877 99999999996 7888898
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHh
Q 044122 116 IAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSG 195 (492)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~ 195 (492)
.+.++..++.+++.+.++.. .+++.+++.+++.+...+...+++.|..++ ++|++..++...+..+|..+++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 87 WSILLFSVFTLLCALATNVT--QLLILRFLAGLGLGGLMPNLNALVSEYAPK--RFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHHHHHHHHHHHccchH--HHHHHHHHHhcccccchhhHHHHHHHHcCH--HhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 89888888888888777644 355667888888888888889999998744 56899999999999999999999999
Q ss_pred HhhhcCChHHHHHHHhHhHHHH-HHhhheeeeccCCCccchhhh---------------------hHHHHHHHHHHHHHh
Q 044122 196 FFVHHLGHQGALGILAIPPTLL-IVLGFVIYETRATSHHFEKKK---------------------AIESVIFTMKGMCKS 253 (492)
Q Consensus 196 ~l~~~~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~ 253 (492)
++.+..||+..|++.+++.++. .+..+++||+++...++++++ +.++..+..++.++.
T Consensus 163 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (398)
T TIGR00895 163 WLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKA 242 (398)
T ss_pred HHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHH
Confidence 9999999999999887665554 455566776543211100000 000000011122222
Q ss_pred ccccc----chhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhh
Q 044122 254 IKLPQ----VWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLL 329 (492)
Q Consensus 254 l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~ 329 (492)
++++. .+...+..++............+++. ++.|+++.+.+.+.....++.+++.++.+++.||+++|+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (398)
T TIGR00895 243 LFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM----VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA 318 (398)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 22221 11111111111111111111112222 23688999999998999999999999999999999988443
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH
Q 044122 330 FFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSL 409 (492)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ 409 (492)
... .+..+.... .... ..+....+....+.++..+........+.++.+|++++|+++|+.+++.++|..
T Consensus 319 ~~~-~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 388 (398)
T TIGR00895 319 LLL-LLGAVFAVL--VGST-------LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAI 388 (398)
T ss_pred HHH-HHHHHHHHH--HHHH-------hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 322 222221111 1110 111112222333455555666666777889999999999999999999999999
Q ss_pred HHHHHHHHH
Q 044122 410 ISKWGGGIV 418 (492)
Q Consensus 410 i~~~l~g~l 418 (492)
++|.++|++
T Consensus 389 ~g~~~~G~l 397 (398)
T TIGR00895 389 IGPILAGYL 397 (398)
T ss_pred HHHHhHHhc
Confidence 999999875
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=208.63 Aligned_cols=363 Identities=10% Similarity=0.045 Sum_probs=227.5
Q ss_pred HHHHHHHHHhccCcchhhhhHHHhhhcccccchhhh-hHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhcccc
Q 044122 26 PVQWLQMLSSQLHSSFIFGIVLVYGLCQGFSGSFFK-VVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAF 103 (492)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~ 103 (492)
+..| .+..++..++.+...... |.-++...+.. +..+.+.++++|+|.+|.+++.++..+.+.+ +.+.|+++||+
T Consensus 21 ~~~w-~~~~~~~a~r~l~~s~~~--f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~ 97 (462)
T PRK15034 21 PAFW-ENKGKHIARRNLWISVSC--LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF 97 (462)
T ss_pred hHHH-hhcCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445 444555545543333322 33333333333 3334444446999999999999999998877 78889999996
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHH
Q 044122 104 PIKGYHRRPYFVIAGVLGLVSALIVALL-----GKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSL 178 (492)
Q Consensus 104 ~~~g~~Rk~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~ 178 (492)
+.|+++..+.++..+.++.++++ ++ +..+++.+++.|++ +...+.....+.++.++ ++||++.++
T Consensus 98 -----G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s--~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~--~~rG~A~Gi 167 (462)
T PRK15034 98 -----GGRRWTVFSTAILIIPCVWLGIAVQNPNTP--FGIFIVIALLCGFA-GANFASSMGNISFFFPK--AKQGSALGI 167 (462)
T ss_pred -----CChHHHHHHHHHHHHHHHHHHHHHcccCCC--HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH--hHhHHHHHH
Confidence 56778888888888888888875 43 34466778888887 44556677778888743 678999999
Q ss_pred HHHHHHHHHHHHHHhHhHhh-----h-------------cCChHHHHHHHhHhHHHHH-HhhheeeeccCCCccchhhhh
Q 044122 179 CAFCSGAGSLIGYSSSGFFV-----H-------------HLGHQGALGILAIPPTLLI-VLGFVIYETRATSHHFEKKKA 239 (492)
Q Consensus 179 ~~~~~~~G~~lg~~l~~~l~-----~-------------~~gw~~~f~i~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~ 239 (492)
.....++|..+++++...+. . ..+||.+.++..++.++.. +.+++.++++..+
T Consensus 168 ~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~-------- 239 (462)
T PRK15034 168 NGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSR-------- 239 (462)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc--------
Confidence 87677777766655554322 2 2347777777766666554 3444444332211
Q ss_pred HHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 240 IESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKT 319 (492)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 319 (492)
...++.++.+|+|+.|...+..++....+.++...++++..+ .++.........+..+...+..++.|++
T Consensus 240 -----~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-----~~~~~~~l~~~~l~~l~~~l~rplgG~L 309 (462)
T PRK15034 240 -----ASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-----QFPDVNILRLAFFGPFIGAIARSVGGAI 309 (462)
T ss_pred -----cCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcChHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 112456778999999988776666544444343333334332 2233333222345567778888999999
Q ss_pred HccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCC---------
Q 044122 320 LKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPR--------- 390 (492)
Q Consensus 320 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 390 (492)
+||+|.++.+..+.+...+.........+. . ................+..++.+....-++.+.+|+
T Consensus 310 ADRiG~~~vl~~~~i~~~i~~~~~~l~lp~-~---~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~ 385 (462)
T PRK15034 310 SDKFGGVRVTLINFIFMAIFSALLFLTLPG-T---GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMK 385 (462)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHhcc-c---cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccc
Confidence 999999999888876555543221111110 0 000111111111222344466666666666666663
Q ss_pred ------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 391 ------------GIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 391 ------------~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
++.|.+.|+......+|+.+-|.+.|...+..|
T Consensus 386 ~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g 430 (462)
T PRK15034 386 GGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG 430 (462)
T ss_pred ccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC
Confidence 267889999999999999999999899888776
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=213.15 Aligned_cols=376 Identities=11% Similarity=0.039 Sum_probs=226.5
Q ss_pred ccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCC
Q 044122 55 FSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGK 133 (492)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~ 133 (492)
...+...+.++.++++++|.+..|+|++.++..++..+ +|++|.++||+. |||+.+..+.++..++..+..+.++
T Consensus 16 ~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g----~~r~~~~~~~~~~~~~~~~~~~~~~ 91 (418)
T TIGR00889 16 FIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWL----SAQKVYAVCHFAGALLLFFAAQVTT 91 (418)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445556677788888999999999999999999877 999999999962 6688888888888777777777765
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc------cccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHH
Q 044122 134 LPIALALTCLIGITGGMAIADVVIDACIARNSI------ETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGAL 207 (492)
Q Consensus 134 ~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~------~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f 207 (492)
+.. ++..+++.+++.+...+..+++...... .+...|.+..+ .+|.++|+.+++.+.....|+ +|
T Consensus 92 ~~~--~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f 162 (418)
T TIGR00889 92 PAG--MFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QL 162 (418)
T ss_pred HHH--HHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HH
Confidence 443 3344555566554444444444321111 11123444444 478888998888773332344 46
Q ss_pred HHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccC
Q 044122 208 GILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDP 287 (492)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (492)
++.++..++..+..+++||+++.+++++ .+ .++ ....+.++.+|+|.++...+..++..............+..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~-~~~--~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (418)
T TIGR00889 163 YITAGSSALLGVFALTLPDIPVAKSTAK-MS-IKV--MLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEF 238 (418)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccc-cC-HHH--HhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHh
Confidence 6666666655555667887653222111 10 011 1011234578889887776665554332211111111122111
Q ss_pred C--CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhh
Q 044122 288 K--AG--PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 363 (492)
Q Consensus 288 ~--~~--~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (492)
- .. -+++.+..+...++..++.+++.+..+++.||+++|+.+..+.++..+..... ..... + ....+..+
T Consensus 239 g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~-~~~~~-~----~~~~~~l~ 312 (418)
T TIGR00889 239 GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFF-AYGDP-E----YFGYALLF 312 (418)
T ss_pred cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHcCc-c----hhhHHHHH
Confidence 0 00 02334677888889999999999999999999999999888776555432211 11000 0 00011122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-cCcchhHHHHHHHHH
Q 044122 364 TEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLM-CIDILGSLISKWGGGIVLHLLHVTR-TDYRNLWLVILIRNV 441 (492)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~i~~~l~g~l~~~~g~~~-~~~~~~~~~~~~~~~ 441 (492)
....+.+...+........++++.+|++++|+++|+.+ ...++|..+||.++|++.|+.|... .+|+. .+.++++
T Consensus 313 l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~---~f~~~~~ 389 (418)
T TIGR00889 313 LSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQT---MWLFFAG 389 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHH---HHHHHHH
Confidence 22334444445555555677899999999999999997 5678999999999999999876321 12333 3333333
Q ss_pred HHHHHHH-HHhhcCCC
Q 044122 442 LRFATLG-LIFLVPKG 456 (492)
Q Consensus 442 ~~~~~~~-~~~~~~~~ 456 (492)
+.+++.+ ..+++|+.
T Consensus 390 ~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 390 YIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 3333333 33456654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=218.35 Aligned_cols=355 Identities=12% Similarity=0.100 Sum_probs=235.8
Q ss_pred hhhhcCcC---hHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 044122 68 WKDVQKVQ---PSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCL 143 (492)
Q Consensus 68 ~~~~~g~s---~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (492)
+++|++++ ..+.++..+++.++..+ .+++|+++||+ +||++++++.++..++.++.++++++. .+++.+
T Consensus 115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-----Grr~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~r 187 (505)
T TIGR00898 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-----GRKKVLLLSTLVTAVSGVLTAFSPNYT--VFLVFR 187 (505)
T ss_pred EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-----cchHHHHHHHHHHHHHHHHHHHcccHH--HHHHHH
Confidence 44569999 99999999999999888 99999999996 788899999999999988888888654 466778
Q ss_pred HHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHHhhhe
Q 044122 144 IGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFV 223 (492)
Q Consensus 144 ~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 223 (492)
++.|++.+...+...+++.|..++ ++|++..++...+..+|.++++.+++.+.+ ||+.|++.+++.++..+..++
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPK--KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHhhccchHHHHHHHhheecCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHh
Confidence 999999998888899999999844 568999999889999999999988876643 999999998888777666678
Q ss_pred eeeccCCCccc---hh-hhh-----------------HHHHHH----H--HHHHHHhcccccchhhHHHHhhhhhhcccc
Q 044122 224 IYETRATSHHF---EK-KKA-----------------IESVIF----T--MKGMCKSIKLPQVWKPSLYMFLSFAVSIST 276 (492)
Q Consensus 224 ~~e~~~~~~~~---~~-~~~-----------------~~~~~~----~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 276 (492)
+||+++..... ++ .+. ....++ . ....++++++|.++...+..++..+.....
T Consensus 263 ~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 342 (505)
T TIGR00898 263 VPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS 342 (505)
T ss_pred cCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 89876421110 00 000 000000 0 013456777777766654433322211111
Q ss_pred cccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 044122 277 HEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGI 356 (492)
Q Consensus 277 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (492)
.....++.. ..+.+.... ....++..+++.++.+++.||+++|+.+..+.++.++..+.. .+.. .
T Consensus 343 ~~~~~~~~~----~~~~~~~~~---~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~-~~~~-------~ 407 (505)
T TIGR00898 343 YYGLVLDLG----NLGGNIYLD---LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLL-LFVP-------V 407 (505)
T ss_pred HHHHhcccc----ccCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HHcC-------C
Confidence 111112222 134443322 235567778888999999999999998887766555432221 1111 1
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHH
Q 044122 357 PDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVI 436 (492)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~ 436 (492)
...........+..+.....+.....+.+|..|++.|++++|+.+....+|..++|.+.+ +.+. +. ...+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~-~~--------~~~~ 477 (505)
T TIGR00898 408 DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK-WL--------FLPL 477 (505)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-HH--------hhHH
Confidence 111122222223333334444555667799999999999999999999999999999988 4332 21 1133
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcc
Q 044122 437 LIRNVLRFATLGLIFLVPKGNHS 459 (492)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~ 459 (492)
.+.+++.+++.+...++||++++
T Consensus 478 ~~~~~~~~~~~~~~~~lpet~~~ 500 (505)
T TIGR00898 478 VLFGGLALLAGILTLFLPETKGV 500 (505)
T ss_pred HHHHHHHHHHHHHHHcCcCCCCC
Confidence 34444445555556678887654
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-27 Score=220.97 Aligned_cols=358 Identities=15% Similarity=0.169 Sum_probs=229.2
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
.++..+...+....+- .++.+|++++..|++.+.+.+.+.+ .|+.|+++||+ +||.++.+|..++.+++++.+
T Consensus 43 lmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-----NR~~v~~vG~~iW~~Av~~~~ 116 (493)
T KOG1330|consen 43 LMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-----NRKRVIAVGIFIWTLAVFASG 116 (493)
T ss_pred HHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-----CcceEEeeHHHHHHHHHHHHH
Confidence 5555555444433333 3456999999999999999999887 99999999995 899999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC-hHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG-HQGALG 208 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g-w~~~f~ 208 (492)
++. ..+.++++|.+.|+|-+...++.+++++|.+++ .+|++++++++.+..+|..+|.+.++.+.++.+ |||.|+
T Consensus 117 fs~--~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~--~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 117 FSN--HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD--DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHH--HHHHHHHHHHHhccchhhhcccchhHhhhcCcc--hhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 995 455678889999999999999999999999965 569999999999999999999999999888766 999999
Q ss_pred HHhHhHHHH-HHhhheeeeccCCCccchhhhh--HHHHHHHHHHHHHhcccccchhhHHHHhhhhhhc--ccccccc-ee
Q 044122 209 ILAIPPTLL-IVLGFVIYETRATSHHFEKKKA--IESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVS--ISTHEGQ-FY 282 (492)
Q Consensus 209 i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~ 282 (492)
..+++++++ ++..++++|+++...++.+++. ..+....+++++...++|.+....+-....++.. +...... .+
T Consensus 193 ~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~ 272 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIY 272 (493)
T ss_pred eehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHH
Confidence 999999988 5666778877654322211111 1223455678888888776554433222222211 1111111 11
Q ss_pred eeccCCCCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCC
Q 044122 283 WATDPKAGPAFSQEFVGVIYAL----GAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPD 358 (492)
Q Consensus 283 ~~~~~~~~~g~~~~~~g~~~~~----~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (492)
+.... .|++..+..++..+ +.+|.++|..+.+++.+++.+.....+..+...........+...+. ......
T Consensus 273 ~~~~~---~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~-~~~~~s 348 (493)
T KOG1330|consen 273 YSYEL---IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFP-AFTSSS 348 (493)
T ss_pred HHHHH---hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHH-hhhhHH
Confidence 11111 23443333333333 44455555555555555454434444443333332221111111000 001111
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 044122 359 SFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDI-LGSLISKWGGGIVLHLL 422 (492)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-lg~~i~~~l~g~l~~~~ 422 (492)
.++.++...+.....-....+...+..+.+|+++|.+++++...+.. +|..-+|.+.|.+.|+.
T Consensus 349 ~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 349 MIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred HHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 11222221122222222223333456889999999999999888776 56667777999999985
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=209.61 Aligned_cols=339 Identities=19% Similarity=0.202 Sum_probs=246.3
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+...+.........+.+.++ +|.+..+.+++.+...++..+ +|++|+++||+ +||+.+..+.++..++.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-----g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 9 FLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-----GRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHhhhhhHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----CCchhhHHHHHHHHHHHHHHH
Confidence 34445555566677777766 899999999999999998777 99999999996 677789999999999988888
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
..++. ..++..+++.+++.+...+..++++.|..++ ++|++.+++.+...++|..+++.+++.+.+..+||+.+++
T Consensus 83 ~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 83 FASSL--WLLLVGRFLLGLGGGALYPAAAALIAEWFPP--KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred HhccH--HHHHHHHHHHHcccccccHhHHHHHHHhCCc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 87654 3456778888999888888899999999854 6789999999999999999999999999999999999999
Q ss_pred HhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCC
Q 044122 210 LAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKA 289 (492)
Q Consensus 210 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (492)
.+++.++..+...+++ |.++...+..++..............+..+.
T Consensus 159 ~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 205 (352)
T cd06174 159 LAILGLLLALLLLFLL-------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV-- 205 (352)
T ss_pred HHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh--
Confidence 8887776644433333 2222222222222221111111122222222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCch-hhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRN-LLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
.|.++.+.+.+.....++.+++.++.+++.||+++|+ .+..+..+..+..+.. ... .+.........+
T Consensus 206 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~---------~~~~~~~~~~~~ 274 (352)
T cd06174 206 -LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL-ALA---------PSLALLLVALLL 274 (352)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHh---------ccHHHHHHHHHH
Confidence 4789999999999999999999999999999999998 7776655555432221 111 112222333445
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLG 448 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (492)
.+...+........+..+..|++++++.+|+.+...+++..+++.+.|.+.+..++. . .+.+..++.+++.+
T Consensus 275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~-----~---~~~~~~~~~~i~~i 346 (352)
T cd06174 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG-----G---VFLILAALALLAAL 346 (352)
T ss_pred HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc-----h---HHHHHHHHHHHHHH
Confidence 555556666677788899999999999999999999999999999999999855432 2 44444555555544
Q ss_pred HHh
Q 044122 449 LIF 451 (492)
Q Consensus 449 ~~~ 451 (492)
...
T Consensus 347 ~~~ 349 (352)
T cd06174 347 LLL 349 (352)
T ss_pred Hhe
Confidence 443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-24 Score=208.77 Aligned_cols=341 Identities=11% Similarity=0.078 Sum_probs=227.6
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHH-
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIV- 128 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~- 128 (492)
+..++........+|.+ ++++|+|+.+.|+..+.+.+++.+ +++.|+++||+ +||+.+..+.++..++.+++
T Consensus 36 ~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-----G~r~~l~~g~~~~~~~~~l~~ 109 (438)
T PRK10133 36 FLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITGLFLYALGAALFW 109 (438)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHH
Confidence 55566666666667765 667999999999999999999888 99999999996 78999999999999888775
Q ss_pred --HhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhh-c-----
Q 044122 129 --ALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVH-H----- 200 (492)
Q Consensus 129 --~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~-~----- 200 (492)
..++++ ..+++.++++|+|.+...+..+.++.+..++ ++|.+.+++.+....+|..+++.+++.+.. .
T Consensus 110 ~~~~a~~~--~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~--~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~ 185 (438)
T PRK10133 110 PAAEIMNY--TLFLVGLFIIAAGLGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_pred HHHhcCCH--HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 345543 4567789999999999999999998876533 445556888888999999999988875431 0
Q ss_pred --------------------CChHHHHHHHhHhHH-HHH-HhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhccccc
Q 044122 201 --------------------LGHQGALGILAIPPT-LLI-VLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQ 258 (492)
Q Consensus 201 --------------------~gw~~~f~i~~~~~~-~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 258 (492)
.+||++|+....+.. +.. +.....||.+.++.++ ++ . .+..++.++++++|.
T Consensus 186 ~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~--~~-~---~~~~~~~~~ll~~~~ 259 (438)
T PRK10133 186 QDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD--AK-Q---GSFSASLSRLARIRH 259 (438)
T ss_pred hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc--cc-c---cchhhhHHHHHhCch
Confidence 256667764333332 322 2233344432211110 00 0 111234567788888
Q ss_pred chhhHHHHhhhhhhcccccccce-eeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHH
Q 044122 259 VWKPSLYMFLSFAVSISTHEGQF-YWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYG 337 (492)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~ 337 (492)
++...+..++............. |+..+ .+|+++.+.+.......++.+++.++.+++.||+++|+.+..+..+..
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~---~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~ 336 (438)
T PRK10133 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEE---IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAM 336 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 77655444443332221111111 21222 379999999999999999999999999999999999998877655444
Q ss_pred HhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 338 ISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGI 417 (492)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~ 417 (492)
+..+. ..+ . +.. ..+....+.+++.+..+++..+...+..|+ +.+++.++.. +..+|..++|.+.|.
T Consensus 337 ~~~~~-~~~-~--------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~ 403 (438)
T PRK10133 337 ALCLI-SAF-A--------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGF 403 (438)
T ss_pred HHHHH-HHH-c--------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHH
Confidence 32111 111 1 111 111122344555566677777777777764 4677777775 455788999999999
Q ss_pred HHHhhc
Q 044122 418 VLHLLH 423 (492)
Q Consensus 418 l~~~~g 423 (492)
+.|..|
T Consensus 404 l~~~~g 409 (438)
T PRK10133 404 VSDAAG 409 (438)
T ss_pred HHHhcc
Confidence 998765
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=212.99 Aligned_cols=347 Identities=12% Similarity=0.066 Sum_probs=212.8
Q ss_pred chhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHH---HHhcC
Q 044122 57 GSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALI---VALLG 132 (492)
Q Consensus 57 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~---~~~~~ 132 (492)
.....+.+|.+++|++|.++.++|++.+++.+...+ +|++|+++||+ +||+.++.+....++.... ..+.+
T Consensus 18 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~ 92 (396)
T TIGR00882 18 MSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-----GLKKHLLWIISGLLVLFAPFFIYVFGP 92 (396)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666788888888999999999999999999887 99999999996 6677776655444433222 12222
Q ss_pred Cc---hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 133 KL---PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 133 ~~---~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
.. ......+.++..+++.+...+..+++..+..+ +++...+......++|.++|+.+++.+.+ .+||..|++
T Consensus 93 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~ 167 (396)
T TIGR00882 93 LLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR----NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWL 167 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh----hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHH
Confidence 11 11112333455566665555555555555432 23344556667789999999999998765 599999999
Q ss_pred HhHhHHHHHHhhhe-eeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCC
Q 044122 210 LAIPPTLLIVLGFV-IYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPK 288 (492)
Q Consensus 210 ~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (492)
.+++.++..+..+. .+|+++++...++.+. ++.++..++.++.+|||+++...+..++..............|..+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~ 246 (396)
T TIGR00882 168 GSGFALILMLLLMFAKPKAPSSATVANALGA-NASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFF 246 (396)
T ss_pred HHHHHHHHHHHHHHhCCCCchhhhhhccccc-ccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88877776443333 3433221111000000 000112245678889998876655444333221111112223333332
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
.+.+.+....|.+..+..+...++....+++.||+++|+.+.++..+..+.... ... ..+.+..+....+
T Consensus 247 ~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~-~~~---------~~~~~~~~~~~~l 316 (396)
T TIGR00882 247 ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIG-SSF---------ATTALEVVILKML 316 (396)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-HHh---------cCChHHHHHHHHH
Confidence 223566677888888888888999999999999999999887776655542211 110 1112222222233
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFAL-LMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
.+............+..+..|++.+++..+. .+...++|..+++.++|++.|..|+
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~ 373 (396)
T TIGR00882 317 HAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGF 373 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 3333333333333455677788888887766 6788899999999999999998774
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-24 Score=235.38 Aligned_cols=330 Identities=12% Similarity=0.051 Sum_probs=223.7
Q ss_pred HHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHH---HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 044122 77 STVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVI---AGVLGLVSALIVALLGKLPIALALTCLIGITGGMAI 152 (492)
Q Consensus 77 ~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 152 (492)
...++..+++.+++++ +|++|+++||+ +||+++.. +.+...+..+.....++ .+.+++.+++++++.++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-----~rk~~~~~~~~~~~~~~~~~~~~~~~~s--~~~l~~~~~l~gi~~a~ 124 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-----DKAKLAKILKFAEIGIAALAIYGFHLNS--VPLLFAALFLMGIHSAL 124 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-----cHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHh
Confidence 4578788888999877 99999999996 66765432 22222222222223343 34567789999999999
Q ss_pred HHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHHhhheeeeccCCCc
Q 044122 153 ADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSH 232 (492)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~ 232 (492)
..++..+++.++.++ ++|++++++.+++.++|.++||+++|++....||++.|...++..++..+..+++++++....
T Consensus 125 ~~p~~~a~l~~~~~~--~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1140)
T PRK06814 125 FGPIKYSILPDHLNK--DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAP 202 (1140)
T ss_pred hchHHHHhhHhhcCc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 999999999999854 678999999999999999999999999999999999995554555544556666776543322
Q ss_pred cchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 044122 233 HFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIG 312 (492)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 312 (492)
..+.+ ....++....++.+.++|.++...+..++.+..........+.|..+. +|.++...|++.+...++.+++
T Consensus 203 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~g~~~~~~g~~~~~~~~g~~ig 277 (1140)
T PRK06814 203 DLKID--RNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET---LGGDENVATLFLAVFSVGVAVG 277 (1140)
T ss_pred CCeec--cchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---cCCchHHHHHHHHHHHHHHHHH
Confidence 11001 011122234566777888888776655444433222222333444333 7889999999999999999999
Q ss_pred HHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhh----hh-------hcCCCCcchhhhhhHHHHHHHHHHHHHHH
Q 044122 313 VLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRW----NL-------ALGIPDSFFVITEQCVSHIVSRLRWIPMI 381 (492)
Q Consensus 313 ~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (492)
.++.+++.+|...++.+..+.++..+..+.. .+.... .. .......+..+...++.+++.++...+..
T Consensus 278 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 356 (1140)
T PRK06814 278 SFLASKLSEGRITLLYVPIGALLMGLFGLDL-AFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLF 356 (1140)
T ss_pred HHHHHHHhCCceeeeeehHHHHHHHHHHHHH-HhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999988776665555444333322211 111000 00 00002222233334455566677777888
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 382 VLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 382 ~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
+++++.+|++.+|+++|+.+++.+++..+++.++|.+.+.
T Consensus 357 ~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 357 AALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999998753
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=211.72 Aligned_cols=343 Identities=11% Similarity=0.017 Sum_probs=221.5
Q ss_pred hhhhHhhHHhhhhc-CcChHHHHHHHHHhh--h---hhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhc
Q 044122 59 FFKVVTDYYWKDVQ-KVQPSTVQIYIGLYY--L---PWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALL 131 (492)
Q Consensus 59 ~~~~~~~~~~~~~~-g~s~~~~g~~~s~~~--l---~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~ 131 (492)
..+...+.+.++.+ +.+.++.+.+.+... . +..+ +|+.|+++||+ +||+.+..+.++..++.++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~ 85 (394)
T TIGR00883 11 LYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-----GRKKTLVITLLMMGIGTLLIGLL 85 (394)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-----hhHHHHHHHHHHHHHHHHHHhhC
Confidence 33334444433422 255666666554432 2 2234 79999999996 78888999999999999999988
Q ss_pred CCchH------HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhh-------
Q 044122 132 GKLPI------ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFV------- 198 (492)
Q Consensus 132 ~~~~~------~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~------- 198 (492)
++... ..+++.+++++++.+...+...+++.|..+ +++|++..++...+..+|.++++.++..+.
T Consensus 86 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~ 163 (394)
T TIGR00883 86 PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP--PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA 163 (394)
T ss_pred CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 87642 235677889999988888888888898874 367899999999999999999998876653
Q ss_pred -hcCChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhccccc--chhhHHHHhhhhhhccc
Q 044122 199 -HHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQ--VWKPSLYMFLSFAVSIS 275 (492)
Q Consensus 199 -~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~ 275 (492)
+.++||+.|++.+++.++........+|+++.+.++++++ +..++.++.++++. ++......++.......
T Consensus 164 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T TIGR00883 164 LLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHK------KKRGPIRETLTKHRKPFLLGLGLVIATTTTFYL 237 (394)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccc------cccCCHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 3579999999877766555544455666543221110000 01122344444544 44333333332222221
Q ss_pred ccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 044122 276 THEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALG 355 (492)
Q Consensus 276 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (492)
.....+.+..+. +|.++.+.+.+.....++.+++.++.+++.||+++|+.+.....+..+..+....... .
T Consensus 238 ~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------~ 308 (394)
T TIGR00883 238 ITTYLPTYLTQT---LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL------D 308 (394)
T ss_pred HHHHHHHHHHHh---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh------c
Confidence 222222333222 6888889998888889999999999999999999998776554433322211111111 0
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 044122 356 IPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLM-CIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~i~~~l~g~l~~~~g 423 (492)
....+..+....+.++..+....+......|.+|++.|++++++.. ....+|..++|.++|++.++.|
T Consensus 309 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 309 SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 1122222223334444555666777788899999999999999854 4456888899999999999876
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-22 Score=197.96 Aligned_cols=368 Identities=17% Similarity=0.105 Sum_probs=251.7
Q ss_pred HHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhh
Q 044122 78 TVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVV 156 (492)
Q Consensus 78 ~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 156 (492)
..++..++..+-.++ .|+.|.++|+.+ +||+++.....++.+++..+.+.+...+....+..++..++.....+.
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~----~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vf 146 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGG----RRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVF 146 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccc----cchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665555 999999999853 788888888888888888888764444444555566777888888889
Q ss_pred hhhhhhhccccccC------------------------cccchHHHHHHHHHHHHHHHHHhHhHhhh--------cCChH
Q 044122 157 IDACIARNSIETRA------------------------LAPDMQSLCAFCSGAGSLIGYSSSGFFVH--------HLGHQ 204 (492)
Q Consensus 157 ~~a~~~~~~~~~~~------------------------~r~~~~~~~~~~~~~G~~lg~~l~~~l~~--------~~gw~ 204 (492)
.+++.++++++++. +|+++++.....+++|.++.-.+.-.+.. ..+-|
T Consensus 147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r 226 (477)
T PF11700_consen 147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR 226 (477)
T ss_pred HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence 99999999866442 13899998888888888887776654432 12358
Q ss_pred HHHHHHhHhHHHH-HHhhheeeeccCCCccch-hhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhccccccccee
Q 044122 205 GALGILAIPPTLL-IVLGFVIYETRATSHHFE-KKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFY 282 (492)
Q Consensus 205 ~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (492)
..+.+.++..++. +...+++||++++++.+. +.......++..+.+++..|.|+..+.++..++++-...+.......
T Consensus 227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i 306 (477)
T PF11700_consen 227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGI 306 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887776 566778888765322211 11112233344444555556677777766666555433222222223
Q ss_pred eeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc--hhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcc
Q 044122 283 WATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYR--NLLFFAQLLYGISGMLDLIFILRWNLALGIPDSF 360 (492)
Q Consensus 283 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (492)
|.... +|++..+...+..+..+.+++|+++++++.||+|.| +.+..+.+...+..+.. +........+....+
T Consensus 307 ~a~~~---lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g--~~G~~~~~~g~~~~~ 381 (477)
T PF11700_consen 307 YATEV---LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYG--LFGFWPSFFGLKSPW 381 (477)
T ss_pred HHHHh---cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH--HHHhhhcccCcccHH
Confidence 33333 899999999998999999999999999999999999 77766655554322221 110001122333334
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHH
Q 044122 361 FVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRN 440 (492)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~ 440 (492)
-.+....+.+...+.......++.+++.|+++++..+|++....+..+.+||++.|.+.+..|.. ...+....
T Consensus 382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~-------r~g~~~l~ 454 (477)
T PF11700_consen 382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQ-------RYGFLFLL 454 (477)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------hhHHHHHH
Confidence 44444556666667777777889999999999999999999999999999999999999988732 12344445
Q ss_pred HHHHHHHHHHhhcCCCCcccc
Q 044122 441 VLRFATLGLIFLVPKGNHSNE 461 (492)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~ 461 (492)
++.+++++++.+++.+|.+++
T Consensus 455 ~lf~~gl~ll~~v~~~~g~~~ 475 (477)
T PF11700_consen 455 VLFLIGLILLFFVDVEKGRED 475 (477)
T ss_pred HHHHHHHHHHhhccchhhhhc
Confidence 556677777777877665543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-23 Score=198.90 Aligned_cols=367 Identities=14% Similarity=0.144 Sum_probs=257.7
Q ss_pred HHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHhh
Q 044122 79 VQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKL-PIALALTCLIGITGGMAIADVV 156 (492)
Q Consensus 79 ~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~ 156 (492)
.+.+.+++.++.++ ..+.|+++||+ |||..+.+..++..++.+++.++... ...+++..|++.|+..+.....
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~-----GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~ 136 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRF-----GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGL 136 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHH
Confidence 46667778888887 88999999996 78888988888888877777665432 2346888999999999999999
Q ss_pred hhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhH--hhhcCChHHHHHHHhHhHHHHHHhhheeeeccCCCcc-
Q 044122 157 IDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGF--FVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHH- 233 (492)
Q Consensus 157 ~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~--l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~- 233 (492)
.+-++.|.+|+ +.||.+......+..+|.+++..++.. +-+...|++.+....++.++..+...++||+|+.--.
T Consensus 137 ~pmyl~E~sP~--~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~ 214 (485)
T KOG0569|consen 137 VPMYLTEISPK--NLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIK 214 (485)
T ss_pred HHHHHhhcChh--hhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence 99999999865 679999999999999999999877753 3345569999999988888888889999999874211
Q ss_pred ---chh-h-------------hhHHH----HHH------HHHHHHHhcccccchhhHHHHhhhhhhc-ccccccceeeec
Q 044122 234 ---FEK-K-------------KAIES----VIF------TMKGMCKSIKLPQVWKPSLYMFLSFAVS-ISTHEGQFYWAT 285 (492)
Q Consensus 234 ---~~~-~-------------~~~~~----~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 285 (492)
.++ + ++.+. .++ ....+++++++|..++.....+...... ........+|.+
T Consensus 215 k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst 294 (485)
T KOG0569|consen 215 KGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYST 294 (485)
T ss_pred cCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHH
Confidence 100 0 00000 000 1113678889988887654433333222 222234556666
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhh
Q 044122 286 DPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITE 365 (492)
Q Consensus 286 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (492)
+..++.|++..+..+.+...++..++..+++..+.||.|||++++.+..++.+..+.........+ ....-..+..++.
T Consensus 295 ~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~-~~~~~~~y~~i~~ 373 (485)
T KOG0569|consen 295 SIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSN-SFGSWLSYLCIAA 373 (485)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHH
Confidence 665567999999999999999999999999999999999999999988877765544332222111 1110000112233
Q ss_pred hHHHHHHHHHHHHHHHH-HHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHH
Q 044122 366 QCVSHIVSRLRWIPMIV-LSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRF 444 (492)
Q Consensus 366 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 444 (492)
..+.....+....|... +.+|.+|++.|.+++++...+..+...+-......+.+.+|. +.+++..+.+.
T Consensus 374 ~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~---------~~filF~i~~~ 444 (485)
T KOG0569|consen 374 IFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP---------YVFILFVIPLA 444 (485)
T ss_pred HHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------hhhHHHHHHHH
Confidence 33444444555555544 559999999999999999999999998888888888887772 14444444444
Q ss_pred HHHHH-HhhcCCCCccccc
Q 044122 445 ATLGL-IFLVPKGNHSNEL 462 (492)
Q Consensus 445 ~~~~~-~~~~~~~~~~~~~ 462 (492)
+..+. .+.+||+|.|+..
T Consensus 445 ~~~i~~~~~lPETkgr~~~ 463 (485)
T KOG0569|consen 445 IFLIYLYRYLPETKGRTPY 463 (485)
T ss_pred HHHHHHHHhCcccCCCCHH
Confidence 44444 4589999988753
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-23 Score=197.01 Aligned_cols=363 Identities=18% Similarity=0.186 Sum_probs=235.2
Q ss_pred chhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCch
Q 044122 57 GSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLP 135 (492)
Q Consensus 57 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~ 135 (492)
.+...+.++.|+++ .|.|..|+|.+.++..+...+ +|+||.++||.. ++|+.+.+..++.++..+.....++++
T Consensus 18 ~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~----~~~~~l~~~~l~~~~~~~~~~~~~~f~ 92 (400)
T PF03825_consen 18 YGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFG----SAKRILALLSLLSALALLLLAFSSSFW 92 (400)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----hHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34455667888887 899999999999999888777 889999999962 567788777777777666666666543
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHh-HhHhhhcCC---hHHHHHHHh
Q 044122 136 IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSS-SGFFVHHLG---HQGALGILA 211 (492)
Q Consensus 136 ~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l-~~~l~~~~g---w~~~f~i~~ 211 (492)
. ++...++..+......+..+++.-+..++++++.|+... ++++|.+++... ++.+....+ ....+++.+
T Consensus 93 ~--~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRl----wGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 166 (400)
T PF03825_consen 93 W--LFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRL----WGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAA 166 (400)
T ss_pred H--HHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchh----hhhHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence 2 333344455555555667777777776655566666664 556666666443 233333222 234566666
Q ss_pred HhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCC
Q 044122 212 IPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGP 291 (492)
Q Consensus 212 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (492)
...++.....+.+|+.++++..+++.+ +...++.++++|+|+++...+..++.+.......+....|.. +.
T Consensus 167 ~~~~ll~~~~l~lp~~~~~~~~~~~~~-----~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~----~~ 237 (400)
T PF03825_consen 167 ILSLLLAGFALFLPKTPPKRSAKESVK-----KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQ----EL 237 (400)
T ss_pred HHHHHHHHHHHhCCCCccccccCCCcc-----cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hc
Confidence 555555555566776653222111010 111234568899999887766666554432222221222222 24
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhh----hh
Q 044122 292 A-FSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVIT----EQ 366 (492)
Q Consensus 292 g-~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 366 (492)
| .+....+.+.++..++.++.-...+++.+|++.++++.++.+..++--.+.... .++.+..+. ..
T Consensus 238 gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~---------~~~~~~~~~~~~l~q 308 (400)
T PF03825_consen 238 GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF---------SDPWPFIVALQLLGQ 308 (400)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh---------cCCcHHHHHHHHHHH
Confidence 5 777888888889999999999999999999999999998877666543221111 011112111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHH
Q 044122 367 CVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCID-ILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFA 445 (492)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 445 (492)
.+.+...+........++.+.+|++.|+++.|+++... .+|..+|..++|+++|+.|.+. .+. ...++.+++++.++
T Consensus 309 ~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~-~~~-~~~~~~v~a~~~~~ 386 (400)
T PF03825_consen 309 LLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG-MFD-WSAVFLVFAVMALV 386 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh-hhh-HHHHHHHHHHHHHH
Confidence 35677777888888889999999999999999998865 6999999999999999988542 121 22344444544444
Q ss_pred HHHHH
Q 044122 446 TLGLI 450 (492)
Q Consensus 446 ~~~~~ 450 (492)
..+..
T Consensus 387 ~~~~f 391 (400)
T PF03825_consen 387 ILVLF 391 (400)
T ss_pred HHHHH
Confidence 44433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-23 Score=201.58 Aligned_cols=343 Identities=13% Similarity=0.093 Sum_probs=226.0
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+..|+..++.++.+|.+ ++++|.|..+.|++.+.+.+++.+ .++.|+++||+ +||+.++.+.++.+++.+++.
T Consensus 13 ~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-----G~r~~~~~g~~l~~~g~~l~~ 86 (410)
T TIGR00885 13 ALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-----SYKAGILLGLFLYALGAFLFW 86 (410)
T ss_pred HHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHH
Confidence 55566666666677766 556999999999999999999888 99999999996 788899999999888877765
Q ss_pred hcC-CchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhh---------
Q 044122 130 LLG-KLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVH--------- 199 (492)
Q Consensus 130 ~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~--------- 199 (492)
.+. ..+...++..+++.++|.+...+..+.++.+..++ ++|++.+++.+...++|..+|+.+++.+..
T Consensus 87 ~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 87 PAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE--STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 432 12344566778999999999999888888887744 457788898889999999999999887642
Q ss_pred -----------------cCChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhh
Q 044122 200 -----------------HLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKP 262 (492)
Q Consensus 200 -----------------~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (492)
..+||++|++.+++.++..+...+.++++.+++++ ++ .+.+ ++.++.+|+|.++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~--~~--~~~~---~~~~~~~~~~~~~~~ 237 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDA--KQ--ISFS---ASLSRLARIRHYREG 237 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--cc--ccch---hhHHHHHhChhHHHH
Confidence 23699999988887666543333333222111111 10 1111 233466788888776
Q ss_pred HHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhh
Q 044122 263 SLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGML 342 (492)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~ 342 (492)
.+..+++..........+..|..+. ..+.+....+...+....+..+|.++.+++.||.++|+.+.+......+..++
T Consensus 238 ~l~~f~yvg~e~~~~s~l~~y~~~~--~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll 315 (410)
T TIGR00885 238 VIAQFFYVGVQIMCWTFIIQYAVRL--IPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLG 315 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 6666665443322222122222111 12445554554555566778899999999999999999877665554443221
Q ss_pred HHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044122 343 DLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLL 422 (492)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~ 422 (492)
. .. .+.....+ ...+.+++....++...++..+..+++.+....++..+. +|.++.|.+.|++.|..
T Consensus 316 ~-~~---------~~~~~~~~-~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 316 S-IF---------AGGHVGLY-CLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred H-HH---------cCChHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 1 11 11111111 112333344444566667778888877655455554444 99999999999999976
Q ss_pred c
Q 044122 423 H 423 (492)
Q Consensus 423 g 423 (492)
|
T Consensus 383 ~ 383 (410)
T TIGR00885 383 E 383 (410)
T ss_pred c
Confidence 4
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=203.51 Aligned_cols=327 Identities=15% Similarity=0.103 Sum_probs=237.7
Q ss_pred cCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 044122 72 QKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGM 150 (492)
Q Consensus 72 ~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 150 (492)
.+-+.+++|++++...+...+ +|+.|.++||+ ++|-.|++|..+...+++++++..++. .+++.|.++++|.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-----Gy~ipm~~Gl~vmf~sTilFafg~sy~--~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-----GYKIPMVAGLFVMFLSTILFAFGNSYP--MLFVARSLQGVGS 173 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHh-----ccccHHHHHHHHHHHHHHHHHHcchhH--HHHHHHHHhhhhH
Confidence 556788999999999988776 99999999997 678888899999999999999999765 4778899999999
Q ss_pred HHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHHhhheeeeccCC
Q 044122 151 AIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRAT 230 (492)
Q Consensus 151 ~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~ 230 (492)
++.++...+++++..+++ ++|++++|......++|.++||++||++++..|.+.+|.+.+++.++-..+.+++-|+.+.
T Consensus 174 A~~~tsglamlAd~f~~d-~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPED-NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHhhhHHHHHHHcccc-hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 999999999999999876 5799999999999999999999999999999999999999999988875555544444332
Q ss_pred Cc-cchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHH
Q 044122 231 SH-HFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVAS 309 (492)
Q Consensus 231 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 309 (492)
+. ..+++ ..+++++++|.++.........+.........+..|..+. ..-+..+.|..+....+..
T Consensus 253 ~~~~~~~~----------~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~---m~~p~w~~G~~fLp~~~~y 319 (464)
T KOG3764|consen 253 DPDSTEQG----------TPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET---MFTPGWEVGLAFLPASLSY 319 (464)
T ss_pred CccccccC----------ccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh---ccCCCcceeeeecccccch
Confidence 22 11111 3578889999888765544443333223333445555554 4445568888888889999
Q ss_pred HHHHHHHHHHHccCCCch-hhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 044122 310 IIGVLIYHKTLKDYPYRN-LLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLC 388 (492)
Q Consensus 310 ~~~~~~~~~l~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (492)
.++..+.+++.||++..+ .......+..........+...+. ..+.......+.........+|...+..+..
T Consensus 320 ~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~------~L~vp~~~l~~~i~~~dasl~P~l~~lvd~r 393 (464)
T KOG3764|consen 320 AIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA------QLWVPNFGLGFGIGLADASLIPTLGYLVDPR 393 (464)
T ss_pred hccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH------HHhhhhHHHHHHHHHHHHHHhhhhHHhcchh
Confidence 999999999999998433 333222222221122222222111 1112112222333334555667666665444
Q ss_pred CCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044122 389 PRG---IEGTFFALLMCIDILGSLISKWGGGIVLHLLHVT 425 (492)
Q Consensus 389 ~~~---~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~ 425 (492)
..+ .-|.++++.....++|.++||.++|.+.+..|.+
T Consensus 394 h~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~ 433 (464)
T KOG3764|consen 394 HVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFE 433 (464)
T ss_pred hccccceeeeHHHHHHHHHHHhhhccccccchheeehhHH
Confidence 434 7789999999999999999999999999988854
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=211.23 Aligned_cols=367 Identities=13% Similarity=0.156 Sum_probs=253.5
Q ss_pred hhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 044122 69 KDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGIT 147 (492)
Q Consensus 69 ~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (492)
+++++++..|.+++.+.+..++++ +.+.|+++||+ +-|+++..+.++.++++++..++.+.....+++.|+++|
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-----G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-----GARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQG 139 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhH
Confidence 346899999999999999999998 88899999996 567788889999999999998887666556788899999
Q ss_pred HHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhc-CChHHHHHHHhHhHHHHHHhhh-eee
Q 044122 148 GGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHH-LGHQGALGILAIPPTLLIVLGF-VIY 225 (492)
Q Consensus 148 ~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~-~gw~~~f~i~~~~~~~~~~~~~-~~~ 225 (492)
++.+...++...+...+. +++||++..++...+..+|.+++.+++|++.+. +||+.+|++.++++++..++++ +..
T Consensus 140 l~~g~~~pa~~~i~~~W~--P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWA--PPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHhHHHhhhhceeeeEC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998 557899999999999999999999999999998 9999999999999999866554 444
Q ss_pred eccCCCccchhhhhHHHHHH-----H-----HHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCH
Q 044122 226 ETRATSHHFEKKKAIESVIF-----T-----MKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQ 295 (492)
Q Consensus 226 e~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 295 (492)
|+|.+.+.-. +++.+.+.+ . .-..+++++++.+|...+..+..+.....+....+.|..+. +|+|.
T Consensus 218 d~P~~h~~is-~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~V---L~f~v 293 (466)
T KOG2532|consen 218 DSPSKHPNIS-EKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEV---LGFDV 293 (466)
T ss_pred CCcccCCCCC-HHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---hCCCh
Confidence 4444322110 111111110 0 11367888999999887776665554443333334455454 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCc------hhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 296 EFVGVIYALGAVASIIGVLIYHKTLKDYPYR------NLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 296 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
.+.|++.++..+...+..+++|+++||...| +.-....+......+.++.+. +..-......+....+.
T Consensus 294 ~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~-----~~~~~~~~~a~~~l~~~ 368 (466)
T KOG2532|consen 294 RETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLA-----FTSDEHRLLAVILLTIA 368 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeee-----ecCCCcchHHHHHHHHH
Confidence 9999999999999999999999999987553 111111111111111111110 11111111222222222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHH
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGL 449 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (492)
....++.......-..+.+ +++.+..+|+.+.+.++...++|.+.|.+.+ -+ .......++.+.+++.+++.++
T Consensus 369 ~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~----t~~eW~~VF~i~a~i~~~~~i~ 442 (466)
T KOG2532|consen 369 IGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN----TREEWRIVFLIAAGILIVGNII 442 (466)
T ss_pred HHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC----CHHHHHHHHHHHHHHHHHhchh
Confidence 2222333322222223334 4889999999999999999999999998875 11 2334455777777777777655
Q ss_pred HhhcCCCC
Q 044122 450 IFLVPKGN 457 (492)
Q Consensus 450 ~~~~~~~~ 457 (492)
....-+.+
T Consensus 443 f~~f~s~e 450 (466)
T KOG2532|consen 443 FLFFGSGE 450 (466)
T ss_pred eeEeecCc
Confidence 55554433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=202.40 Aligned_cols=375 Identities=11% Similarity=0.093 Sum_probs=230.1
Q ss_pred chhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHH-HHHHHHHHHHHH-Hhc--
Q 044122 57 GSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVI-AGVLGLVSALIV-ALL-- 131 (492)
Q Consensus 57 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~-~~~~~~~~~~~~-~~~-- 131 (492)
.+...+..+.+++|+.|+|++|+|.+.++..+...+ +|+.|.++||.+ .||..+.. +.++...+.+.. .+.
T Consensus 23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg----~kK~Ll~~i~~l~~l~~pff~~v~~pl 98 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLG----LKKHLLWFIAILLLLFGPFFIYVFGPL 98 (412)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCT----TCSHHHHHHHHHHHTCHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhh----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556678899888999999999999998887666 999999999973 45554433 222222222222 121
Q ss_pred --CCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 132 --GKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 132 --~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
.|.. ...++..+..++......+..++++.+..+++.-|.|++. .++++|.+++..++|.+.+ .+.+..||+
T Consensus 99 l~~n~~-lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R----~wGSig~ai~s~~~G~L~~-i~p~~~fwi 172 (412)
T PF01306_consen 99 LQSNFW-LGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRAR----MWGSIGFAIASLLAGILFN-INPNIIFWI 172 (412)
T ss_dssp HHTT-H-HHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHH----HHhhHHHHHHHHHhheeee-eCccHHHHH
Confidence 2221 1122211222333334456678887777765555566665 5889999999999999886 466788888
Q ss_pred HhHhHHHHHHh-hheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCC
Q 044122 210 LAIPPTLLIVL-GFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPK 288 (492)
Q Consensus 210 ~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (492)
....+++..+. .+.-|+.+++.+..+.++ .++.+...++..+++|+|++|...++.......+..++.....|....-
T Consensus 173 ~s~~~~il~lll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f 251 (412)
T PF01306_consen 173 ASAAAIILLLLLLLLKPDVPPQAEVADALG-AKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF 251 (412)
T ss_dssp HHHHHHHHHHHHHSS---SSSSS-SSTTSS-S------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCCcCchhhhhhcccc-cCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76666655433 333333332221111111 1111223477889999999998877665544433333322222222222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
++.+.++..+|.+.++..+..++...+.+++.+|+|.|+.++++..++.+--... . -.++.+.+.....+
T Consensus 252 ~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~-~---------~~~~~~~i~~~klL 321 (412)
T PF01306_consen 252 QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGS-G---------FATNPWVISLIKLL 321 (412)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-H---------T--SHHHHHHHHHH
T ss_pred cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHH-h---------hhcchHHHHHHHHH
Confidence 2245566789999999999999999999999999999999998877766542211 0 12344445555667
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALL-MCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATL 447 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 447 (492)
.+.-..+...+..-++++..|++..++.+.+. +...++|..+.+.+.|.++|+.|... ..+..+.+.....+
T Consensus 322 H~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~-------tylimg~iv~~~~l 394 (412)
T PF01306_consen 322 HALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQH-------TYLIMGLIVLPFTL 394 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHH-------HHHHHHHHHHHHHH
Confidence 77777777888888999999999999999885 57778999999999999999998532 12223333333334
Q ss_pred HHHhhcCCCCcc
Q 044122 448 GLIFLVPKGNHS 459 (492)
Q Consensus 448 ~~~~~~~~~~~~ 459 (492)
+..+.+++++++
T Consensus 395 i~~f~l~~~~~~ 406 (412)
T PF01306_consen 395 ISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHS--SSST
T ss_pred HheeeecCCCcc
Confidence 444566655443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-24 Score=206.80 Aligned_cols=330 Identities=15% Similarity=0.039 Sum_probs=212.6
Q ss_pred hhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcC-Cch
Q 044122 58 SFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLG-KLP 135 (492)
Q Consensus 58 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~-~~~ 135 (492)
....+..|.++++++|+|+.+++++.+++.++..+ ++++|+++||+ +||+.++.+.++..++.+++++++ ++.
T Consensus 18 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (366)
T TIGR00886 18 FAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-----GPRYTTTLSLLLLAIPCLWAGLAVQSYS 92 (366)
T ss_pred HHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34455666567778999999999999999999887 99999999996 788889899999999988888887 544
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhh----------cCChHH
Q 044122 136 IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVH----------HLGHQG 205 (492)
Q Consensus 136 ~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~----------~~gw~~ 205 (492)
.+++.+++.+++.+.. ....+++.+..+ +++|++..++.....++|..+++.+++.+.. +.+||+
T Consensus 93 --~~~~~~~~~g~~~~~~-~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~ 167 (366)
T TIGR00886 93 --VLLLLRLFIGIAGGSF-ASCMPWISFFFP--KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGW 167 (366)
T ss_pred --HHHHHHHHHHHhchhh-HhHHHHHHHhcC--HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3556788888876544 446677788774 3678999998887788888888777766554 348999
Q ss_pred HH-HHHhHhHHHH-HHhhheeeeccCCCccchhhhhH----HHHHHHHHHHHHhcccccchhhHHHHhhhhhhccccccc
Q 044122 206 AL-GILAIPPTLL-IVLGFVIYETRATSHHFEKKKAI----ESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEG 279 (492)
Q Consensus 206 ~f-~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (492)
.| +..+++..+. .+...+.+|+++++.++++.+.. ...++..++.++.+++|+++...+..++...........
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (366)
T TIGR00886 168 AFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSI 247 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 99 4445554444 44445555544322111100000 000111224566788888776655444433222222222
Q ss_pred ceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCc
Q 044122 280 QFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDS 359 (492)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (492)
..+|..+. +|+++.+.+.+.....+..+++.++.+++.||+++|+....+.......... +.+... .....
T Consensus 248 ~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~ 318 (366)
T TIGR00886 248 FAMFFKDQ---FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFL-VVLGLV-----SPLSL 318 (366)
T ss_pred HHHHHHHH---cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHH-HHhcCC-----CcchH
Confidence 33343333 6889999998888888899999999999999999988776654443332111 111110 00011
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 044122 360 FFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILG 407 (492)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg 407 (492)
...+....+.....+........+..+..| +++|+++|+.++..++|
T Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 319 AVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 111222223333344444555566677776 79999999998888775
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-23 Score=203.37 Aligned_cols=362 Identities=11% Similarity=0.085 Sum_probs=220.6
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhh-hhhhhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLP-WVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~-~~~~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+...+.+......++.|+++++|.+.++.+++.+.+... +...++.|+++||+ ++||+.++.+.++..++.+.++
T Consensus 24 ~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~----~G~r~~~~~g~~~~~~g~~~~~ 99 (489)
T PRK10207 24 LWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHL----LGTKRTIVLGAIVLAIGYFMTG 99 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhc----cchHHHHHHHHHHHHHHHHHHH
Confidence 334444455556677788888999999999999888854 55588999999993 2789999999999999999888
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
++++... .+++.+.++++|.+...+...+++.|..++++++|.+..++++.+.++|..+||.+++++.++.|||+.|++
T Consensus 100 ~~~~~~~-ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i 178 (489)
T PRK10207 100 MSLLKPD-LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL 178 (489)
T ss_pred Hhccchh-HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 8765332 244567888999988888888999998866544678889999999999999999999999999999999998
Q ss_pred HhHhHHHHHHhhheeeeccC----CC-cc-chhhhhH-----------------H--HHHHH--------------H--H
Q 044122 210 LAIPPTLLIVLGFVIYETRA----TS-HH-FEKKKAI-----------------E--SVIFT--------------M--K 248 (492)
Q Consensus 210 ~~~~~~~~~~~~~~~~e~~~----~~-~~-~~~~~~~-----------------~--~~~~~--------------~--~ 248 (492)
.++..++.++.+.+.++..+ ++ ++ .+.+... + ..... . .
T Consensus 179 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 258 (489)
T PRK10207 179 CGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAF 258 (489)
T ss_pred HHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 75533333333333332111 11 10 0000000 0 00000 0 0
Q ss_pred HHHHhcccccchhhHHH--Hhhhhhhcccccccceeeecc-CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 044122 249 GMCKSIKLPQVWKPSLY--MFLSFAVSISTHEGQFYWATD-PK-AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYP 324 (492)
Q Consensus 249 ~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~ 324 (492)
...+.+|+|.+....++ ..+..............+..+ .. +..|+.- ..+.+.....+..++.+++.+++.+|.+
T Consensus 259 ~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~ 337 (489)
T PRK10207 259 KLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLG 337 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHh
Confidence 00122333333222211 111222222222222223322 11 1122221 1223334455556677778888999988
Q ss_pred Cchh-------hHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 044122 325 YRNL-------LFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFF 397 (492)
Q Consensus 325 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 397 (492)
+|+. +.++.++..++.+............-+....+..+....+.+....+..++....+.+.+|++.+|.++
T Consensus 338 ~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~ 417 (489)
T PRK10207 338 SKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFIL 417 (489)
T ss_pred hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHH
Confidence 7763 445544444332211100000000001111223334455666677777888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044122 398 ALLMCIDILGSLISKWGGGIV 418 (492)
Q Consensus 398 g~~~~~~~lg~~i~~~l~g~l 418 (492)
|+++...++|+.+|..++...
T Consensus 418 g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 418 GMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988888877655
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-23 Score=196.95 Aligned_cols=326 Identities=15% Similarity=0.085 Sum_probs=213.9
Q ss_pred hhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 044122 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALA 139 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (492)
.+.+|.+.+ ++|.|.++++++.+++.+++.+ +++.|+++||+ +||+.+..+.++..++.+.+ ..++. ..+
T Consensus 20 ~~~lp~l~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~-~~~~~--~~l 90 (355)
T TIGR00896 20 GPLLPQIRS-ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-----GEERSVAAGLLLIAAGILIR-SAPGT--ALL 90 (355)
T ss_pred cccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----CchHHHHHHHHHHHHHHHHH-HhccH--HHH
Confidence 445666554 5999999999999999999887 99999999996 67888888887777776665 55543 345
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcC--ChHHHHHHHhHhHHHH
Q 044122 140 LTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHL--GHQGALGILAIPPTLL 217 (492)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~--gw~~~f~i~~~~~~~~ 217 (492)
+..+++.+++.+...+.....+.+..+ ++|+++.+..+.+.++|..+++.+++.+.++. +||+.|.+.++..++.
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFP---QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 677888899888877777777766653 46899999999999999999999998887765 3999988766544333
Q ss_pred HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHH
Q 044122 218 IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEF 297 (492)
Q Consensus 218 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 297 (492)
.. .++|+.++++++.+ +.. ....++.+|+|.++...+..++............+.+.. +.|+++.+
T Consensus 168 ~~--~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~----~~g~~~~~ 233 (355)
T TIGR00896 168 LL--AWIPQVRRRVAANQ-TTT-------RLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILI----SHGASAAT 233 (355)
T ss_pred HH--HHhhhhccccCCCC-CCC-------CCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCCHHH
Confidence 22 22343322211110 000 012345667777776554433332222222222222322 25889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCC-chhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHH
Q 044122 298 VGVIYALGAVASIIGVLIYHKTLKDYPY-RNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLR 376 (492)
Q Consensus 298 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (492)
.+.+.+...++.+++.++.+++.||++. |+....+..+..+.. ....+... ..... ...+.++..+..
T Consensus 234 ~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~--~~~l~g~~~g~~ 302 (355)
T TIGR00896 234 AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL-CGLLFAPM--------HGLWA--WALVLGLGQGGA 302 (355)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH-HHHHHhhh--------hHHHH--HHHHHHHhhhhH
Confidence 9999999999999999999999999954 444444444333322 11111110 00011 112333333343
Q ss_pred HHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 377 WIPMIVLSTR-LCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 377 ~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
.........+ ..+++++++.+++.+...+++..++|.+.|++.|+.|
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 303 FPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344443 3445777999999999999999999999999999876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=225.21 Aligned_cols=336 Identities=15% Similarity=0.119 Sum_probs=222.1
Q ss_pred HhhHHhhhhcCcC--hHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHh---cCCchH
Q 044122 63 VTDYYWKDVQKVQ--PSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVAL---LGKLPI 136 (492)
Q Consensus 63 ~~~~~~~~~~g~s--~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~---~~~~~~ 136 (492)
.+..++..+++.+ ....+++.+++.+++.+ +|++|+++||+ +||+.++++.++.++..+++.+ .++ .
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-----grk~~l~~~~~~~~~~~~~~~~~~~~~~--~ 103 (1146)
T PRK08633 31 LIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-----SKNRVIRIVKLFEVGLTLLIVLAYYLGW--F 103 (1146)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHcc--H
Confidence 3343443446554 44578889999999877 99999999996 7888888777665554444332 343 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhc--------C-ChHHHH
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHH--------L-GHQGAL 207 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~--------~-gw~~~f 207 (492)
+.+++.+++.|++.+...+...+++.++.++ ++|++++++...+.++|.++|+.+++++... + +|++.+
T Consensus 104 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~ 181 (1146)
T PRK08633 104 WLAFAVTFLLGAQSAIYSPAKYGIIPELVGK--ENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPA 181 (1146)
T ss_pred HHHHHHHHHHHHHHHhhchHHHhhhHHhcCc--ccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHH
Confidence 4567788999999999999999999999854 6799999999999999999999999998876 2 344444
Q ss_pred HHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeecc
Q 044122 208 GILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATD 286 (492)
Q Consensus 208 ~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (492)
.+..+...+. ++..+.+||.+......++++.....++....++.++++|.++..++..++............+.+...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1146)
T PRK08633 182 GLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKE 261 (1146)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4443333333 444556676554322210011011112223445566778877766544433332222121222233333
Q ss_pred CCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhh
Q 044122 287 PKAGPAFSQE-FVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITE 365 (492)
Q Consensus 287 ~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (492)
. +|++.. ..+++.+...++.+++.++.+++.||+++++.+.++.++..+..+. +.+. ...+..+..
T Consensus 262 ~---~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~ 328 (1146)
T PRK08633 262 V---LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFL-LPTA---------PSLASVLVL 328 (1146)
T ss_pred H---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHH-HHHh---------hhHHHHHHH
Confidence 2 688888 8999999999999999999999999999888776665544432211 1111 111222233
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 366 QCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
.++.++..+....+..+++.+.+|++.+|+++|+.+++.++|..+++.+++.+..
T Consensus 329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 329 FFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666777888999999999999999999999999888888776654
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-22 Score=191.93 Aligned_cols=392 Identities=13% Similarity=0.106 Sum_probs=237.4
Q ss_pred hhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhcccc-ccCCCCchhHHHHHHHHHHHHHHHHHhcCCch
Q 044122 58 SFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAF-PIKGYHRRPYFVIAGVLGLVSALIVALLGKLP 135 (492)
Q Consensus 58 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~-~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~ 135 (492)
++....+++|+++ +|.++.+.+++..+..+...+ +|++|.++||. .|+| |||++++.+.+...++.++++++++..
T Consensus 21 ~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~G-RRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 21 ALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFG-RRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCC-ChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 4445566777755 999999999998888887665 99999999986 5567 888888888888888888888766531
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHh--h
Q 044122 136 ---------------IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFF--V 198 (492)
Q Consensus 136 ---------------~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l--~ 198 (492)
...++....+..++......+..++++|..++++++++.+.++.....++|.++|+.++++. .
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~ 178 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY 178 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 01223333344556677777889999999977655557788888899999999999999875 2
Q ss_pred hcC-------------ChHHHHHHHhHhHHHH-HHhhheeeeccCCCccch---h--hhhHHHHHHHHHHHHHhccc--c
Q 044122 199 HHL-------------GHQGALGILAIPPTLL-IVLGFVIYETRATSHHFE---K--KKAIESVIFTMKGMCKSIKL--P 257 (492)
Q Consensus 199 ~~~-------------gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~---~--~~~~~~~~~~~~~~~~~l~~--~ 257 (492)
+.+ +.|..|++.++..++. .+.++.++|++...+++. + +.++.+....++++++.+++ |
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~ 258 (477)
T TIGR01301 179 KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPR 258 (477)
T ss_pred HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCH
Confidence 222 5688999988877776 567778888764221110 0 00011111223444454444 5
Q ss_pred cchhhHHHHhhhhhhcccccccce------eeeccCCCCCCCCHH-HHHHH-HHHHHHHHHHHHHHHHHHHccCCCchhh
Q 044122 258 QVWKPSLYMFLSFAVSISTHEGQF------YWATDPKAGPAFSQE-FVGVI-YALGAVASIIGVLIYHKTLKDYPYRNLL 329 (492)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~-~~g~~-~~~~~~~~~~~~~~~~~l~~r~~~~~~~ 329 (492)
.+++..+..++.++..+.+..-.. .|..+..++..+++. ..|.. .....+...+.+++..++.+|+|.||..
T Consensus 259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~ 338 (477)
T TIGR01301 259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRL 338 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 567776666666554322111000 111111000111111 12332 2455666667788889999999865444
Q ss_pred -HHHHHHHHHhhhhHHHHHHhhhh---h------cCCCC---cchhhhhhHHHHHHHHHHHHHHHHHHHhcCCC--ChhH
Q 044122 330 -FFAQLLYGISGMLDLIFILRWNL---A------LGIPD---SFFVITEQCVSHIVSRLRWIPMIVLSTRLCPR--GIEG 394 (492)
Q Consensus 330 -~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g 394 (492)
.++.++.+++. ....+...... . .-.+. .+..+......++.....+..-++++++..++ +..|
T Consensus 339 ~~~s~~~~~~~l-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G 417 (477)
T TIGR01301 339 WGIVNIILAICL-AATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQG 417 (477)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCc
Confidence 55544444432 22222221100 0 00011 12222222233333333332234566777774 5669
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHH-hhcCCCCc
Q 044122 395 TFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLI-FLVPKGNH 458 (492)
Q Consensus 395 ~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 458 (492)
..+|+.|.+..+.+.+.....|.+.+.+|-++ ...+.+++++.+++.+.. +.+|+.+.
T Consensus 418 ~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~------~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 418 LSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGN------LPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999777776322 125566666666665554 57887653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-20 Score=174.69 Aligned_cols=371 Identities=15% Similarity=0.120 Sum_probs=254.9
Q ss_pred hhhcCcChHHHHHHHHHhhhhhhhhhHHhhhccccc-cCCCCchhHHHHHHHHHHHHHHHHHh-----cC-------Cch
Q 044122 69 KDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFP-IKGYHRRPYFVIAGVLGLVSALIVAL-----LG-------KLP 135 (492)
Q Consensus 69 ~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~-~~g~~Rk~~l~~~~~~~~~~~~~~~~-----~~-------~~~ 135 (492)
.+|++++...++...++..+..-.+|.+|..||+.+ .+|+||.||+..|.++...+..+..+ .. +..
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 355999999999888887776667999999999997 89999999999999888776555443 22 122
Q ss_pred H--HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHH---HH
Q 044122 136 I--ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALG---IL 210 (492)
Q Consensus 136 ~--~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~---i~ 210 (492)
. ........+.|+|.....++..++..|.+++ ++|+++.++.+....+|.+++..+.+.+.+.++.....- ..
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e--~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPE--ERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH--hhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 2 2344455677888888888999999999854 679999999999999999999999999988887543332 22
Q ss_pred hHhHHHHHHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCC
Q 044122 211 AIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAG 290 (492)
Q Consensus 211 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (492)
+++.++..+...+-.|++.++....++++.+++++. ++++..+|+.++..++.++....+..-+..+-.|-.+.
T Consensus 165 a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a---~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~V--- 238 (403)
T PF03209_consen 165 ALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREA---WRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEV--- 238 (403)
T ss_pred HHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHH---HHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHH---
Confidence 333333323333344444333221112222344444 34455789888888777776554332222233444444
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLK-DYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
+|++..+...++...+.+.++|..+.+++.. |.++++...+++.....+.. .+.+.. . ..+.+.......+.
T Consensus 239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~-lii~a~----~--~~~~~~~~~~~~l~ 311 (403)
T PF03209_consen 239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA-LIILAG----P--LGSPWLFRPGVFLL 311 (403)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH-HHHHHH----h--cccchHHHHHHHHH
Confidence 8999999999999999999999999998876 55666666666555554322 222221 1 11222333334566
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cCcchhHHHHHHHHHHHHHHH
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTR--TDYRNLWLVILIRNVLRFATL 447 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~ 447 (492)
++..++..........+..++++.|..+|.+...+.++..++..++|.+.|....-. +....+..++.+-++..++++
T Consensus 312 G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~ 391 (403)
T PF03209_consen 312 GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAAL 391 (403)
T ss_pred HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 667777777777888999999999999999999999999999999999998654322 233445556666666666666
Q ss_pred HHHhhcC
Q 044122 448 GLIFLVP 454 (492)
Q Consensus 448 ~~~~~~~ 454 (492)
..+..+.
T Consensus 392 ~ll~~l~ 398 (403)
T PF03209_consen 392 VLLGRLD 398 (403)
T ss_pred HHHHHhh
Confidence 5555444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-23 Score=202.10 Aligned_cols=390 Identities=14% Similarity=0.125 Sum_probs=267.4
Q ss_pred hccCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhH
Q 044122 35 SQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPY 113 (492)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~ 113 (492)
-.|+|.++...++...+.+|+...+. ...+. ++++++.+.++++|+.++......+ .|+.+.+.||+ +.|++
T Consensus 41 GG~gWvV~~a~fl~~~~~~g~~~~~G-v~~~~-~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-----g~R~v 113 (509)
T KOG2504|consen 41 GGWGWVVVFASFLVNLSTDGLINSFG-LLFEE-LMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-----GCRTV 113 (509)
T ss_pred CCeeeeeeHhHHHHHHhhhcchheeh-hhHHH-HHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-----CchHH
Confidence 45799999999888878888887664 44444 4556999999999999998876666 99999999996 78999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHh
Q 044122 114 FVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSS 193 (492)
Q Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l 193 (492)
++.|.++..++.++..++++.+. +++..-++.|+|.++...+....+..+.+ ++|+.+.++...+..+|.++-|.+
T Consensus 114 ~i~G~~v~~~g~~lssF~~~i~~-l~lt~gvi~G~G~~~~~~paiviv~~YF~---kkR~lA~Gia~~GsG~G~~~~~~l 189 (509)
T KOG2504|consen 114 MIAGGLVAALGLLLSSFATSLWQ-LYLTFGVIGGLGLGLIYLPAVVILGTYFE---KKRALATGIAVSGTGVGTVVFPPL 189 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHhhccchhhhcchhhhhhhHhH---HHHHHHHhhhhccCCcceeeHHHH
Confidence 99999999999999999998654 45566688899999988888888887764 358999999999999999999999
Q ss_pred HhHhhhcCChHHHHHHHhHhHHHHHHhhheeee-ccCC------------------------Cc-cch--hhh-------
Q 044122 194 SGFFVHHLGHQGALGILAIPPTLLIVLGFVIYE-TRAT------------------------SH-HFE--KKK------- 238 (492)
Q Consensus 194 ~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e-~~~~------------------------~~-~~~--~~~------- 238 (492)
..++.+.+|||+.+++.+.+.+-.++.....++ .++. .. ... ..+
T Consensus 190 ~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (509)
T KOG2504|consen 190 LKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLA 269 (509)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchh
Confidence 999999999999999988887665444443433 1110 00 000 000
Q ss_pred h----HHHHH---HHHHHH---HHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHH
Q 044122 239 A----IESVI---FTMKGM---CKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVA 308 (492)
Q Consensus 239 ~----~~~~~---~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 308 (492)
. .++.. .+.... ++++++|.++...+...+....... ..++...+.+..|+++.+.+.+.++.++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~----p~~~l~~~~~~~g~~~~~aa~l~Siigi~ 345 (509)
T KOG2504|consen 270 TLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNV----PFVYLPSYAKSLGLSSNDAAFLLSIIGVS 345 (509)
T ss_pred hhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCCChhhhHHHHHHHHHh
Confidence 0 00000 010111 4778888887776655554432221 12223333345899999999999999999
Q ss_pred HHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 044122 309 SIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLC 388 (492)
Q Consensus 309 ~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (492)
.+++.++.|.+.|+...++.......+... ++.. .+.+. ............+.+++.+....-......+.+
T Consensus 346 ~i~gRi~~G~laD~~~~~~~~~~~~~ll~~-gl~~-~~~p~------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~ 417 (509)
T KOG2504|consen 346 DIIGRIILGLLADKPGIRALVLFLLTLLIA-GLAR-LFLPF------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLV 417 (509)
T ss_pred hhhhhhhhhhhcCccccchHHHHHHHHHHH-HHHH-HHHHH------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999998854444333222221 1111 11110 011122233334445444444443445678999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhcC
Q 044122 389 PRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVP 454 (492)
Q Consensus 389 ~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (492)
+.++-..++|+...+..++..+||.+.|++.|..| +|.. .+..+.++.+++....+..|
T Consensus 418 g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg----~Y~~---~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 418 GLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG----NYDH---AFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC----Ceee---ehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999999999999888766 2333 34444555555554444444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=192.44 Aligned_cols=363 Identities=12% Similarity=0.094 Sum_probs=215.3
Q ss_pred hcccccchhhhhHhhHHhhhh--cCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDV--QKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALI 127 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~ 127 (492)
+...+.+......++.|++++ +|.+..+.+++.+.+.+...+ ++++|+++||+ ++||+.+.++.++..++.++
T Consensus 20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~----~G~~~~l~~~~~~~~~g~~~ 95 (475)
T TIGR00924 20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRV----WGTKKTMVLGGIVLMLGHFM 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhh----cchHHHHHHHHHHHHHHHHH
Confidence 344444445566788888876 899999999999999987766 88999999993 26888999999999999888
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccc-CcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHH
Q 044122 128 VALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETR-ALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGA 206 (492)
Q Consensus 128 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~-~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~ 206 (492)
++++++.. .+...+.+.++|.+...+...+++.+..++++ ++|++..++++.+.++|.++|+.+++++.++.||++.
T Consensus 96 ~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~ 173 (475)
T TIGR00924 96 LAMSIYPD--LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVG 173 (475)
T ss_pred HHhcccHh--HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 88877533 34456777888888887888889988886533 4688899999999999999999999999999999999
Q ss_pred HHHHhHhHHHHHHhhheeeec----cCCCcc-chhhhhHHHHH------------HHH----------------------
Q 044122 207 LGILAIPPTLLIVLGFVIYET----RATSHH-FEKKKAIESVI------------FTM---------------------- 247 (492)
Q Consensus 207 f~i~~~~~~~~~~~~~~~~e~----~~~~~~-~~~~~~~~~~~------------~~~---------------------- 247 (492)
|.+.++..++..+.+++.++. ++++.+ ++++++..... ..+
T Consensus 174 f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (475)
T TIGR00924 174 FNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIF 253 (475)
T ss_pred HHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 998876544443333333321 111110 00000000000 000
Q ss_pred --HHHHH-----hcccc--cchhhHHHHhhhhhhcccccccceeeeccCCC-C-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044122 248 --KGMCK-----SIKLP--QVWKPSLYMFLSFAVSISTHEGQFYWATDPKA-G-PAFSQEFVGVIYALGAVASIIGVLIY 316 (492)
Q Consensus 248 --~~~~~-----~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~~~g~~~~~~~~~~~~~~~~~ 316 (492)
+...+ .-|+| .+....+...+....+....+....+..+..+ . .+++ ...+++.++..+..++..++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~-ip~~~~~~~n~~~iil~~p~~ 332 (475)
T TIGR00924 254 FFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMS-VPVIWFQSLNPFWVVVGSPVL 332 (475)
T ss_pred HHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceE-ECHHHHHhhhHHHHHHHHHHH
Confidence 00000 00111 11111122222222222222322233222211 0 1111 124556666666666665554
Q ss_pred H----HHHcc-CCCchhh--HHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 044122 317 H----KTLKD-YPYRNLL--FFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCP 389 (492)
Q Consensus 317 ~----~l~~r-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (492)
. ++.|| .+.+... .++.++..++... ..+.......-...+.+..+....+.++...+..+...++..+.+|
T Consensus 333 ~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~-~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP 411 (475)
T TIGR00924 333 AMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLT-FAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAP 411 (475)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 4 45554 2333333 3444444433222 1111110000001122233334456666666667777888999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 390 RGIEGTFFALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 390 ~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
++.||+++|++.....+|..+++.+.....+.
T Consensus 412 ~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~ 443 (475)
T TIGR00924 412 QRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP 443 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999988888888888777766543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=187.13 Aligned_cols=372 Identities=12% Similarity=0.070 Sum_probs=252.6
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+.-++........+.+.+++++|+|+.|.+++.++-.+...+ ..+.|.+.||++ + |++..++.++..+-++..+
T Consensus 23 f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfG----g-R~~~~~s~~l~~IP~~~~~ 97 (417)
T COG2223 23 FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFG----G-RKWTILSMLLLLIPCLGLA 97 (417)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccC----c-hHHHHHHHHHHHHHHHHHH
Confidence 444454555555566677788999999999999998876555 999999999972 4 5566677777777777777
Q ss_pred hcCCch-HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC---hHH
Q 044122 130 LLGKLP-IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG---HQG 205 (492)
Q Consensus 130 ~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g---w~~ 205 (492)
++.+.+ .+.+++..++.|++.+... .....++.+.|+ +++|.++++.. ..|+|..+...++..+....| ||.
T Consensus 98 ~a~~~~~~~~ll~~gll~G~~GasFa-v~m~~~s~~fP~--~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~ 173 (417)
T COG2223 98 FAVTYPSTWQLLVIGLLLGLAGASFA-VGMPNASFFFPK--EKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRN 173 (417)
T ss_pred HHccCCchHHHHHHHHHHhcccceeh-cccccccccCCh--hhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHH
Confidence 765443 2345555666666655433 355666777744 56899999998 899999999999998888888 998
Q ss_pred HHHHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHH-HHHHHhcccccchhhHHHHhhhhhhcccccccceee
Q 044122 206 ALGILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTM-KGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYW 283 (492)
Q Consensus 206 ~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (492)
...+..+..++. ++.++...+.+..+... + +.. .+++.+.++|+.|...+.-+.....+.+++..+..|
T Consensus 174 ~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~--~-------~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~ 244 (417)
T COG2223 174 VAGIYVVALAIAAVLAWLGMNDVPEHRASV--K-------PQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMY 244 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhccc--c-------ccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877776665 55666666555432211 1 111 456777889999988776655554445555444444
Q ss_pred eccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhh
Q 044122 284 ATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 363 (492)
Q Consensus 284 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (492)
..+. +|.++.+.|.+.....+...+..++.|+++||+|.+|.+......++++......... ..-.-......+
T Consensus 245 ~~~~---fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~---~~~~~~~~~~~~ 318 (417)
T COG2223 245 LVTQ---FGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT---GFGHGGSFVVFV 318 (417)
T ss_pred HHHh---cCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc---ccccCcchHHHH
Confidence 4444 8999999999888888999999999999999999999988877766654332211111 000001122222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHH
Q 044122 364 TEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLR 443 (492)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 443 (492)
........+.+........++..+.| ++.|.+.|+...+..+|+..-|..-|...+..|. +.. .+.+...+.
T Consensus 319 ~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~----~~~---~f~~~~~~~ 390 (417)
T COG2223 319 AVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS----YTG---AFMLLLAFY 390 (417)
T ss_pred HHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc----HHH---HHHHHHHHH
Confidence 22333444556666666666666666 5789999999999999999999999999998772 122 344444444
Q ss_pred HHHHHHHhhcC
Q 044122 444 FATLGLIFLVP 454 (492)
Q Consensus 444 ~~~~~~~~~~~ 454 (492)
+++.+..+...
T Consensus 391 ~~a~v~~~~~y 401 (417)
T COG2223 391 LVALVLTWALY 401 (417)
T ss_pred HHHHHHHHHHH
Confidence 55555554333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=194.05 Aligned_cols=280 Identities=15% Similarity=0.123 Sum_probs=205.1
Q ss_pred HHHHhccCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCC
Q 044122 31 QMLSSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYH 109 (492)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~ 109 (492)
++.+++..+.++..++..| +....+..-++-+...-+++|.+....+.+.+.+++.+++++ +++.|.+.||++
T Consensus 36 ~~l~~K~dl~i~~~~~~~y-~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~----- 109 (495)
T KOG2533|consen 36 RKLLRKLDLFILPFLCYLY-FHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP----- 109 (495)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC-----
Confidence 4456666777777777777 544444322222222224466899999999999999999998 999999999984
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHH
Q 044122 110 RRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLI 189 (492)
Q Consensus 110 Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~l 189 (492)
-.+.+....+++.+..++.....|.+ .+++.|++.|+..+...|....++..+.+ +++|+..+++++...++|.++
T Consensus 110 ls~~l~~~~~~w~~~~~~~~~~~s~~--~~ialr~llGl~es~~wP~~~~~lg~wy~--~~e~g~r~~~~~a~~~~g~i~ 185 (495)
T KOG2533|consen 110 LSKGLSVSGILWGLFGFLTAAVHSFP--GLIALRFLLGLFESGGWPGVVAILGNWYG--KSERGLRMGIWYASASLGNIF 185 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHhcccchHHHHHHHhhcC--hhhhhhhHHHHHHhcchhhHH
Confidence 34456666666666655555556544 46778999999999999999999998884 467999999999999999999
Q ss_pred HHHhHhHhh------hcCChHHHHHHHhHhHHHH-HHhhheeeeccCCCc--cchhhh-hHHHH----------HHHHHH
Q 044122 190 GYSSSGFFV------HHLGHQGALGILAIPPTLL-IVLGFVIYETRATSH--HFEKKK-AIESV----------IFTMKG 249 (492)
Q Consensus 190 g~~l~~~l~------~~~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~--~~~~~~-~~~~~----------~~~~~~ 249 (492)
|.++...+. ...|||+.|++.+++.++. ++..+++|+.|.+.. +++++. ..++. +....+
T Consensus 186 ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 265 (495)
T KOG2533|consen 186 GGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKG 265 (495)
T ss_pred HHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHH
Confidence 999987753 3579999999999999887 667788998776321 111100 00000 023467
Q ss_pred HHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 044122 250 MCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDY 323 (492)
Q Consensus 250 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 323 (492)
+++.+++|.+|...+..++......+.....+++... +.|+++.+...+.....++.+++.++++.+.||.
T Consensus 266 ~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~---~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 266 FKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKS---NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred HHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHc---CCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence 8899999999998887777665444444444444433 2679999999999999999999999999999994
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-21 Score=175.81 Aligned_cols=373 Identities=15% Similarity=0.108 Sum_probs=249.3
Q ss_pred hhhhhHhhHHhhhhcCc---Ch----HHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 58 SFFKVVTDYYWKDVQKV---QP----STVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 58 ~~~~~~~~~~~~~~~g~---s~----~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
......+|+|+++..+. ++ +-++...++..+-.++ .|+.|.++|+. | .||+++-....+..++++++.
T Consensus 32 ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~---g-~Rk~~~~~f~~i~i~~~~~L~ 107 (438)
T COG2270 32 IVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP---G-PRKKFFGFFTAIGIISTFLLW 107 (438)
T ss_pred eeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC---C-CcchHHHHHHHHHHHHHHHHH
Confidence 34445678887775433 33 3456666666665444 99999999996 3 788999999999999999999
Q ss_pred hcCC-chHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhH--hHh-h-------
Q 044122 130 LLGK-LPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSS--GFF-V------- 198 (492)
Q Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~--~~l-~------- 198 (492)
+.++ ..++..++...+..++.....+..+++.++..++++ -++..++-+....+|..+.-.+. +.+ .
T Consensus 108 ~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~--~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~ 185 (438)
T COG2270 108 FIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN--MGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITI 185 (438)
T ss_pred HhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc--cCcccccccccccccchHHHHHHHHHHhcccccceeE
Confidence 9887 445556666778888888899999999999986644 34455544455556655544332 111 1
Q ss_pred --------hcCChHHHHHHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhh
Q 044122 199 --------HHLGHQGALGILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLS 269 (492)
Q Consensus 199 --------~~~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 269 (492)
+...-|..+.+.++..++. +..++..|+.++...+ ..+.....+++...++++..+++.+.+.++.-+++
T Consensus 186 ~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~-~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~ 264 (438)
T COG2270 186 ILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSP-PPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFY 264 (438)
T ss_pred EeeccCccccccchhHHHHHHHHHHHHHhHHHhccccccccccc-chHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2234578888888888777 4556666665533211 11222344555566677777788877776665554
Q ss_pred hhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHh
Q 044122 270 FAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILR 349 (492)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (492)
+-...+....-..|... .+|++..+...+.....+.+++|++++|++.+|++.|++++.+.++..+.++.. .+..
T Consensus 265 ~DGv~til~~~~~fg~~---~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~-~~~~- 339 (438)
T COG2270 265 IDGVNTILAMGGVFGAA---DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYL-IFLE- 339 (438)
T ss_pred HhhHHHHHHHHHHHHHH---HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHH-HHcc-
Confidence 43211111111122222 279999999999999999999999999999999999999988877666543321 1111
Q ss_pred hhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCc
Q 044122 350 WNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDY 429 (492)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~ 429 (492)
.+ .-.+....+.+...+-......++..+.+|++++++.+|+++.....++.+||++.+.+.+..|..+.
T Consensus 340 ------~~--~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~-- 409 (438)
T COG2270 340 ------GE--LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRA-- 409 (438)
T ss_pred ------cc--HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhh--
Confidence 11 11222233444455555666778899999999999999999999999999999999999998874321
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044122 430 RNLWLVILIRNVLRFATLGLIFLVPKGN 457 (492)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (492)
.+....++..++++.+..+|..+
T Consensus 410 -----g~~~i~vll~iGl~~L~~v~~~~ 432 (438)
T COG2270 410 -----GVLSIIVLLLIGLLLLLRVKVPG 432 (438)
T ss_pred -----HHHHHHHHHHhhHhhEEeecCCC
Confidence 23333444556666666666553
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-20 Score=186.17 Aligned_cols=369 Identities=15% Similarity=0.133 Sum_probs=233.8
Q ss_pred HHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHh
Q 044122 77 STVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADV 155 (492)
Q Consensus 77 ~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 155 (492)
++.+++.++..++..+ ++++|+++|++ +||+.++++.++..++.++++++++.. .++++|++.|+|.+....
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~-----GRk~~l~~~~~~~~iG~ii~~~a~~~~--~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRI-----GRKKTLLLAVVLFLIGAIIIALAPSWY--QLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHhccchhhhhh
Confidence 4568999999998777 99999999996 799999999999999999999999654 578899999999999999
Q ss_pred hhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhc-CChHHHHHHHhHhHHHHHHhhheeeeccCCCccc
Q 044122 156 VIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHH-LGHQGALGILAIPPTLLIVLGFVIYETRATSHHF 234 (492)
Q Consensus 156 ~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~-~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~ 234 (492)
..+.++.|.++ ++.||...+..+....+|..++..++....+. .+||..+.+..+++++..+..+++||+|+.-.+.
T Consensus 162 ~~piy~sEiap--~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~ 239 (513)
T KOG0254|consen 162 LAPVYISEIAP--AHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEK 239 (513)
T ss_pred cchhhHhhcCC--hhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHc
Confidence 99999999984 46799999999999999999996555444332 5899999999888888866688899988643221
Q ss_pred hhh----------------hhHH---HHH-HHHHH--------HHHhcccccchhhHHHHh-hhhhhcccccccceeeec
Q 044122 235 EKK----------------KAIE---SVI-FTMKG--------MCKSIKLPQVWKPSLYMF-LSFAVSISTHEGQFYWAT 285 (492)
Q Consensus 235 ~~~----------------~~~~---~~~-~~~~~--------~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 285 (492)
.+. +... ..+ +...+ .++-+.+|..++..+... +..+..........||..
T Consensus 240 g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~ 319 (513)
T KOG0254|consen 240 GRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYST 319 (513)
T ss_pred CChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehH
Confidence 000 0000 000 00000 011122244444333222 222212222234445554
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhc--CCCCcchhh
Q 044122 286 DPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLAL--GIPDSFFVI 363 (492)
Q Consensus 286 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 363 (492)
...+..|.+... .....+.++..+++..+...+.||.|||+.++.+...+.+..+............. .....+..+
T Consensus 320 ~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (513)
T KOG0254|consen 320 TIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAI 398 (513)
T ss_pred HHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHH
Confidence 444445555332 33334566666777777789999999999999988777765443222211111100 011122333
Q ss_pred hhhHHHHHHHHHHHHHHHH-HHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHH
Q 044122 364 TEQCVSHIVSRLRWIPMIV-LSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVL 442 (492)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 442 (492)
+...+..........|... +.+|..|.+.|++..++...+..+...+-......+.+..+ .. ...+...+++
T Consensus 399 ~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~-----~~--~~f~~f~~~~ 471 (513)
T KOG0254|consen 399 VFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG-----IG--GTFGYFGGIC 471 (513)
T ss_pred HHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cc--chHHHHHHHH
Confidence 3333333344444444443 56999999999999999888888776665555555555433 01 1122233333
Q ss_pred HHHHH-HHHhhcCCCCccccc
Q 044122 443 RFATL-GLIFLVPKGNHSNEL 462 (492)
Q Consensus 443 ~~~~~-~~~~~~~~~~~~~~~ 462 (492)
.+... .....+||+|.+..+
T Consensus 472 ~~~~~~fv~~~~pETkg~sle 492 (513)
T KOG0254|consen 472 LLSLIIFVFFFVPETKGLTLE 492 (513)
T ss_pred HHHHHHHheEEcccCCCCcHH
Confidence 33333 345689999988753
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=181.83 Aligned_cols=159 Identities=9% Similarity=0.099 Sum_probs=123.2
Q ss_pred ccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhh-hhhhhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhc
Q 044122 53 QGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLP-WVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALL 131 (492)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~-~~~~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~ 131 (492)
..+........++.|+++++|++.++.+++.+.+... +...+++|+++||+ ++||+.++.+.++..++.++++++
T Consensus 33 ~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~----~G~r~~~~~g~~~~~ig~~l~~~~ 108 (500)
T PRK09584 33 ERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKV----LGTKRVIMLGAIVLAIGYALVAWS 108 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555678888888999999998888776654 33467899999993 267888888988888888888876
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHh
Q 044122 132 GKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILA 211 (492)
Q Consensus 132 ~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~ 211 (492)
++.. ..+...+.+.++|.+...+...+++.+..++++++|.+..++++.+.++|..+||.+++++.++.|||+.|.+.+
T Consensus 109 ~~~~-~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 109 GHDA-GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred cccH-HHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 5422 234456677888888877777888899886554556677888899999999999999999999999999999877
Q ss_pred HhHHH
Q 044122 212 IPPTL 216 (492)
Q Consensus 212 ~~~~~ 216 (492)
+..++
T Consensus 188 i~~~i 192 (500)
T PRK09584 188 VGMLI 192 (500)
T ss_pred HHHHH
Confidence 54444
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-20 Score=174.35 Aligned_cols=350 Identities=11% Similarity=0.037 Sum_probs=224.2
Q ss_pred CcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHH-HHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHH
Q 044122 38 HSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPST-VQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFV 115 (492)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~ 115 (492)
.|+....+.+.|+|+.-+.... ..+.|.+ .+++|+|.+| .|.+.++++.+|++ +.+.|+++||+ |-|+++.
T Consensus 24 ~W~~~~~~lC~fGF~~e~R~n~-s~a~p~L-~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-----G~K~vL~ 96 (511)
T TIGR00806 24 SWRVLVLYLCFYGFMAQFRPGE-SFITPYL-LTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-----RYKPVLV 96 (511)
T ss_pred chhHHHHHHHHHHHHHHhhchH-HHHHHHH-HHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHH
Confidence 3666677777888888887543 4555554 4569999999 99999999999988 99999999997 6788999
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHh
Q 044122 116 IAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSG 195 (492)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~ 195 (492)
++.+.+++.+++++++++. ..+.+.+++.|++.+... +...++..+.+ +++|+++.++.+.+..+|.++++++++
T Consensus 97 l~~l~Wsl~t~L~~fa~Sl--~~L~i~R~llGvaEA~~~-A~~syI~~WfP--~kER~ratsi~~sg~~vG~~Ia~~L~q 171 (511)
T TIGR00806 97 LQALSFVCVWLLLLLGTSV--WHMQLMEVFYSVTMAARI-AYSSYIFSLVP--PSRYQRAAAYSRAAVLLGVFLSSVLGQ 171 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753 446778999999999888 88888888884 467999999999999999999999999
Q ss_pred HhhhcCChHHHHHHHhH---hHHHHHHhhheeeeccCC-----Cc--------c-----chhh--hh-------HHHHHH
Q 044122 196 FFVHHLGHQGALGILAI---PPTLLIVLGFVIYETRAT-----SH--------H-----FEKK--KA-------IESVIF 245 (492)
Q Consensus 196 ~l~~~~gw~~~f~i~~~---~~~~~~~~~~~~~e~~~~-----~~--------~-----~~~~--~~-------~~~~~~ 245 (492)
+ ...+|||+-+.+.-+ ...+..+..+++|.+++. .. + +++. .. ...++.
T Consensus 172 l-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (511)
T TIGR00806 172 L-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVR 250 (511)
T ss_pred H-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHH
Confidence 9 557899976554422 222224555677743321 00 0 0000 00 011234
Q ss_pred HHHHHHHhcccccchhhHHHHhhhhhhccccc-ccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 044122 246 TMKGMCKSIKLPQVWKPSLYMFLSFAVSISTH-EGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYP 324 (492)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~ 324 (492)
.+.++++..+||.++...+.-.+..+.+.... -....|...... .+..-|.+-++..+.+.+.++..|++-.+..
T Consensus 251 l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~----~~~yNG~veA~~tllga~~a~~ag~~~~~w~ 326 (511)
T TIGR00806 251 MLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDES----LNKYNGAVDAASTLLGAITSFIAGFVNIRWA 326 (511)
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCC----ccccCCHHHHHHHHHHHHHHHHHHhhcCCch
Confidence 45667778888887766655444433322211 112223211110 1113455556666667777888888755443
Q ss_pred CchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 044122 325 YRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCID 404 (492)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 404 (492)
+-..+.++.....-++++ +.+.. ..+.+..++..++....+.+.......-+++....+.-|..+|+.+++.
T Consensus 327 ~~~~l~l~v~s~~~~gll-~~m~~-------t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvA 398 (511)
T TIGR00806 327 RWSKLLIAVVSAIQAGLV-FWMSQ-------SHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVA 398 (511)
T ss_pred hhHHHHHHHHHHHHHHHh-hhhhc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHH
Confidence 222233332222222221 11111 1234445555556666666655555666677777777788888877766
Q ss_pred HHHHHHHH
Q 044122 405 ILGSLISK 412 (492)
Q Consensus 405 ~lg~~i~~ 412 (492)
-+-+.+-+
T Consensus 399 l~LQtilT 406 (511)
T TIGR00806 399 TALKTIIT 406 (511)
T ss_pred HHHHHheE
Confidence 55554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=166.37 Aligned_cols=342 Identities=12% Similarity=0.108 Sum_probs=239.8
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
|+.|+......+.+|. +++.++++..|++.+...++-++.+ ..+.|++.+|+ ++|.-+++|..+.++++.++.
T Consensus 23 fl~G~~~~l~diLip~-l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-----gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 23 FLWGFITCLNDILIPH-LKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-----GYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred HHHHHHhhcchhhHHH-HHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHh
Confidence 4445554444445554 5566999999999999999999988 88999999996 678889999999999988876
Q ss_pred hcCCc-hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhc--------
Q 044122 130 LLGKL-PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHH-------- 200 (492)
Q Consensus 130 ~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~-------- 200 (492)
-+.+. .+..+++..++.+.|.+...+..+.++..+.+++ ...+-+++.+....+|.+++|++++.+..+
T Consensus 97 pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~--~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~ 174 (422)
T COG0738 97 PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE--SAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSA 174 (422)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch--hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCH
Confidence 44332 3445667778899999999999999999988543 334447777789999999999999987762
Q ss_pred -----------CChHHHHHHHhHhHHHHHHhhhee--eeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHh
Q 044122 201 -----------LGHQGALGILAIPPTLLIVLGFVI--YETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMF 267 (492)
Q Consensus 201 -----------~gw~~~f~i~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 267 (492)
..|+++|.+.+...+++.+..... |+.+...++..+. ++ ....+.+++|.++...+..|
T Consensus 175 ~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~------~~--~~~~~l~~~~~~~~gvl~~F 246 (422)
T COG0738 175 AQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGAS------GS--AGLSSLFQNKHLRLGVLAIF 246 (422)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccc------cc--chHHHHHhChHHHHHHHHHH
Confidence 247888888777766664444333 3333222221001 00 14567788999998888888
Q ss_pred hhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHH
Q 044122 268 LSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFI 347 (492)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (492)
++-.........+..|..+. .|+++.+.+...+....+.++|.++..++.+|+...|.+....++.....+. ..+.
T Consensus 247 lYVG~Eva~gsfl~~y~~~~---~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~-~~l~ 322 (422)
T COG0738 247 LYVGAEVAIGSFLVSYLEEL---LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLA-VALI 322 (422)
T ss_pred HHHhHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH-HHHh
Confidence 87765555544444444443 6889999999999999999999999999999999999887765444432111 1111
Q ss_pred HhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 348 LRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
++ ...+....+.++..+..++...++..+..|++ ....|....+..+|+++-|.+-|++.|+.|.
T Consensus 323 ---------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~--ts~~s~~l~maivGGAiiP~l~G~i~d~~g~ 387 (422)
T COG0738 323 ---------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEH--TSVGSGLLVMAIVGGAIIPPLQGVIADMFGI 387 (422)
T ss_pred ---------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcc--ccccceeeeeheecchHHHHHHHHHHHhhhh
Confidence 11 11222222444455666666677777888833 2334445667788999999999999999874
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=169.30 Aligned_cols=328 Identities=15% Similarity=0.163 Sum_probs=203.4
Q ss_pred CcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 044122 73 KVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMA 151 (492)
Q Consensus 73 g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 151 (492)
+.+..-.|.+.+.+.+...+ +|.||.+|||+ |||+++..|++..+++..+.+.+.++ ..++..|++.|+..+
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-----GRkpvll~c~~~va~s~ll~~~S~~F--~afv~aR~l~Gi~kg 136 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRY-----GRKPVLLACLIGVALSYLLWALSRNF--AAFVLARFLGGIFKG 136 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-----CchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhccC
Confidence 34555678888889888777 99999999995 89999999999999999999988876 335555999888777
Q ss_pred HHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhh---cCChHHHHH----HHhHhHHH-HHHhhhe
Q 044122 152 IADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVH---HLGHQGALG----ILAIPPTL-LIVLGFV 223 (492)
Q Consensus 152 ~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~---~~gw~~~f~----i~~~~~~~-~~~~~~~ 223 (492)
...+ ..+++.|..++ ++|+..++......++|.++||.+||++.. ..|- .+|. +..+.... .....++
T Consensus 137 nl~v-~rAiisdV~se--k~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~-~p~alP~~~v~i~a~~~v~~~~~~ 212 (451)
T KOG2615|consen 137 NLSV-IRAIISDVVSE--KYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGS-YPFALPCLLVFILAAGDVTFFPWF 212 (451)
T ss_pred chHH-HHHHHHhhcCh--hhccceeeeeehhhhcchhhcchhhhHHHhhHhhhcc-CchHHHHHHHHHHHHHHHHHHHHh
Confidence 6554 67888999855 668999999999999999999999999877 2221 1122 22222222 2345678
Q ss_pred eeeccCCCccchhhh---h----HHHH-HHHHHHHHHhcccccchhhH-------HHHhhhhhhcccccccceeeeccCC
Q 044122 224 IYETRATSHHFEKKK---A----IESV-IFTMKGMCKSIKLPQVWKPS-------LYMFLSFAVSISTHEGQFYWATDPK 288 (492)
Q Consensus 224 ~~e~~~~~~~~~~~~---~----~~~~-~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (492)
+||+-+.+++.+++. + .++. +-....-...+||++....+ +-.+++...+..+......+. .
T Consensus 213 lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~---~ 289 (451)
T KOG2615|consen 213 LPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLT---H 289 (451)
T ss_pred CCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhh---c
Confidence 888754333221110 0 0000 00111123345565433211 111111111111111111111 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhh
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYP--YRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQ 366 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (492)
.++|+++.+.|.+.+..++.+.+......+..+|.. .+-.+..+..++. .++.+.. .......+....
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v----P~~llls------~~~~~~~l~~~s 359 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV----PAFLLLS------LARTPVVLYLGS 359 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH----HHHHHHh------ccccchhhhHHH
Confidence 448999999998877666665555444444445443 1222222211111 1111111 111222334445
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 367 CVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
.+..+.........+.++....|+++||++.|+..+...++.++||.++|.+..|.--
T Consensus 360 ~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~ 417 (451)
T KOG2615|consen 360 TLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQG 417 (451)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecC
Confidence 5666666666666778889999999999999999999999999999999999887543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-19 Score=174.28 Aligned_cols=335 Identities=16% Similarity=0.115 Sum_probs=197.9
Q ss_pred hHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 044122 62 VVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALAL 140 (492)
Q Consensus 62 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (492)
..++.+.+ ++|-+ ....|+.+...++... .|+.|++||.+ +||.+++.+.++..++.+.++.+++... ++
T Consensus 65 ~~l~~I~~-diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-----GRr~~~i~g~~l~vvG~Iv~atA~~~~~--~i 135 (599)
T PF06609_consen 65 SILPYINA-DIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-----GRRYFFIIGSLLGVVGSIVCATAQNMNT--FI 135 (599)
T ss_pred HHHHHHHH-hcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-----cchHHHHHHHHHHHhHHHHhhcCCcHHH--HH
Confidence 34454444 48854 6777888888887766 99999999996 7999999999999999999999987653 66
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHH-
Q 044122 141 TCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIV- 219 (492)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~- 219 (492)
....+.++|.+.... ....++|..+. +.|.....+......+....++.++..+..+.+|||.|++..+...+.++
T Consensus 136 ag~~l~GvgaG~~~~-~~~~isEl~p~--k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 136 AGMVLYGVGAGVQEL-AALAISELVPN--KWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred HHHHHHHHhhHHHHH-HHHHHHHhccc--chhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 777888888777654 34557888743 44555454444333343445566666566677999999998887666533
Q ss_pred h-hheeeeccCCCccc--hhhhhHHHHH--------------------------------------------------HH
Q 044122 220 L-GFVIYETRATSHHF--EKKKAIESVI--------------------------------------------------FT 246 (492)
Q Consensus 220 ~-~~~~~e~~~~~~~~--~~~~~~~~~~--------------------------------------------------~~ 246 (492)
. .++.|.+++..+.+ .+++...++. |.
T Consensus 213 ~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~ 292 (599)
T PF06609_consen 213 IFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEW 292 (599)
T ss_pred HHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhh
Confidence 2 23333222111110 0011000000 00
Q ss_pred HH---H---HHHhccccc-chhhHHHHhhhhhhcccccccceeeeccCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHH
Q 044122 247 MK---G---MCKSIKLPQ-VWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQ---EFVGVIYALGAVASIIGVLIY 316 (492)
Q Consensus 247 ~~---~---~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~g~~~~~~~~~~~~~~~~~ 316 (492)
.. + -++++|+++ +...++..++..+.++.. ..+|.......++-|. ...++......++..++..+.
T Consensus 293 ~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~---~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~ 369 (599)
T PF06609_consen 293 FGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSV---NILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVIL 369 (599)
T ss_pred hccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHH
Confidence 00 0 024455533 222233333333222211 1122211110022222 245677777888888888888
Q ss_pred HHHHccCCCch-hhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 044122 317 HKTLKDYPYRN-LLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGT 395 (492)
Q Consensus 317 ~~l~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 395 (492)
+.+.++.++-| .++++.+++.+. +. .+.. ....+....++...+.++..+....+.....+-.+|++..|+
T Consensus 370 g~l~~~ir~~Kw~li~~~~~~ta~-~G--ama~-----~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~ 441 (599)
T PF06609_consen 370 GLLFSKIRHIKWQLIFGSVLMTAF-CG--AMAA-----VRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGT 441 (599)
T ss_pred HHHHHHccchhHHHHHHHHHHHHH-HH--HHHH-----ccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHH
Confidence 88887765444 444444333321 11 1111 111222233444556666667766677777777899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 396 FFALLMCIDILGSLISKWGGGIVL 419 (492)
Q Consensus 396 ~~g~~~~~~~lg~~i~~~l~g~l~ 419 (492)
+.|+..+++.+|+++|..+..-+.
T Consensus 442 a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 442 ATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999998876654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-21 Score=179.80 Aligned_cols=401 Identities=9% Similarity=0.029 Sum_probs=240.4
Q ss_pred cchhhhhHHHhhhcccccchhhhhHhhHHhhhhcC-------cChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCc
Q 044122 39 SSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQK-------VQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHR 110 (492)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~R 110 (492)
.+.+.+..+.+ |.++++...++...+.+-....+ .++...+.+..+..++.++ |.++|++.||+ +|
T Consensus 40 fk~i~iAG~Gf-ftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-----GR 113 (538)
T KOG0252|consen 40 FKAIIIAGMGF-FTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-----GR 113 (538)
T ss_pred HHHHHHhhhhh-cccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cc
Confidence 34455555566 88898887777666654333222 3445567777777888888 99999999996 79
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHH
Q 044122 111 RPYFVIAGVLGLVSALIVALLGKL-----PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGA 185 (492)
Q Consensus 111 k~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~ 185 (492)
|+++...+++..+++++++++... -+..+...|++.|+|.+.-+|.+.+..+|.+.+ ++||...+........
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~--~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANK--KTRGAFIAAVFAMQGF 191 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhh--ccccceeEEEEEecch
Confidence 999999999999998877765322 145577889999999999999888888888854 5677777666555666
Q ss_pred HHHHHHHhHhHhhh----cC-----------ChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhh----------hhH
Q 044122 186 GSLIGYSSSGFFVH----HL-----------GHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKK----------KAI 240 (492)
Q Consensus 186 G~~lg~~l~~~l~~----~~-----------gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~----------~~~ 240 (492)
|.+.|.+++-.+.. .+ =||..|.+.+++++++....+..||+++-.....++ ...
T Consensus 192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~ 271 (538)
T KOG0252|consen 192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLS 271 (538)
T ss_pred hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccc
Confidence 66665555544321 11 299999998888888888888899987644110000 000
Q ss_pred H-------------HHHHHHHHHHHhcccc---cchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHH--------
Q 044122 241 E-------------SVIFTMKGMCKSIKLP---QVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQE-------- 296 (492)
Q Consensus 241 ~-------------~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------- 296 (492)
. ..++......+.+..+ ........-|+.-..++... .+.....+..|+.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~n----L~~s~I~~~ig~~~~~~~~~~~~ 347 (538)
T KOG0252|consen 272 VDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQN----LFQSVIFSAIGVIPSANTYHELF 347 (538)
T ss_pred cccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc----cHHHHHHHhhccCCCcchHHHHH
Confidence 0 0000000011111111 11111111111111111111 111111111122111
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHH
Q 044122 297 FVGVIYA-LGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRL 375 (492)
Q Consensus 297 ~~g~~~~-~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (492)
....... +...+.+.|.++...+.|++|+++..+.+++++.+..+ .+...++....... .++...+..++..
T Consensus 348 ~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~---~~~~~y~~~~~~~G---f~v~y~l~~ff~N- 420 (538)
T KOG0252|consen 348 KVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFF---VIAGPYNQLENTIG---FVVLYSLTFFFGN- 420 (538)
T ss_pred HHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHH---HHcCCcccccccCc---eeehHHHHHHHHh-
Confidence 1222222 33444555777777889999999999999887776433 22222221111111 1112222222222
Q ss_pred HHHHHH---HHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhh
Q 044122 376 RWIPMI---VLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFL 452 (492)
Q Consensus 376 ~~~~~~---~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (492)
+.|.. .+.+|.+|.+.||+..|+......+|+.++....+.+.++- + +.......++.+.+.+.+++.+..++
T Consensus 421 -FGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~-y--p~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 421 -FGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN-Y--PPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred -cCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc-C--CccccchHHHHHHHHHHHHhHheeEE
Confidence 22322 24489999999999999999999999999999999988843 1 11122334777778888889888899
Q ss_pred cCCCCccccc
Q 044122 453 VPKGNHSNEL 462 (492)
Q Consensus 453 ~~~~~~~~~~ 462 (492)
+||+++++.+
T Consensus 497 ~pEtk~~~le 506 (538)
T KOG0252|consen 497 IPETKGKSLE 506 (538)
T ss_pred eecccccCHH
Confidence 9999988753
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=192.89 Aligned_cols=361 Identities=12% Similarity=0.039 Sum_probs=245.3
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+.+.+..++.+..++.+-++ ++++.++.|++.+.+.+++++ .++.|++.||. +||+++.++.++.+++.++++
T Consensus 43 ~~~~~~~g~~~~~l~~iek~-F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-----~r~~~i~~g~ll~~lg~ll~a 116 (633)
T TIGR00805 43 LQGLLYNGLVNSSLTTIERR-FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-----HRPIVIGIGCAIMGLGSFLLS 116 (633)
T ss_pred HHHHHHHHHHHhhchhhhhh-hCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-----CcceEEEecHHHHHHHHHHHh
Confidence 66666667777777766554 999999999999999999887 99999999995 788899999999999988887
Q ss_pred hcC-------------------------------------------------CchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 044122 130 LLG-------------------------------------------------KLPIALALTCLIGITGGMAIADVVIDAC 160 (492)
Q Consensus 130 ~~~-------------------------------------------------~~~~~~~~~~~~l~~~g~~~~~~~~~a~ 160 (492)
+.+ +..+..+++.++++|+|.+...+...++
T Consensus 117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~ 196 (633)
T TIGR00805 117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISY 196 (633)
T ss_pred ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchh
Confidence 652 1123446678999999999998999999
Q ss_pred hhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcC----------------------ChHHHHHHHhHhHHHHH
Q 044122 161 IARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHL----------------------GHQGALGILAIPPTLLI 218 (492)
Q Consensus 161 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~----------------------gw~~~f~i~~~~~~~~~ 218 (492)
+.|..+ +++|++..++++.+..+|.++|+++++++.+.+ +|+..|++.+++.++..
T Consensus 197 i~d~~~--~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~ 274 (633)
T TIGR00805 197 IDDFAK--SKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS 274 (633)
T ss_pred hhccCC--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999984 467999999999999999999999999887542 27777888888777765
Q ss_pred HhhheeeeccCCCcc-c----hhhh--------hH----HHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccce
Q 044122 219 VLGFVIYETRATSHH-F----EKKK--------AI----ESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQF 281 (492)
Q Consensus 219 ~~~~~~~e~~~~~~~-~----~~~~--------~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (492)
+.++++|++.++... . ++++ .. ...++..+..+++++||.++...+..++.......+....+
T Consensus 275 v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP 354 (633)
T TIGR00805 275 IPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLP 354 (633)
T ss_pred HHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566654322110 0 0000 00 01123335577899999988777666555544433333333
Q ss_pred eeeccCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCC--chhhHHHHHHHHHhhhhHH--HHH---------
Q 044122 282 YWATDPKAGPAFSQEFVGVIYALGAV-ASIIGVLIYHKTLKDYPY--RNLLFFAQLLYGISGMLDL--IFI--------- 347 (492)
Q Consensus 282 ~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~--~~~--------- 347 (492)
.|.... +|+++.+.+++.....+ +.+++.++.|++.||++. |+....+.+...+..+... ++.
T Consensus 355 ~yl~~~---~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ag 431 (633)
T TIGR00805 355 KYLENQ---YGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAG 431 (633)
T ss_pred HHHHHH---cCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccce
Confidence 344333 79999999998876655 678999999999999874 4555544443333222211 110
Q ss_pred --------------H-hhh------h------------------hcC------------------------------C--
Q 044122 348 --------------L-RWN------L------------------ALG------------------------------I-- 356 (492)
Q Consensus 348 --------------~-~~~------~------------------~~~------------------------------~-- 356 (492)
. .-| . ..| .
T Consensus 432 v~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~ 511 (633)
T TIGR00805 432 VNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCN 511 (633)
T ss_pred eeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCC
Confidence 0 000 0 000 0
Q ss_pred -CC-c-ch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 044122 357 -PD-S-FF-VITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDI-LGSLISKWGGGIVLHLL 422 (492)
Q Consensus 357 -~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-lg~~i~~~l~g~l~~~~ 422 (492)
.. . .. .++...+..+.......|.+..+.+.+|+++|..+.|+...+.. +|..=+|.+.|++.|..
T Consensus 512 ~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~s 582 (633)
T TIGR00805 512 PPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVS 582 (633)
T ss_pred cccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhch
Confidence 00 0 00 11111222233334445666666789999999999999988776 78899999999999964
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=150.13 Aligned_cols=322 Identities=16% Similarity=0.147 Sum_probs=225.3
Q ss_pred HhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 044122 67 YWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIG 145 (492)
Q Consensus 67 ~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 145 (492)
.+++++|+|.+++|.++++-.+.+.+ .|+..+++.|+ +-++.+..+.++..++.++-...+ ...++..-.+
T Consensus 37 ~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-----g~er~l~~~Llli~~G~~iR~~~~---~~~L~~gt~l 108 (395)
T COG2807 37 EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-----GEERSLFLALLLIAAGILIRSLGG---LPLLFLGTLL 108 (395)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----hhHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHH
Confidence 45667999999999999999988876 99999999997 445567777777777766655442 2345666778
Q ss_pred HHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcC-ChHHHHHHHhHhHHHHHHhhhee
Q 044122 146 ITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHL-GHQGALGILAIPPTLLIVLGFVI 224 (492)
Q Consensus 146 ~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~-gw~~~f~i~~~~~~~~~~~~~~~ 224 (492)
.+.|.+...+..++++.+..+ ++-+.+++++....++|..+++.+.-.+..+. |||....+-++++++..+.|+--
T Consensus 109 ~G~gIav~nVLLPslIK~~Fp---k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 109 AGAGIAVINVLLPSLIKRDFP---KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred HHhhHHHHHHhhhHHHHhhcc---cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999888888888877654 45688999999999999999999998888877 79999998888888877766533
Q ss_pred eeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHH
Q 044122 225 YETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYAL 304 (492)
Q Consensus 225 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 304 (492)
..+++..... . ...+..+++|+|.-|...+++-+.+..++.....++ ....+.|+|+.+.|.+.+.
T Consensus 186 ~~r~~~~~~~--~--------~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP----~ili~~G~sa~~aG~llsl 251 (395)
T COG2807 186 ALREQAASIA--T--------KLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLP----AILIDRGLSAAEAGSLLSL 251 (395)
T ss_pred cccccccccc--c--------ccccccccccCchhHHHHHHHHhhHHHHHHHHHHHH----HHHHHcCCCHHHhhhHHHH
Confidence 2111111110 0 001224578899999999888887776554433333 3334479999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q 044122 305 GAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLS 384 (492)
Q Consensus 305 ~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (492)
..+..+..++..+.+.+|...++.+.+...++...+++.+.+.+.... +.. ..+.+...+..+.....++
T Consensus 252 ~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~--------~lw--~~llG~G~G~~F~laL~li 321 (395)
T COG2807 252 MQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLP--------ILW--ALLLGLGQGGAFPLALTLI 321 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHH--------HHH--HHHHhCccchHHHHHHHHH
Confidence 999999999999999987654444443333333333333333221111 111 1233333344444444444
Q ss_pred -HhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 385 -TRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 385 -~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
.+...+++.+...|+.+.+.++-..+||.+.|++.|..|
T Consensus 322 ~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 322 LLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred HhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 444556788888999999999999999999999999876
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-17 Score=161.12 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=116.6
Q ss_pred hhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchH
Q 044122 58 SFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPI 136 (492)
Q Consensus 58 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~ 136 (492)
..+...+|.|+++++|.+..+.+.+.+.+.....+ .++.|+++||+ .+||+.++++.++..++.++++..++...
T Consensus 26 Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRi----lGrrr~iliG~il~~lg~lll~~~~~~~~ 101 (493)
T PRK15462 26 YGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKV----LGNRMAVMLGALLMAIGHVVLGASEIHPS 101 (493)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 34455678888887999999999999888876555 78999999995 26788888888888888776665332111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHH
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTL 216 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~ 216 (492)
. ......+..+|.+...+...+++.|..++++++|.+..++.+.+.++|..++|.+.+++.+..|||+.|.+.++..++
T Consensus 102 ~-~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 102 F-LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred H-HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence 1 222233444566655566678889988765557888999999999999999999999999999999999987654333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-17 Score=164.09 Aligned_cols=357 Identities=15% Similarity=0.144 Sum_probs=231.0
Q ss_pred hhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 044122 70 DVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITG 148 (492)
Q Consensus 70 ~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (492)
+....+.....+..+++.++.++ ..++|+++||+ |||+.++++.++..++.++.++++|+. .+++.|++.|+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-----GRk~~~~~~~~~~~i~~~~~a~a~~~~--~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-----GRKPVLLVSLLLFIIFGILTAFAPNYW--MFLIFRFLSGF 183 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-----ccHHHHHHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHh
Confidence 44677888888899999999998 66899999995 799999999999999999999999765 46788999999
Q ss_pred HHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHHhhheeeecc
Q 044122 149 GMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYETR 228 (492)
Q Consensus 149 g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~ 228 (492)
+.+........++.|+. .+++|+.+.++ ......+..+++..++++.. +||+.+++..++.++.++.+++.+|++
T Consensus 184 ~~~~~~~~~~~~~~E~~--~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~ 258 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIV--SPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESP 258 (521)
T ss_pred hccchhHHhHhhheeec--CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence 99998888999999998 45679999998 67777888888888888877 899999999999888766677777887
Q ss_pred CCCccchhhhh------------------HHHHHHH--HH-----------HHHHhcccccchhhHHHHhhhhhhccccc
Q 044122 229 ATSHHFEKKKA------------------IESVIFT--MK-----------GMCKSIKLPQVWKPSLYMFLSFAVSISTH 277 (492)
Q Consensus 229 ~~~~~~~~~~~------------------~~~~~~~--~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (492)
+......+.++ ....... .+ .....++.|+++...+...+.....
T Consensus 259 rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~---- 334 (521)
T KOG0255|consen 259 RWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF---- 334 (521)
T ss_pred HHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHH----
Confidence 64322110000 0000000 00 1223334443333333333322111
Q ss_pred ccceeeecc-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 044122 278 EGQFYWATD-PKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGI 356 (492)
Q Consensus 278 ~~~~~~~~~-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (492)
...|+... ...++|.+... .....+.....+....+...++.|||.....+..+..++.+........
T Consensus 335 -~~~y~gl~~~~~~lg~~~~~---~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~------- 403 (521)
T KOG0255|consen 335 -SLVYYGLSLNVSGLGGNIYL---NFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD------- 403 (521)
T ss_pred -hHHHHhhhhhhhhcCchHHH---HHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc-------
Confidence 11122111 11123333322 2233333666677777888999998888887766655543322211110
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHH
Q 044122 357 PDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVI 436 (492)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~ 436 (492)
...........+..+..+.++.......+|..|+..|+.+.+..+....++..++|.+.-....... ......
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~-------~~~~~~ 476 (521)
T KOG0255|consen 404 LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFP-------LLGLIL 476 (521)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------cchHHH
Confidence 0001222223344444455555666777999999999999999999999999999988765544211 111111
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccc
Q 044122 437 LIRNVLRFATLGLIFLVPKGNHSNE 461 (492)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (492)
......+.+.+...++||++....
T Consensus 477 -~~~~~~l~~~~~~~~lpet~~~~l 500 (521)
T KOG0255|consen 477 -FGWLALLLGLLSLLLLPETKGKPL 500 (521)
T ss_pred -HHHHHHHHHHHHHhcCcccCCCCC
Confidence 233344444555578999887654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-23 Score=205.54 Aligned_cols=364 Identities=17% Similarity=0.188 Sum_probs=224.7
Q ss_pred HHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHH
Q 044122 77 STVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLG---KLPIALALTCLIGITGGMAI 152 (492)
Q Consensus 77 ~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~g~~~ 152 (492)
.+.++..+...++..+ .++.|.++||+ |||+.++.+.++..++.++.++++ +.. .+.+.|++.|++.+.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-----GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~R~~~G~~~g~ 118 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-----GRKPALIISALLMIIGSILIAFAPSYNNFW--MLLIGRFLIGFGIGG 118 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-----cccccccccccccccccccccccccccccc--ccccccccccccccc
Confidence 4578888888998888 89999999996 788999999999999999999998 544 466789999999999
Q ss_pred HHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhc---CChHHHHHHHhHhHHHHHHhhheeeeccC
Q 044122 153 ADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHH---LGHQGALGILAIPPTLLIVLGFVIYETRA 229 (492)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~---~gw~~~f~i~~~~~~~~~~~~~~~~e~~~ 229 (492)
..+....++.|.. +++.|++..++.+.+..+|.+++..++..+... .+||..+.+.+++.++..+..+++||+|+
T Consensus 119 ~~~~~~~~~~E~~--~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~ 196 (451)
T PF00083_consen 119 AYVVSPIYISEIA--PPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPR 196 (451)
T ss_pred ccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8889999999998 446789999988888888988888776544333 45999999988888777777788999876
Q ss_pred CCccchhhh--------------hHHHHHHH---H-------HHHHHhcccccchhh-HHHHhhhhhhcccccccceeee
Q 044122 230 TSHHFEKKK--------------AIESVIFT---M-------KGMCKSIKLPQVWKP-SLYMFLSFAVSISTHEGQFYWA 284 (492)
Q Consensus 230 ~~~~~~~~~--------------~~~~~~~~---~-------~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 284 (492)
.-..+++.+ .+++.++. . ...++.++++..++. .....+.............+|.
T Consensus 197 wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 276 (451)
T PF00083_consen 197 WLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYS 276 (451)
T ss_pred eecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence 422111000 00000000 0 112334444332222 2111121111111112233444
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHH-hhhhhcCCCCcchhh
Q 044122 285 TDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFIL-RWNLALGIPDSFFVI 363 (492)
Q Consensus 285 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 363 (492)
....+..+.+.. -.......+..+++.++...+.||+|||+.+..+.....+..+....... ..+.. .... ...+
T Consensus 277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~i 352 (451)
T PF00083_consen 277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSS-SWWS-ILSI 352 (451)
T ss_pred cccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc-cccc
Confidence 444344555555 12223444556667777779999999999988876665554332210000 00000 0001 1111
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHH
Q 044122 364 TEQCVSHIVSRLRWIPMI-VLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVL 442 (492)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 442 (492)
....+..........+.. .+..|.+|.+.|+++.|+.....+++..+++.+...+.+..+.. ..+.+.+.+
T Consensus 353 ~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~--------~~~~i~~~~ 424 (451)
T PF00083_consen 353 VFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGW--------GVFLIFAGV 424 (451)
T ss_pred eeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------ccchhhHHH
Confidence 111111112222222333 56699999999999999999999999999998888877765411 122233333
Q ss_pred HHHHH-HHHhhcCCCCcccc
Q 044122 443 RFATL-GLIFLVPKGNHSNE 461 (492)
Q Consensus 443 ~~~~~-~~~~~~~~~~~~~~ 461 (492)
.++.. +...++||+|++..
T Consensus 425 ~~i~~i~~~~~lpET~g~~l 444 (451)
T PF00083_consen 425 CLIAIIFVYFFLPETKGKTL 444 (451)
T ss_pred HHHHHhheeEEEeeCCCCCH
Confidence 33333 34458999998765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-15 Score=152.66 Aligned_cols=154 Identities=13% Similarity=0.024 Sum_probs=115.8
Q ss_pred hHHhhhhcCcChHHHHHHHHHhhhhhhhhhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCC----chHHHHH
Q 044122 65 DYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGK----LPIALAL 140 (492)
Q Consensus 65 ~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~ 140 (492)
.+.+++++|+|.++++++.++.......+++.|+++||+ +||+++.++.+++.++.++++++.+ .+.+.+.
T Consensus 50 s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~-----G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~ 124 (591)
T PTZ00207 50 SGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYL-----GPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS 124 (591)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 334566799999999998876433223477899999996 7899999999999999999988621 1344456
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHH-HHHhHhHhhhcCChHHHHHHHhHhHHHH-H
Q 044122 141 TCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLI-GYSSSGFFVHHLGHQGALGILAIPPTLL-I 218 (492)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~l-g~~l~~~l~~~~gw~~~f~i~~~~~~~~-~ 218 (492)
+.+++.++|.+...+.....+.++.+ ++||++.++...+..+|.++ +++..+++. .+|+..|++.++++++. +
T Consensus 125 l~r~l~G~G~~~~~~~~~~~i~~~Fp---~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 125 VYNGLMTLGCMLFDLGAVVTVLSVFP---SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHH
Confidence 67888899988888777777777764 46899999999999999986 444444443 36888898888888776 4
Q ss_pred Hhhheeeecc
Q 044122 219 VLGFVIYETR 228 (492)
Q Consensus 219 ~~~~~~~e~~ 228 (492)
+.+.++++++
T Consensus 200 l~~~~vr~p~ 209 (591)
T PTZ00207 200 LAIVFMRLPP 209 (591)
T ss_pred HHHhheeCCc
Confidence 4555565543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-16 Score=139.07 Aligned_cols=354 Identities=12% Similarity=0.079 Sum_probs=210.3
Q ss_pred ccCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHH
Q 044122 36 QLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYF 114 (492)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l 114 (492)
+++|...+...+.. +.+.. .......+.+.+.+..|.+..|..++......++.+ .-.||..+|++ +||+..
T Consensus 74 rfq~yl~~~ag~gw-mad~m-~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-----grr~~f 146 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGW-MADAM-EMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-----GRRKGF 146 (528)
T ss_pred cchhhHHHHhhhHH-HHHHH-HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-----hcchhh
Confidence 35555554444443 33332 234444455566666888899999999999999988 88999999997 566666
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhH
Q 044122 115 VIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSS 194 (492)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~ 194 (492)
.+..+...+...+.+.+||+.+ +.+++.+.++|.+. .+...++..|..+. .+|...+-.. ..+.+|.+....+.
T Consensus 147 ~~T~l~t~v~~~is~~spnf~~--L~~f~~l~~~g~gg-~pv~~~~yle~lp~--~~r~~~~V~~-~~waig~v~ea~la 220 (528)
T KOG0253|consen 147 NLTFLVTGVFGVISGASPNFAS--LCVFRALWGFGVGG-LPVDSAIYLEFLPS--SHRWLLTVMS-FFWAIGQVFEALLA 220 (528)
T ss_pred hhhHHHHHHHHHhhcCCCCeeh--hhHHHHHHhccCCC-ccHhHHHHHHhccC--cCCCcchhHH-HHHHHHHHHHHHHH
Confidence 6777777777788888998775 44556666777665 44455666666644 3355554444 88899999999999
Q ss_pred hHhhhcCChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhh-----------------------------hhHH---H
Q 044122 195 GFFVHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKK-----------------------------KAIE---S 242 (492)
Q Consensus 195 ~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~-----------------------------~~~~---~ 242 (492)
-..+.++||||.....+++..+..+.++++||+++-...+.++ +.++ .
T Consensus 221 w~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~ 300 (528)
T KOG0253|consen 221 WGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESD 300 (528)
T ss_pred HHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhc
Confidence 8888999999998888877777788889999988632111000 0000 0
Q ss_pred HH--------HHHHHHHHhcccccchhhHHH---Hhhhhh-hccc----------ccccce---eeeccCCCC----CCC
Q 044122 243 VI--------FTMKGMCKSIKLPQVWKPSLY---MFLSFA-VSIS----------THEGQF---YWATDPKAG----PAF 293 (492)
Q Consensus 243 ~~--------~~~~~~~~~l~~~~~~~~~~~---~~~~~~-~~~~----------~~~~~~---~~~~~~~~~----~g~ 293 (492)
.. +.-.++..++ .|.+++..+. .++.+. .+++ ....-. .......+. ...
T Consensus 301 ~~~~~~~a~ke~rg~~~nLl-sp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s 379 (528)
T KOG0253|consen 301 LDDSKSSAAKEVRGGTTNLL-SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLS 379 (528)
T ss_pred hhhhhhccccccccchHhhc-ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCcc
Confidence 00 0000112222 1222221111 111111 0000 000000 000000000 011
Q ss_pred CHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHH
Q 044122 294 SQEFVGVIY-ALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIV 372 (492)
Q Consensus 294 ~~~~~g~~~-~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (492)
++. -+.. .+..+..+.|.++.+.+.||+|||+.+....+++++..+. +... --++....+ .+..-++
T Consensus 380 ~~~--dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfl---l~~c-----~~rn~~tvl--lf~araf 447 (528)
T KOG0253|consen 380 VAK--DYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFL---LTTC-----KTRNAYTVL--LFTARAF 447 (528)
T ss_pred chh--HHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHH---HHHh-----cCcchhHHH--HHHHHHH
Confidence 111 1221 3566778899999999999999999998887766654322 1110 011111111 1122223
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 044122 373 SRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGG 415 (492)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~ 415 (492)
....+...+.+..|..|...|+++.|...++..+|+.+.|.+.
T Consensus 448 isg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 448 ISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred HhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 2333444455668999999999999999999999999999988
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-15 Score=139.52 Aligned_cols=266 Identities=14% Similarity=0.106 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhc---------------
Q 044122 136 IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHH--------------- 200 (492)
Q Consensus 136 ~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~--------------- 200 (492)
...+++..++.+.|.+...+..+.++++..++ +++.+.+++.+....+|.+++|.+++.+...
T Consensus 10 ~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~--~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 10 YVLFLGALFVLASGLTILQVAANPYVSILGPI--ETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCc--chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 34567778899999999999999999999744 4577889999999999999999999987731
Q ss_pred -CChHHHHHHHhHhHHHHHHhhhee--eeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhccccc
Q 044122 201 -LGHQGALGILAIPPTLLIVLGFVI--YETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTH 277 (492)
Q Consensus 201 -~gw~~~f~i~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (492)
.+|+++|++.+.+.++..+.+.+. ||.++++.+. ...+ +. .+.++.+++|.++...+..+++.....+..
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~--~~~~----~~-~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~ 160 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVAR--VSSG----DT-TQKTSAFQFTHLVLGALGIFVYVGAEVSAG 160 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccc--cccc----cc-cchhhHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 479999997766655554443333 4432221111 0000 00 112345667777766666666554443333
Q ss_pred ccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 044122 278 EGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIP 357 (492)
Q Consensus 278 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (492)
+....|..+. +.+|+++.+.+...+....+.++|.++.+++.||++.|+.+.++..+..+..+ .... .+
T Consensus 161 ~w~~~yl~~~-~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~---l~~~-------~~ 229 (310)
T TIGR01272 161 SFLVNFLSDP-HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI---GAAL-------TH 229 (310)
T ss_pred HHHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH---HHHH-------cC
Confidence 3333343321 22689999999999999999999999999999999999887766554443321 1111 01
Q ss_pred CcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 358 DSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
.....+ ...+.+++.+..++...+...+..|+ +.+++.++. .+..+|..+.|.+.|.+.|..|.
T Consensus 230 ~~~~~~-~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~ 293 (310)
T TIGR01272 230 GYVAMW-FVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGI 293 (310)
T ss_pred CHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccc
Confidence 111111 11234444455566666667777764 456677774 66779999999999999998764
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-14 Score=135.46 Aligned_cols=149 Identities=16% Similarity=0.131 Sum_probs=118.5
Q ss_pred cCcChHHHHHHHHHhh-hhhhhhhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 044122 72 QKVQPSTVQIYIGLYY-LPWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGM 150 (492)
Q Consensus 72 ~g~s~~~~g~~~s~~~-l~~~~~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 150 (492)
+|.+.+++.-+.+.|. +.|....++|+++||+ .|+|+.+..|.++..++.++++.+.......+.+...+..+|.
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~----LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~ 131 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRV----LGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGT 131 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcc
Confidence 4588888877777765 4677678899999998 3677788899999999999988875112223455566667999
Q ss_pred HHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHHhhhee
Q 044122 151 AIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVI 224 (492)
Q Consensus 151 ~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~ 224 (492)
+..-+....++.|..++++.+|-..+++++++.++|.+++|.+.+++.+.+||+..|.+.++-....++.++..
T Consensus 132 Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 132 GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred ccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99888888999998886555588889999999999999999999999999999999999887666655444433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-16 Score=138.12 Aligned_cols=361 Identities=14% Similarity=0.111 Sum_probs=212.5
Q ss_pred HhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHh---cCCchHHH
Q 044122 63 VTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVAL---LGKLPIAL 138 (492)
Q Consensus 63 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~---~~~~~~~~ 138 (492)
++..+.+.+.+++.++..++.+++.+|..+ ..+.|++.||. +| -|-..++.+.++ .++-++++. ++ ..+.
T Consensus 65 alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~--fg-ir~gtii~~~fv-~~GqliFa~Ggi~~--aFw~ 138 (459)
T KOG4686|consen 65 ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRR--FG-IRLGTIILCIFV-FLGQLIFAAGGISH--AFWT 138 (459)
T ss_pred hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhh--hh-hhHHHHHHHHHH-HHHHHHHHhchHHH--HHHH
Confidence 444555656888889999999999999877 77899999995 33 222333433333 233333332 23 3455
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCCh------HHHH---H-
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGH------QGAL---G- 208 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw------~~~f---~- 208 (492)
....|++.|+|.-...++.+.+...+.. .+|-+.++++.....-+|..+-..+.+++++..+- +... .
T Consensus 139 M~~GRF~FGIGgESlAVaQN~yav~wFK--GKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~ 216 (459)
T KOG4686|consen 139 MLAGRFLFGIGGESLAVAQNKYAVYWFK--GKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLC 216 (459)
T ss_pred HHhhheeeccCchhhhhhhcceeEEEec--CccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHH
Confidence 6788999999887777777777777763 35678888887777788888777777777664321 0010 0
Q ss_pred H---HhHhHHHHHHhhheeeeccCCCc-cchhh--hhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhccccccccee
Q 044122 209 I---LAIPPTLLIVLGFVIYETRATSH-HFEKK--KAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFY 282 (492)
Q Consensus 209 i---~~~~~~~~~~~~~~~~e~~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (492)
+ .+...++.... .-.-+++.++. +.++. .+.++. .+.+ . -.|.+|...+..+++.....-+.+.-..
T Consensus 217 ~~~~tc~~slical~-lg~~D~rAerilh~e~g~~Ge~pkL----tdv~-~-f~ppfw~~~iicv~yyva~fPFi~lg~~ 289 (459)
T KOG4686|consen 217 FEVKTCKQSLICALS-LGLSDDRAERILHLEEGFLGEEPKL----TDVN-T-FYPPFWVLVIICVLYYVAWFPFITLGPM 289 (459)
T ss_pred HHHHHHHHHHHHHHH-hhhhhhHHHHHHhhhcCcccCCccc----cccc-c-cCccHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 1 11111111111 11111111100 00000 000000 1111 1 1367777766555544322211111112
Q ss_pred eeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchh
Q 044122 283 WATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFV 362 (492)
Q Consensus 283 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (492)
+.++. +|+|+...+-+.+.....+.+.+++.|.+.||.|++...+.+..+..+.+-..+.+. .++.+ .
T Consensus 290 fF~~r---fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft-~lsPy-------~- 357 (459)
T KOG4686|consen 290 FFQKR---FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT-FLSPY-------T- 357 (459)
T ss_pred HHHHh---hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh-hccHH-------H-
Confidence 22233 899999999998888888888899999999999988777666544443322222111 11111 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHH
Q 044122 363 ITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVL 442 (492)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 442 (492)
...+.+..+.+..-..+..++..+|+++-|+++|..+++.|+|-++.|.+.|.+.|+-| .|..+-..++++..+
T Consensus 358 --~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g----~y~~le~ffl~~~~~ 431 (459)
T KOG4686|consen 358 --SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG----SYDNLEAFFLIIGLM 431 (459)
T ss_pred --HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC----chhhHHHHHHHHHHH
Confidence 11233333333333345567888999999999999999999999999999999998654 355555566666666
Q ss_pred HHHHHHHHhhcCCC
Q 044122 443 RFATLGLIFLVPKG 456 (492)
Q Consensus 443 ~~~~~~~~~~~~~~ 456 (492)
+++....++.++++
T Consensus 432 aL~svgil~~~N~k 445 (459)
T KOG4686|consen 432 ALTSVGILFYLNKK 445 (459)
T ss_pred HHHHHHHHhheecc
Confidence 66666666666543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-13 Score=133.27 Aligned_cols=310 Identities=17% Similarity=0.168 Sum_probs=194.9
Q ss_pred hhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 044122 88 LPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSI 166 (492)
Q Consensus 88 l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~ 166 (492)
+...+ .|+.|.++||+ +||..+.+....+.+..+...+.. + + +++ ..-..-+.+.......++++|...
T Consensus 73 ~~~~i~s~~iG~lSD~~-----grk~~L~~~~~~~~l~~~~~~~~~--~-~-~~~-~~~l~g~~~~~~s~~~a~vadis~ 142 (463)
T KOG2816|consen 73 LLTLISSPLIGALSDRY-----GRKVVLLLPLFGTILPALCLLFQG--Y-W-FFL-LLGLSGGFSAIFSVGFAYVADISS 142 (463)
T ss_pred HHHHHHHhhhHHhhhhh-----hhhhhHHHHHHHHHHhHHHHHHHH--H-H-Hhh-hcccccchhhhhhhhhhheeeccc
Confidence 33344 99999999995 789888888877777766655544 2 1 111 111112223334456677788774
Q ss_pred cccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH-HHhhheeeeccCCCccch--------hh
Q 044122 167 ETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL-IVLGFVIYETRATSHHFE--------KK 237 (492)
Q Consensus 167 ~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~--------~~ 237 (492)
+ ++|....++.+.....+..++|.+++.+....|.-.+|.+.++..++. ....+++||+..++.+++ .+
T Consensus 143 ~--~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~ 220 (463)
T KOG2816|consen 143 E--EERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGS 220 (463)
T ss_pred h--hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCc
Confidence 4 578999999999999999999999999999999999999998888877 456678888765554431 00
Q ss_pred hhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcc-cccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044122 238 KAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSI-STHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIY 316 (492)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 316 (492)
.......+..+...+.-++|..+......++...... ......++|.... +++++.+.+.+.+.......++..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~---f~w~~~~~s~~~~~~~~~~~i~~l~~ 297 (463)
T KOG2816|consen 221 LDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK---FGWNKKEFSDLLSLVSILGIISQLLL 297 (463)
T ss_pred ccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeee---cCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111222333332223444443333333222211 1222334444444 89999999988777766666666555
Q ss_pred H-HHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 044122 317 H-KTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGT 395 (492)
Q Consensus 317 ~-~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 395 (492)
. .+.+.++.++....+.....+..+. ..+. ++.| ..+. ............+...+..+..++++++|+
T Consensus 298 ~~~l~~~l~~~~~i~lGl~~~~~~~~~-~af~--~~~w-------~~~~-~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~ 366 (463)
T KOG2816|consen 298 LPLLSSILGEKRLISLGLLSEFLQLLL-FAFA--TETW-------MMFA-AGVVVALAGIVFPAIRAFASILVSPEEQGK 366 (463)
T ss_pred HHHHHHHHhhhhHhhHHHHHHHHHHHH-HHHh--ccch-------hhhH-HHHHHHhhcchhHHHHhHHHhhcccccccc
Confidence 5 6677778888666665544433221 1111 1111 1111 112223334455556678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 396 FFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 396 ~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
++++...+..+...++|.+-+.++..+-
T Consensus 367 v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 367 VFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999877654
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=130.12 Aligned_cols=365 Identities=15% Similarity=0.133 Sum_probs=215.7
Q ss_pred hhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhhhhHHhhhcccc--ccCCCCchhHHHHHH
Q 044122 41 FIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAF--PIKGYHRRPYFVIAG 118 (492)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~--~~~g~~Rk~~l~~~~ 118 (492)
-+..+.++| ..||+..++.. .+|.+++. -|+|-++.+ +.+..+.|+.++.+|.++.|.. .++| |||.|++-+.
T Consensus 32 ~illLl~LY-llQGiP~GL~~-~iP~lL~a-k~vSyt~~a-~fS~ay~P~sLKllWaPiVDs~y~k~~G-rrksWvvp~q 106 (510)
T KOG3574|consen 32 SILLLLFLY-LLQGIPLGLIG-AIPLLLQA-KGVSYTSQA-IFSFAYWPFSLKLLWAPIVDSVYSKRFG-RRKSWVVPCQ 106 (510)
T ss_pred hHHHHHHHH-HHcCCchhHhh-hhHHHhcC-CCcchhhhh-hhhhhhhHHHHHHHHHhhhHHHHHHhhc-cccceeeehH
Confidence 345577788 99999999988 88988886 799999888 4577888999999999999944 3346 8999998888
Q ss_pred HHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHH
Q 044122 119 VLGLVSALIVALLGKLP---------IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLI 189 (492)
Q Consensus 119 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~l 189 (492)
.+....+..++...+.. ........++.-+..+..+++.++..-.+- +|++-|-+.+ +..+|.-.
T Consensus 107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmL--s~e~lgyaST----~q~Vg~~~ 180 (510)
T KOG3574|consen 107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTML--SRENLGYAST----CQSVGQTA 180 (510)
T ss_pred HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhc--CHhhcCchhH----HHHHHHhh
Confidence 77766666666543221 112333456778899999999999886665 3333444443 44444444
Q ss_pred HHHhHhHhh----h-------cCChH---------HHHHHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHH
Q 044122 190 GYSSSGFFV----H-------HLGHQ---------GALGILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMK 248 (492)
Q Consensus 190 g~~l~~~l~----~-------~~gw~---------~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 248 (492)
|..+++.+. . ..+|. ...+..+...++. .+..++-+|++.. .. ++...+..+..+
T Consensus 181 GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~-~~---~e~~~~i~~~yk 256 (510)
T KOG3574|consen 181 GYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES-VD---EELELGIHESYK 256 (510)
T ss_pred hHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh-hh---hhhhcCHHHHHH
Confidence 444443321 1 11222 2233444444444 3333433333322 11 111234455667
Q ss_pred HHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchh
Q 044122 249 GMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNL 328 (492)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~ 328 (492)
-++++++-|.++....+....-..+.... ..+.. ...+.|++..+.+++..+.....+......|++..+..+-..
T Consensus 257 ~l~~vLklk~v~~la~i~lt~K~gf~a~d-a~t~L---kLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~ 332 (510)
T KOG3574|consen 257 LLRDVLKLKSVRWLAGILLTGKLGFQAAD-ALTSL---KLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNV 332 (510)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHhhhhh-hccch---HHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchH
Confidence 78888888888766655544433332222 22211 112378888888877665566666666666666542211111
Q ss_pred hHHHHHHHHHhhhhHHHHHHhhhhhcCC-----CCcchh--hhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 044122 329 LFFAQLLYGISGMLDLIFILRWNLALGI-----PDSFFV--ITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLM 401 (492)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 401 (492)
..-+.-.=...+.....++..+. .++. +....+ +....+.+......+...++..+++.++...|+.|.+.|
T Consensus 333 ~lka~~~R~~~~~~~t~Lv~~~~-~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLN 411 (510)
T KOG3574|consen 333 FLKAVPYRLGGGLVQTALVWWTP-TLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLN 411 (510)
T ss_pred HHHhhhHHHHHHHHHHHHHhhhc-ccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHH
Confidence 10000000000011111111111 1111 222222 222345554545556666777799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 044122 402 CIDILGSLISKWGGGIVLHLLHVT 425 (492)
Q Consensus 402 ~~~~lg~~i~~~l~g~l~~~~g~~ 425 (492)
+..++|...-..+..++.|.+++.
T Consensus 412 TLsnLGg~wp~tv~l~l~D~ltv~ 435 (510)
T KOG3574|consen 412 TLSNLGGNWPGTVALWLADGLTVK 435 (510)
T ss_pred HHHHhcCCcHHHHHHHhcccCcee
Confidence 999999999999999999987763
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-13 Score=125.50 Aligned_cols=373 Identities=17% Similarity=0.177 Sum_probs=223.4
Q ss_pred hhhHHHhhhcccccchhhhhHhhHHhhh-hcCcChHHHHHHHHHhhhhhhhhhHHhhhcccc--ccCCCCchhHHHHHHH
Q 044122 43 FGIVLVYGLCQGFSGSFFKVVTDYYWKD-VQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAF--PIKGYHRRPYFVIAGV 119 (492)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~--~~~g~~Rk~~l~~~~~ 119 (492)
..+.++| +.||+..++....+|.++++ .-++|-+|.| ++|....|+.++.+|.++.|.+ +++| |||.|++-...
T Consensus 3 ~lL~~LY-~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~-~fSla~~PfSlKlLWaPiVDs~y~~~~G-RRKSWiiP~Q~ 79 (544)
T PF13000_consen 3 ALLVLLY-FLQGIPLGLAFGSIPFLLQSMAKKVSYSQQA-IFSLASYPFSLKLLWAPIVDSVYSKRIG-RRKSWIIPIQY 79 (544)
T ss_pred eHHHHHH-HHcCcccccccccchhhhccccCCCChhHhe-eeeeeechhHHHHhhhhhhhhhcccccC-CcchhhhHHHH
Confidence 3567788 99999988865677888876 2478899998 4577788999999999999998 6778 99999998888
Q ss_pred HHHHHHHHHHhcCC----------------------chHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHH
Q 044122 120 LGLVSALIVALLGK----------------------LPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQS 177 (492)
Q Consensus 120 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~ 177 (492)
+.++..+.++...+ .....+....++.-+-.+..+++.++..-.+.. ++.++-+.+
T Consensus 80 l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls--~~n~~~AST 157 (544)
T PF13000_consen 80 LSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLS--PENVGYAST 157 (544)
T ss_pred HHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcC--hhhcchHHH
Confidence 88877666654331 011112233334556667888888888765542 233444444
Q ss_pred HHHHHHHHHHHHHHHhHhHhhh------c-------CC---hHHHHHHHhHhHHHH-HHhhheeeeccCCCc----c---
Q 044122 178 LCAFCSGAGSLIGYSSSGFFVH------H-------LG---HQGALGILAIPPTLL-IVLGFVIYETRATSH----H--- 233 (492)
Q Consensus 178 ~~~~~~~~G~~lg~~l~~~l~~------~-------~g---w~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~----~--- 233 (492)
.-..+.++|..++..+--.+-+ + .| -..-..+.+...++. +.+.++-+|++..+. +
T Consensus 158 cqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~ 237 (544)
T PF13000_consen 158 CQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPIN 237 (544)
T ss_pred HHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccc
Confidence 3335555565555433322221 0 01 112223344444554 445555566542110 0
Q ss_pred -ch-----------hh-----hhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHH
Q 044122 234 -FE-----------KK-----KAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQE 296 (492)
Q Consensus 234 -~~-----------~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 296 (492)
.+ ++ ++..+.++..+.+++++|-|.+....+..+..-..+.... .....- .-+.|++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~d-a~T~LK---LlEkG~~KE 313 (544)
T PF13000_consen 238 KSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQAND-AVTSLK---LLEKGLSKE 313 (544)
T ss_pred cccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccch-hhhHHH---HHHcCCCHH
Confidence 00 00 0112345666788999999999888776666555333222 222111 123799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCc-----------------hhh----------HHHHHHHHHhhhhHHHHHHh
Q 044122 297 FVGVIYALGAVASIIGVLIYHKTLKDYPYR-----------------NLL----------FFAQLLYGISGMLDLIFILR 349 (492)
Q Consensus 297 ~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-----------------~~~----------~~~~~~~~~~~~~~~~~~~~ 349 (492)
..+.+..+..-..++..++.+|+.+...+. +.+ ..+...-.+..++....+..
T Consensus 314 ~LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~ 393 (544)
T PF13000_consen 314 DLALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYF 393 (544)
T ss_pred HhHHHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEe
Confidence 998887777777888888888876533210 000 00100000000000000000
Q ss_pred hhhhcCCCCcch--hhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 350 WNLALGIPDSFF--VITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 350 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
...--.++..++ +++...+..+.....+.+..+.-+++.+|..-|++|.+.|++.|+|+.--..+.-++.|++..
T Consensus 394 fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~ 470 (544)
T PF13000_consen 394 FPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTV 470 (544)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccc
Confidence 000001122222 233455666666777778888889999999999999999999999999999999999998754
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-12 Score=121.66 Aligned_cols=365 Identities=16% Similarity=0.054 Sum_probs=195.7
Q ss_pred CcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHH
Q 044122 38 HSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVI 116 (492)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~ 116 (492)
||.++.+.. .+.+.+++. ......+..+.++.+| +...+-|..-+|.+.+.. ....-|+.||+ +-|...++
T Consensus 43 RW~vLl~~s-lL~~SN~~q-WI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-----GLR~a~ll 114 (480)
T KOG2563|consen 43 RWVVLLAFS-LLNFSNGMQ-WIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-----GLRTALLL 114 (480)
T ss_pred HhHHHHHHH-HHHhcCcch-heeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-----chHHHHHH
Confidence 444443333 333555442 2222344556667677 555666666667666655 77788999996 56778888
Q ss_pred HHHHHHHHHHHHHhcCCc---hH-H--HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHH
Q 044122 117 AGVLGLVSALIVALLGKL---PI-A--LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIG 190 (492)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~---~~-~--~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg 190 (492)
+..+..++..+-..+... +. . +...+-.+.+.+..+......-...-+. .+.+|..+.++-.++..+|.++|
T Consensus 115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF--~~~qra~A~~~~v~~n~LGvavg 192 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWF--PPDQRAIATVLGVMGNPLGVAVG 192 (480)
T ss_pred HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhC--CcchhhhhhhHHHhcchHHHHHH
Confidence 888888887665554332 11 1 1112222222222222222222223344 44678988888888888999999
Q ss_pred HHhHhHhhhcC------ChHH--HHHHHhHhHHHHH-HhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchh
Q 044122 191 YSSSGFFVHHL------GHQG--ALGILAIPPTLLI-VLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWK 261 (492)
Q Consensus 191 ~~l~~~l~~~~------gw~~--~f~i~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 261 (492)
.++...++.+- +|.. .|+..+.+..+.+ +..+..+++|+.++.....+ .+-.+..+.+++.++|+++..
T Consensus 193 ~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~--~~~~~f~~si~~~~~n~~F~i 270 (480)
T KOG2563|consen 193 FLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAA--LQDASFPKSIKSCFKNRQFII 270 (480)
T ss_pred hhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhh--hhcCcHHHHHHHHHcCccHHH
Confidence 88888776543 4543 3443333333332 23333344333322211011 111123467888999999876
Q ss_pred hHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhh
Q 044122 262 PSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGM 341 (492)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~ 341 (492)
.++...+....+... ++.....+.-.|++....|.+.....++.++++.+.|.+.||.+.-+..............
T Consensus 271 l~~~ygi~~g~F~~l----~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~ 346 (480)
T KOG2563|consen 271 LAICYGIGLGLFNSL----STLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT 346 (480)
T ss_pred HHHHHhhhHHHHHHH----HHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 654333322222211 1222212222456667788888888999999999999999997654443332222222111
Q ss_pred hHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 342 LDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
..+.. .. ......+..+....+.+.+.....+...-+-.|..-|..+|+..|+.+...++-..+-..+-+...+.
T Consensus 347 --~~l~~-~t--~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~ 421 (480)
T KOG2563|consen 347 --LMLLT-CT--LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAED 421 (480)
T ss_pred --HHHHH-hh--ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhc
Confidence 11111 01 11112222222222333222222222223446666678889999999888888877778888877776
Q ss_pred hc
Q 044122 422 LH 423 (492)
Q Consensus 422 ~g 423 (492)
.+
T Consensus 422 ~~ 423 (480)
T KOG2563|consen 422 LG 423 (480)
T ss_pred cC
Confidence 55
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=124.89 Aligned_cols=165 Identities=16% Similarity=0.208 Sum_probs=115.7
Q ss_pred HHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 044122 246 TMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPY 325 (492)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 325 (492)
.+.+..+++.++....+.+...+..+. ..+...+.||.... ++-.+...|.+.+....+.++.-++..++.+|+|.
T Consensus 360 v~a~~~~~~~s~~~llff~~av~mG~g-~~lv~tFLfWHled---~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGH 435 (618)
T KOG3762|consen 360 VLADVGKVFASPHILLFFFVAVVMGAG-VGLVFTFLFWHLED---LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGH 435 (618)
T ss_pred HHHHHHHHhcCCCEEehhHHHHHHHHH-HHHHHHHHHHHHhh---cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcc
Confidence 345556778887766544333332221 11112223554333 56666777777788888999999999999999999
Q ss_pred chhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-
Q 044122 326 RNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCID- 404 (492)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~- 404 (492)
-+++.++..+..+-.+.+-. ..+.|..+-...+.++..+..+....++++..+|++.+.++.|+.....
T Consensus 436 v~v~~lgLa~~~~Rf~~~S~----------L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~ 505 (618)
T KOG3762|consen 436 VNVMYLGLACNVGRFLYYSY----------LQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFH 505 (618)
T ss_pred cceeeehhhHHHHHHHHHHH----------hcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhc
Confidence 99988876665543222111 1233444445567777778888888899999999999999999988766
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 044122 405 ILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 405 ~lg~~i~~~l~g~l~~~~g~ 424 (492)
.+|..+|++++|.+.+.+|.
T Consensus 506 GlG~g~GslIGG~~v~~fg~ 525 (618)
T KOG3762|consen 506 GLGKGLGSLIGGFVVERFGA 525 (618)
T ss_pred ccCcchhhhhhhhhheeehh
Confidence 59999999999999998774
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=130.65 Aligned_cols=371 Identities=15% Similarity=0.136 Sum_probs=200.4
Q ss_pred ccCcchhhhhHHHhhhcccccchhhhhHhhHHhhh-hcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhH
Q 044122 36 QLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKD-VQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPY 113 (492)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~ 113 (492)
+.+||.+....+.- |..+...+......-+|+++ |.+.+.+..|+++++..++.++ .|.+|+.+.|.+ +-|||
T Consensus 30 ~t~wrsi~l~~~~s-fl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~---~~k~P- 104 (488)
T KOG2325|consen 30 KTNWRSIYLALLNS-FLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTG---SVKKP- 104 (488)
T ss_pred CCchHhHHHHHHHH-HHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccC---CcccC-
Confidence 34566555554444 55555555544455566655 4778888999999999999888 999999999962 23566
Q ss_pred HHHHHHHHHHHHHHH-H--hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHH
Q 044122 114 FVIAGVLGLVSALIV-A--LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIG 190 (492)
Q Consensus 114 l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg 190 (492)
++.+.++..++.++. + ..++...++.+++|++.|+|.+... ...+++++.. .+++|.++++....+..+|.++|
T Consensus 105 li~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s--~~~dR~rA~a~~~~~~vlg~ilG 181 (488)
T KOG2325|consen 105 LIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADAS--TVEDRPRAFAATSGGFVLGIILG 181 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhcc--CccchHHHHHHhhhHHHHHHHHh
Confidence 556788888887776 3 2344344567788999999876543 3566666654 33568888888777778888888
Q ss_pred HHhHhHhhhc--CC-----------hHHHHHHHhHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhccc
Q 044122 191 YSSSGFFVHH--LG-----------HQGALGILAIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKL 256 (492)
Q Consensus 191 ~~l~~~l~~~--~g-----------w~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (492)
|.+...+... -| +..+-|+++++.++. +++.++++|..++..+++.+++ ++.+.. .+..++
T Consensus 182 p~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~-~~~~~~----~~~~~~ 256 (488)
T KOG2325|consen 182 PTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV-EEEKSD----IEKVKK 256 (488)
T ss_pred HHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc-hhhccc----hhhhcc
Confidence 8776554321 11 234556666666665 4566778887665543311111 000010 111112
Q ss_pred ccc-----hhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHH-ccCCCc
Q 044122 257 PQV-----WKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEF----VGVIYALGAVASIIGVLIYHKTL-KDYPYR 326 (492)
Q Consensus 257 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~~~~~~~~~~~~~~l~-~r~~~~ 326 (492)
+++ +.+.+..+...+......+....+.... ++.+..+ .|...++.++-++.-.+...... .++..|
T Consensus 257 ~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~---y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r 333 (488)
T KOG2325|consen 257 PKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVM---YGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKR 333 (488)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH---hccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 221 1111111111111111111111111111 3333333 34444444444443333333333 333455
Q ss_pred hhhHHHHHHHHHhhhhHHHHHHhhhh-------hc----C-------------CCCcch-hhhhhHHHHHHHHHHHHHHH
Q 044122 327 NLLFFAQLLYGISGMLDLIFILRWNL-------AL----G-------------IPDSFF-VITEQCVSHIVSRLRWIPMI 381 (492)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~-------------~~~~~~-~~~~~~~~~~~~~~~~~~~~ 381 (492)
+.+..++........ .+...+.. +. + ..+.+. .++...+.+...-+...+..
T Consensus 334 ~~~~~g~l~~f~~~~---i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~ 410 (488)
T KOG2325|consen 334 RIILLGFLIFFLSYY---IFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALD 410 (488)
T ss_pred eeeeehHHHHHHhhh---eeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHH
Confidence 555444222222111 11101100 00 0 000011 11111222222223344566
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044122 382 VLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVT 425 (492)
Q Consensus 382 ~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~ 425 (492)
++.++...++.+++..|++......+..++|.+.-.+....|+.
T Consensus 411 tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~ 454 (488)
T KOG2325|consen 411 TLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPR 454 (488)
T ss_pred HHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCcc
Confidence 78899999999999999999999999999999998888887754
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=119.07 Aligned_cols=162 Identities=15% Similarity=0.183 Sum_probs=120.1
Q ss_pred hhHhhHHhhhhcCcC--------hHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhc
Q 044122 61 KVVTDYYWKDVQKVQ--------PSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALL 131 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s--------~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~ 131 (492)
....+.++++ .|.+ .++.+.+.++..+...+ +++.|+++||+ +||+++..+.++..++..++...
T Consensus 228 ~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-----g~r~~l~~~~~~~~v~~~l~~~~ 301 (418)
T TIGR00889 228 NIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-----GIKKVMLLSLVAWALRFGFFAYG 301 (418)
T ss_pred HHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHc
Confidence 3445666665 5544 36678888887777665 89999999996 78888988888888876666653
Q ss_pred CC-c-hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHH-HHHHHHHHHHHHhHhHhhhc------CC
Q 044122 132 GK-L-PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCA-FCSGAGSLIGYSSSGFFVHH------LG 202 (492)
Q Consensus 132 ~~-~-~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~lg~~l~~~l~~~------~g 202 (492)
.+ . ....+++..++.+++.+...+....++.|..++ ++|++.+++.+ ....+|.++||.++|++.++ +|
T Consensus 302 ~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~--~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~ 379 (418)
T TIGR00889 302 DPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV--HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFD 379 (418)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCc
Confidence 32 1 123344556777888777777777888888743 56899999997 56789999999999999987 56
Q ss_pred hHHHHHHHhHhHHHH-HHhhheeeeccCC
Q 044122 203 HQGALGILAIPPTLL-IVLGFVIYETRAT 230 (492)
Q Consensus 203 w~~~f~i~~~~~~~~-~~~~~~~~e~~~~ 230 (492)
|+..|.+.+++.++. ++..+++||+...
T Consensus 380 ~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 380 WQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 999999888887776 5566667766433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=121.10 Aligned_cols=372 Identities=15% Similarity=0.114 Sum_probs=236.9
Q ss_pred chhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHH
Q 044122 40 SFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAG 118 (492)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~ 118 (492)
+....+.....+.|++..+++...+.. ++++++++.++.|++.+.+-++..+ ..+..+..-|. +|-+++-.|.
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~Itt-iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-----HrPr~Ig~G~ 169 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITT-IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-----HRPRWIGIGL 169 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhh-hhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-----Cccceeeech
Confidence 333333333338888877776666554 4556999999999999999998766 77888888884 7777888899
Q ss_pred HHHHHHHHHHHhcC------------------C-------------------------------c-hHHHHHHHHHHHHH
Q 044122 119 VLGLVSALIVALLG------------------K-------------------------------L-PIALALTCLIGITG 148 (492)
Q Consensus 119 ~~~~~~~~~~~~~~------------------~-------------------------------~-~~~~~~~~~~l~~~ 148 (492)
++.+++.+++++-+ + . .+.+++++.++.|+
T Consensus 170 ~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI 249 (735)
T KOG3626|consen 170 VLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI 249 (735)
T ss_pred hHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc
Confidence 99888888877531 0 0 12244555677788
Q ss_pred HHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcC------------------C-hHHHHHH
Q 044122 149 GMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHL------------------G-HQGALGI 209 (492)
Q Consensus 149 g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~------------------g-w~~~f~i 209 (492)
|.....+...+++-|.+.+ ++-....++.+....+|.++|.++|+++...+ | |..-|++
T Consensus 250 G~Tpi~tlGisYiDDnvk~--~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 250 GATPIFTLGISYIDDNVKK--KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred CCCCCccCCCccccccccc--cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 8777777777787777643 45677889999999999999999999875421 1 4455667
Q ss_pred HhHhHHHHHHhhheeeeccCCCcc---c-------hh-------hhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhh
Q 044122 210 LAIPPTLLIVLGFVIYETRATSHH---F-------EK-------KKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAV 272 (492)
Q Consensus 210 ~~~~~~~~~~~~~~~~e~~~~~~~---~-------~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 272 (492)
.+.+.++..+..+++|.+.++.++ . ++ +...+++++-.+.++++++||.+...++...+....
T Consensus 328 ~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~ 407 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLA 407 (735)
T ss_pred HHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 777777776777777765443221 0 00 001123455566788999999877666555444433
Q ss_pred cccccccceeeeccCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCC--chhhHHHHHHHHHhhhhHHHH--H
Q 044122 273 SISTHEGQFYWATDPKAGPAFSQEFVGVIYA-LGAVASIIGVLIYHKTLKDYPY--RNLLFFAQLLYGISGMLDLIF--I 347 (492)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~-~~~~~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~--~ 347 (492)
..++.+.++=|.. .++|.+++.+..+.. +...+..+|.++.|++.+|+.. |....+..+...+..+.+... .
T Consensus 408 ~~G~~tFlPKyLE---~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~i 484 (735)
T KOG3626|consen 408 ITGYITFLPKYLE---TQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFI 484 (735)
T ss_pred HhhHHHhhHHHHH---HHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEe
Confidence 3333332332322 338999999988874 5555677899999999998753 443333332222222221111 0
Q ss_pred ---------------------Hhh------hh------------------------------hcCC-------------C
Q 044122 348 ---------------------LRW------NL------------------------------ALGI-------------P 357 (492)
Q Consensus 348 ---------------------~~~------~~------------------------------~~~~-------------~ 357 (492)
.+. +. .... +
T Consensus 485 gC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~ 564 (735)
T KOG3626|consen 485 GCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVP 564 (735)
T ss_pred cCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccc
Confidence 000 00 0000 0
Q ss_pred -----C-------------c--chhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHHHHHHHHHH
Q 044122 358 -----D-------------S--FFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDI-LGSLISKWGGG 416 (492)
Q Consensus 358 -----~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-lg~~i~~~l~g 416 (492)
+ . ...+....+..+......+|.+.++.+.+|+++|..++|+..++.+ +|..=+|.+.|
T Consensus 565 ~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG 644 (735)
T KOG3626|consen 565 TNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFG 644 (735)
T ss_pred cccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhh
Confidence 0 0 1112223344444455556666667889999999999999988776 78889999999
Q ss_pred HHHHhh
Q 044122 417 IVLHLL 422 (492)
Q Consensus 417 ~l~~~~ 422 (492)
++.|..
T Consensus 645 ~~ID~t 650 (735)
T KOG3626|consen 645 AVIDTT 650 (735)
T ss_pred hhHhhH
Confidence 999964
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-13 Score=138.07 Aligned_cols=362 Identities=14% Similarity=0.056 Sum_probs=2.6
Q ss_pred hhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHH
Q 044122 50 GLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIV 128 (492)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~ 128 (492)
.+.|+...++....++.+ +.+++++.++.|++.+.+-++..+ ..+..++.+|. +|-+|+..|.++.+++.+++
T Consensus 12 ~~~q~~~~g~~~~~ltti-ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-----hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 12 GLFQMMVSGYVNSSLTTI-ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-----HRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCcceeeecHHHHHHHHHHH
Confidence 366666666666666654 445999999999999999998776 78888998883 77888999999999988877
Q ss_pred HhcC----C--------------------------------------------chHHHHHHHHHHHHHHHHHHHhhhhhh
Q 044122 129 ALLG----K--------------------------------------------LPIALALTCLIGITGGMAIADVVIDAC 160 (492)
Q Consensus 129 ~~~~----~--------------------------------------------~~~~~~~~~~~l~~~g~~~~~~~~~a~ 160 (492)
++-+ . ..+..++++.++.|+|.+...+...++
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 6421 0 002234455577788888888888899
Q ss_pred hhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcC---------------------C-hHHHHHHHhHhHHHHH
Q 044122 161 IARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHL---------------------G-HQGALGILAIPPTLLI 218 (492)
Q Consensus 161 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~---------------------g-w~~~f~i~~~~~~~~~ 218 (492)
+-|.+++ +..+...|+.+....+|.++|..+++.....+ | |-.-|++.+++.++..
T Consensus 166 iDDnv~~--~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a 243 (539)
T PF03137_consen 166 IDDNVSK--KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA 243 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccc--ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 8888743 44677788888899999999999988765311 1 3333445555555555
Q ss_pred HhhheeeeccCCCc------cch----h---hh---hH-------HHHHHHHHHHHHhcccccchhhHHHHhhhhhhccc
Q 044122 219 VLGFVIYETRATSH------HFE----K---KK---AI-------ESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSIS 275 (492)
Q Consensus 219 ~~~~~~~e~~~~~~------~~~----~---~~---~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 275 (492)
+..+++|++.+... +.+ + ++ +. ...++..+.++++++||.+....+...+......+
T Consensus 244 ipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G 323 (539)
T PF03137_consen 244 IPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSG 323 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 55566664332220 000 0 00 00 11233345567888888776655444333332222
Q ss_pred ccccceeeeccCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHccCC--CchhhHHHHHHHHHhhhh--HHHHHHh-
Q 044122 276 THEGQFYWATDPKAGPAFSQEFVGVIYA-LGAVASIIGVLIYHKTLKDYP--YRNLLFFAQLLYGISGML--DLIFILR- 349 (492)
Q Consensus 276 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~-~~~~~~~~~~~~~~~l~~r~~--~~~~~~~~~~~~~~~~~~--~~~~~~~- 349 (492)
+.+..+ .+...+++.++++.+++.. +...+..+|.+++|.+.+|+. .|+......+...+..+. ..++..-
T Consensus 324 ~~tF~p---KylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~ 400 (539)
T PF03137_consen 324 FATFLP---KYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCP 400 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH---HHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCC
Confidence 222222 2222348889988888774 445577788889999998874 344443333322222211 1111100
Q ss_pred ------hh-hh----------------------------cCC---C--C-cchhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 044122 350 ------WN-LA----------------------------LGI---P--D-SFFVITEQCVSHIVSRLRWIPMIVLSTRLC 388 (492)
Q Consensus 350 ------~~-~~----------------------------~~~---~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (492)
.+ .+ -+. . . ....++...+..+......+|......+.+
T Consensus 401 ~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V 480 (539)
T PF03137_consen 401 NPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCV 480 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccC
Confidence 00 00 000 0 0 111222333444455666777777788999
Q ss_pred CCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 044122 389 PRGIEGTFFALLMCIDI-LGSLISKWGGGIVLHLL 422 (492)
Q Consensus 389 ~~~~~g~~~g~~~~~~~-lg~~i~~~l~g~l~~~~ 422 (492)
|+++|+.+.|+...+.. +|..=||.+.|.+.|..
T Consensus 481 ~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 481 PPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -----------------------------------
T ss_pred ChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 99999999999987766 78889999999999863
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-10 Score=114.63 Aligned_cols=166 Identities=14% Similarity=0.140 Sum_probs=107.8
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHH-HHhcCCchH
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALI-VALLGKLPI 136 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~-~~~~~~~~~ 136 (492)
.....+|.++++++|.+..+.++..+...++..+ .++.|+++||+ +||+.+..+.++..++... .....+...
T Consensus 268 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (490)
T PRK10642 268 MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-----GRRPFVILGSVALFVLAIPAFILINSNVI 342 (490)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3445678888777899988888777777777666 88999999996 6777777666543332222 222222122
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcC-ChHHHHHHHhHhHH
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHL-GHQGALGILAIPPT 215 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~-gw~~~f~i~~~~~~ 215 (492)
..++..+++.+++.+........++++..+ ++.|++..++.+....++..++|.+.+++.+.. +|+.++++..++.+
T Consensus 343 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p--~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 420 (490)
T PRK10642 343 GLIFAGLLMLAVILNCFTGVMASTLPAMFP--THIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAV 420 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 233444555555554444455666677764 467999888644445566678888888887754 47777776666666
Q ss_pred HHHHhhheeeeccCCC
Q 044122 216 LLIVLGFVIYETRATS 231 (492)
Q Consensus 216 ~~~~~~~~~~e~~~~~ 231 (492)
+.++..+++||+++..
T Consensus 421 i~~~~~~~~pes~~~~ 436 (490)
T PRK10642 421 IGLITGVTMKETANRP 436 (490)
T ss_pred HHHHHHHHhccccCCC
Confidence 6655666779987653
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=112.98 Aligned_cols=147 Identities=9% Similarity=0.002 Sum_probs=111.3
Q ss_pred HhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 044122 63 VTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALT 141 (492)
Q Consensus 63 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (492)
..+++.++ +|.+..+.+++.+...+...+ +++.|+++||+ +||+.+..+.++..++.+++.+.++......+.
T Consensus 227 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T TIGR00890 227 LYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-----GRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLA 300 (377)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhHHHHHHHHHHHHHHHcccchhHHHHH
Confidence 44556555 899999999888888887766 89999999996 677778888888877777776666433222223
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH
Q 044122 142 CLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL 217 (492)
Q Consensus 142 ~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~ 217 (492)
..++.+++.+...+..++++.|..+ +++|++..++.+....+|..++|.+.|.+.++.||+..|.+.+++.++.
T Consensus 301 ~~~~~g~~~g~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 301 TVALVFFTWGGTISLFPSLVSDIFG--PANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHhccchhccHHHHHHHhh--hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 3444555555444555667777764 3578999999999999999999999999999999999998887766553
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-08 Score=95.91 Aligned_cols=237 Identities=14% Similarity=0.101 Sum_probs=138.6
Q ss_pred ccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHH-hhhe-------eee---ccCCCccch-
Q 044122 168 TRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIV-LGFV-------IYE---TRATSHHFE- 235 (492)
Q Consensus 168 ~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~-~~~~-------~~e---~~~~~~~~~- 235 (492)
++....+.++...-.-.+-.+++|++.|.+.+..|.+....+.+...++... =+++ .|+ +++.+.+++
T Consensus 143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~ 222 (432)
T PF06963_consen 143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESS 222 (432)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccc
Confidence 4456677788777778899999999999999999998887777777766532 1222 221 111111000
Q ss_pred -hh----------hhHHHHHH----HHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHH
Q 044122 236 -KK----------KAIESVIF----TMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGV 300 (492)
Q Consensus 236 -~~----------~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 300 (492)
+. ...++.++ ..++++..+++|.++......+++.. ..+++..+..|... .|+++..+|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~----~G~s~~~igi 297 (432)
T PF06963_consen 223 SDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKS----QGYSPSVIGI 297 (432)
T ss_pred ccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHH----CCCCHHHHHH
Confidence 00 00111111 12233445555655444444444332 23333333333333 5899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhc-CCC-Cc---chhhhhhHHHHHHHHH
Q 044122 301 IYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLAL-GIP-DS---FFVITEQCVSHIVSRL 375 (492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~---~~~~~~~~~~~~~~~~ 375 (492)
+-+...+.++.+.++++++.+|+|..+.-..+.........+... . .+. +.+ .. ...+++..+.-+..-.
T Consensus 298 ~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~--~---~~~~~~~~~~~s~~~l~~gi~~SR~GLW~ 372 (432)
T PF06963_consen 298 FRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVV--S---FWAPGSPFSSISAYLLLGGIALSRIGLWS 372 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH--H---HhcCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888877766555433221111 1 111 111 11 1111111111111122
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 044122 376 RWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWG 414 (492)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l 414 (492)
.......+++|.+|+++||+..|+-++..++...+.-.+
T Consensus 373 fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 373 FDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 234455677999999999999999988888876664433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-10 Score=111.47 Aligned_cols=156 Identities=12% Similarity=0.002 Sum_probs=111.8
Q ss_pred hhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 044122 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALA 139 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (492)
....|.++++++|.+..+.+++.+...+...+ .+++|+++||+ +||+.+..+.+...+....+...++.. ..
T Consensus 236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 308 (393)
T PRK15011 236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-----GKRFLMRVAAVAGVCFYAGMLMAHSPA--IL 308 (393)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHHhhHH--HH
Confidence 34577788888999999999887776665555 88999999996 566666666655555444444444322 23
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHH
Q 044122 140 LTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIV 219 (492)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~ 219 (492)
+..+++.+++.+...........|..+ ++|++.+++++...++|..+++.++|++.+++||+..|++.+++.++..+
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~~~p---~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~ 385 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQDLMP---GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344555555555544444555566653 35889999988889999999999999999999999999988777777666
Q ss_pred hhheeee
Q 044122 220 LGFVIYE 226 (492)
Q Consensus 220 ~~~~~~e 226 (492)
..+++||
T Consensus 386 ~~~~~~~ 392 (393)
T PRK15011 386 CLLRIKD 392 (393)
T ss_pred HHHhhcC
Confidence 6666664
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-11 Score=111.27 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=119.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
++.++|..+.|.+.+...++.-++.++.|.++||.+.|+.+..+.++.++..++.-+. +.......+..+
T Consensus 57 e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs----------~s~~~~~~l~~l 126 (448)
T COG2271 57 EDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS----------PSLFLFAVLWVL 126 (448)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh----------hHHHHHHHHHHH
Confidence 3467999999999999999999999999999999999999988877777654332111 111223344556
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcccccCcchhHHHHHHHHHH-HHH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGG--GIVLHLLHVTRTDYRNLWLVILIRNVL-RFA 445 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~--g~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~ 445 (492)
.+...+...+|+...+.+..|+++||+..++.+++.|+|+.+.+.+. +++.++.+.. . .+.+.+++ .++
T Consensus 127 ng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~-----~---~f~~pgiiaiiv 198 (448)
T COG2271 127 NGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWR-----A---AFYFPGIIAIIV 198 (448)
T ss_pred HHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchh-----H---HHHHHHHHHHHH
Confidence 77777889999999999999999999999999999999999999999 7777665432 2 44444444 355
Q ss_pred HHHHHhhcCCCCcccccCchhhh
Q 044122 446 TLGLIFLVPKGNHSNELIPMDLL 468 (492)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~ 468 (492)
+++.++..+++.++.-..+.|+.
T Consensus 199 al~~~~~~rd~Pqs~GLP~ie~~ 221 (448)
T COG2271 199 ALILLFLLRDRPQSEGLPPIEEY 221 (448)
T ss_pred HHHHHHHhCCCccccCCCCHHHh
Confidence 55555666666555443343433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=95.89 Aligned_cols=131 Identities=24% Similarity=0.277 Sum_probs=101.8
Q ss_pred hhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 044122 87 YLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNS 165 (492)
Q Consensus 87 ~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~ 165 (492)
.++..+ +++.|+++||+ +||+.+..+..+..++.+.+...++.. .....+++.+++.+...+...+++.|..
T Consensus 8 ~~~~~~~~~~~g~~~d~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRF-----GRKPVLLVGLFIFVLSTAMFALSSNIT--VLIIARFLQGFGAAFALVAGAALIADIY 80 (141)
T ss_pred hhHHHHHHhhHHHHHhhc-----chhHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 344444 88999999996 677778888888878777777766543 3445577788888888888888888887
Q ss_pred ccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHH-hhheeee
Q 044122 166 IETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIV-LGFVIYE 226 (492)
Q Consensus 166 ~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~-~~~~~~e 226 (492)
++ ++|++..+..+....+|..+++.+++.+.+..+|++.+++.+++.++..+ ..+..||
T Consensus 81 ~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 81 PP--EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred Ch--hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 44 56899999999999999999999999999999999999988877776643 3344443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-10 Score=113.62 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=99.4
Q ss_pred hhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHH
Q 044122 60 FKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIAL 138 (492)
Q Consensus 60 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (492)
....+|.|+++++|.+..+.++..+...++..+ .+++|+++||+ +||+.++....+..++.....+..+.....
T Consensus 277 ~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (467)
T PRK09556 277 IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-----NGRRALVACIALALIIFTLGVYQHATSEYM 351 (467)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCchHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 445678899888999999999998888887777 99999999997 444444433333222222222221112222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHH-HHHHHHHhHhHhhh------------cCChHH
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGA-GSLIGYSSSGFFVH------------HLGHQG 205 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~l~~~l~~------------~~gw~~ 205 (492)
..+.+++.++..............|..+ ++.|+++.++.+...++ |..++|.+.|++.+ ..||+.
T Consensus 352 ~~~~~~~~G~~~~~~~~~~~~~~~~~~p--~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~ 429 (467)
T PRK09556 352 YLASLFALGFLVFGPQLLIGVAAVGFVP--KKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAG 429 (467)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHH
Confidence 2233333343221111112234456663 36799999999888886 77999999999999 678999
Q ss_pred HHHHHhHhHHHHHHhhh
Q 044122 206 ALGILAIPPTLLIVLGF 222 (492)
Q Consensus 206 ~f~i~~~~~~~~~~~~~ 222 (492)
.|++.++..++..+..+
T Consensus 430 ~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 430 TFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888666666544433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.8e-10 Score=108.26 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=96.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|+++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..+..... .+. ++.+..+....+.
T Consensus 23 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~l~ 92 (399)
T TIGR00893 23 DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ-AFA---------GAYVSLYILRVLL 92 (399)
T ss_pred hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH-HHH---------cCHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999888766555432221 111 1222233333455
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
++..+........++.|..|+++|++.+++.+...++|..+++.+.+.+.+..+
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 146 (399)
T TIGR00893 93 GAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS 146 (399)
T ss_pred HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC
Confidence 555566666777888999999999999999999999999999999999888765
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.2e-10 Score=108.81 Aligned_cols=161 Identities=12% Similarity=0.110 Sum_probs=121.3
Q ss_pred hhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 044122 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALA 139 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (492)
....|.+.++.+|.++.+.|++.+...++..+ .++.|++.||. ++++.+..+.++..++.++..+.++.. ..
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~ 315 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-----RPGLLMLLSTLGSFLAVGLFGLMPMWI--LA 315 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-----CcchHHHHHHHHHHHHHHHHHccchHH--HH
Confidence 34567788877899999999999888887776 88899999983 556667777777777766666666432 23
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH-H
Q 044122 140 LTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL-I 218 (492)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~-~ 218 (492)
.+..++.+++.+...+...+++.+..++ +.|++.+++++....+|..+|+.+.|++.+..|++..+++.+++.++. +
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 393 (417)
T PRK10489 316 VLCLALFGYLSAISSLLQYTLLQTQTPD--EMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGV 393 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 3445566777766666666777777743 568999999999999999999999999999999998888887776665 5
Q ss_pred HhhheeeeccCC
Q 044122 219 VLGFVIYETRAT 230 (492)
Q Consensus 219 ~~~~~~~e~~~~ 230 (492)
+....++|.+..
T Consensus 394 ~~~~~~~~~~~~ 405 (417)
T PRK10489 394 LLLLVLGELRRF 405 (417)
T ss_pred HHHHhccccccc
Confidence 555666665443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-10 Score=110.45 Aligned_cols=155 Identities=11% Similarity=0.040 Sum_probs=111.3
Q ss_pred hhHHhhhh---cCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 044122 64 TDYYWKDV---QKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALA 139 (492)
Q Consensus 64 ~~~~~~~~---~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (492)
.|.++.+. .+.+..+.|++.++..+...+ ++++|+++||+ +||+.+..+.++..++.++.++.++.. ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~l~~~~~~l~~~~~~~~--~~ 318 (420)
T PRK09528 246 FPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-----GAKNALLLAGTIMAVRIIGSGFATGPL--EV 318 (420)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcchhhHHHHHHHHHHHHHHHhcccHH--HH
Confidence 45554442 366778889988888887666 89999999996 566677777777777777777777644 23
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHH-HHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH-
Q 044122 140 LTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSL-CAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL- 217 (492)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~- 217 (492)
+...++.+++.+...+....++.+..++ +.|+...+. ++....+|.++++.++|++.+..||+..|.+.+++.++.
T Consensus 319 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~ 396 (420)
T PRK09528 319 SILKLLHAFEVPFLLVGVFKYITLNFDV--RLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFT 396 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc--cceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 4456667777666655566666766643 446655543 556788999999999999999999999999988877765
Q ss_pred HHhhheeeec
Q 044122 218 IVLGFVIYET 227 (492)
Q Consensus 218 ~~~~~~~~e~ 227 (492)
++..+.++++
T Consensus 397 ~~~~~~~~~~ 406 (420)
T PRK09528 397 LISVFTLSGD 406 (420)
T ss_pred HHHHHHhcCC
Confidence 3444444543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.5e-10 Score=107.04 Aligned_cols=155 Identities=11% Similarity=-0.003 Sum_probs=113.3
Q ss_pred hHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 044122 62 VVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALAL 140 (492)
Q Consensus 62 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (492)
...|.++++++|.++.+.+++.+........ .++.|+++||+ +||+.+..+.++..+........++. +...
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 292 (375)
T TIGR00899 220 INMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-----GKRRLMLLAALAGVAFYTGLAADNSL--WALL 292 (375)
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3567777777999999999887766554444 78999999996 56777776666655554444444432 2233
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHHh
Q 044122 141 TCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVL 220 (492)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~~ 220 (492)
....+.+++.+...+....+..|..++ ++++.+++++...++|..+++.++|.+.+..||+..|++.+++.++..+.
T Consensus 293 ~~~~~~g~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 369 (375)
T TIGR00899 293 MLQLLNAIFIGILAGIGMLYFQDLMPG---RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFC 369 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 445566777666666666677776543 45688999999999999999999999999999999999988877776666
Q ss_pred hheeee
Q 044122 221 GFVIYE 226 (492)
Q Consensus 221 ~~~~~e 226 (492)
.++++|
T Consensus 370 ~~~~~~ 375 (375)
T TIGR00899 370 LLLIKD 375 (375)
T ss_pred HheecC
Confidence 665653
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-11 Score=114.77 Aligned_cols=131 Identities=17% Similarity=0.210 Sum_probs=92.1
Q ss_pred HhhHHhhhhcCcChHHHHHHHHHhhh-hhhhhhHHhhhcccc-ccCCCCchhHHHHHHHHHHHHHHHHHhcCCchH----
Q 044122 63 VTDYYWKDVQKVQPSTVQIYIGLYYL-PWVMKPIWGIFTDAF-PIKGYHRRPYFVIAGVLGLVSALIVALLGKLPI---- 136 (492)
Q Consensus 63 ~~~~~~~~~~g~s~~~~g~~~s~~~l-~~~~~~~~G~lsDr~-~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~---- 136 (492)
..+||+++ +|++..-.+.+-...-+ +..+||+.|..|||. .++| ||||++..+.+...++.+++.++.+...
T Consensus 54 y~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G-RRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd 131 (498)
T KOG0637|consen 54 YLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYG-RRRPFILAGSLLIAVSLFLIGYAADIGLLLGD 131 (498)
T ss_pred cccHHHHH-cCCCcccccccccccccccceecccccccccccccccc-cccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence 56888877 99988776655444333 455699999999999 7889 9999999999999999888888764321
Q ss_pred -----------HHHHHHHHHHHHHHHHHHhhhhhhhhhcccccc-CcccchHHHHHHHHHHHHHHHHHhHhHh
Q 044122 137 -----------ALALTCLIGITGGMAIADVVIDACIARNSIETR-ALAPDMQSLCAFCSGAGSLIGYSSSGFF 197 (492)
Q Consensus 137 -----------~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~-~~r~~~~~~~~~~~~~G~~lg~~l~~~l 197 (492)
...++...+.-+...+...+..++..|+...+. ++| +++++.....+|..+|..+++++
T Consensus 132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~--Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR--ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc--cchhHHHHHHhcceeeeeccccc
Confidence 112222223334444455567788888875433 333 77777788889999998888743
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-08 Score=93.81 Aligned_cols=351 Identities=10% Similarity=0.058 Sum_probs=194.2
Q ss_pred CcchhhhhHHHhhhcccccchhhhhHhhHHhhhh-cCcChHHHHH-HHHHhhhhhhh-hhHHhhhccccccCCCCchhHH
Q 044122 38 HSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDV-QKVQPSTVQI-YIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYF 114 (492)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~-~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l 114 (492)
+|+....+.+.|+|...+.-+ -+.+.+|+.+. .|++..|+.- +.-+..-.++. -.+...++|.. |.||++
T Consensus 2 ~w~~~~~llc~~gf~~~frPs--EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-----~Ykpvi 74 (412)
T PF01770_consen 2 SWKKITLLLCLFGFFKEFRPS--EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-----RYKPVI 74 (412)
T ss_pred CchHHHHHHHHHHHHHhcCCC--CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-----hhhHHH
Confidence 355666777778788777532 23455566664 8999988742 11111112333 56788999996 789999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhH
Q 044122 115 VIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSS 194 (492)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~ 194 (492)
+++.+...+...++.+.++... .-+.-+..|++.+. .++..+++-...+ +++..++.+....+..+|..++.++|
T Consensus 75 il~~~~~i~t~~lll~~~sv~~--mq~~q~~yg~~~a~-evay~sYiys~v~--~~~yq~vts~~raa~l~g~~~s~~lg 149 (412)
T PF01770_consen 75 ILQALSYIITWLLLLFGTSVLA--MQLMQFFYGLATAA-EVAYYSYIYSVVD--KEHYQKVTSYTRAATLVGRFISSLLG 149 (412)
T ss_pred HHHHHHHHHHHHHHHHHCcHHH--HHHHHHHHHHHHHH-HHHHHHHheeecC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888888876543 22333444555543 4455566655553 34456677777888888888888888
Q ss_pred hHhhh--cCChHHHHHHHhHhHHHHHHhhheeeeccCCC-----c---------cch------hh-------------hh
Q 044122 195 GFFVH--HLGHQGALGILAIPPTLLIVLGFVIYETRATS-----H---------HFE------KK-------------KA 239 (492)
Q Consensus 195 ~~l~~--~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~-----~---------~~~------~~-------------~~ 239 (492)
-.+.. ..+.+...++......+..+..+++|.+++.. . +.+ ++ ..
T Consensus 150 Qllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (412)
T PF01770_consen 150 QLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSR 229 (412)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchH
Confidence 77665 44566666665444444445555666543210 0 000 00 00
Q ss_pred HHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccc-cceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 240 IESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHE-GQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHK 318 (492)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 318 (492)
....+..++++++..++|.++...+.-.+..+......+ ....|... ...+-+....|.+-++..+.+.++++..|+
T Consensus 230 ~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v--~~~~~~~vYNG~VeA~~tllgA~~al~~g~ 307 (412)
T PF01770_consen 230 KSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTV--PPSDNESVYNGAVEAASTLLGAIAALLAGY 307 (412)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhc--CCCCCCcccchHHHHHHHHHHHHHHHHHhH
Confidence 111234456677788889887776544443332221111 11122211 112334445577777777778888888898
Q ss_pred HHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 044122 319 TLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFA 398 (492)
Q Consensus 319 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 398 (492)
+..+..+..-+.++......++++ +.+.. ..+.+...+..++......+.......-++....++.-|.++|
T Consensus 308 v~~~w~~~~~l~l~~~S~l~a~~L-~lm~~-------t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFG 379 (412)
T PF01770_consen 308 VKVNWDRWGELALGVFSLLQAGLL-FLMSF-------TGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFG 379 (412)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHH-HHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeee
Confidence 855554433333333222222111 12211 1222333333344444444444444444566666777788887
Q ss_pred HHHHHHHHHHHH
Q 044122 399 LLMCIDILGSLI 410 (492)
Q Consensus 399 ~~~~~~~lg~~i 410 (492)
+.+++..+-+.+
T Consensus 380 iNtf~Al~LQti 391 (412)
T PF01770_consen 380 INTFVALVLQTI 391 (412)
T ss_pred eHHHHHHHHHHh
Confidence 766655544433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.2e-10 Score=109.13 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=107.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+++|++..+.|++.+...++..++.+..|++.||+|+|+.+..+.++..+..+.. .+. ++....+..-.+
T Consensus 36 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~-~~~---------~~~~~l~~~r~l 105 (412)
T TIGR02332 36 KDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTAT-MFA---------TGPESLYLLRIL 105 (412)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHh---------cCHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999887766666543321 111 111222223334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccCcchhHHHHHHHHHHHH-HH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV-TRTDYRNLWLVILIRNVLRF-AT 446 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~-~~~~~~~~~~~~~~~~~~~~-~~ 446 (492)
.++..+...+....++.+..|+++||+++|+++....+|..+++.+++++.+..+. +..+++. .+.+.++..+ +.
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~---~f~~~~~~~l~~~ 182 (412)
T TIGR02332 106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQW---LFLLEGFPSVILG 182 (412)
T ss_pred HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhH---HHHHHHHHHHHHH
Confidence 44454554555556779999999999999999999999999999999998764211 1112222 4444444433 33
Q ss_pred HHHHhhcCCCCcc
Q 044122 447 LGLIFLVPKGNHS 459 (492)
Q Consensus 447 ~~~~~~~~~~~~~ 459 (492)
.+..+++||++++
T Consensus 183 ~~~~~~~~~~p~~ 195 (412)
T TIGR02332 183 VMTWFWLDDSPDK 195 (412)
T ss_pred HHHhhccCCCccc
Confidence 3344566776543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.1e-10 Score=110.07 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=99.1
Q ss_pred hhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHH
Q 044122 60 FKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIAL 138 (492)
Q Consensus 60 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (492)
....+|.++++++|.+..+.+...+...++..+ .++.|+++||+.+ + +||+......+...+........+......
T Consensus 262 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~-~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T PRK11663 262 INDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN-G-NRGPMNLIFAAGILLSVGSLWLMPFASYVM 339 (434)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc-C-CccHHHHHHHHHHHHHHHHHHHcccccHHH
Confidence 344678888777899999999998888888777 8999999999721 1 233332221111111111111222222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHH
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLI 218 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~ 218 (492)
.....+..+++.............|.. ++++|++..++.+....+|..++|.+.|++.++.||+..|++.+++.++..
T Consensus 340 ~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~ 417 (434)
T PRK11663 340 QAACFFTIGFFVFGPQMLIGMAAAECS--HKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISA 417 (434)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcc--cHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 222222222221111111223345554 346799999999999999999999999999999999999999888877764
Q ss_pred Hhhh
Q 044122 219 VLGF 222 (492)
Q Consensus 219 ~~~~ 222 (492)
+..+
T Consensus 418 ~~~~ 421 (434)
T PRK11663 418 LLLL 421 (434)
T ss_pred HHHH
Confidence 4333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-10 Score=112.75 Aligned_cols=126 Identities=13% Similarity=0.256 Sum_probs=95.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+++|.++.+.+++.+...++.+++.++.+++.||+++|+.+..+..+..+..+.. .+. ++....+....+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~ 114 (398)
T TIGR00895 45 AEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLC-ALA---------TNVTQLLILRFL 114 (398)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHc---------cchHHHHHHHHH
Confidence 4478999999999999999999999999999999999998887766555432221 111 111222223334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
.++..+....+...++.+..|+++|++++++.+....+|..+++.+++.+.+..|+
T Consensus 115 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 115 AGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred HhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 44444555666778889999999999999999999999999999999999887653
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.15 E-value=9e-10 Score=105.94 Aligned_cols=161 Identities=20% Similarity=0.241 Sum_probs=130.5
Q ss_pred cccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchh-HHHHHHHHHHHHHHHHHhc
Q 044122 54 GFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRP-YFVIAGVLGLVSALIVALL 131 (492)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~-~l~~~~~~~~~~~~~~~~~ 131 (492)
...........+.+.++.+|.+..+.++..+...+...+ .+++|+++||+ +||+ .+..+.++..++.+.....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~ 262 (352)
T cd06174 188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-----GRRRLLLLIGLLLAALGLLLLALA 262 (352)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHh
Confidence 333445556677788776699999999999998888777 89999999996 5666 8888888888888888877
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHh
Q 044122 132 GKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILA 211 (492)
Q Consensus 132 ~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~ 211 (492)
++. .......++.+++.+...+...+++.|..++ ++|++.++..+...++|..+++.+.+.+.+..+|+..+++.+
T Consensus 263 ~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~ 338 (352)
T cd06174 263 PSL--ALLLVALLLLGFGLGFAFPALLTLASELAPP--EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILA 338 (352)
T ss_pred ccH--HHHHHHHHHHHHHHhccchhHHHHHHhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHH
Confidence 753 2344556777888888888888888888754 678999999999999999999999999999999999999998
Q ss_pred HhHHHHHHhhhe
Q 044122 212 IPPTLLIVLGFV 223 (492)
Q Consensus 212 ~~~~~~~~~~~~ 223 (492)
++.++..+..++
T Consensus 339 ~~~~i~~i~~~~ 350 (352)
T cd06174 339 ALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHhee
Confidence 888776554443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=106.59 Aligned_cols=120 Identities=8% Similarity=0.072 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
+|+++.++|++.+...++.+++.+..|++.||+++|+.+..+.+...+..+. ..+.. + .+..+....+.+
T Consensus 38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~-~~~~~--~-------~~~~~~~~~~~g 107 (395)
T PRK10054 38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA-IPLVN--N-------VTLVVLFFALIN 107 (395)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH-HHHHh--H-------HHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999887776655443221 11211 1 111111112222
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
...+........+..|..|+++|++++|+.+...++|..++|.+++++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~ 157 (395)
T PRK10054 108 CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM 157 (395)
T ss_pred HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333455677899999999999999999999999999999999875
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-09 Score=104.60 Aligned_cols=155 Identities=16% Similarity=0.142 Sum_probs=102.9
Q ss_pred hhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcC---CchH
Q 044122 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLG---KLPI 136 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~---~~~~ 136 (492)
....|.++++ +|.+..+.+.+.+...++..+ .++.|+++||++ +||+....+.+...++.+.+...+ ....
T Consensus 242 ~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~----~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 316 (402)
T TIGR00897 242 AVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLG----WMNTVRWFGGVGCGIFTLALYYIPQHFGHSF 316 (402)
T ss_pred HHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHHHHHHccCCcH
Confidence 4456777766 899999999888887777666 899999999962 344333333333333322322211 1122
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHH
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTL 216 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~ 216 (492)
.......++.+++.+...+ ..+...+.. |++|++..++.+....+|..++|.+++.+.+..||+..|++.+++.++
T Consensus 317 ~~~~~~~~~~G~~~~~~~~-~~~~~~~~~---~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i 392 (402)
T TIGR00897 317 AVALIIAIALGIFLAGYVP-LAAVFPTLA---PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVV 392 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhC---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 2233344455555544333 334444543 346899999999999999999999999999999999999998888777
Q ss_pred HHHhhhee
Q 044122 217 LIVLGFVI 224 (492)
Q Consensus 217 ~~~~~~~~ 224 (492)
..+...|+
T Consensus 393 ~~~~~~~~ 400 (402)
T TIGR00897 393 SAFLTAFI 400 (402)
T ss_pred HHHHHHHh
Confidence 64444443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-09 Score=104.67 Aligned_cols=145 Identities=11% Similarity=0.049 Sum_probs=104.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
++.++.+.+++.....+...+..++.|++.||+++|+++..+..+..+..+.. .+.. + . +....+.+
T Consensus 33 ~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~-~~~~--~-------~---~~~r~l~G 99 (393)
T PRK11195 33 LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM-LFGI--H-------P---LLAYGLVG 99 (393)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH-HHHH--H-------H---HHHHHHHH
Confidence 67788889999999999999999999999999999999998877766543321 1111 1 0 11123445
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHH
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLI 450 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (492)
...+...+...+++.|.+|+++++++.|+.+...+++..+||.++|++.++. ....+.+...+.+++.+..
T Consensus 100 ~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~---------~~~~~~i~~~~~~~~~~~~ 170 (393)
T PRK11195 100 IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH---------AEAALAVCALIYLLAALFN 170 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 5556666777889999999999999999999999999999999999999853 1223333333333344444
Q ss_pred hhcCCCC
Q 044122 451 FLVPKGN 457 (492)
Q Consensus 451 ~~~~~~~ 457 (492)
+.+|+.+
T Consensus 171 ~~l~~~~ 177 (393)
T PRK11195 171 LFIPRLG 177 (393)
T ss_pred hcCCCCc
Confidence 5677654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-09 Score=105.96 Aligned_cols=152 Identities=10% Similarity=0.069 Sum_probs=107.4
Q ss_pred hhhHhhHHhhhhcCcChHH----HHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCc
Q 044122 60 FKVVTDYYWKDVQKVQPST----VQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKL 134 (492)
Q Consensus 60 ~~~~~~~~~~~~~g~s~~~----~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~ 134 (492)
....++.|..+..+ +..+ .+.+.++..++..+ .+++|+++||+ +||+.+..+.++..++.+...+.++.
T Consensus 238 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
T PRK09874 238 IAPILTLYVRELAG-NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-----GPEKILITALIFSVLLLIPMSFVQTP 311 (408)
T ss_pred HHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHHHHhccH
Confidence 34456667666333 3222 34455555555555 88999999996 66777777777776666666655543
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhH
Q 044122 135 PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPP 214 (492)
Q Consensus 135 ~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~ 214 (492)
. .+.+.+++.+++.+...+...+.+.+.. ++++|++.+++.+....+|..+||.++|.+.+..||+..|++.+++.
T Consensus 312 ~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~ 387 (408)
T PRK09874 312 L--QLGILRFLLGAADGALLPAVQTLLVYNS--SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVV 387 (408)
T ss_pred H--HHHHHHHHHHhhhHhhHHHHHHHHHHhC--CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHH
Confidence 2 3444556677777777666666666655 33568999999999999999999999999999999999999988887
Q ss_pred HHHHHhh
Q 044122 215 TLLIVLG 221 (492)
Q Consensus 215 ~~~~~~~ 221 (492)
++..+..
T Consensus 388 l~~~~~~ 394 (408)
T PRK09874 388 LFNAVYS 394 (408)
T ss_pred HHHHHHH
Confidence 7764433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-09 Score=101.18 Aligned_cols=150 Identities=21% Similarity=0.266 Sum_probs=116.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhh
Q 044122 287 PKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQ 366 (492)
Q Consensus 287 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (492)
.-+++|.|+.+.|.+.+.++.+..+++++...+.+|++||+++.....++.+..+.. .+ -++....+..-
T Consensus 39 iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~-al---------Ap~f~~Ll~aR 108 (394)
T COG2814 39 IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS-AL---------APSFAVLLLAR 108 (394)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH-HH---------hccHHHHHHHH
Confidence 335589999999999999999999999999999999999999988766666543321 11 12333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHH
Q 044122 367 CVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFAT 446 (492)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 446 (492)
.+.+...+..+........+.+|+++|+++.|+..+-..++..+|..++.++.|++|++. .|.+.+++.++.
T Consensus 109 ~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~--------~F~~ia~l~ll~ 180 (394)
T COG2814 109 ALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA--------TFLAIAVLALLA 180 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH--------HHHHHHHHHHHH
Confidence 556666677777777888999999999999999999999999999999999999998642 455555555555
Q ss_pred HHHHh-hcC
Q 044122 447 LGLIF-LVP 454 (492)
Q Consensus 447 ~~~~~-~~~ 454 (492)
.+..+ .+|
T Consensus 181 ~~~~~~~lP 189 (394)
T COG2814 181 LLLLWKLLP 189 (394)
T ss_pred HHHHHHhCC
Confidence 55544 788
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.3e-10 Score=109.48 Aligned_cols=153 Identities=12% Similarity=0.114 Sum_probs=108.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+++|+++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..+..+.. .+. ++....+....+
T Consensus 40 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~-~~~---------~~~~~l~~~~~l 109 (405)
T TIGR00891 40 GEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLAC-GFA---------PGYITMFIARLV 109 (405)
T ss_pred HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHh---------ccHHHHHHHHHH
Confidence 3378999999999999999999999999999999999999888766555433221 111 122222333345
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLG 448 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (492)
.+...+........++.|..|+++|+++.++.+....+|..+++.+++.+.+..+. .+. ..+.+.++..++..+
T Consensus 110 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~---~w~---~~f~~~~~~~~~~~~ 183 (405)
T TIGR00891 110 IGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD---GWR---ALFFISILPIIFALW 183 (405)
T ss_pred HHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---cHH---HHHHHHHHHHHHHHH
Confidence 55555555666677889999999999999999999999999999999998886541 122 233444444444444
Q ss_pred HHhhcCCCC
Q 044122 449 LIFLVPKGN 457 (492)
Q Consensus 449 ~~~~~~~~~ 457 (492)
.....||++
T Consensus 184 ~~~~~~~~~ 192 (405)
T TIGR00891 184 LRKNIPEAE 192 (405)
T ss_pred HHHhCCCCh
Confidence 445667654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=105.65 Aligned_cols=129 Identities=13% Similarity=0.070 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
.+.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..+..+.... .. ...-.+.+..+....+.+
T Consensus 29 ~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~l~g 103 (365)
T TIGR00900 29 GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF-VA----LLGGLNIWQVYVLAGILA 103 (365)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH-HH----HcCCCcHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999988876665543332211 11 000112223333344555
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
+..+....+..+++.|..|+++|++.++..+....+|..+++.+++.+.++.|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 157 (365)
T TIGR00900 104 IAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI 157 (365)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 666666777778889999999999999999999999999999999999987663
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-09 Score=106.51 Aligned_cols=131 Identities=9% Similarity=0.021 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
+|.|+.+.|++.+...++..++.++.|++.||+|+|+.+..+.+...+..+....... .......+....+....+.+
T Consensus 46 lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~r~l~G 123 (392)
T PRK12382 46 LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAI--LPVSAPFKFALLVVGRLILG 123 (392)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhc--cccchhHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999988876655543222111100 00000011122233333444
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
...+...........+..|+++|+++++......++|..++|.+++.+.++.|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (392)
T PRK12382 124 FGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG 176 (392)
T ss_pred HHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44444444555677899999999999999999999999999999999988765
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-09 Score=105.44 Aligned_cols=151 Identities=11% Similarity=0.106 Sum_probs=106.9
Q ss_pred hHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 044122 62 VVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALAL 140 (492)
Q Consensus 62 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (492)
..+|.++++ .|.+..+.+++.++..+...+ +++.|+++||+ +||+++..+..+..++.+... +. .. ..
T Consensus 221 ~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~~l~~~~~~~~~~~~~~~--~~-~~--~~ 289 (381)
T PRK03633 221 GLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-----GRLLVLRVQVFVVILGSIAML--SQ-AA--MA 289 (381)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-----CcHHHHHHHHHHHHHHHHHHh--hh-HH--HH
Confidence 346777776 799999999988888777666 88999999996 677777777766666544432 21 11 22
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHHh
Q 044122 141 TCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVL 220 (492)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~~ 220 (492)
....+.+++.....+...+.+.|..++ ++++...+..+...++|..+||.++|++.++.||++.|.+.+.+.++....
T Consensus 290 ~~~~l~g~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 290 PALFILGAAGFTLYPVAMAWACEKVEH--HELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 233444555555556666666676633 345666777777889999999999999999999999999887777655444
Q ss_pred hheee
Q 044122 221 GFVIY 225 (492)
Q Consensus 221 ~~~~~ 225 (492)
.++.+
T Consensus 368 ~~~~~ 372 (381)
T PRK03633 368 LLRKA 372 (381)
T ss_pred HHhcc
Confidence 44333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=105.43 Aligned_cols=126 Identities=14% Similarity=0.169 Sum_probs=98.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+++|+++.+.++..+...++..++.++.|++.||+|+|+.+..+.++..+..+.. .+. ++.+..+....+
T Consensus 48 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~-~~~---------~~~~~l~~~r~l 117 (394)
T PRK10213 48 QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLV-SFA---------NSFSLLLIGRAC 117 (394)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH-HHH---------ChHHHHHHHHHH
Confidence 4479999999999999999999999999999999999999988877766543221 111 122223333345
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
.+...+...+....++.+.+|+++++++.++.....++|..++|.+++.+.++.|+
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw 173 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW 173 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 55555665666677889999999999999999999999999999999999987653
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=106.79 Aligned_cols=156 Identities=10% Similarity=0.112 Sum_probs=112.3
Q ss_pred hHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 044122 62 VVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALAL 140 (492)
Q Consensus 62 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (492)
..++.++++ .|.+ +.++..+.+.++..+ +++.|++.||+ +||+.+..+.++..++.++....++.. ..+
T Consensus 237 ~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 306 (399)
T PRK05122 237 TFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-----GGLRVAIVSLLVEILGLLLLWLAPSPW--MAL 306 (399)
T ss_pred HHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhccHH--HHH
Confidence 345666665 5653 445555666666666 78999999996 567778777777777777777666533 234
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHHh
Q 044122 141 TCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVL 220 (492)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~~ 220 (492)
...++.+++.+...+.......+.. ++++|++..++++....+|..+++.+.|++.++.||+..|++.+++.++..+.
T Consensus 307 ~~~~l~G~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 384 (399)
T PRK05122 307 IGAALTGFGFSLVFPALGVEAVKRV--PPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLAL 384 (399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 4566777777766665556666655 33678999999999999999999999999999999999999888877776554
Q ss_pred hheeeeccC
Q 044122 221 GFVIYETRA 229 (492)
Q Consensus 221 ~~~~~e~~~ 229 (492)
.++++++++
T Consensus 385 ~~~~~~~~~ 393 (399)
T PRK05122 385 TWLLYRRAP 393 (399)
T ss_pred HHHhccccc
Confidence 444554433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-09 Score=103.87 Aligned_cols=146 Identities=12% Similarity=-0.003 Sum_probs=103.1
Q ss_pred HhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHH-HhcCCchHHHHH
Q 044122 63 VTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIV-ALLGKLPIALAL 140 (492)
Q Consensus 63 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (492)
.++++++++.|.+..+.+++.+...++..+ +++.|+++||+ +||.. ..+..+..++.... ...++. ....
T Consensus 227 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----~~~~~-~~~~~~~~~~~~~l~~~~~~~--~~~~ 298 (390)
T PRK03545 227 YIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-----PSGFL-LIAIALLLVCLLLLLPAANSE--WHLS 298 (390)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-----chhHH-HHHHHHHHHHHHHHHHHhchH--HHHH
Confidence 456677777899999999998888877666 89999999996 45544 34444444443332 333332 2233
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHH
Q 044122 141 TCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIV 219 (492)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~ 219 (492)
...++.+++.+...+...+.+.+.. +++|++++++++....+|..+|+.++|++.+++|++..|++.+++.++..+
T Consensus 299 ~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~ 374 (390)
T PRK03545 299 VLSIFWGIAIMCIGLAMQVKVLKLA---PDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALV 374 (390)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Confidence 4455556665544444455555544 346788999999999999999999999999999999999998888777633
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=107.89 Aligned_cols=188 Identities=13% Similarity=0.108 Sum_probs=130.6
Q ss_pred HHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhH
Q 044122 251 CKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLF 330 (492)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 330 (492)
+..+|||.++.+.+...+.+............+..+ ..-|+...+++.....+..++.++++|.+.||+++|++++
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~----lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili 79 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ----LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI 79 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 345788888877666666555432222222222222 3457888999988999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q 044122 331 FAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLI 410 (492)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 410 (492)
.+.++..+..+....+. ..+....+.+++..++.+.+..+..+...+.+.+++|+++...+.++.+...++...+
T Consensus 80 ~~~~~~~~~~~~L~~l~-----~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~i 154 (524)
T PF05977_consen 80 LSQLLRALVALLLAVLA-----FFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARII 154 (524)
T ss_pred HHHHHHHHHHHHHHHHH-----HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhc
Confidence 88876665433222221 1233344455556667777777777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhcCC
Q 044122 411 SKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPK 455 (492)
Q Consensus 411 ~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (492)
||.++|.+....|.. ..+.+.++..++.+..+...+.
T Consensus 155 GPalgG~Lva~~G~~--------~~f~inalsfl~~i~~l~~~~~ 191 (524)
T PF05977_consen 155 GPALGGILVAFFGAA--------AAFLINALSFLISILALLRWKP 191 (524)
T ss_pred cchHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHccc
Confidence 999999999987742 2444444444444444444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=107.62 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=96.9
Q ss_pred hhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchh-HHHHHHHHHHHHHHHHHhcCCchHH
Q 044122 60 FKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRP-YFVIAGVLGLVSALIVALLGKLPIA 137 (492)
Q Consensus 60 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~-~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (492)
....+|.|++++.|.+..+.+++...+.++..+ .++.|+++||+.+ +||. ..+....+..++.+.+...+.....
T Consensus 272 ~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~---~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 348 (452)
T PRK11273 272 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---GNRGATGVFFMTLVTIATIVYWLNPAGNPT 348 (452)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCcchHHHHHHHHHHHHHHHHHHhcccChH
Confidence 345778999888899999999888877777666 8999999999721 3332 3332233333333333232221211
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHH-HHHHhHhHhhhcCChHHHHHHHhHhHHH
Q 044122 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSL-IGYSSSGFFVHHLGHQGALGILAIPPTL 216 (492)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~-lg~~l~~~l~~~~gw~~~f~i~~~~~~~ 216 (492)
......++.+............+..|.. ++++|++.+++.+....+|.. ++|.+.|++.++.||+..|++.++..++
T Consensus 349 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~--p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~ 426 (452)
T PRK11273 349 VDMACMIVIGFLIYGPVMLIGLHALELA--PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 426 (452)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHc--ChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHH
Confidence 1222223333322111112223445655 336789999999888888765 4799999999999999999988777666
Q ss_pred HHH
Q 044122 217 LIV 219 (492)
Q Consensus 217 ~~~ 219 (492)
.++
T Consensus 427 ~~~ 429 (452)
T PRK11273 427 AVI 429 (452)
T ss_pred HHH
Confidence 533
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-09 Score=105.38 Aligned_cols=151 Identities=11% Similarity=-0.031 Sum_probs=106.9
Q ss_pred hHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 044122 62 VVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALAL 140 (492)
Q Consensus 62 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (492)
..+|.++++ .|.+..+.+.+.+...++..+ +++.|+++||+ +||+.+..+.+...++.+.....++... +.
T Consensus 241 ~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 312 (406)
T PRK11551 241 NWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-----RPRRVVLLIYAGILASLAALAAAPSFAG--ML 312 (406)
T ss_pred HHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHhcCcHHH--HH
Confidence 346777776 899999999998888887766 89999999996 6677776666655566555555554322 23
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcC-ChHHHHHHHhHhHHHHHH
Q 044122 141 TCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHL-GHQGALGILAIPPTLLIV 219 (492)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~-gw~~~f~i~~~~~~~~~~ 219 (492)
...++.+++.+...+...++..+..+ +++|++..++.+....+|..+||.++|++.++. +|+..+++.....++..+
T Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 390 (406)
T PRK11551 313 LAGFAAGLFVVGGQSVLYALAPLFYP--TQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAAL 390 (406)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcc--hhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHH
Confidence 33444555555555566677777773 467899999999999999999999999998875 455666665555444444
Q ss_pred hhh
Q 044122 220 LGF 222 (492)
Q Consensus 220 ~~~ 222 (492)
..+
T Consensus 391 ~~~ 393 (406)
T PRK11551 391 AAL 393 (406)
T ss_pred HHH
Confidence 333
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-09 Score=109.72 Aligned_cols=157 Identities=8% Similarity=0.112 Sum_probs=112.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|++..+.+++.++..++.+++.+++|++.||+|+|+.++++.++..+..++. .+.. +....+..-++.
T Consensus 196 ~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~-afa~---------s~~~llv~R~l~ 265 (742)
T TIGR01299 196 DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFS-SFVQ---------GYGFFLFCRLLS 265 (742)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHHh---------hHHHHHHHHHHH
Confidence 378899999999999999999999999999999999999988766655443321 1111 112222333455
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----CcchhHHHHHHHHHHHH
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRT-----DYRNLWLVILIRNVLRF 444 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~-----~~~~~~~~~~~~~~~~~ 444 (492)
++..+...+....++.+.+|++.||+.+++......+|..+++.++..+...+|+... ....+..++.++++..+
T Consensus 266 G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~l 345 (742)
T TIGR01299 266 GFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCV 345 (742)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHH
Confidence 5555666667778889999999999999999999999999999999888876654211 11122334555555555
Q ss_pred HHHHHHhhcCCC
Q 044122 445 ATLGLIFLVPKG 456 (492)
Q Consensus 445 ~~~~~~~~~~~~ 456 (492)
+.++..+++||.
T Consensus 346 l~ll~~~~lPES 357 (742)
T TIGR01299 346 FAIGALTFMPES 357 (742)
T ss_pred HHHHHHHHcCCC
Confidence 556666678876
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-09 Score=104.10 Aligned_cols=125 Identities=15% Similarity=0.187 Sum_probs=96.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+++|.++.+.+++.+...++..++.++.|++.||+++|+.+..+.++..+..+.. ... ++....+....+
T Consensus 33 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~l 102 (385)
T TIGR00710 33 ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL-ALS---------NNIETLLVLRFV 102 (385)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH-HHH---------ccHHHHHHHHHH
Confidence 3479999999999999999999999999999999999999888766555433221 111 111222223334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
.++..+....+...++.|..|+++|++.+|+.+....+|..+++.+++.+.++.+
T Consensus 103 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 157 (385)
T TIGR00710 103 QAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS 157 (385)
T ss_pred HHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4555555666677788999999999999999999999999999999999988765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=105.83 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=111.4
Q ss_pred hhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHH
Q 044122 60 FKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIAL 138 (492)
Q Consensus 60 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (492)
....+|.|++|++|.++.+.+.+.+.+.++..+ .++.|+++||+ +||+.+.....+..+...+....++...
T Consensus 224 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 296 (394)
T PRK03699 224 FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-----DLQRILTVLAGLALVLMYLFVNTDDPSH-- 296 (394)
T ss_pred HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-----chhhHHHHHHHHHHHHHHHHHHcCCchH--
Confidence 345678899888999999999999888887777 89999999996 5666666666666665555555555432
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHH
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLI 218 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~ 218 (492)
.....++.+++.+...+...+...+..+ +++++..+.......+|..++|.+.|++.+..|++..+++.+++.++..
T Consensus 297 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (394)
T PRK03699 297 LLYAILGLGFFSSAIYTTIITLGSQQTK---VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF 373 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH
Confidence 2233445555555444544555555443 2345667888888899999999999999999999999998877776664
Q ss_pred Hhhheee
Q 044122 219 VLGFVIY 225 (492)
Q Consensus 219 ~~~~~~~ 225 (492)
+.+..++
T Consensus 374 ~~~~~~~ 380 (394)
T PRK03699 374 VMCILLG 380 (394)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-09 Score=101.88 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=116.5
Q ss_pred hhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHH
Q 044122 60 FKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIAL 138 (492)
Q Consensus 60 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (492)
.....|++++| .|.+..++|.+.++..+...+ .++.|++.||+ ++|+.+.++.+...+..+++++.++.. .
T Consensus 224 ~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~--~ 295 (382)
T TIGR00902 224 YYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-----SARDLLLISAIACVGRWAIIGAIEAFP--L 295 (382)
T ss_pred HHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-----CHHHHHHHHHHHHHHHHHHHHhHhhHH--H
Confidence 34466888877 999999999988877776666 78899999996 678888999999999888888877643 3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHH-HHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCA-FCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL 217 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~ 217 (492)
.+....+.++..+...+....++.+. + +++|++.+++++ ....+|..+|+.++|++.+++|+ ..|++.+++.++.
T Consensus 296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~--~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T TIGR00902 296 IFLLQILHCGTFAVCHLAAMRYIAAQ-P--GSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-C--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 44557888888888888877777764 3 345788899876 46789999999999999999997 6677777766654
Q ss_pred HHh
Q 044122 218 IVL 220 (492)
Q Consensus 218 ~~~ 220 (492)
.+.
T Consensus 372 ~~~ 374 (382)
T TIGR00902 372 FFL 374 (382)
T ss_pred HHH
Confidence 433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-08 Score=89.03 Aligned_cols=236 Identities=12% Similarity=0.097 Sum_probs=137.8
Q ss_pred hhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 044122 70 DVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITG 148 (492)
Q Consensus 70 ~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (492)
+++|.+..|++.+....+....+ .++.|.++||+ |||+.-+..+++..++++. -..+++ ..+++.|++.|+
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-----Grk~~cl~~cily~~scl~-k~~~~~--~~L~~GRvlgGi 133 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-----GRKKACLLFCILYSLSCLT-KHSSNY--PVLLLGRVLGGI 133 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHHHHH-Hhcccc--HHHHHHHHHHHH
Confidence 34999999999988887776555 99999999996 5565555556666666543 334543 457789999999
Q ss_pred HHHHHHhhhhhhhh-hccccc-c-CcccchHHHHH-HHHHHHHHHHHHhHhHhhhcCC--hHHHHHHHhHhHHHHHH-hh
Q 044122 149 GMAIADVVIDACIA-RNSIET-R-ALAPDMQSLCA-FCSGAGSLIGYSSSGFFVHHLG--HQGALGILAIPPTLLIV-LG 221 (492)
Q Consensus 149 g~~~~~~~~~a~~~-~~~~~~-~-~~r~~~~~~~~-~~~~~G~~lg~~l~~~l~~~~g--w~~~f~i~~~~~~~~~~-~~ 221 (492)
+......+-++... |..++. | +..+...+... ....+-.+++.+++.++.+..+ ...+|.....+.++..+ +.
T Consensus 134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL 213 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence 99988887777663 332111 1 11122222221 2233344555566666776554 47788877666666533 33
Q ss_pred heeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHH
Q 044122 222 FVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVI 301 (492)
Q Consensus 222 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 301 (492)
..-+|+..+..+. .+..++.+ +..+.++++|+++.+.+...+.-...+ ...+.|.+... .+-.+.-.|++
T Consensus 214 ~~W~ENyg~~~~~--~~~~~~~~---~a~~~i~~d~ril~LG~~qslFE~smy---~FVflWtPaL~--~~~~~~P~GlI 283 (354)
T PF05631_consen 214 KTWPENYGDTSSS--SSLSGSFR---EAWRAILSDPRILLLGLIQSLFEGSMY---LFVFLWTPALD--PDDEELPLGLI 283 (354)
T ss_pred hcccccCCCcccc--cchHHHHH---HHHHHHHcCchhHHHHHHHHHHHHHHH---Hheeeeeceec--CCCCCCCchHH
Confidence 3344544322111 11112222 234455667888776554444333221 12234443321 11123347889
Q ss_pred HHHHHHHHHHHHHHHHHHHccC
Q 044122 302 YALGAVASIIGVLIYHKTLKDY 323 (492)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~r~ 323 (492)
++...+..++|+.+..++..|.
T Consensus 284 FssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 284 FSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999998776543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-09 Score=108.30 Aligned_cols=148 Identities=14% Similarity=0.048 Sum_probs=103.0
Q ss_pred hhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 044122 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALA 139 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (492)
...+|.++++++|.+..+.+++.+...++..+ .++.|+++||+ +||+.++.+.++..+..+......+......
T Consensus 295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (496)
T PRK03893 295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-----GTRKAYVCSLLISQLLIIPVFAIGGANVWVL 369 (496)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 45678898877999999999999998888777 89999999996 5666676666665555444433333222222
Q ss_pred HHHHHHHH-HHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHH
Q 044122 140 LTCLIGIT-GGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTL 216 (492)
Q Consensus 140 ~~~~~l~~-~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~ 216 (492)
....++.+ .+.+ ..+...+++.+..+ +++|++.+++.+....+|..+||.++|.+.+++||+..+.+.+....+
T Consensus 370 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 370 GLLLFFQQMLGQG-ISGLLPKLIGGYFD--TEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHHHHHhcc-cchhhHHHHHhhCC--HHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 22222222 2222 23344556667664 356899999999999999999999999999999999887665544333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-09 Score=107.52 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=106.5
Q ss_pred hHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHh---cCCch--
Q 044122 62 VVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVAL---LGKLP-- 135 (492)
Q Consensus 62 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~---~~~~~-- 135 (492)
...|.+.++ +|.+..+.++......+...+ .++.|+++||+ +||+.+..+.++..++.+++++ .....
T Consensus 305 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (481)
T TIGR00879 305 YYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-----GRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378 (481)
T ss_pred HHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 344555544 899998888887777776655 88999999996 5677777777766666655552 11110
Q ss_pred ---HHHHHHHHHHHHHHHHHH-HhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHh
Q 044122 136 ---IALALTCLIGITGGMAIA-DVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILA 211 (492)
Q Consensus 136 ---~~~~~~~~~l~~~g~~~~-~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~ 211 (492)
....+....+...+.+.. .+....++.|..+ +++|++.+++.+...++|.++++.+.+.+.++.+|++.|++.+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~ 456 (481)
T TIGR00879 379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFP--LSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFG 456 (481)
T ss_pred cchhHHHHHHHHHHHHHHHccccCeehhhhhccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHH
Confidence 111111112222222221 2334455567663 3568999999999999999999999999999999999999888
Q ss_pred HhHHHHHH-hhheeeeccC
Q 044122 212 IPPTLLIV-LGFVIYETRA 229 (492)
Q Consensus 212 ~~~~~~~~-~~~~~~e~~~ 229 (492)
++.++..+ ..++.||+++
T Consensus 457 ~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 457 GLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred HHHHHHHHHHheecccCCC
Confidence 88777644 4455666543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=109.13 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=108.5
Q ss_pred hHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 044122 62 VVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALAL 140 (492)
Q Consensus 62 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (492)
..+++|.++ +|.+..+.+++.++..++..+ +|+.|+++||.. .+.+|+..+..+.++..++.+++...++.. .++
T Consensus 262 ~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~ 337 (455)
T TIGR00892 262 IFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKW-IRPHVQYLFSFALLFNGLTHLLCALAGDYT--GLV 337 (455)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHHHHHHHHHHHHhchHH--HHH
Confidence 356777776 899999999999988887666 999999999841 111222233333344444444555555433 344
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcC-ChHHHHHHHhHhHHHH
Q 044122 141 TCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHL-GHQGALGILAIPPTLL 217 (492)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~-gw~~~f~i~~~~~~~~ 217 (492)
..+++.+++.+...+...+++.+..+ ++++++.+++++...++|.++||.++|.+.+.. +|+..|++.+++.++.
T Consensus 338 i~~~~~G~~~g~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 338 IYCIFFGLSFGSVGALLFEVLMDLVG--AQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSA 413 (455)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhh--HHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHH
Confidence 55667778877777777788888774 356899999999999999999999999999887 5999999887766554
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-09 Score=102.06 Aligned_cols=160 Identities=13% Similarity=-0.058 Sum_probs=110.6
Q ss_pred hhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHH
Q 044122 60 FKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIAL 138 (492)
Q Consensus 60 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (492)
....+|+++++ .|.+..+.|...+.+.++..+ ++++|+++||+ +||+.+..+..+..++.+++...++....
T Consensus 224 ~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 296 (393)
T PRK09705 224 LIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-----DRRKLLMLALVLQLVGFCGFIWLPLQLPV- 296 (393)
T ss_pred HHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHccchHHH-
Confidence 34467888877 899999999999998888777 89999999996 56777777776666665555443432211
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC-hHHHHHHHhHhHHHH
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG-HQGALGILAIPPTLL 217 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g-w~~~f~i~~~~~~~~ 217 (492)
.. .++.+++.+...+.......+..+ ++++|++..++.+....++..++|.+.|++.++.| |...|.+.++..++.
T Consensus 297 ~~--~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (393)
T PRK09705 297 LW--AMVCGLGLGGAFPLCLLLALDHSV-QPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGL 373 (393)
T ss_pred HH--HHHHHHhccchHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 11 233455555444444444444442 23568999999999999999999999999999886 777777776666655
Q ss_pred H-HhhheeeeccC
Q 044122 218 I-VLGFVIYETRA 229 (492)
Q Consensus 218 ~-~~~~~~~e~~~ 229 (492)
. ..+.+.||++.
T Consensus 374 ~~~~~~~~~~~~~ 386 (393)
T PRK09705 374 MIITLRFAPARFP 386 (393)
T ss_pred HHHHHHhcccccc
Confidence 3 34455565543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.1e-09 Score=100.29 Aligned_cols=149 Identities=18% Similarity=0.249 Sum_probs=107.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..+..+.. .+. ++.+..+....+.+
T Consensus 27 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~l~g 96 (352)
T PF07690_consen 27 LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL-AFA---------SNFWLLLIARFLLG 96 (352)
T ss_dssp STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH-HHH---------CCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh-hhh---------hhHHHHhhhccccc
Confidence 78999999999999999999999999999999999998888777666542221 111 22233344445666
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHH-
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGL- 449 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~- 449 (492)
+..+........++.+..|+++|++.+++.+...++|..+++.+++.+.+..++.. .+.+.++..++..+.
T Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~--------~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 97 IGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRW--------AFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCC--------HHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccc--------ccccccchhhhhhhhH
Confidence 66677777788889999999999999999999999999999999999887665321 344444444444432
Q ss_pred HhhcCCCC
Q 044122 450 IFLVPKGN 457 (492)
Q Consensus 450 ~~~~~~~~ 457 (492)
....++++
T Consensus 169 ~~~~~~~~ 176 (352)
T PF07690_consen 169 ILFLPEPP 176 (352)
T ss_dssp HCCC---S
T ss_pred hhhhhhcc
Confidence 23444433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-09 Score=102.48 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=102.7
Q ss_pred hhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHH-HH-HHHHhcCCc
Q 044122 58 SFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLV-SA-LIVALLGKL 134 (492)
Q Consensus 58 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~-~~-~~~~~~~~~ 134 (492)
......+|.++++++|.+..+.+.+.+...+...+ .+++|+++||+ +||+.+..+..+..+ +. +......+.
T Consensus 236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (394)
T TIGR00883 236 YLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-----GRRPVLIIFTVLAALLAVPLLMALLDSG 310 (394)
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455678888777999999999888888877666 89999999996 556655544333332 21 222222221
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHH-HHHHHHHHHHHHHHhHhHhhhcCC-hHHHHHHHhH
Q 044122 135 PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSL-CAFCSGAGSLIGYSSSGFFVHHLG-HQGALGILAI 212 (492)
Q Consensus 135 ~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~l~~~l~~~~g-w~~~f~i~~~ 212 (492)
..........+.+++.+...+...+++.|..++ ++|++..++ ...+..+|..++|.++|++.++.| |+..++...+
T Consensus 311 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 311 SFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT--EVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc--cceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 222333445566677766777788888888854 557887776 345667899999999999999988 8877766554
Q ss_pred hH
Q 044122 213 PP 214 (492)
Q Consensus 213 ~~ 214 (492)
..
T Consensus 389 ~~ 390 (394)
T TIGR00883 389 LA 390 (394)
T ss_pred HH
Confidence 33
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.3e-08 Score=97.47 Aligned_cols=158 Identities=15% Similarity=0.060 Sum_probs=104.3
Q ss_pred hHhhHHhhhhcCcChHHHHHHHH-Hhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHH---HHhcCCchH
Q 044122 62 VVTDYYWKDVQKVQPSTVQIYIG-LYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALI---VALLGKLPI 136 (492)
Q Consensus 62 ~~~~~~~~~~~g~s~~~~g~~~s-~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~---~~~~~~~~~ 136 (492)
...++++.+++|.+..+++++.. ...++..+ .++.|+++||+ +||+.+.++.++..++.+. .+...+ +.
T Consensus 243 ~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-----g~~~~l~i~~~l~~l~~l~~~~l~~~~~-~~ 316 (491)
T PRK11010 243 SLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-----SLFRALMIFGILQGVSNAGYWLLSITDK-NL 316 (491)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhccc-cH
Confidence 34566766679999999999875 44456666 88999999997 5555555554444443322 223222 22
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHH
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTL 216 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~ 216 (492)
..+....++..+..+.......++..+..++ +.+++.+++.+...++|..+++.+.|++.+..||+..|.+.+++.+.
T Consensus 317 ~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~--~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~ 394 (491)
T PRK11010 317 YSMGAAVFFENLCGGMGTAAFVALLMTLCNK--SFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVP 394 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 2222233444444444444455666666643 45677888888888999999988999999999999999988888777
Q ss_pred HHHhhheeeec
Q 044122 217 LIVLGFVIYET 227 (492)
Q Consensus 217 ~~~~~~~~~e~ 227 (492)
..+...+++++
T Consensus 395 ~l~~~~~~~~~ 405 (491)
T PRK11010 395 GLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHhc
Confidence 65544445543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=99.19 Aligned_cols=124 Identities=13% Similarity=0.115 Sum_probs=93.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|.+..+.|++.+...++..++.++.|++.||+|+|+.+..+..+..+..+. ..+. ++.+..+....+.
T Consensus 32 ~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l-~~~~---------~~~~~l~~~r~l~ 101 (382)
T PRK10091 32 DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM-FTLS---------SSYLMLAIGRLVS 101 (382)
T ss_pred HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH-HHHh---------CcHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999998887766653322 1111 1222223333344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
+...+...........+..|+++++++++.......+|..+++.+++++.+..+
T Consensus 102 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 155 (382)
T PRK10091 102 GFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS 155 (382)
T ss_pred HhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc
Confidence 444444444455667888999999999999999999999999999999887654
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-08 Score=100.70 Aligned_cols=160 Identities=9% Similarity=-0.001 Sum_probs=103.2
Q ss_pred hhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHh--cCCchHH
Q 044122 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVAL--LGKLPIA 137 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~--~~~~~~~ 137 (492)
....|.|+++++|.+..+...+..+..+...+ .+++|+++||+ +||+.++.+.++..++.+.+.. ..+....
T Consensus 270 ~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (438)
T PRK09952 270 TAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-----GRRRVYITGALIGTLSAFPFFMALEAQSIFW 344 (438)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 34567787777898887655444444444444 78999999996 5677777776655544332222 1211222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHH-HHHHHHHHHHHHhHhHhhhcC--ChHHHHHHHhHhH
Q 044122 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCA-FCSGAGSLIGYSSSGFFVHHL--GHQGALGILAIPP 214 (492)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~lg~~l~~~l~~~~--gw~~~f~i~~~~~ 214 (492)
.++...++.+++.+...+...++++|..+. +.|+...++.+ .+..+|..++|.+.+++.+.. +|+..+...++..
T Consensus 345 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~--~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~ 422 (438)
T PRK09952 345 IVFFSIMLANIAHDMVVCVQQPMFTEMFGA--SYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGC 422 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCc--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 223334455666666666677888888854 56777777644 345588899999999998743 4888888777777
Q ss_pred HHHHHhhheeeec
Q 044122 215 TLLIVLGFVIYET 227 (492)
Q Consensus 215 ~~~~~~~~~~~e~ 227 (492)
++..+..+.++|+
T Consensus 423 ~i~~v~~~~~~~~ 435 (438)
T PRK09952 423 LISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHcccc
Confidence 6665555666664
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=105.74 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
+|+++.+.+++.+...++..++.++.|++.||+++|+.+..+.++..+..+.. .+. ++.+..+....+.+
T Consensus 25 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~g 94 (379)
T TIGR00881 25 IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF-GFS---------TSLWVMAALWALNG 94 (379)
T ss_pred hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHH-HHh---------hhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999888876665543321 111 12222233333444
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhc
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISK-WGGGIVLHLLH 423 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~-~l~g~l~~~~g 423 (492)
+..+........++.+..|+++|+++.++.+....+|..+++ .+++.+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 148 (379)
T TIGR00881 95 IFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS 148 (379)
T ss_pred hhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC
Confidence 444555666677889999999999999999999999999999 46666655443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=102.10 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=94.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
+++++..+.|.+.+...++..++.++.|++.||+++|+.+..+.++..+..++.. +.. . ......+....+.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~--~-----~~~~~l~~~r~~~ 141 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIP-WAA--G-----GGIALVVFCRVIQ 141 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHH-HHH--H-----cCchHHHHHHHHH
Confidence 4789999999999999999999999999999999999998887665554332211 111 0 1111223333455
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
++..+...+....++.+..|+++|++++|+.+....+|..+++.+.+.+.+.
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~ 193 (465)
T TIGR00894 142 GLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES 193 (465)
T ss_pred HHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555666666677889999999999999999999999999999999999876
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-08 Score=97.45 Aligned_cols=124 Identities=11% Similarity=0.156 Sum_probs=95.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|+++.+.+++.+...++..++.++.|++.||+++|+.+..+..+..+..+.. .+. ++....+....+.
T Consensus 20 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~-~~~---------~~~~~~~~~~~l~ 89 (377)
T PRK11102 20 DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC-ALA---------QTIDQLIYMRFLH 89 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHH-HHH---------ccHHHHHHHHHHH
Confidence 378999999999999999999999999999999999998888766655443321 111 1122223333445
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
++..+....+...++.+..|+++|++.+++.+....+|..++|.+++.+.++.+
T Consensus 90 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 143 (377)
T PRK11102 90 GLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS 143 (377)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 555555566677788999999999999999999999999999999999988765
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-08 Score=97.35 Aligned_cols=147 Identities=9% Similarity=-0.092 Sum_probs=102.8
Q ss_pred HhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcC---CchHHH
Q 044122 63 VTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLG---KLPIAL 138 (492)
Q Consensus 63 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~---~~~~~~ 138 (492)
..|.++++++|.++.+.++......++..+ .++.|+++||+ +||+.+..+.++..++.++....+ +.....
T Consensus 237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 311 (406)
T PRK15402 237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-----PLRSLIRMGLWPMVAGLLLAALATVISSHAYLW 311 (406)
T ss_pred HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHcccccHHH
Confidence 457777777999999999877666666666 88999999996 667777777777666666555432 222233
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL 217 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~ 217 (492)
.+....+.++|.+...+......... ++++|++..+..+....+|..+|+.+++.+.+..++....+..++..++.
T Consensus 312 ~~~~~~~~g~g~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 312 LTAGLSLYAFGIGLANAGLYRLTLFS---SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhh---ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 34455666777766555444443322 22578999999999999999999999999998888776555554444444
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-08 Score=99.72 Aligned_cols=162 Identities=9% Similarity=0.047 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHH
Q 044122 292 AFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHI 371 (492)
Q Consensus 292 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (492)
+.+..+.+++.+...++.+++.++.+++.||+|+|+.+..+.++..+..++. .+.. +. ....+....+..-.+.++
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~-~~~~--~~-~~~~~~~~~~~~r~l~G~ 127 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVAS-GLSP--GS-SPKSVMATLCFWRFWLGV 127 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH-HHcc--Cc-ccchHHHHHHHHHHHHHH
Confidence 4566777888899999999999999999999999999888766666543321 1111 00 000001223334445566
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----c----------cCc-chhHHHH
Q 044122 372 VSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVT----R----------TDY-RNLWLVI 436 (492)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~----~----------~~~-~~~~~~~ 436 (492)
..+....+...+++|.+|+++||++.++.+....+|..+++.++..+....... . ... .+....+
T Consensus 128 ~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~ 207 (502)
T TIGR00887 128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILI 207 (502)
T ss_pred HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHH
Confidence 667667777889999999999999999999999999999999988776533210 0 000 1233455
Q ss_pred HHHHHHHHHHHHHHhhcCCCC
Q 044122 437 LIRNVLRFATLGLIFLVPKGN 457 (492)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~ 457 (492)
.+.++..++..++.+++||..
T Consensus 208 ~~~~ip~~i~~~~~~~lpESp 228 (502)
T TIGR00887 208 GFGAVPALLALYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHHHHHHHhCCCCH
Confidence 555555566666666888863
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=101.09 Aligned_cols=138 Identities=14% Similarity=0.052 Sum_probs=100.6
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcC-CchH
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLG-KLPI 136 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~-~~~~ 136 (492)
......|.|++..+|.++.+.++......++... .+++|+++||+ +||+.+..+.++..+..+++.+.+ +.+.
T Consensus 279 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (471)
T PRK10504 279 MLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-----GYRRVLVATTLGLALVSLLFMLVALLGWY 353 (471)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHHHHHHHHhccccccH
Confidence 3344567777766899999999888777776655 79999999996 677778777777776666555543 2222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCCh
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGH 203 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw 203 (492)
.......++.+++.+...+..+.+..+..++ ++++..+++.+....+|..+|+.++|.+.+..|+
T Consensus 354 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 354 YLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD--NLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--HhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2223334556677777666777777776643 5689999999999999999999999998876665
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-08 Score=99.45 Aligned_cols=124 Identities=14% Similarity=0.084 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
.|+++.+.+++.+...++..++.+..|++.||+++|+.+..+.++..+..+.. .+.. .. ..+.........+.+
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~----~~-~~~~~~l~~~~~l~g 129 (438)
T TIGR00712 56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLM-GFVP----WA-TSSIAIMFVLLFLNG 129 (438)
T ss_pred cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHH-hccc----cc-cchHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999998877765555432221 1110 00 011112222233444
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
+..+....+....+.+..|+++||+++|+.++..++|..+++.+.+.+.+
T Consensus 130 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~ 179 (438)
T TIGR00712 130 WFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA 179 (438)
T ss_pred HHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 44455556667778899999999999999999999999999888776554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-08 Score=98.49 Aligned_cols=125 Identities=10% Similarity=0.090 Sum_probs=92.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+++|.++.+.++..+...++..++.++.|++.||+|+|+.+..+.+...+..+.. ... ++....+....+
T Consensus 31 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~-~~~---------~~~~~~~~~~~l 100 (392)
T PRK10473 31 ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC-SLA---------ETSSLFLAGRFL 100 (392)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH-HHh---------CcHHHHHHHHHH
Confidence 3378999999999999999999999999999999999998887766555432221 111 111222222234
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
.+...+........++.+..|+++|++..++.+...+++..++|.+++.+.+..+
T Consensus 101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g 155 (392)
T PRK10473 101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP 155 (392)
T ss_pred HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4444455555667788999999999999999999999999999999998877544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-08 Score=98.07 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
+|+++.+.|++.+...+...+..++.|++.||+++|+.+..+..+..+..+.. .+. ++.+..+....+.+
T Consensus 41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~-~~~---------~~~~~l~~~~~l~g 110 (400)
T PRK11646 41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM-AIA---------HEPWLLWLSCILSG 110 (400)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH-HHh---------ccHHHHHHHHHHHH
Confidence 79999999999999888888889999999999999999888777666543321 111 12222222333444
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
+..+...++..+++.+.+|++++++++|+.....++|..+||.++|++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~ 160 (400)
T PRK11646 111 LGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ 160 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667788999999999999999999999999999999999983
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-09 Score=97.99 Aligned_cols=169 Identities=16% Similarity=0.111 Sum_probs=111.0
Q ss_pred hHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHH
Q 044122 45 IVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLV 123 (492)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~ 123 (492)
+.+.|....|--. -++..+|.|+++++|.++.+.|.+...+.+...+ .|.+|+++||++ +|| ++......+.+
T Consensus 223 lsllY~~tFG~Fv-gfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~G----g~r-v~~~~f~~~~~ 296 (417)
T COG2223 223 LSLLYFATFGGFV-GFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIG----GRR-VTLAVFVGMAL 296 (417)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhcc----chh-HHHHHHHHHHH
Confidence 4445533333322 2345778999999999999999888888776555 999999999972 444 45455555555
Q ss_pred HHHHHHhcCCc-----hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhh
Q 044122 124 SALIVALLGKL-----PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFV 198 (492)
Q Consensus 124 ~~~~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~ 198 (492)
+..+....++. +...++...+...+..+...-....+++.+.+ ++.|.+.++......+|...-|..-+...
T Consensus 297 ~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~---~~~G~v~G~vga~G~lGGf~lp~~~g~~~ 373 (417)
T COG2223 297 AAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP---KETGAVTGIVGAIGGLGGFFLPLAFGVSL 373 (417)
T ss_pred HHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH---hhhhHHHHHHHHhccccccchhHHHHHHH
Confidence 55555554311 12222222333333333333345556666553 35788899888899999888888888888
Q ss_pred hcCC-hHHHHHHHhHhHHHHHHhhh
Q 044122 199 HHLG-HQGALGILAIPPTLLIVLGF 222 (492)
Q Consensus 199 ~~~g-w~~~f~i~~~~~~~~~~~~~ 222 (492)
+..| ++..|++...+.+++.+..+
T Consensus 374 ~~tg~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 374 DLTGSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHH
Confidence 8777 88999988888877755443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-08 Score=99.83 Aligned_cols=139 Identities=9% Similarity=0.013 Sum_probs=93.9
Q ss_pred hhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 044122 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALA 139 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (492)
...+|.++++ .|.++.+.+.+.++..++..+ ++++|+++||+ +||+.+..+.++..+..+.....++......
T Consensus 251 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (426)
T PRK12307 251 FGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-----GLKKTFSIGLLMSFLFIFPLFRIPQDNYLLL 324 (426)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence 3456778777 799999999888888777666 89999999996 5677777777666655544443332222111
Q ss_pred HHHHHHHHHHH--HHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 140 LTCLIGITGGM--AIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 140 ~~~~~l~~~g~--~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
...+.+++. .......+.++.|..++ +.|++.+++.+....+|..++|.+.|++.++.|+....++
T Consensus 325 --~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 325 --GACLFGLMATNVGVGGLVPKFLYDYFPL--EVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF 392 (426)
T ss_pred --HHHHHHHHHhcccHhHHHHHHHHHhCcH--HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 111222211 11122344556677643 5689999999999999999999999999999987654333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-08 Score=95.30 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=112.5
Q ss_pred CCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 290 GPAFSQEF-VGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 290 ~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
++|+++.+ .|.+......+..+..+..|++.||+|.|+.+.++.+...+..++..+ .. ....+...-++
T Consensus 55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f-a~---------Sl~~L~i~R~l 124 (511)
T TIGR00806 55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL-GT---------SVWHMQLMEVF 124 (511)
T ss_pred HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH
Confidence 48999999 999999999999999999999999999999999887776654333221 11 11122223345
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLG 448 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (492)
.++..+... +...++.+.+|+++|+++.|+.++...+|..+++.++++ ...+|. ..+..+..+......++++
T Consensus 125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gW-----r~y~~Ln~Isl~s~~~a~~ 197 (511)
T TIGR00806 125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGW-----ISYSTLNIISLVFMTFSVF 197 (511)
T ss_pred HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCc-----hhHHHHHHHHHHHHHHHHH
Confidence 555555555 777888999999999999999999999999999999999 444443 3333355555566667777
Q ss_pred HHhhcCCCCc
Q 044122 449 LIFLVPKGNH 458 (492)
Q Consensus 449 ~~~~~~~~~~ 458 (492)
+.+++|..++
T Consensus 198 ~a~~LP~~~~ 207 (511)
T TIGR00806 198 LALFLKRPKR 207 (511)
T ss_pred HHHhCCCCch
Confidence 7778885544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.3e-09 Score=103.27 Aligned_cols=123 Identities=14% Similarity=0.059 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKD-YPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
+|+++.+.+.+.+...++..++.++.|++.|| +|+|+.+..+.++..+..+.. .+. ++....+....+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~-~~~---------~~~~~~~~~~~l~ 112 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML-AMS---------IYPDLIFYGLGTI 112 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH-Hhc---------ccHhHHHHHHHHH
Confidence 78999999999999999999999999999999 799999988877666543221 111 1111111122233
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRG---IEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
+...+...+....+.++..|++ +|++++++.....++|..+||.++|++.++.|
T Consensus 113 g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 113 AVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred HhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444455566778888765 38889999999999999999999999998765
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-08 Score=96.70 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=90.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|+|+.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..+..+.. .+... +....+....+.
T Consensus 31 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~-~~~~~--------~~~~~~~~~~~~ 101 (366)
T TIGR00886 31 DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA-GLAVQ--------SYSVLLLLRLFI 101 (366)
T ss_pred HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHhh--------hHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999888876666543321 11110 111222222233
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLL 422 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~ 422 (492)
+...+ ...+...++.+..|+++|++..++.....++|..+++.+++.+.+..
T Consensus 102 g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~ 153 (366)
T TIGR00886 102 GIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL 153 (366)
T ss_pred HHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33322 34455677899999999999999999999999999999988887654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.3e-09 Score=104.61 Aligned_cols=125 Identities=13% Similarity=0.100 Sum_probs=97.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+.++..+..+.. .. .++....+....+.
T Consensus 31 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~-------~~~~~~l~~~~~~~ 100 (485)
T TIGR00711 31 DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC---GV-------APNLELMIIFRVIQ 100 (485)
T ss_pred hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH---hC-------cCCHHHHHHHHHHH
Confidence 378899999999999999999999999999999999999888766665433221 10 12222333334455
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
++..+...+....++.+.+|+++|+++++++.....+|..++|.++|++.++.++
T Consensus 101 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 155 (485)
T TIGR00711 101 GFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHW 155 (485)
T ss_pred HhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCc
Confidence 5555666666778889999999999999999999999999999999999887654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-08 Score=94.92 Aligned_cols=149 Identities=11% Similarity=-0.010 Sum_probs=97.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|.|+.+.|++.+...++..++.+..|++.||+|+|+.+..... ....... .... .++....+..-.+.
T Consensus 20 ~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~-~~~~~~~--~~~~-------~~~~~~l~~~R~l~ 89 (368)
T TIGR00903 20 DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLA-TFAAAAG--RLLD-------PFNYEWLLACQLLA 89 (368)
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHH--HHHH-------hccHHHHHHHHHHH
Confidence 478999999999999999999999999999999998776544322 2221111 0111 01222222233333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHH-HHH
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFA-TLG 448 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~ 448 (492)
+...+. ..+.....++..|+++|++++++.+....+|..+++.+++++.++.|++ . .+.+.+++.++ .++
T Consensus 90 G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr-----~---~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 90 ALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQ-----L---LIIPIAAVAAAGIIL 160 (368)
T ss_pred HhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-----H---HHHHHHHHHHHHHHH
Confidence 433333 3444555688999999999999999999999999999999998866533 2 44443443333 333
Q ss_pred HHhhcCCCC
Q 044122 449 LIFLVPKGN 457 (492)
Q Consensus 449 ~~~~~~~~~ 457 (492)
..+.+||.+
T Consensus 161 ~~~~lp~~p 169 (368)
T TIGR00903 161 VLAALPALP 169 (368)
T ss_pred HHHHcCCCC
Confidence 444677654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.3e-08 Score=96.12 Aligned_cols=125 Identities=12% Similarity=0.115 Sum_probs=88.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+++|.|+.+.+++.+...++..++.++.|++.||+|+|+.+..+.....+..+.. ... ++....+....+
T Consensus 36 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~~~---------~~~~~l~~~~~~ 105 (394)
T PRK11652 36 RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVA-LFA---------HSLTVLIAASAI 105 (394)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH-HHH---------ccHHHHHHHHHH
Confidence 3479999999999999999999999999999999999998887766555432221 111 111122222223
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
.++..+........+..+..++++++...+..+....++..++|.+++.+.+..|
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 160 (394)
T PRK11652 106 QGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG 160 (394)
T ss_pred HHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3333333333334456777888899999999998889999999999999887654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.7e-08 Score=94.31 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=105.2
Q ss_pred hHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 044122 62 VVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALAL 140 (492)
Q Consensus 62 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (492)
...+++++| .|.+..++|.+.+...+.... +++.|++.||+ ++|+.+..+.+...++.++.+..++.+ ..+
T Consensus 226 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~ 297 (382)
T PRK11128 226 GFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-----SARDLLLLSAICGVVRWGLMGSTTALP--WLI 297 (382)
T ss_pred HHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHhhhhHH--HHH
Confidence 455777765 899999999988877666555 78999999996 677788888888887777777666533 344
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHH-HHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH
Q 044122 141 TCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCA-FCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL 217 (492)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~ 217 (492)
...++.+++.+...+....+..+.. ++++++.++..+ ....+|..+|+.++|.+.+++|+ ..++..+++.++.
T Consensus 298 ~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 298 VIQILHCGTFTVCHLAAMRYIAARP---GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 5567778877777666666655542 334577888775 55678889999999999999998 4666655555443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.6e-08 Score=95.57 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=90.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+++|.++.+.+++.+...++..++.++.|++.||+++|+.+..+..+..+..+.. .+. ++.+..+....+
T Consensus 34 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~---------~~~~~l~~~~~l 103 (401)
T PRK11043 34 ADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM-LWV---------ESAAQLLVLRFV 103 (401)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHH-HHh---------cCHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999887765555432221 111 111122222223
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
.+...+........++.+..|+++++...+..+....++..++|.+++.+.++.|
T Consensus 104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 158 (401)
T PRK11043 104 QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG 158 (401)
T ss_pred HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333333344445677888999989999999998899999999999999988765
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.6e-08 Score=95.77 Aligned_cols=150 Identities=10% Similarity=0.108 Sum_probs=101.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
+++.+..+.+...++..++..++.++.|++.||+|+|+.+..+..+..+..+.. .+. ++....+..-.+.
T Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~-~~a---------~~~~~l~~~r~l~ 114 (413)
T PRK15403 45 DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT-LFT---------TSMTQFLIARFIQ 114 (413)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH-HHc---------CCHHHHHHHHHHH
Confidence 378899999999899999999999999999999999998888766555432221 111 1212222222333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHH
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGL 449 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (492)
++..+...........+..|++++++.+++.+....++..+||.+++.+.++.|+. ..+.+..+..++..+.
T Consensus 115 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~--------~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 115 GTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK--------VLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHHHHHHH
Confidence 33333323333456678889999999999999999999999999999998865532 2344444444444443
Q ss_pred -HhhcCCCC
Q 044122 450 -IFLVPKGN 457 (492)
Q Consensus 450 -~~~~~~~~ 457 (492)
.+.+||++
T Consensus 187 ~~~~lp~~~ 195 (413)
T PRK15403 187 LLLAMPETV 195 (413)
T ss_pred HHHhCCCCc
Confidence 34577754
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.2e-08 Score=98.54 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=96.8
Q ss_pred hhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 044122 64 TDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTC 142 (492)
Q Consensus 64 ~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (492)
.+.+.++.++ +..+.+++.++..++..+ .+++|+++||+ +||+.+..+.++..++.+...+.++ .....+..
T Consensus 245 ~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 317 (437)
T TIGR00792 245 QVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-----GRKILFAGGILLMVLGYLIFFFAGS-NLPLILVL 317 (437)
T ss_pred hheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHcch-hHHHHHHH
Confidence 3445555455 566777777777676666 89999999996 6777888888777777666665542 22233445
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccccc-----cCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCCh
Q 044122 143 LIGITGGMAIADVVIDACIARNSIET-----RALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGH 203 (492)
Q Consensus 143 ~~l~~~g~~~~~~~~~a~~~~~~~~~-----~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw 203 (492)
.++.+++.+...+...++++|..+.+ ++++|...++.+....+|..+++.+.|++.+..|+
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 318 IILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56677787777777888888776421 34578899999999999999999999999887766
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-08 Score=98.81 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=92.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|.+..+.+++.....++..+..+..|++.||+|+|+.+..+..+..+..+.. .+ .++....+..-.+.
T Consensus 35 ~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~-~~---------a~~~~~li~~r~l~ 104 (495)
T PRK14995 35 TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA-AF---------SPTASWLIATRALL 104 (495)
T ss_pred HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HH---------cCCHHHHHHHHHHH
Confidence 378899999999999999999999999999999999999988877666543321 11 11222233333344
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 370 HIVSRLRWIPMIVLSTRL-CPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
++..+.........+.+. .|+++|++++|++.....+|..+||.++|++.++.|+
T Consensus 105 G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw 160 (495)
T PRK14995 105 AIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW 160 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence 444444444444455454 4779999999999999999999999999999987653
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.5e-09 Score=94.33 Aligned_cols=117 Identities=10% Similarity=0.108 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhh-hHHHH
Q 044122 292 AFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITE-QCVSH 370 (492)
Q Consensus 292 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 370 (492)
+-+....|++.+...+..++.++.+|.++||+|||.++.++.+...+..+ .+. .+..+..+.. =.+.+
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~l---l~~--------~S~~F~afv~aR~l~G 132 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYL---LWA--------LSRNFAAFVLARFLGG 132 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHH---HHH--------HHHHHHHHHHHHHhhh
Confidence 34556678888999999999999999999999999999887665554221 111 1111111111 11222
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
..-....+..++++|++++++|+.+++.+.+..++|..+||.++|++.+
T Consensus 133 -i~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 133 -IFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -hccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 1222345677899999999999999999999999999999999999998
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=93.36 Aligned_cols=147 Identities=11% Similarity=0.012 Sum_probs=100.1
Q ss_pred HhhHHhhhhc---CcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHH
Q 044122 63 VTDYYWKDVQ---KVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIAL 138 (492)
Q Consensus 63 ~~~~~~~~~~---g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (492)
..+.|+++.+ +.+..+.|.+.++..+...+ .+..|++.||+ +||+.+.++.++..+...+....++...
T Consensus 237 ~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-----g~~~~l~~~~~l~~l~~~~~~~~~~~~~-- 309 (396)
T TIGR00882 237 QFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-----GAKNALLIAGTIMSVRIIGSSFATTALE-- 309 (396)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHHHhcCChHH--
Confidence 3456666544 55667788888877776555 88899999996 6777788888777777666666665443
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHH-HHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSL-CAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL 217 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~ 217 (492)
++...++.+++..........+..+..+ ++.++...+. .+....+|..+++.++|++.+..||+..|.+.+++.++.
T Consensus 310 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~ 387 (396)
T TIGR00882 310 VVILKMLHAFEVPFLLVGCFKYITSQFD--VRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF 387 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--cceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3344556666654433223233333332 2334444544 557889999999999999999999999999988887766
Q ss_pred H
Q 044122 218 I 218 (492)
Q Consensus 218 ~ 218 (492)
.
T Consensus 388 ~ 388 (396)
T TIGR00882 388 T 388 (396)
T ss_pred H
Confidence 3
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-08 Score=98.63 Aligned_cols=158 Identities=14% Similarity=0.034 Sum_probs=95.2
Q ss_pred hHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccc-cCCCC-chhHHHHHHHHHHHHHHHHHhcCCchHHH
Q 044122 62 VVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFP-IKGYH-RRPYFVIAGVLGLVSALIVALLGKLPIAL 138 (492)
Q Consensus 62 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~-~~g~~-Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (492)
..+|.++.+++|.+..+.+.+.++..+...+ ++++|+++||+. +.+.+ |+..+....++..+..++....++.. .
T Consensus 273 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~--~ 350 (476)
T PLN00028 273 NIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLG--A 350 (476)
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHH--H
Confidence 3467777777899999999998888887666 999999999983 22211 23333333333333333334344322 2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHH
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLI 218 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~ 218 (492)
.+...++.+++.........++..+.. ++.++...++.+.+..+|..+++.+.+ ..+..+|+..|++.+++.++..
T Consensus 351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~ 426 (476)
T PLN00028 351 AIVVMILFSIFVQAACGATFGIVPFVS---RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACT 426 (476)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCcccC---hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHH
Confidence 223333444444433333444445543 346888888776766666666665433 1234569999999887777765
Q ss_pred Hhhheee
Q 044122 219 VLGFVIY 225 (492)
Q Consensus 219 ~~~~~~~ 225 (492)
+..++++
T Consensus 427 ~~~~~~~ 433 (476)
T PLN00028 427 LPVAFIH 433 (476)
T ss_pred HHHHhee
Confidence 5555554
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.3e-08 Score=97.64 Aligned_cols=166 Identities=14% Similarity=0.138 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCC---cchhhhhhH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPD---SFFVITEQC 367 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 367 (492)
++.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..+..+... +..........++ ....+..-.
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~R~ 128 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSA-WPEFGFTSIGPDNTGYVPEFVIYRI 128 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-hhccccccccccchhHHHHHHHHHH
Confidence 588899999999999999999999999999999999999888776654332211 1000000000011 112223334
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHH
Q 044122 368 VSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATL 447 (492)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 447 (492)
+.++..+...++...+++|..|+++||+++++.+....+|..+++.+++.+....+.......+....+.+..+..++..
T Consensus 129 l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~ 208 (479)
T PRK10077 129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL 208 (479)
T ss_pred HHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH
Confidence 55666666777778889999999999999999999889999888877766553211100011122334445555554445
Q ss_pred HHHhhcCCCC
Q 044122 448 GLIFLVPKGN 457 (492)
Q Consensus 448 ~~~~~~~~~~ 457 (492)
+..+++||..
T Consensus 209 ~~~~~l~~s~ 218 (479)
T PRK10077 209 MLLYFVPETP 218 (479)
T ss_pred HHHHcCCCCc
Confidence 5556778754
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-08 Score=98.27 Aligned_cols=125 Identities=14% Similarity=0.069 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDY-PYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
+|+++.+.+.+.........++.+++|++.||+ |+|+.+.++.++..+..+. +.... .......++. .+.
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~ll-l~~~~-------~~~~~~~l~l-~li 110 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVV-LGASE-------IHPSFLYLSL-AII 110 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHH-HHHhh-------cchhHHHHHH-HHH
Confidence 799999999998888888899999999999999 9999988887766654321 11100 0001111111 111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRG--IEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
....+.......+++.|..|++ +|.+++++.....++|..++|.+.|++.+..|+
T Consensus 111 ~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw 167 (493)
T PRK15462 111 VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW 167 (493)
T ss_pred HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh
Confidence 1222333344556788999875 789999999999999999999999999887653
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=93.15 Aligned_cols=125 Identities=10% Similarity=0.017 Sum_probs=95.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|.++.+.|++.+...++..++++..+++.||+|+|+.+..+..+..+..+....... .++....+....+.
T Consensus 32 ~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-------~~~~~~~l~~~~l~ 104 (410)
T TIGR00885 32 AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-------IMNYTLFLVGLFIL 104 (410)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-------hccHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999887776654332111100 11222233333455
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
+...+....+...++.+..|++++++..++.+...++|..+++.+++.+...
T Consensus 105 G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 105 TAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555666666677788889999999999999999999999999999988753
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.4e-08 Score=95.31 Aligned_cols=139 Identities=16% Similarity=0.126 Sum_probs=86.5
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHH-HH-HhcCCch
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSAL-IV-ALLGKLP 135 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~-~~-~~~~~~~ 135 (492)
......|.|+++.+|.+..+.++......++..+ .+++|+++||+ +||+.++.+.++..+... .. ....+..
T Consensus 256 ~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (434)
T PRK15075 256 LITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-----GRRPVLIAFTVLAILTAYPALSWLVAAPS 330 (434)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4455678888887899999988887777776655 89999999997 556665554433322211 11 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHH-HHHHHHHHHHHhHhHhhhcCChH
Q 044122 136 IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAF-CSGAGSLIGYSSSGFFVHHLGHQ 204 (492)
Q Consensus 136 ~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~lg~~l~~~l~~~~gw~ 204 (492)
........++.+++.+...+....+..|..+ ++.|++..++.+. +..++..++|.+.+++.++.|++
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p--~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 331 FARMLAVELWLSFLYGSYNGAMVVALTEVMP--AEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCC--CCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 2112222233344555444445566777774 3568888887543 44445677999999999988854
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.6e-08 Score=93.52 Aligned_cols=148 Identities=16% Similarity=0.022 Sum_probs=98.6
Q ss_pred HhhHHhhhhcCcChHHHHHHHHHhhh-hhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHh-cC---CchH
Q 044122 63 VTDYYWKDVQKVQPSTVQIYIGLYYL-PWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVAL-LG---KLPI 136 (492)
Q Consensus 63 ~~~~~~~~~~g~s~~~~g~~~s~~~l-~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~-~~---~~~~ 136 (492)
..+++++| .|.+++++|++...... ...+ ..+.|++.||+ ++|+.+..+.++..+..+.... .. ....
T Consensus 230 ~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (390)
T TIGR02718 230 LSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-----GLWRTFILGVGLAGSLALLWFAQAAFWLAPGI 303 (390)
T ss_pred HhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHcccCCcH
Confidence 55778887 89999999998877664 4445 67899999996 6677777666554222222211 11 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHH
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTL 216 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~ 216 (492)
........+.+++.+...+...+...+..++ ++++++.+++.+...++|..+||.++|++.++.|++..|.+.+++.++
T Consensus 304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~ 382 (390)
T TIGR02718 304 AVAWSCSAFGSLITGITSVAIYTAFMRFAGD-GDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVL 382 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 1122222333444455544455554444422 256799999999999999999999999999999999999887776655
Q ss_pred H
Q 044122 217 L 217 (492)
Q Consensus 217 ~ 217 (492)
.
T Consensus 383 a 383 (390)
T TIGR02718 383 A 383 (390)
T ss_pred H
Confidence 4
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-08 Score=98.95 Aligned_cols=153 Identities=12% Similarity=-0.023 Sum_probs=100.1
Q ss_pred chhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCchhhHHHHHHHH
Q 044122 259 VWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKD-YPYRNLLFFAQLLYG 337 (492)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~ 337 (492)
++......+...+.++.....+..|..+. +|+++.+.+++.........+..++.|++.|| +|+|+.+..+.++..
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~---lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQ---LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 44433333333343333333333333333 78999999888777777777777899999999 999999999988777
Q ss_pred HhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHHHHHHHH
Q 044122 338 ISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRG--IEGTFFALLMCIDILGSLISKWGG 415 (492)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg~~i~~~l~ 415 (492)
+..+... +.. ......+....+.+...+...+...+++.+..|++ +++.+++.+....++|..+||.++
T Consensus 93 ~g~~~~~-~~~--------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~ 163 (489)
T PRK10207 93 IGYFMTG-MSL--------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLA 163 (489)
T ss_pred HHHHHHH-Hhc--------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHH
Confidence 6543321 111 00111111222333344444455567888999876 457789999999999999999999
Q ss_pred HHHHHhhc
Q 044122 416 GIVLHLLH 423 (492)
Q Consensus 416 g~l~~~~g 423 (492)
|++.++.|
T Consensus 164 g~l~~~~g 171 (489)
T PRK10207 164 PVIADKFG 171 (489)
T ss_pred HHHHHhhC
Confidence 99999765
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-07 Score=90.40 Aligned_cols=124 Identities=14% Similarity=0.125 Sum_probs=88.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|+|..+.+++.++..++..+..+..|++.||+|.|+.+.++.++..+..+. ..+..+ + ..++....+....+.
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~-~~~a~~-~---~~~s~~~lli~r~l~ 138 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVW-LGIAVQ-N---PNTPFGIFIVIALLC 138 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-HHHHHc-c---cCCCHHHHHHHHHHH
Confidence 48999999999999888888899889999999999999988877665543221 111100 0 012222333333344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVL 419 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~ 419 (492)
++. +..+.+....+++..|+++||+++|+.....++|..+++.+.+.+.
T Consensus 139 Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 139 GFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 443 5567777888899999999999999998888888888777776644
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-07 Score=92.90 Aligned_cols=158 Identities=9% Similarity=0.055 Sum_probs=89.7
Q ss_pred hhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHH-H-hcCCchHH
Q 044122 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIV-A-LLGKLPIA 137 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~-~-~~~~~~~~ 137 (492)
...+|.++++++|.+..+.+...++..+...+ +++.|+++||+ +||+.++.+.++..+..... . ........
T Consensus 263 ~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (432)
T PRK10406 263 TTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-----GRRTSMLCFGSLAALFTVPILSALQNVSSPY 337 (432)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 34578888777899999998887776665555 89999999996 55555555544333322211 1 11111111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHH-HHHHHHHhHhHhhhcCC-hHHHHHHHhHhHH
Q 044122 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGA-GSLIGYSSSGFFVHHLG-HQGALGILAIPPT 215 (492)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~l~~~l~~~~g-w~~~f~i~~~~~~ 215 (492)
..+....+..+..+........+..|..+ ++.|+...++.+...++ .....|.+.+.+ +..| |...++..++..+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~e~fp--~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~ 414 (432)
T PRK10406 338 AAFGLVMCALLIVSFYTSISGILKAEMFP--AQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAV 414 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHH
Confidence 11111222222333333345566788874 36789999987755443 233467777755 4445 5555665555555
Q ss_pred HHHHhhheeee
Q 044122 216 LLIVLGFVIYE 226 (492)
Q Consensus 216 ~~~~~~~~~~e 226 (492)
+..+..+++++
T Consensus 415 i~~~~~~~l~~ 425 (432)
T PRK10406 415 VAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHhhh
Confidence 55444444543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-07 Score=89.66 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=118.9
Q ss_pred cccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHh
Q 044122 52 CQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVAL 130 (492)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~ 130 (492)
.+|+. .+......|.++++|.+..+...+.-+..+...+ ..++|++.||++ .++|+++..+.++..+..+...+
T Consensus 294 ~dg~~--ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g---~k~~~~l~~~l~~~~~i~~~g~~ 368 (477)
T PF11700_consen 294 SDGVN--TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFG---PKTKRTLLISLILWIIIPLYGLF 368 (477)
T ss_pred HHHHH--HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHH
Confidence 44553 3344556677878999999987776666666555 889999999972 23346776666655333222222
Q ss_pred --------cCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC
Q 044122 131 --------LGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG 202 (492)
Q Consensus 131 --------~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g 202 (492)
..+ .+ .+.+..++.|+..+.......++..++.|+ ++.+..+|++....-....+||.+.|.+.+..|
T Consensus 369 G~~~~~~g~~~-~~-~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~--g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 369 GFWPSFFGLKS-PW-EFWVLAVLIGLFMGGIQSASRSLFSRLIPP--GREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HhhhcccCccc-HH-HHHHHHHHHHHHhhhHHHHHHHHHHHhCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 122 22 233345567888888888899999999965 445999999999999999999999999998876
Q ss_pred -hHHHHHHHhHhHHHHHHhhheeeecc
Q 044122 203 -HQGALGILAIPPTLLIVLGFVIYETR 228 (492)
Q Consensus 203 -w~~~f~i~~~~~~~~~~~~~~~~e~~ 228 (492)
-|..+....++.++.+++.+++++++
T Consensus 445 ~~r~g~~~l~~lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 445 SQRYGFLFLLVLFLIGLILLFFVDVEK 471 (477)
T ss_pred CchhHHHHHHHHHHHHHHHHhhccchh
Confidence 78888777677666666666676544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.7e-07 Score=90.76 Aligned_cols=150 Identities=16% Similarity=0.054 Sum_probs=92.8
Q ss_pred hhHHhhhhcCcChHHHHHHHHHhhh-hhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHH---HhcCCchHHH
Q 044122 64 TDYYWKDVQKVQPSTVQIYIGLYYL-PWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIV---ALLGKLPIAL 138 (492)
Q Consensus 64 ~~~~~~~~~g~s~~~~g~~~s~~~l-~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~---~~~~~~~~~~ 138 (492)
.++++.+++|.++.+++++.+.... +..+ .++.|+++||+ +||+.+..+.++..+..+.+ +..++.. +.
T Consensus 232 ~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-----g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~-~~ 305 (402)
T PRK11902 232 STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-----GLYRSLMLFGVLQAVSNLGYWVLAVTPKHL-WT 305 (402)
T ss_pred HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhcCCcH-HH
Confidence 3445666699999999998766543 4555 88999999996 56666655555544443322 3433322 22
Q ss_pred HHHHHH----HHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhH
Q 044122 139 ALTCLI----GITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPP 214 (492)
Q Consensus 139 ~~~~~~----l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~ 214 (492)
+....+ ..+++.+...+....++.+..+ ++..+......++|.++++.++|.+.+++||+..|.+.++++
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~ 379 (402)
T PRK11902 306 MALAIGIENLCGGMGTAAFVALLMALCNRSFS------ATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIA 379 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 222222 3334444444444445444432 223455555667888877779999999999999999988887
Q ss_pred HHHHHhhheee
Q 044122 215 TLLIVLGFVIY 225 (492)
Q Consensus 215 ~~~~~~~~~~~ 225 (492)
++..+..+..+
T Consensus 380 ~~~~~~~~~~~ 390 (402)
T PRK11902 380 LPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHh
Confidence 77644443333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=7e-08 Score=108.10 Aligned_cols=121 Identities=8% Similarity=-0.048 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHH
Q 044122 294 SQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVS 373 (492)
Q Consensus 294 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (492)
+....+++.++..++.+++.+++|++.||+|+|+++..+.++..+..++...... ....+.++...++.++..
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~r~l~G~~~ 117 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY-------LGWFWLAFAVTFLLGAQS 117 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH-------HccHHHHHHHHHHHHHHH
Confidence 3455677788889999999999999999999999988776554443222111111 011223333344555556
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 374 RLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
++..++..+++.+.+|++++++++|+.....++|..+|+.+++++.+.
T Consensus 118 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 118 AIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666667778899999999999999999999999999999999999886
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.7e-08 Score=98.16 Aligned_cols=147 Identities=16% Similarity=0.228 Sum_probs=102.9
Q ss_pred CCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhh
Q 044122 289 AGPAFS---QEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITE 365 (492)
Q Consensus 289 ~~~g~~---~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (492)
++++++ +.+.++..++..++.+++.++.|++.||+|+|+.+..+.++..+..+.. .+ .++....+..
T Consensus 117 ~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~-~~---------~~~~~~~~~~ 186 (505)
T TIGR00898 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLT-AF---------SPNYTVFLVF 186 (505)
T ss_pred EEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH-HH---------cccHHHHHHH
Confidence 447777 8889999999999999999999999999999999888766655433221 11 1222233333
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHH
Q 044122 366 QCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFA 445 (492)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 445 (492)
-.+.++..+........++.|.+|+++|+.+.++......+|..+++.+++.+.++ .. .+.+.++..++
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~w--------r~---~~~~~~i~~~~ 255 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDW--------RW---LQLAVSLPTFL 255 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------HH---HHHHHHHHHHH
Confidence 34555555555666778889999999999999999888888988888887766542 11 33334444444
Q ss_pred HHHHHhhcCCC
Q 044122 446 TLGLIFLVPKG 456 (492)
Q Consensus 446 ~~~~~~~~~~~ 456 (492)
..+..+++||.
T Consensus 256 ~~~~~~~~~es 266 (505)
T TIGR00898 256 FFLLSWFVPES 266 (505)
T ss_pred HHHHHHhcCCC
Confidence 44455667764
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=94.82 Aligned_cols=136 Identities=18% Similarity=0.161 Sum_probs=97.9
Q ss_pred HhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 044122 63 VTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALT 141 (492)
Q Consensus 63 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (492)
..+.+.++.+|.++...++......++..+ .|++++++||+ ++|+.+..+.++..++.+.+.+.+..+.+..+.
T Consensus 250 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-----g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~ 324 (448)
T PRK09848 250 SSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-----GKKNTFLIGALLGTCGYLLFFWVSVWSLPVALV 324 (448)
T ss_pred hheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 456677777887665555444333444555 89999999996 677788888888877777776655434334445
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccccc-----CcccchHHHHHHHHHHHHHHHHHhHhHhhhcCCh
Q 044122 142 CLIGITGGMAIADVVIDACIARNSIETR-----ALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGH 203 (492)
Q Consensus 142 ~~~l~~~g~~~~~~~~~a~~~~~~~~~~-----~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw 203 (492)
..++.++|.+...+...++..|..++++ +++|...+..+....+|..+|+.+.+.+.+..|+
T Consensus 325 ~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 325 ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5667788888888888888888775321 2358888899999999999999999988766554
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.2e-08 Score=97.17 Aligned_cols=160 Identities=9% Similarity=-0.059 Sum_probs=98.2
Q ss_pred hccccc-chhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCchhhH
Q 044122 253 SIKLPQ-VWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKD-YPYRNLLF 330 (492)
Q Consensus 253 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~ 330 (492)
.+++|+ ++......++..+..+........|..+. +|+++.+.+.+............++.|++.|| +|+|+.+.
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~---lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~ 92 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ---LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM 92 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 345654 55555454554444433333333343333 78999888777666555555555789999999 59999988
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHH
Q 044122 331 FAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRG--IEGTFFALLMCIDILGS 408 (492)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg~ 408 (492)
.+.++..+..+. ..+.. ......+....+.+...+...+....+..+..|++ +++.++++++...++|.
T Consensus 93 ~g~~~~~ig~~l-~~~~~--------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~ 163 (500)
T PRK09584 93 LGAIVLAIGYAL-VAWSG--------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGS 163 (500)
T ss_pred HHHHHHHHHHHH-HHHhc--------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHH
Confidence 887666654222 11111 01111112222333444444445556778888754 34567888899999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 044122 409 LISKWGGGIVLHLLHV 424 (492)
Q Consensus 409 ~i~~~l~g~l~~~~g~ 424 (492)
.++|.++|++.++.|+
T Consensus 164 ~~gp~i~g~l~~~~g~ 179 (500)
T PRK09584 164 FFSMLATPWLAAKYGW 179 (500)
T ss_pred HHHHHHHHHHHHhhCH
Confidence 9999999999987663
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-07 Score=90.96 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHH
Q 044122 299 GVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWI 378 (492)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (492)
+.+.++..+|.++|++..+.++||+|||..+.+..+......++...... .+..-.++..-.+.+...+....
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~-------~~~~e~li~GR~i~Gl~~gl~~~ 135 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS-------APSFEMLILGRLIVGLACGLSTG 135 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHhHHHHH
Confidence 44446889999999999999999999998888877666654433221111 11111223333455555566666
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044122 379 PMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGN 457 (492)
Q Consensus 379 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (492)
....++.|..|++.||....+......+|..++..++-. +.+| +...+++.+....+..++.++..+++||..
T Consensus 136 ~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~--~ilG----t~~~W~~l~~~~~i~~~~~l~~l~~~PESP 208 (485)
T KOG0569|consen 136 LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLP--SLLG----TEDLWPYLLAFPLIPALLQLALLPFLPESP 208 (485)
T ss_pred HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccH--HhcC----CCcchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 666788999999999998777666666666666444321 1223 223334566666677777777888888854
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.8e-08 Score=106.67 Aligned_cols=147 Identities=11% Similarity=-0.028 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHH
Q 044122 296 EFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRL 375 (492)
Q Consensus 296 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (492)
...++..++..+..++..+++|++.||+++|+++........+.......... ..+.+.++...++.++..++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-------~~s~~~l~~~~~l~gi~~a~ 124 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-------LNSVPLLFAALFLMGIHSAL 124 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHh
Confidence 45677777888999999999999999999998754322222211111111100 12223344445566666677
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhcCC
Q 044122 376 RWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPK 455 (492)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (492)
..+...+++.+.+|+++++.++|+.++..++|..+||.++|++.+..+.. ..+....++.+++++..+++|+
T Consensus 125 ~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 196 (1140)
T PRK06814 125 FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFV--------ILVALLMGIAVLGWLASLFIPK 196 (1140)
T ss_pred hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccH--------HHHHHHHHHHHHHHHHHhhCCC
Confidence 77777889999999999999999999999999999999999999865531 1333333444444555556665
Q ss_pred CC
Q 044122 456 GN 457 (492)
Q Consensus 456 ~~ 457 (492)
.+
T Consensus 197 ~~ 198 (1140)
T PRK06814 197 TG 198 (1140)
T ss_pred CC
Confidence 54
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-07 Score=87.56 Aligned_cols=158 Identities=11% Similarity=0.034 Sum_probs=96.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CCchhhHH-HHHHHHHhhhhHHHHHHhhhhhcCCCCcchhh
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDY-----PYRNLLFF-AQLLYGISGMLDLIFILRWNLALGIPDSFFVI 363 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (492)
+.|+|.+++|+.... .+...+ .+++|++.||+ |+||.+++ +.+...+. .....+.. .....+...
T Consensus 17 ~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~-~~~l~~~~------~~~~l~~l~ 87 (356)
T TIGR00901 17 SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSL-LLILSFLV------PSTDLPLLA 87 (356)
T ss_pred HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHH-HHHHHcCC------cchhHHHHH
Confidence 379999999988644 333333 78899999997 77786543 33333322 11111111 011222223
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHH
Q 044122 364 TEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLR 443 (492)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 443 (492)
+...+.........++..+++.|.+|+++|+.+.|+.....++|..+++.+++.+.++.+.+...-......+.+.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~ 167 (356)
T TIGR00901 88 GLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLI 167 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHH
Confidence 33334445556666777888999999999999999999999999999999999999887632111011223445555554
Q ss_pred HHHHHHHh-hcCCC
Q 044122 444 FATLGLIF-LVPKG 456 (492)
Q Consensus 444 ~~~~~~~~-~~~~~ 456 (492)
++..+..+ ..||.
T Consensus 168 l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 168 LPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHhccCC
Confidence 44444433 34553
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=77.68 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHH
Q 044122 304 LGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVL 383 (492)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (492)
...++.+++.+..+++.||+++|+.+..+.....+..+.. ... .+.+.......+.+...+........+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~ 75 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF-ALS---------SNITVLIIARFLQGFGAAFALVAGAAL 75 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHH-HHh---------ccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4567788899999999999999998877765555432211 110 122222223344455555555666678
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 384 STRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 384 ~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
..|..|++++++..+..+...++|..+++.+.+.+.+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 115 (141)
T TIGR00880 76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG 115 (141)
T ss_pred HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc
Confidence 8999999999999999999999999999999999987544
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.2e-06 Score=80.14 Aligned_cols=262 Identities=13% Similarity=0.118 Sum_probs=137.9
Q ss_pred HhhhhcCc-----ChHHHHHHHHHhhhhhhh--hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhc--CCchH-
Q 044122 67 YWKDVQKV-----QPSTVQIYIGLYYLPWVM--KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALL--GKLPI- 136 (492)
Q Consensus 67 ~~~~~~g~-----s~~~~g~~~s~~~l~~~~--~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~--~~~~~- 136 (492)
-++|.+.+ +...+.++-+...++..+ .|+.+++++|+ +|++++-.....+....+++++. |+.+.
T Consensus 28 ~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-----~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~ 102 (472)
T TIGR00769 28 DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-----SKEALFYTVISPFLGFFALFAFVIYPLSDLL 102 (472)
T ss_pred hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHhHHHHHHHHHHHHHHHHHHHhcchhhc
Confidence 45777665 346788888888887644 79999999997 55656554444444444443332 11110
Q ss_pred --------------------------HHHHHHHH-HHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHH
Q 044122 137 --------------------------ALALTCLI-GITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLI 189 (492)
Q Consensus 137 --------------------------~~~~~~~~-l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~l 189 (492)
|......+ .--.+.-.......++..|..+. +|..|..+++..+.++|.++
T Consensus 103 ~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~--~qakRfy~l~~~ganlg~i~ 180 (472)
T TIGR00769 103 HPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTI--DEAKRFYALFGLGANVALIF 180 (472)
T ss_pred CCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHH
Confidence 00111111 11223223333556777888744 55678899999999999999
Q ss_pred HHHhHhHhhh-------cC-ChH----HHHHHHhHhHHHHHHhhheeeeccCCCcc----chhhhhHHHHHHHHHHHHHh
Q 044122 190 GYSSSGFFVH-------HL-GHQ----GALGILAIPPTLLIVLGFVIYETRATSHH----FEKKKAIESVIFTMKGMCKS 253 (492)
Q Consensus 190 g~~l~~~l~~-------~~-gw~----~~f~i~~~~~~~~~~~~~~~~e~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 253 (492)
++.+..++.+ .. .|. ..+.+.++...+...+.+++.+....++. +++++.+++-....+.++.+
T Consensus 181 sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i 260 (472)
T TIGR00769 181 SGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKFL 260 (472)
T ss_pred HHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHHHHHHHH
Confidence 9988888763 11 232 23344444444433333333221111110 00000000111223567778
Q ss_pred cccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHccCCCchhh
Q 044122 254 IKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQE----FVGVIYALGAVASIIGVLIYHKTLKDYPYRNLL 329 (492)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~ 329 (492)
+++|-++...+...+++........ .|.....+ ..-|+. ..|.+....++.+++..++.+++.+|+|.+...
T Consensus 261 ~~S~yL~~ia~~vi~y~~~~nlve~---~~k~~v~~-~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a 336 (472)
T TIGR00769 261 VSSPYILDLALLVIAYGISINLVEV---TWKSKLKA-QYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAA 336 (472)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8889887776666555432111110 11111000 111222 234444455566666666669999999998877
Q ss_pred HHHHHHHHHh
Q 044122 330 FFAQLLYGIS 339 (492)
Q Consensus 330 ~~~~~~~~~~ 339 (492)
.+.-++..+.
T Consensus 337 ~i~Pii~lit 346 (472)
T TIGR00769 337 LITPLVMLLT 346 (472)
T ss_pred HHHHHHHHHH
Confidence 7666555543
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.2e-06 Score=80.48 Aligned_cols=317 Identities=10% Similarity=-0.032 Sum_probs=159.3
Q ss_pred HHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 044122 84 GLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIA 162 (492)
Q Consensus 84 s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~ 162 (492)
++.+..+.+ ..+.+.+.|+. +-|..|+++........+.+.+.+ .+ .++....+.|+|.++...-.-.+..
T Consensus 57 aiiY~~ftv~~l~~psiv~~i-----~~K~~lv~ga~~y~~f~~gfl~~N--~y-~~yfssallG~Gaallw~GqG~ylt 128 (461)
T KOG3098|consen 57 AIIYAFFTVSCLFAPSIVNFL-----GPKWALVIGATCYAAFPLGFLFPN--SY-YLYFSSALLGFGAALLWTGQGGYLT 128 (461)
T ss_pred HHHHHHHHHHHHhhHHHHHHh-----hHHHHHHHHhHHHHHHHHHHHhcc--hH-HHHHHHHHhhhhHHheecccceehh
Confidence 333444444 77889999997 568889888888777665554444 22 2455667789999887776667777
Q ss_pred hccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhc--------CChH--------H---HHHHHhHhHHH---HHHh
Q 044122 163 RNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHH--------LGHQ--------G---ALGILAIPPTL---LIVL 220 (492)
Q Consensus 163 ~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~--------~gw~--------~---~f~i~~~~~~~---~~~~ 220 (492)
+..+++ .+.+..++.+.....+.++|..+-..+..+ .+-+ . ...+.+++... .++.
T Consensus 129 ~~st~~--tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~ 206 (461)
T KOG3098|consen 129 SNSTRE--TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIIN 206 (461)
T ss_pred hcCChh--hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 776543 445556766677777777775544332211 1111 0 11111111111 1122
Q ss_pred hheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHH-HH
Q 044122 221 GFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEF-VG 299 (492)
Q Consensus 221 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g 299 (492)
..+.|.+......+ .. +....+..+...+.+++|++.......+..+..........+...... ...+.+... .+
T Consensus 207 ~~~~p~~~~~~~~~--~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft-~~~~~n~~~~~a 282 (461)
T KOG3098|consen 207 FDFLPSKDVVNCKS--SS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFT-RKLGSNTTYLIA 282 (461)
T ss_pred eeecCccchhhhhh--hc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhh-hhccCcchhHHH
Confidence 22233211111111 11 134556667778888888887665544443321111101100000000 013333333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcc---CCCchhhHHHHHHHHHhhhhHHHHHHhhhh--------hcCCCCcchhhhhhHH
Q 044122 300 VIYALGAVASIIGVLIYHKTLKD---YPYRNLLFFAQLLYGISGMLDLIFILRWNL--------ALGIPDSFFVITEQCV 368 (492)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~r---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 368 (492)
......+++.+++....+.+.|| +|+++...++..+..+..++...-.+.... ....+.....+....+
T Consensus 283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l 362 (461)
T KOG3098|consen 283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL 362 (461)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence 44456677788877777776654 677777777766555433321111110000 0000112233333344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGG 415 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~ 415 (492)
.+.............+.... ++++..+++++-.-..++..++-...
T Consensus 363 ~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 363 LGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 44444444444455566666 46666776666665555555544433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.1e-08 Score=101.34 Aligned_cols=169 Identities=13% Similarity=0.112 Sum_probs=113.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhh-h-cC----------
Q 044122 288 KAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNL-A-LG---------- 355 (492)
Q Consensus 288 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~---------- 355 (492)
.++++++..+.|++.+...++..++.++.+++.||.++|+.+.++.++.+++.++.. +.+.... + ..
T Consensus 60 ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a-lphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 60 ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS-LPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh-ChHHhcCCcccccccccccccc
Confidence 345899999999999999999999999999999999999999888777776544321 1110000 0 00
Q ss_pred ---------------------------C--C-CcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 044122 356 ---------------------------I--P-DSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDI 405 (492)
Q Consensus 356 ---------------------------~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 405 (492)
. . ...+.+...++.++..+........++.|.+|+++++.+.|+++....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 0 0 011222333444444444445556788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc-c----------ccc--Ccch-hHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044122 406 LGSLISKWGGGIVLHLLH-V----------TRT--DYRN-LWLVILIRNVLRFATLGLIFLVPKGN 457 (492)
Q Consensus 406 lg~~i~~~l~g~l~~~~g-~----------~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (492)
+|..+|+.+++++.+.+. + +.. .+.+ +|..+++.+++.++..+.++.+|++.
T Consensus 219 iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~l 284 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKAL 284 (633)
T ss_pred hhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 999999999999987642 1 111 1222 34456666666655555556666653
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.9e-07 Score=89.85 Aligned_cols=167 Identities=11% Similarity=0.097 Sum_probs=107.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCC----CC-c--
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLK----DYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGI----PD-S-- 359 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~-- 359 (492)
+|.+....+.+..+..+..++..++.|+++| |+|||+.++.......+..+..+.+........+- .. .
T Consensus 34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~ 113 (477)
T TIGR01301 34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA 113 (477)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence 7899999999999999999999999999999 59999998876444443333222221110000000 00 0
Q ss_pred -chhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcccccCc-----
Q 044122 360 -FFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIE--GTFFALLMCIDILGSLISKWGGGIV--LHLLHVTRTDY----- 429 (492)
Q Consensus 360 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~lg~~i~~~l~g~l--~~~~g~~~~~~----- 429 (492)
+..+....+..+.......|..+++.|.+|+++| +.+++..+...++|+.+|+.+++.. .+.++......
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~ 193 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC 193 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence 1122222344456667778889999999998755 6789999999999999999999976 34333321110
Q ss_pred chhHHHHHHHHHHHHHHHHHH-hhcCCCC
Q 044122 430 RNLWLVILIRNVLRFATLGLI-FLVPKGN 457 (492)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 457 (492)
.++...+.+.+++.+++.... +..+|..
T Consensus 194 ~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 194 ANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 133446666666555555444 3566643
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=87.42 Aligned_cols=150 Identities=13% Similarity=0.215 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
++-+++++|++++..++..++..++.|.+.||+|+|..++++...+....++ +.. + ......+..-.+.+
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTil---Faf------g-~sy~~l~vAR~LQg 170 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTIL---FAF------G-NSYPMLFVARSLQG 170 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHH---HHH------c-chhHHHHHHHHHhh
Confidence 5667889999999999999999999999999999999998887766654332 111 0 11123333334566
Q ss_pred HHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHH
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGI-EGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGL 449 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (492)
....+......+++++.+|++. ||+++|..-....+|..+||.++|.++|..|...+ |+++++..++-..+
T Consensus 171 vgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP--------FlVL~~v~Lld~~L 242 (464)
T KOG3764|consen 171 VGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP--------FLVLAIVLLLDGAL 242 (464)
T ss_pred hhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCc--------HHHHHHHHHHHHHH
Confidence 6667777778889999999865 69999999999999999999999999999987642 44444444444444
Q ss_pred H-hhcCCCCc
Q 044122 450 I-FLVPKGNH 458 (492)
Q Consensus 450 ~-~~~~~~~~ 458 (492)
. +.++.++.
T Consensus 243 ~l~vi~p~~~ 252 (464)
T KOG3764|consen 243 QLLVIEPTEM 252 (464)
T ss_pred HHheeCcccc
Confidence 3 34444333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.2e-07 Score=86.30 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=113.3
Q ss_pred cccchhhhhHhhHHhhhhcC-cChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhc
Q 044122 54 GFSGSFFKVVTDYYWKDVQK-VQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALL 131 (492)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~ 131 (492)
+..........+.|++| .| .+....+.+.++..++=+. -.+.+++..|+ +-|+++.++.+..++=..+++..
T Consensus 220 ~~~~~~~~~f~~~yl~~-~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-----g~~~ll~~a~~~~~vR~~l~a~~ 293 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQE-LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-----GIKWLLLLALVAYAVRWLLYAYF 293 (400)
T ss_pred HHHHHHHHHHHHHHHHH-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555567888887 66 6777777666655554333 44567777775 56888999998888877777777
Q ss_pred CCchHHHH---HHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHH-HHHHHHHHHHhHhHhhhcCChHH--
Q 044122 132 GKLPIALA---LTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFC-SGAGSLIGYSSSGFFVHHLGHQG-- 205 (492)
Q Consensus 132 ~~~~~~~~---~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~-~~~G~~lg~~l~~~l~~~~gw~~-- 205 (492)
++..+... +....+.|+..+........++.+..|+ +.|++.++++... ..+|..+|..++|++.+++|-+.
T Consensus 294 ~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~--~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 294 SDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP--ELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred cCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc--cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 33232211 1123468888888888888888888844 6689999988764 57999999999999999877554
Q ss_pred ----HHHHHhHhHHHH-HHhhheeeec
Q 044122 206 ----ALGILAIPPTLL-IVLGFVIYET 227 (492)
Q Consensus 206 ----~f~i~~~~~~~~-~~~~~~~~e~ 227 (492)
.+.+.++..++. ++.+++.||+
T Consensus 372 ~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 372 DWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 444444444444 3344455543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5e-07 Score=89.06 Aligned_cols=128 Identities=16% Similarity=0.241 Sum_probs=102.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++.+++.+-+++.+....|.+++.+..+++.||+|.|+++..+.++..+..++. .+.. ..+. +..+..-.+.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~-P~aa----~~~~---~~~~~~R~lq 138 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLT-PLAA----SIGF---YLLLVLRFLQ 138 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHH-HHHH----Hhcc---hhhHHHHHHh
Confidence 478899999999999999999999999999999999999998877776543321 1111 1111 1233444566
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHL-LHVT 425 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~-~g~~ 425 (492)
++..+..++....+.++.+|+++|++..++..+..++|..++-.++|++.+. +|++
T Consensus 139 Gl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~ 195 (466)
T KOG2532|consen 139 GLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWP 195 (466)
T ss_pred HHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCc
Confidence 6777777888888889999999999999999999999999999999999998 6654
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.5e-06 Score=78.01 Aligned_cols=309 Identities=15% Similarity=0.115 Sum_probs=161.3
Q ss_pred HHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 044122 82 YIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDAC 160 (492)
Q Consensus 82 ~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~ 160 (492)
+.-+-.+|..+ +..+-++.+|++ |+.|. ....++..++.++.+++++... -+++..+.+++.+......-++
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~---y~~Ri--~~~~~l~~~g~l~va~~~~v~~--~l~Gv~las~ssg~GE~tfL~l 136 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVP---YWIRI--LICVALSAAGMLLVAFSPSVWV--RLLGVVLASLSSGLGEVTFLSL 136 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhcc---chHHH--HHHHHHHHHHHhheeeccchhH--HHHHHHHHhhhhhhhHHHHHHH
Confidence 33344456555 778888899986 55553 3445677778888888876543 4456677788888777766666
Q ss_pred hhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhh-cCChHHHHHHHhHhHHHHHHh-hheeeeccCCCccc--h-
Q 044122 161 IARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVH-HLGHQGALGILAIPPTLLIVL-GFVIYETRATSHHF--E- 235 (492)
Q Consensus 161 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~-~~gw~~~f~i~~~~~~~~~~~-~~~~~e~~~~~~~~--~- 235 (492)
...+. + ...+.+..+...|+++|+..-..+.. ..+.|..+.+...++++..+. ++.+|.++...... +
T Consensus 137 t~~y~-~------~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~ 209 (402)
T PF02487_consen 137 THFYG-K------SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESES 209 (402)
T ss_pred HHhcC-c------cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCC
Confidence 54332 1 12344446677777777766554544 345677887777777665443 44444332211100 0
Q ss_pred ----hhh--------------hHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHH
Q 044122 236 ----KKK--------------AIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEF 297 (492)
Q Consensus 236 ----~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 297 (492)
+++ .+...++.++..+.+++ -+..+.+..+.-.....+..... .+... ..-...+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~--ymiPL~lVY~aEY~InqGv~~tl-~fp~~----~~~~r~~ 282 (402)
T PF02487_consen 210 EDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLW--YMIPLFLVYFAEYFINQGVAPTL-LFPNS----FFSPRDQ 282 (402)
T ss_pred CCcccccccccccccccccccchhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhchHHHh-cCCcc----CCCHHHH
Confidence 000 00111122222222211 11111111111111111111111 11111 1112345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHH
Q 044122 298 VGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRW 377 (492)
Q Consensus 298 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (492)
+.+......+|.+++.--.. -+..|++...+.+ ..+- +..+ +...+- .-+++.+..+...+..+.++|..+
T Consensus 283 Y~~Y~~~YQ~GVFISRSS~~----~~rir~lwils~L-Q~~n-l~~~-~l~s~~--~fipsi~ivf~lif~eGLlGGa~Y 353 (402)
T PF02487_consen 283 YRWYQLLYQLGVFISRSSLP----FFRIRRLWILSLL-QVIN-LVFL-LLQSWY--RFIPSIWIVFVLIFYEGLLGGASY 353 (402)
T ss_pred HHHHHHHHHHHHhhhhccee----eeehhhHHHHHHH-HHHH-HHHH-HHHHHH--HHhhHHHHHHHHHHHHHHhhhHHH
Confidence 66666677776666543222 1223444333322 2221 1111 111111 113455555566667788889988
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 378 IPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 378 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
+.....+.+..|+++|-..+|......++|..++..++-++-.
T Consensus 354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8888888888999999999999888888888887777655433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-07 Score=89.51 Aligned_cols=133 Identities=13% Similarity=-0.008 Sum_probs=96.6
Q ss_pred hhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 044122 61 KVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALA 139 (492)
Q Consensus 61 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (492)
...+|.+++| .|.+..+.+.+.++..++..+ +++.|+++||++ +||+.+..+.++..++.+.+.+.++....
T Consensus 217 ~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 289 (355)
T TIGR00896 217 IGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVK----DQRGIVAVLAVLQLVGLCGLLFAPMHGLW-- 289 (355)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchHHHHHHHHHHHHHHHHHHHhhhhHHH--
Confidence 3456778876 799999999999998888777 999999999962 56667777777777776666665543322
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC
Q 044122 140 LTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG 202 (492)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g 202 (492)
....+.+++.+...+...+.+.+..+ ++++++...++.+....+|..++|.+.|++.++.|
T Consensus 290 -~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 290 -AWALVLGLGQGGAFPLALTLIGLRSR-QAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred -HHHHHHHHhhhhHhHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12345677776666555555544332 23457888888888888999999999999998776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-06 Score=76.74 Aligned_cols=178 Identities=17% Similarity=0.066 Sum_probs=111.4
Q ss_pred cchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhhhhHHhhhccccccCCCCchhHHHHHH
Q 044122 39 SSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVMKPIWGIFTDAFPIKGYHRRPYFVIAG 118 (492)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g~~Rk~~l~~~~ 118 (492)
|..+.+...+. ...|..+.+. ...+.+|+.+|.|.+|...+.+...++..+.++.|.+.|++ +.+..+.+|.
T Consensus 2 W~~l~a~~~v~-~~~Gt~Y~Fs--~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~-----gp~~~l~iG~ 73 (250)
T PF06813_consen 2 WLSLVASIWVQ-LCSGTTYTFS--AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRF-----GPWVVLLIGA 73 (250)
T ss_pred hhhHHHHHHHH-HhcCcccchh--hhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhc-----chHHHHHHHH
Confidence 44444443333 4455555442 44566788899999999999888888877799999999996 5678888999
Q ss_pred HHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHh
Q 044122 119 VLGLVSALIVALLG-----KLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSS 193 (492)
Q Consensus 119 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l 193 (492)
+...++...+...- +.+.+......++.+.+....+...-....+.. |++||.+.++.-....++..+-..+
T Consensus 74 ~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF---P~~RG~vvgilk~~~GLSaai~t~i 150 (250)
T PF06813_consen 74 VLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF---PRSRGTVVGILKGFFGLSAAIFTQI 150 (250)
T ss_pred HHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC---ccccCceehhhhHHHHhHHHHHHHH
Confidence 99888887776532 223344444445555665555444333333443 4568999998877777777665544
Q ss_pred HhHhhhcCChHHHHHHHhHh-HHHHHHhhheeeecc
Q 044122 194 SGFFVHHLGHQGALGILAIP-PTLLIVLGFVIYETR 228 (492)
Q Consensus 194 ~~~l~~~~gw~~~f~i~~~~-~~~~~~~~~~~~e~~ 228 (492)
...+.+.-.-+. +...++. .++.++..+++++.+
T Consensus 151 ~~~~f~~~~~~f-ll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 151 YSAFFGDDPSSF-LLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HHHHcCCChHHH-HHHHHHHHHHHHHHHhhheeccC
Confidence 444444322233 3333443 334455556666544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6e-07 Score=89.04 Aligned_cols=124 Identities=13% Similarity=0.040 Sum_probs=92.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+++|.|+.+.|+......++..++.+..|++.||+|+|+.+..+..+..+..+....... .++....+..-.+
T Consensus 54 ~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-------a~~~~~ll~~r~l 126 (438)
T PRK10133 54 QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------IMNYTLFLVGLFI 126 (438)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHH
Confidence 348999999999999999999999999999999999999999987777765432111110 1222233333445
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVL 419 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~ 419 (492)
.+...+........++.+..|+++++..+++.+....+|..+++.+++.+.
T Consensus 127 ~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 127 IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666777777766666666899999999999999999988765
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.1e-06 Score=86.11 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=112.0
Q ss_pred hhHHhhhhcCcChHHHHHHHHHhhh-hhhhhhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCc------hH
Q 044122 64 TDYYWKDVQKVQPSTVQIYIGLYYL-PWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKL------PI 136 (492)
Q Consensus 64 ~~~~~~~~~g~s~~~~g~~~s~~~l-~~~~~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~------~~ 136 (492)
+..|+.+.+|.+.+++..+...+.. .++...+.|.++|++ +||++.+.++.++..++.+++++.... ..
T Consensus 10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~----lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~ 85 (654)
T TIGR00926 10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGW----LGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD 85 (654)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence 3445556689998888777666554 455577899999997 568888888888888887777664321 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccc-cCcccchHHHHHHHHHHHHHHHHHhHhHhhhc-------CChHHHHH
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIET-RALAPDMQSLCAFCSGAGSLIGYSSSGFFVHH-------LGHQGALG 208 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~-------~gw~~~f~ 208 (492)
...+.+..+.++|.+..-+...++..|..+++ +++|-+...+++.+.++|.++++.+..++.+. .+|...|.
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~ 165 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG 165 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence 22445566777888887788888888876543 34578889999999999999999998888643 36999999
Q ss_pred HHhHhHHHHHH
Q 044122 209 ILAIPPTLLIV 219 (492)
Q Consensus 209 i~~~~~~~~~~ 219 (492)
+.++..++..+
T Consensus 166 i~~i~m~ia~l 176 (654)
T TIGR00926 166 VPAILMILALI 176 (654)
T ss_pred HHHHHHHHHHH
Confidence 88887776643
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.5e-07 Score=83.24 Aligned_cols=155 Identities=16% Similarity=0.078 Sum_probs=115.6
Q ss_pred chhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCch
Q 044122 57 GSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLP 135 (492)
Q Consensus 57 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~ 135 (492)
+...-.-+|.++.| .|+|..+.|+..++..+.... ....-.+.+|.. ++|++.+....++.++.+.+.+.|...
T Consensus 224 ~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~----n~r~~~~~~~~~~l~G~~G~~~~P~~~ 298 (395)
T COG2807 224 YYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSK----NQRPLVVLALLLMLVGLVGLLLAPGQL 298 (395)
T ss_pred HHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33444467888888 899999999999988876554 555666677642 778888888888888888888888655
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcC-ChHHHHHHHhHhH
Q 044122 136 IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHL-GHQGALGILAIPP 214 (492)
Q Consensus 136 ~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~-gw~~~f~i~~~~~ 214 (492)
..+. .++.|+|.+...+....++.+.+++ +++.+++.+..+....+=..+||.+.|++.|.. +|+..........
T Consensus 299 ~~lw---~~llG~G~G~~F~laL~li~~rs~~-a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~ 374 (395)
T COG2807 299 PILW---ALLLGLGQGGAFPLALTLILLRSSD-AAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT 374 (395)
T ss_pred HHHH---HHHHhCccchHHHHHHHHHHhhcCC-hHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence 3322 4677888888888888888887754 456788888666666666777899999999876 5998887776666
Q ss_pred HHHHHh
Q 044122 215 TLLIVL 220 (492)
Q Consensus 215 ~~~~~~ 220 (492)
++..+.
T Consensus 375 i~m~i~ 380 (395)
T COG2807 375 LLMLIF 380 (395)
T ss_pred HHHHHH
Confidence 665433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.9e-07 Score=83.08 Aligned_cols=141 Identities=11% Similarity=0.011 Sum_probs=100.2
Q ss_pred hhHhhHHhhhh--cCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHH
Q 044122 61 KVVTDYYWKDV--QKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIA 137 (492)
Q Consensus 61 ~~~~~~~~~~~--~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (492)
...++.|++|. +|.++.+.+...+.+..++.+ ..+.++++||+ ++|+++.++.++..++.++....++ ...
T Consensus 160 ~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-----g~~~~l~~~~~l~~~~~~l~~~~~~-~~~ 233 (310)
T TIGR01272 160 GSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-----SQGRYLAFNAFLAVLLSIGAALTHG-YVA 233 (310)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHcCC-HHH
Confidence 44567777753 699999999999998888888 88999999997 5566777777777666655554443 211
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHh
Q 044122 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIP 213 (492)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~ 213 (492)
....++.+++.+...+...+...+..+++ .++..++. ....+|..++|++.|.+.|..|.+..|++..+.
T Consensus 234 --~~~~~l~g~~~s~i~P~~~s~a~~~~~~~---~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 234 --MWFVLALGLFNSIMFPTIFSLALNALGRH---TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 22344667888877777777666655432 23344443 566799999999999999999998888755433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.4e-07 Score=90.84 Aligned_cols=144 Identities=17% Similarity=0.257 Sum_probs=107.3
Q ss_pred cccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 044122 54 GFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLG 132 (492)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~ 132 (492)
.+.....+...+++.++.+|.+ ...+.+..+..++..+ .|++++++||+ +||+.+..+.++.+++.+++.+.+
T Consensus 238 ~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-----gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-----GKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-----cceeehhhhHHHHHHHHHHHHHHH
Confidence 3334445556677777767766 5667777777777666 89999999997 677788888988888888887776
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccc-----CcccchHHHHHHHHHHHHHHHHHhHhHhhhcCCh
Q 044122 133 KLPIALALTCLIGITGGMAIADVVIDACIARNSIETR-----ALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGH 203 (492)
Q Consensus 133 ~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~-----~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw 203 (492)
..+.+..++...+.+++.+.......++++|..++++ ++.|...+.......+|..+++.+.+.+.+..|+
T Consensus 312 ~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 312 PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 2233445566778888888888888999998886432 3357778888889999999999988887765543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-06 Score=86.45 Aligned_cols=121 Identities=11% Similarity=0.015 Sum_probs=81.2
Q ss_pred HHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhh
Q 044122 78 TVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVV 156 (492)
Q Consensus 78 ~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 156 (492)
..+.+.....++..+ .+++++++||+ +||+.+..+.++..+..+...+.+....+..++..++.+++.+...+.
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~-----gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~ 339 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKF-----DRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPL 339 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555 78999999996 566677666655554333333333223333445556778888888888
Q ss_pred hhhhhhhcccccc-----CcccchHHHHHHHHHHHHHHHHHhHhHhhhcCCh
Q 044122 157 IDACIARNSIETR-----ALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGH 203 (492)
Q Consensus 157 ~~a~~~~~~~~~~-----~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw 203 (492)
..++++|..+.++ ++.|...+.......+|..+|+.++|.+.+..|+
T Consensus 340 ~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 340 QWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8999988875322 2235567788888899999999999998887665
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=87.56 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=123.5
Q ss_pred hhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchH
Q 044122 58 SFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPI 136 (492)
Q Consensus 58 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~ 136 (492)
......+|.+.++ .|.+..+++.+.++..+...+ .++.|+++|+.+ .+++.+..++.+...++.+.+.+.+++.
T Consensus 315 ~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~---~~~~~~~~~~ll~~gl~~~~~p~~~~~~- 389 (509)
T KOG2504|consen 315 NVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG---IRALVLFLLTLLIAGLARLFLPFATTYV- 389 (509)
T ss_pred HHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc---cchHHHHHHHHHHHHHHHHHHHHhccHH-
Confidence 3444567778775 999999999999999998777 999999999963 2456666777777788887888888653
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC-hHHHHHHHhHhHH
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG-HQGALGILAIPPT 215 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g-w~~~f~i~~~~~~ 215 (492)
.++....+.|+..+.......-.+.|+... ++-..+.|+......++.++||++.|++.+..| |...|+..++..+
T Consensus 390 -~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~--~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~ 466 (509)
T KOG2504|consen 390 -GLIVFSILFGFCVGSFSSLTPVILVDLVGL--EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFL 466 (509)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHcCh--hhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHH
Confidence 344555666666666655555566677643 345778999999999999999999999998877 9999999988888
Q ss_pred HHHHhhheee
Q 044122 216 LLIVLGFVIY 225 (492)
Q Consensus 216 ~~~~~~~~~~ 225 (492)
+..+.++..+
T Consensus 467 ~s~~~~~~~~ 476 (509)
T KOG2504|consen 467 LSAVLLLILR 476 (509)
T ss_pred HHHHHHHHhH
Confidence 8766666666
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-06 Score=84.36 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=112.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
++.++...+.+.+..+..++.+++.+.++.+.||++..+.+....++..+.+++... ..+....++.-.+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~----------~~s~~~~ialr~l 143 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA----------VHSFPGLIALRFL 143 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------HhhhHHHHHHHHH
Confidence 447788889999999999999999999999999999666666555544433222111 1122233444556
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHH-HHHH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLR-FATL 447 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 447 (492)
.+++.+..+++...++.....++++|+.+|++.+..++|+++|+++...+.+.-|.. ...++.+.+++.+++. ..++
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~--~~~gW~~~FiI~G~i~~~~gi 221 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG--GLAGWRWLFIIEGVITLVLGI 221 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC--CcCCceeehhHHHHHHHHHHh
Confidence 677777778888888899999999999999999999999999999988877643321 1122223555555554 4444
Q ss_pred HHHhhcCCCCcccc
Q 044122 448 GLIFLVPKGNHSNE 461 (492)
Q Consensus 448 ~~~~~~~~~~~~~~ 461 (492)
+..+.+|+..++.+
T Consensus 222 ~~f~~lp~~P~~~~ 235 (495)
T KOG2533|consen 222 VVFFFLPDNPSKAW 235 (495)
T ss_pred eEEEEecCChhhcc
Confidence 44558887766543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.5e-06 Score=84.68 Aligned_cols=135 Identities=14% Similarity=0.086 Sum_probs=89.7
Q ss_pred HhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHh---cCCchHHH
Q 044122 63 VTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVAL---LGKLPIAL 138 (492)
Q Consensus 63 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~---~~~~~~~~ 138 (492)
..+.+.+. ..-+....+++.++..++.++ .|++++++||+ +||+.+..+.++..++.+.... .++...+.
T Consensus 253 ~~~y~~~y-~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
T PRK10429 253 FAIYYFTY-VIGDADLFPYYLSYAGAANLVTLILFPRLVKSL-----SRRILWAGASIFPVLSCGVLLLMGLAAPHNALL 326 (473)
T ss_pred heeeEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence 34444444 333556667666665566555 89999999996 6777777777665555444332 22222333
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcccccc-----CcccchHHHHHHHHHHHHHHHHHhHhHhhhcCCh
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETR-----ALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGH 203 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~-----~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw 203 (492)
.++..++.+++.+...+...++++|..+.++ ++.|...+.......+|..+++.+.|++.+..|+
T Consensus 327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444566778888877888889988876332 2234478888888999999999999998876654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.6e-06 Score=74.49 Aligned_cols=150 Identities=13% Similarity=0.127 Sum_probs=96.4
Q ss_pred hHHhhhhcCcChHHHHHHHHHhhh-hhhhhhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 044122 65 DYYWKDVQKVQPSTVQIYIGLYYL-PWVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCL 143 (492)
Q Consensus 65 ~~~~~~~~g~s~~~~g~~~s~~~l-~~~~~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (492)
|.+.++++|+|+...+.+.+.... .....|+.|.++||++ ++-.++..+++.+.++-....++.-.++ ...
T Consensus 288 ~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G----~n~~wv~~a~~~tl~~H~~l~Ft~lsPy----~~m 359 (459)
T KOG4686|consen 288 PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYG----FNLWWVASACILTLLGHSGLFFTFLSPY----TSM 359 (459)
T ss_pred HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhc----ceehhHHHHHHHHHHHhhhHHhhhccHH----HHH
Confidence 556778899999999988776554 4445999999999962 3344555566666666655555432122 123
Q ss_pred HHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC---hHHHHHHH-hHhHHHHHH
Q 044122 144 IGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG---HQGALGIL-AIPPTLLIV 219 (492)
Q Consensus 144 ~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g---w~~~f~i~-~~~~~~~~~ 219 (492)
.+.|+...........+++...+| ++-|++.+..+...++|..+.+.+.|++.++-| |-..|.+. +.+++....
T Consensus 360 ~~lGLsysllAcslWP~va~~vpE--~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svg 437 (459)
T KOG4686|consen 360 TFLGLSYSLLACSLWPCVASLVPE--EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVG 437 (459)
T ss_pred HHHhhhHHHHHHHHhhhhhhhCCH--HHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence 334555444433344455666655 347889999999999999999999999998765 44444443 333333333
Q ss_pred hhhee
Q 044122 220 LGFVI 224 (492)
Q Consensus 220 ~~~~~ 224 (492)
+.+.+
T Consensus 438 il~~~ 442 (459)
T KOG4686|consen 438 ILFYL 442 (459)
T ss_pred HHhhe
Confidence 33333
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.5e-06 Score=85.08 Aligned_cols=124 Identities=14% Similarity=0.080 Sum_probs=79.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+++|+|..+.+.+...+...+ ...++.|++.||+|+|+++.++.++..++.+... +.. .... .++.+..+....+
T Consensus 55 ~~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~a-la~--~~~i-~~s~~~l~l~r~l 129 (591)
T PTZ00207 55 ARYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFA-LTF--QEVI-EGSVVRLSVYNGL 129 (591)
T ss_pred HHhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHh--cccc-cCcHHHHHHHHHH
Confidence 448999999998876543333 4556789999999999999998887776544322 111 0000 1122222223334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIV 418 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l 418 (492)
.+...+...........+.+| ++||++.|+......+|.++.+.+...+
T Consensus 130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555666788887 7889999999999999997644444433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-05 Score=68.17 Aligned_cols=304 Identities=12% Similarity=0.063 Sum_probs=150.3
Q ss_pred hhcCcChHHHHHHHHHhhhh-hhhhhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 044122 70 DVQKVQPSTVQIYIGLYYLP-WVMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITG 148 (492)
Q Consensus 70 ~~~g~s~~~~g~~~s~~~l~-~~~~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (492)
+.+|....++|.+.-...-. ..++.+.|.++|+- +||+--+.-++...+++ +.-.++. +..++++|.+.|+
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-----GRKracvtycitYiLsC-iTKhSpq--YkVLmVGR~LGGi 136 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRACVTYCITYILSC-ITKHSPQ--YKVLMVGRVLGGI 136 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhh-----ccccceeeehHHHHHHH-HhhcCCc--eEEEeehhhhhhH
Confidence 44788888888664333322 34488999999996 45553333333333332 1223343 3346788999999
Q ss_pred HHHHHHhhhhhhh-hhccccccCcccchHHHHH--------HHHHHHHHHHHHhHhHhhhcCC--hHHHHHHHhHhHHHH
Q 044122 149 GMAIADVVIDACI-ARNSIETRALAPDMQSLCA--------FCSGAGSLIGYSSSGFFVHHLG--HQGALGILAIPPTLL 217 (492)
Q Consensus 149 g~~~~~~~~~a~~-~~~~~~~~~~r~~~~~~~~--------~~~~~G~~lg~~l~~~l~~~~g--w~~~f~i~~~~~~~~ 217 (492)
..+....+..+.. .|.. ++|+.=+-|.. .+..+-.+++.+.+..+++.+| .-.+|-..+....+.
T Consensus 137 aTsLLFSaFEsWliaEHn----ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaig 212 (454)
T KOG4332|consen 137 ATSLLFSAFESWLIAEHN----EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIG 212 (454)
T ss_pred HHHHHHHHHHHHHHHHhh----hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 8887766655544 3332 23333332222 2334455566666667777554 445554433222222
Q ss_pred -HHhhheeeeccCCCccchhhhhHHHHHHHHH-HHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCH
Q 044122 218 -IVLGFVIYETRATSHHFEKKKAIESVIFTMK-GMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQ 295 (492)
Q Consensus 218 -~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 295 (492)
.++.---.|+-.++.+. +.+..+.+ ..+.+..++++...-.+..+. -..+....+.|.+... .+-.+
T Consensus 213 mAvil~~W~ENygdps~~------kdlltqf~gaa~aiaSD~ki~LLG~iqsLF---E~smytFVFLWTPaLs--pn~e~ 281 (454)
T KOG4332|consen 213 MAVILSSWSENYGDPSEN------KDLLTQFKGAARAIASDEKIALLGAIQSLF---EGSMYTFVFLWTPALS--PNDEE 281 (454)
T ss_pred HHHHHhhhhhccCChhhh------HHHHHHhhHhHHHHhcchHHHHHHHHHHHH---hhhhheeeeeecccCC--CCccc
Confidence 22221112222111111 11212222 233344455544332222111 1122223344544321 11112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCc--hhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHH
Q 044122 296 EFVGVIYALGAVASIIGVLIYHKTLKDYPYR--NLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVS 373 (492)
Q Consensus 296 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (492)
.--|++++....++++|+-+..|+..|-..| ....+..++......+. .+...... +-......+...++...+.
T Consensus 282 iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lp-ilt~~vsP--~kes~~~s~i~F~~~E~cv 358 (454)
T KOG4332|consen 282 IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLP-ILTSSVSP--SKESPSESLIGFCLFEACV 358 (454)
T ss_pred CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHH-HHHhccCC--CcCCchHHHHHHHHHHHHH
Confidence 2347888888899999999998888765443 22333333333221111 11111110 1111122333334556677
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHH
Q 044122 374 RLRWIPMIVLSTRLCPRGIEGTFFAL 399 (492)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~g~~~g~ 399 (492)
+..++.++-+-++..|++.|++.+-.
T Consensus 359 GlfwPSimkmRsqyIPEearstimNf 384 (454)
T KOG4332|consen 359 GLFWPSIMKMRSQYIPEEARSTIMNF 384 (454)
T ss_pred hhcchHHHHHHHhhCCHHHHhhhhhh
Confidence 88888888888999999999887544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-07 Score=88.94 Aligned_cols=124 Identities=11% Similarity=0.050 Sum_probs=95.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
.+|.+++..|++.....+...+.++++|++.||++|++++.++..+..++.+..-.. . ..+..+.+-.+.
T Consensus 62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs-~---------~Fwq~~l~R~~v 131 (493)
T KOG1330|consen 62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS-N---------HFWQVLLCRGFV 131 (493)
T ss_pred hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHh
Confidence 378899999999999999999999999999999999999999888777654332111 1 112222222344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
++......+....+++|.+|.++|++.+++++.....|..+|-..+..+.++.+
T Consensus 132 GiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 132 GIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred ccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 444455555667789999999999999999999999999999888888877655
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-05 Score=76.26 Aligned_cols=167 Identities=12% Similarity=0.100 Sum_probs=113.3
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+.+|.+. ... .-..+-++++|++..++.++.-...+..++ ..++|++.||+ +-|+++..+.++..+.++...
T Consensus 264 ~~DGv~t-il~-~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-----g~k~vl~~~lvi~~~~~~~~~ 336 (438)
T COG2270 264 YIDGVNT-ILA-MGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-----GSKPVLMIGLVILSIAALYLI 336 (438)
T ss_pred HHhhHHH-HHH-HHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCceeehHHHHHHHHHHHHHH
Confidence 5666654 222 333466667999999998887666665555 88999999997 446777777766655544443
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC-hHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG-HQGALG 208 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g-w~~~f~ 208 (492)
+... ... +.+..++.++..+.....+.++..+..|+ ++-++.+|++....-.+..+||.+-+.+.+..| -|.-+.
T Consensus 337 ~~~~-~~~-f~i~gll~g~s~G~~qA~SRSy~~~lvp~--~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~ 412 (438)
T COG2270 337 FLEG-ELD-FWILGLLVGTSLGGAQASSRSYLARLVPK--GKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL 412 (438)
T ss_pred Hccc-cHH-HHHHHHHHHHhcchHHHHHHHHHHHhCCC--ccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 3332 211 22334556666666777888999999865 445888999999999999999999998877554 455555
Q ss_pred HHhHhHHHHHHhhheeeecc
Q 044122 209 ILAIPPTLLIVLGFVIYETR 228 (492)
Q Consensus 209 i~~~~~~~~~~~~~~~~e~~ 228 (492)
...++..+..+..+.+|++.
T Consensus 413 ~i~vll~iGl~~L~~v~~~~ 432 (438)
T COG2270 413 SIIVLLLIGLLLLLRVKVPG 432 (438)
T ss_pred HHHHHHHhhHhhEEeecCCC
Confidence 55454444456666677653
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-05 Score=73.99 Aligned_cols=124 Identities=14% Similarity=-0.013 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
++.+..+.+++......+..++++..+++.||+|+|+.++++..++++.+.+...... .....+.++...+..
T Consensus 43 f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~-------~~~y~~FL~~lFila 115 (422)
T COG0738 43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS-------SKSYGFFLVALFILA 115 (422)
T ss_pred hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh-------hhhHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999998888876443221111 111112222222223
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
...+..-.....++...-+++....-+.+.+.++.+|..++|.+++.+..+
T Consensus 116 ~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 116 SGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred hhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 233344445556778888888888889999999999999999999999884
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.1e-06 Score=78.66 Aligned_cols=158 Identities=9% Similarity=0.075 Sum_probs=110.8
Q ss_pred hhHHhhhhc---CcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 044122 64 TDYYWKDVQ---KVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALA 139 (492)
Q Consensus 64 ~~~~~~~~~---g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (492)
.+.|.++.+ +.+...+|.+.++..+.-++ -.+..++.+|+ +-|+.++++..+..+=..+++++++.. ..
T Consensus 243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-----g~k~~Lllag~i~~iRi~~~~~~~~~~--~i 315 (412)
T PF01306_consen 243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-----GAKNLLLLAGVIMAIRIIGSGFATNPW--VI 315 (412)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHT--SHH--HH
T ss_pred HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-----ChHhHHHHHHHHHHHHHHHHhhhcchH--HH
Confidence 355555422 33445577776666555333 55677888886 567788888888888888899998754 35
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHH-HHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH-
Q 044122 140 LTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSL-CAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL- 217 (492)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~- 217 (492)
.....+.++-.+.......-++.+..++ +...++..+ .+...++|..+.+.++|.+.|+.|.+..|++.+.+.+..
T Consensus 316 ~~~klLH~~e~~l~lva~fkYI~~~fd~--rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~ 393 (412)
T PF01306_consen 316 SLIKLLHALEFPLLLVAAFKYITAHFDK--RLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFT 393 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-G--GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCH--hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHH
Confidence 5667888888888888888888888744 334455554 346778999999999999999999999999998887766
Q ss_pred HHhhheeeeccCC
Q 044122 218 IVLGFVIYETRAT 230 (492)
Q Consensus 218 ~~~~~~~~e~~~~ 230 (492)
++..+.++++++.
T Consensus 394 li~~f~l~~~~~~ 406 (412)
T PF01306_consen 394 LISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHS--SSST
T ss_pred HHheeeecCCCcc
Confidence 5566666655443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.4e-05 Score=70.06 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=86.4
Q ss_pred eeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcch
Q 044122 282 YWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFF 361 (492)
Q Consensus 282 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (492)
.|..+.++.+|+|+++...+.....+|.-+| +..|.+.|++|.+..+.++.+...++......... ..+..+..+.
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~---~~i~~~~~~~ 98 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVS---GRIPSLPVWL 98 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh---CccCccchHH
Confidence 3444444568999999999988888888775 88899999999999998888777765543222211 1111112222
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 362 VITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
......+.+...............+.+| ++||++.|+.-....+++++-..+.-.+.+
T Consensus 99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 99 MCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 2222223332223333344444467888 679999999999988888777766555443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.5e-08 Score=98.70 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHH
Q 044122 294 SQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVS 373 (492)
Q Consensus 294 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (492)
++...+...+...++.++|+++.|++.||+|||+.+..+..+..++.++... ... ..+.......-.+.++..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~-~~~------~~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAF-APS------YNNFWMLLIGRFLIGFGI 116 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccc-ccc------cccccccccccccccccc
Confidence 4567788889999999999999999999999999998887766654432111 110 002222222233444455
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhc
Q 044122 374 RLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLV 453 (492)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (492)
+........++.|.+|++.||...++.+....+|..++..++-.+.+..+ ...|.. .+.+..+..++..+...++
T Consensus 117 g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~~~Wr~---~~~~~~~~~l~~~~~~~~~ 191 (451)
T PF00083_consen 117 GGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD--NWGWRI---LLIFGAIPSLLVLLLRFFL 191 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc--cccccc---ccccccccccccccccccc
Confidence 55566666788999999999999888887777777776665433322111 011222 3334444444444444566
Q ss_pred CCC
Q 044122 454 PKG 456 (492)
Q Consensus 454 ~~~ 456 (492)
||.
T Consensus 192 pES 194 (451)
T PF00083_consen 192 PES 194 (451)
T ss_pred ccc
Confidence 764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0001 Score=71.60 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=104.2
Q ss_pred hhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchH
Q 044122 58 SFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPI 136 (492)
Q Consensus 58 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~ 136 (492)
.+.+....+|.+..+|-+..+..+.......+.++ .+++.++++|+ +||+....+.++..++.+++.+.+....
T Consensus 253 ~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-----gkk~~~~~~~~~~~i~~~~~~f~~~~~~ 327 (467)
T COG2211 253 NIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-----GKKKLFLIGLLLLAVGYLLLYFTPAGSV 327 (467)
T ss_pred HHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHhhcCcch
Confidence 44455556666555666666666666666666666 78999999996 7888888999999999999988885556
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcccccc-----CcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETR-----ALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG 202 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~-----~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g 202 (492)
.+.++..++.++|.+...+...++++|..+.++ +.-|-..+......=+|..++..+.|++.+..|
T Consensus 328 ~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 666677788899999999999999988875311 223555666667778899999888888776554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00019 Score=71.69 Aligned_cols=135 Identities=12% Similarity=0.030 Sum_probs=76.3
Q ss_pred HhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 044122 63 VTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALT 141 (492)
Q Consensus 63 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (492)
...++.+..+|. ....+.+.+.+.++.++ .+++++++||+ +||+.+..+..+..+..++..+.++......+.
T Consensus 250 ~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-----gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (460)
T PRK11462 250 AMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-----CKVTIFWWTNALLAVISLAMFFVPMQASITMFV 323 (460)
T ss_pred HhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 344444443443 33445555666666555 78999999996 455555444433333233333333322222233
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccccc---cCcc--cchHHHHHHHHHHHHHHHHHhHhHhhhcCCh
Q 044122 142 CLIGITGGMAIADVVIDACIARNSIET---RALA--PDMQSLCAFCSGAGSLIGYSSSGFFVHHLGH 203 (492)
Q Consensus 142 ~~~l~~~g~~~~~~~~~a~~~~~~~~~---~~~r--~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw 203 (492)
..++.+++.+...+...++++|..+.+ ..+| |...+.......+|..+++.++|++.+..|+
T Consensus 324 ~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 324 FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334456666666666677777766522 1222 3334555677889999999998887765544
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0025 Score=61.58 Aligned_cols=270 Identities=13% Similarity=0.045 Sum_probs=136.8
Q ss_pred hHHhhhhcCc---ChHHHHHHHHHhhhhhhh--hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhc--C-----
Q 044122 65 DYYWKDVQKV---QPSTVQIYIGLYYLPWVM--KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALL--G----- 132 (492)
Q Consensus 65 ~~~~~~~~g~---s~~~~g~~~s~~~l~~~~--~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~--~----- 132 (492)
.--++|.+.+ ++..+.++-+..-+|..+ .++.+.++++. .|.++.-.-...+....+++++. |
T Consensus 46 lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-----t~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~ 120 (509)
T COG3202 46 LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-----TREKVFYIILGFFLGFFALFAFVIYPYKDIL 120 (509)
T ss_pred HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3345676644 456677777777776543 89999999996 45555444444444444444431 1
Q ss_pred --Cc----------h-----------HHHHHHHHHHH-HHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHH
Q 044122 133 --KL----------P-----------IALALTCLIGI-TGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSL 188 (492)
Q Consensus 133 --~~----------~-----------~~~~~~~~~l~-~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 188 (492)
++ . .|.+....... -.|.-.....-.....|.... +|..|..++++.+.+++..
T Consensus 121 hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~--~eakRFy~lf~l~~ni~ll 198 (509)
T COG3202 121 HPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTI--EEAKRFYPLFGLGANISLL 198 (509)
T ss_pred CCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHhhhhHHHHHHHHHHHHH
Confidence 10 0 01111111111 122222222334555666643 4567889999999999999
Q ss_pred HHHHhHhHhhhcC-C---------hHHHHHHHhHhHHHHHHhhheeee----ccCCCccchhhhhHHHHH-HHHHHHHHh
Q 044122 189 IGYSSSGFFVHHL-G---------HQGALGILAIPPTLLIVLGFVIYE----TRATSHHFEKKKAIESVI-FTMKGMCKS 253 (492)
Q Consensus 189 lg~~l~~~l~~~~-g---------w~~~f~i~~~~~~~~~~~~~~~~e----~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 253 (492)
++..+..++..+. . -+..+.+.+..+++++....++.+ ++....+..++++.++.+ ...+.++..
T Consensus 199 lsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~k~~~~~s~k~i 278 (509)
T COG3202 199 LSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLKLGLIESFKMI 278 (509)
T ss_pred HHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcccccccccCcHHHHHHHH
Confidence 9988888876532 1 234444544444444444444332 222100000010001111 122445666
Q ss_pred cccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCC---HHHHHHHHHHHHHH-HHHHHHHHHHHHccCCCchhh
Q 044122 254 IKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFS---QEFVGVIYALGAVA-SIIGVLIYHKTLKDYPYRNLL 329 (492)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~g~~~~~~~~~-~~~~~~~~~~l~~r~~~~~~~ 329 (492)
+|+|-++...+...+++........ .|-......+.-+ ....|-+....++. .++.....+.+.+|.|.....
T Consensus 279 ~~SkyL~~ial~vl~Y~v~inLvE~---~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~A 355 (509)
T COG3202 279 LRSKYLGAIALLVLAYGVSINLVEG---VWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGA 355 (509)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHH
Confidence 7778777776665555442211110 1111110001111 12233333344444 666778889999999988877
Q ss_pred HHHHHHHHHhhhhHH
Q 044122 330 FFAQLLYGISGMLDL 344 (492)
Q Consensus 330 ~~~~~~~~~~~~~~~ 344 (492)
.+.-++..+.+++.+
T Consensus 356 litPiv~litg~lFF 370 (509)
T COG3202 356 LITPLVMLITGVLFF 370 (509)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666666544433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00011 Score=71.65 Aligned_cols=124 Identities=13% Similarity=0.062 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-chhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPY-RNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
.+-+....|++.+...++..++++..+.+..|.+. |+-+..+.++..++.++++.+.... ....++++..-.+.
T Consensus 66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~-----~~~~y~mL~~R~l~ 140 (488)
T KOG2325|consen 66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP-----NGVKYLMLVARILT 140 (488)
T ss_pred CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHc
Confidence 67788899999999999999999999999998875 7777778777777766654443211 11122333222222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
++. .........++++..-.++|-++++......-+|..+||.+...+..
T Consensus 141 Gvg-~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 141 GVG-VGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred CcC-cccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 222 12344556777777667788888888777777888888877665543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.5e-05 Score=76.15 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
.+.+.....+..++..+|..+|.++.|.++||+|||+++.++.++..+..+. ..+ .++....++.-++.+
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~-~a~---------a~~~~~~~~~Rfl~G 182 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGIL-TAF---------APNYWMFLIFRFLSG 182 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHH-HHH---------hCcHHHHHHHHHHHH
Confidence 4556777777788999999999999999999999999999988877765432 111 123333333444555
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
+...........+.+|.+++++|+.+..+ ......+..+++..++++..
T Consensus 183 ~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 183 FFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred hhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 55555555666778999999999999999 77778888888888888877
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00021 Score=66.89 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=103.9
Q ss_pred hhhhHhhHHhhhhcCcCh--HHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCch
Q 044122 59 FFKVVTDYYWKDVQKVQP--STVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLP 135 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~--~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~ 135 (492)
......+.+..+ .+.+. .+.++..+.+.++..+ ++++|.++||+ +||+.++.+.....++.+...+.++..
T Consensus 20 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
T COG0477 20 LLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-----GRRKVLIIGLLLFLLGTLLLALAPNVG 93 (338)
T ss_pred hHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-----cchHHHHHHHHHHHHHHHHHHhCccch
Confidence 333445555555 55555 5788888888888777 68999999996 556666666655455555666666522
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHH-HHHHHHHHHHHhHhHhhhc--CChHHHHHHHhH
Q 044122 136 IALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAF-CSGAGSLIGYSSSGFFVHH--LGHQGALGILAI 212 (492)
Q Consensus 136 ~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~lg~~l~~~l~~~--~gw~~~f~i~~~ 212 (492)
...++..+...+++.+...+...+++.+..++ ..+|+...+.... ...+|.++++.+++.+... .+||..|.+...
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPE-ATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAAL 172 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33455667768888888888888888888754 2357777777777 5778888888777766654 679987766655
Q ss_pred hHHH
Q 044122 213 PPTL 216 (492)
Q Consensus 213 ~~~~ 216 (492)
....
T Consensus 173 ~~~~ 176 (338)
T COG0477 173 LGLL 176 (338)
T ss_pred HHHH
Confidence 5433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00078 Score=62.78 Aligned_cols=124 Identities=11% Similarity=0.138 Sum_probs=78.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|+++.+++.++..+...+.+...+.|.+.||+|+|+..+..+++..+.++. . ..++....+..-++.
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-----k------~~~~~~~L~~GRvlg 131 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-----K------HSSNYPVLLLGRVLG 131 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-----H------hccccHHHHHHHHHH
Confidence 37999999999999999999999999999999999999988877776654432 1 123333333333333
Q ss_pred HHHHHHHHHHH-HHHHHhc----CCCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcc
Q 044122 370 HIVSRLRWIPM-IVLSTRL----CPRGIEGTFFALLMCI-DILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 370 ~~~~~~~~~~~-~~~~~~~----~~~~~~g~~~g~~~~~-~~lg~~i~~~l~g~l~~~~g~ 424 (492)
++...+.+... ..++.|+ .|++..+..++...+. +.+-..++..++-++.++.+.
T Consensus 132 GiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~ 192 (354)
T PF05631_consen 132 GIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF 192 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC
Confidence 33333322221 2344433 4555556666665533 344556666666677776654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.4e-06 Score=78.19 Aligned_cols=190 Identities=12% Similarity=0.026 Sum_probs=115.7
Q ss_pred Hhccccc-chhhHHHHhhhhhhcccccccceeeec-cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCchh
Q 044122 252 KSIKLPQ-VWKPSLYMFLSFAVSISTHEGQFYWAT-DPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDY-PYRNL 328 (492)
Q Consensus 252 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~ 328 (492)
+.+++|+ ++.+...-+.-.+.++++...+.+|.. ...+++|+|+++..-+......-.-+...++|+++||+ |+|+.
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 4455554 333333333444556666655544443 33455889999887777666666666778889999995 99999
Q ss_pred hHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHH
Q 044122 329 LFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRG--IEGTFFALLMCIDIL 406 (492)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~l 406 (492)
+.++.+++.++-++.. .. +.......+....+.....|..=.....++.+..|++ +|-..++++....|+
T Consensus 95 I~lGail~~iGh~~L~-~~-------~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNi 166 (498)
T COG3104 95 IVLGAILMAIGHLVLA-IS-------SVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINI 166 (498)
T ss_pred HHHHHHHHHHHHHHHh-cc-------ccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeeh
Confidence 9998887776533211 10 0011111111112222333444444556677776653 344556777778899
Q ss_pred HHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044122 407 GSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPKGN 457 (492)
Q Consensus 407 g~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (492)
|+.++|.+.+++.+..|+ +..+.++++-..++++..+..+++.
T Consensus 167 Gsl~~p~i~~~~~~~~g~--------~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 167 GSLIAPIITGLLAINYGW--------HVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred HHHHHHHHHHHHHHhhCH--------HHHHHHHHHHHHHHHHHHHHccchh
Confidence 999999999999998773 3356666666677777766666543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.8e-05 Score=76.20 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHH
Q 044122 296 EFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRL 375 (492)
Q Consensus 296 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (492)
.+.+++.+...+++.++.+++|++.|++|||+.+.++.+...+..++.. .. .+...++.+-.+.++..+.
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~-~a---------~~~~~l~~GR~l~G~g~G~ 158 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIA-LA---------PSWYQLIVGRILTGLGVGG 158 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-Hh---------hhHHHHHHHHHHhccchhh
Confidence 4568899999999999999999999999999999988877776544321 11 1223334444566666666
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhcCC
Q 044122 376 RWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLVPK 455 (492)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (492)
.......+.+|..|++.||...+..+....+|..++ .+.+...+.. . .++...+.+..+.+++..+..+++||
T Consensus 159 ~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~-----~-~~Wr~~~~~~~i~~~~~~~~~~~~pe 231 (513)
T KOG0254|consen 159 ASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKV-----Y-AGWRIPLGLALIPAVILALGMLFLPE 231 (513)
T ss_pred hhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccC-----C-ccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 667777788999999999999998888888777777 4444433321 0 11222344444444444444667775
Q ss_pred CC
Q 044122 456 GN 457 (492)
Q Consensus 456 ~~ 457 (492)
..
T Consensus 232 sp 233 (513)
T KOG0254|consen 232 SP 233 (513)
T ss_pred Ch
Confidence 43
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.4e-05 Score=77.17 Aligned_cols=148 Identities=16% Similarity=0.057 Sum_probs=104.7
Q ss_pred hhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhc----------CCchHHH
Q 044122 70 DVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALL----------GKLPIAL 138 (492)
Q Consensus 70 ~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~----------~~~~~~~ 138 (492)
+.+|.++.++|.+.+...++.++ ..+.+++.+|+ +.|+.+.++.++..++.+..... ++. ..
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-----~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~--~~ 353 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-----PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDE--VF 353 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCe--ee
Confidence 45899999999998888877666 77888888885 56778888888777765443211 221 12
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC-----hHHHHHH---H
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG-----HQGALGI---L 210 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g-----w~~~f~i---~ 210 (492)
.....++.+++.+....+...++.+..++ +.+++.+++.....++|..+++.+++++.++.| .+..+.. .
T Consensus 354 ~~~~~~l~~~~~g~~~~~~~~~~~~~~p~--~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~ 431 (468)
T TIGR00788 354 VLGDSIIAEVLAQLKFMPFLVLLARLCPS--GCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGH 431 (468)
T ss_pred eeehhHHHHHHHHHHHccHHHHHHHhCCC--CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHH
Confidence 23334667778777777888888888844 567999999999999999999999999998777 4333332 2
Q ss_pred hHhHHHHHHhhheeee
Q 044122 211 AIPPTLLIVLGFVIYE 226 (492)
Q Consensus 211 ~~~~~~~~~~~~~~~e 226 (492)
.+..++.+...+++|+
T Consensus 432 ~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 432 SLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 2333333444457885
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.7e-05 Score=75.26 Aligned_cols=165 Identities=12% Similarity=0.160 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCc-chhhh-hhHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDS-FFVIT-EQCV 368 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~ 368 (492)
-+++....+.+..+..+|.++|.++.|++.||+|||+++-...+++.++.++ ..+ +.....+.. ...++ .=.+
T Consensus 79 g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~-~~~----s~~~~~~~~~m~~L~~~R~~ 153 (538)
T KOG0252|consen 79 GHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSAL-SGL----SVGTTSPLGVMMTLCFFRFL 153 (538)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHH-hcc----CCCCCCCcchhhHHHHHHHH
Confidence 3477788888999999999999999999999999999988877776665431 111 111112211 11222 2223
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccc---CcchhH-HHHHHHHH
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV---TRT---DYRNLW-LVILIRNV 441 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~---~~~---~~~~~~-~~~~~~~~ 441 (492)
.++.-+.-++...+..+|...++.||+..+...+++.+|...|..++-.+...+.- ... ..+..| ..+.+.++
T Consensus 154 LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~v 233 (538)
T KOG0252|consen 154 LGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAV 233 (538)
T ss_pred hhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHH
Confidence 33333333444445668899999999999988888888877777666655544321 111 122334 44555555
Q ss_pred HHHHHHHHHhhcCCCCccc
Q 044122 442 LRFATLGLIFLVPKGNHSN 460 (492)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~ 460 (492)
.+++.+.+-+..||++.-+
T Consensus 234 pa~~~ly~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 234 PALLVLYFRLKMPETARYT 252 (538)
T ss_pred HHHHHHHhhhcCCcchhHH
Confidence 5555555555788876543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00043 Score=65.56 Aligned_cols=154 Identities=12% Similarity=0.038 Sum_probs=111.0
Q ss_pred hhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCc-hHH
Q 044122 60 FKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKL-PIA 137 (492)
Q Consensus 60 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~-~~~ 137 (492)
-...+-||--|.+|.+..|...+.+....+..+ -...|++..|- .++|+.-.+++..+.++..+..++... +.+
T Consensus 227 QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~----~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~ 302 (403)
T PF03209_consen 227 QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRR----LGKKRTAALGCLLGALAFALIILAGPLGSPW 302 (403)
T ss_pred hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 344677888888999999999998888888776 45678777752 255667778888777776665543221 223
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhc----------CChHHHH
Q 044122 138 LALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHH----------LGHQGAL 207 (492)
Q Consensus 138 ~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~----------~gw~~~f 207 (492)
.+....++.|+|.+...+..-+..-+++.+ ++.|..++.+.....++..+|..++|.+.|. .+|-.+|
T Consensus 303 ~~~~~~~l~G~g~G~f~vgals~mM~lt~~--~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF 380 (403)
T PF03209_consen 303 LFRPGVFLLGLGNGLFTVGALSLMMDLTSA--GRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVF 380 (403)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 455667888999998887777777777743 5578889999999999999999999887652 2456677
Q ss_pred HHHhHhHHHHHH
Q 044122 208 GILAIPPTLLIV 219 (492)
Q Consensus 208 ~i~~~~~~~~~~ 219 (492)
.+.++..++.+.
T Consensus 381 ~lEa~ll~~a~~ 392 (403)
T PF03209_consen 381 ALEAVLLLAALV 392 (403)
T ss_pred HHHHHHHHHHHH
Confidence 777666655543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0001 Score=74.32 Aligned_cols=114 Identities=12% Similarity=0.032 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
+|-+ ....++.....++..+..++.|+++|.+|||..++.+.++..++.+... . -.+.--.++...+.+
T Consensus 74 iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a---t-------A~~~~~~iag~~l~G 142 (599)
T PF06609_consen 74 IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA---T-------AQNMNTFIAGMVLYG 142 (599)
T ss_pred cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh---c-------CCcHHHHHHHHHHHH
Confidence 4544 3445666677788888999999999999999999988877776544311 0 011112233334444
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGG 416 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g 416 (492)
+..+.... ....++|..|.+.|+...++.....-.....++.++.
T Consensus 143 vgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~ 187 (599)
T PF06609_consen 143 VGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ 187 (599)
T ss_pred HhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH
Confidence 44344332 2334699999999987765544332233333444433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00036 Score=63.93 Aligned_cols=346 Identities=13% Similarity=0.153 Sum_probs=171.9
Q ss_pred cchhhhhHHHhhhcccccchhhhhHhhHHhh-hhcCcChHHHHHHHHHhhh---hhhh--hhHHhhhccccccCCCCchh
Q 044122 39 SSFIFGIVLVYGLCQGFSGSFFKVVTDYYWK-DVQKVQPSTVQIYIGLYYL---PWVM--KPIWGIFTDAFPIKGYHRRP 112 (492)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~l---~~~~--~~~~G~lsDr~~~~g~~Rk~ 112 (492)
|+-+..+.+.|++..-+.-+= +.+.+|+. .+.+++..|+- .-++-. .+.+ -|+ =.+.|-. |-||
T Consensus 4 W~~~~~llC~yG~~~e~RPse--P~~tpyl~gp~~NlT~~~l~--~evyPvwTYSYLv~Lvpv-FlLTD~l-----rYKP 73 (433)
T KOG3810|consen 4 WLKITCLLCLYGFVREFRPSE--PYLTPYLLGPDKNLTEDQLT--NEVYPVWTYSYLVGLVPV-FLLTDYL-----RYKP 73 (433)
T ss_pred hhhhhhhhhhhhHHHHhCCCC--CccchhccCCCCCccHHHHh--cccccchhHHHHHHHHHH-HHHhhhh-----hcce
Confidence 444455666777776665321 22333333 44677766653 111111 1222 222 2677875 7799
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHH
Q 044122 113 YFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYS 192 (492)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~ 192 (492)
++++-.+-......+.-+.++......+ =+..|... ...++..+++-... +|+++-++.+......-.|..+|..
T Consensus 74 vivlq~ls~v~~w~~lv~g~sV~~mQvl--E~FyG~~t-AaEIAYysYIYs~V--d~~~Yqrvt~y~RaA~L~g~~~g~v 148 (433)
T KOG3810|consen 74 VVVLQALSGVPVWIMLVFGPSVKAMQVL--EFFYGPAT-AAEIAYYSYIYSKV--DPEMYKRVTGYCRAAFLVGKFVGSV 148 (433)
T ss_pred eeeeeccchhHHHHHHHhcCCchheeee--hhhcChHH-HHHHhhhheeeeec--CHHHHHHHHHHhHHHHHHHhHHHhH
Confidence 9888777767777777777765421111 11112221 12344555554444 4456777788888888888888888
Q ss_pred hHhHhhhcC--ChHHHHHHHhHhHHHHHHhhheeeeccCCC---ccc--------hhhhhHH--------HHHHHHHHHH
Q 044122 193 SSGFFVHHL--GHQGALGILAIPPTLLIVLGFVIYETRATS---HHF--------EKKKAIE--------SVIFTMKGMC 251 (492)
Q Consensus 193 l~~~l~~~~--gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~---~~~--------~~~~~~~--------~~~~~~~~~~ 251 (492)
++-.++..- ++...=.+.-....+..+..+++|.+++.. ..+ ++...+. -+....+++.
T Consensus 149 laQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~ 228 (433)
T KOG3810|consen 149 LAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQ 228 (433)
T ss_pred HHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHH
Confidence 887776532 333222232222222244556677554211 000 0000011 1222334566
Q ss_pred HhcccccchhhHHHHhhhhhhcccccc-cceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhH
Q 044122 252 KSIKLPQVWKPSLYMFLSFAVSISTHE-GQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLF 330 (492)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 330 (492)
...+||.++...+.-.+..+.+..... ....|-... .+-....-|..-++..+.+.++.+..|.+.-++.+..-+.
T Consensus 229 ~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~---~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~l 305 (433)
T KOG3810|consen 229 ECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA---PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLL 305 (433)
T ss_pred HHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC---CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHH
Confidence 777888887776655554443322111 112222111 1112233355556666777778888888765555443333
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q 044122 331 FAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLI 410 (492)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 410 (492)
++.....-++++ +.+.. ..+.+.......+......+.......-+++....+.-|..+|+.+++.-+-+.+
T Consensus 306 l~~~s~~~agll-f~m~~-------t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsi 377 (433)
T KOG3810|consen 306 LAVGSAVQAGLL-FIMAQ-------TQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSI 377 (433)
T ss_pred HHHHHHHhhhhh-hhhhc-------ccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHh
Confidence 332222222222 11111 1122333334444444555544445555667777788888888876665544443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.3e-05 Score=54.76 Aligned_cols=55 Identities=22% Similarity=0.404 Sum_probs=42.9
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHH
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAG 118 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~ 118 (492)
...+.++.++++ .|.++.|+|.+.++..+...+ .|++|.++||++ +||..+..+.
T Consensus 18 ~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~----~~~~~l~~~~ 73 (77)
T PF12832_consen 18 CLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFG----KRKVILLGSL 73 (77)
T ss_pred HHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----ccHHHHHHHH
Confidence 345567888887 999999999999998877666 999999999972 5555554443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00098 Score=61.84 Aligned_cols=123 Identities=10% Similarity=-0.019 Sum_probs=80.9
Q ss_pred hHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCccc
Q 044122 94 PIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAP 173 (492)
Q Consensus 94 ~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~ 173 (492)
.+.+++.||+ |||+.|.++.+++.++.++.....+... +.+..+...+.......+.+.+.+|..|. ..|+
T Consensus 399 LIt~~iverl-----GRKkTMal~l~~f~iflfll~~c~~rn~--~tvllf~arafisg~fqvaYvYtPEVyPT--avRa 469 (528)
T KOG0253|consen 399 LITGVIVERL-----GRKKTMALSLILFGIFLFLLTTCKTRNA--YTVLLFTARAFISGAFQVAYVYTPEVYPT--AVRA 469 (528)
T ss_pred hHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHhcCcch--hHHHHHHHHHHHhchheEEEEecCcccch--hhhh
Confidence 4689999996 7999999999999988877766554332 11222223333333334566777888744 5688
Q ss_pred chHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHHhhheeeec
Q 044122 174 DMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLGFVIYET 227 (492)
Q Consensus 174 ~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~ 227 (492)
...|......-+|.++.|+++ +....+-..+..+.+.+.++..+...++|-+
T Consensus 470 tgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence 888877788889999999988 3333343344455555565655555667743
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=9.4e-05 Score=71.72 Aligned_cols=157 Identities=13% Similarity=0.028 Sum_probs=116.0
Q ss_pred cccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHh
Q 044122 52 CQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVAL 130 (492)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~ 130 (492)
..|...++....+-..++| .+-.+...|.....-..+-++ -++.+++..|+ ++..++.+++....+=.+....
T Consensus 382 ~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-----GHv~v~~lgLa~~~~Rf~~~S~ 455 (618)
T KOG3762|consen 382 VMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-----GHVNVMYLGLACNVGRFLYYSY 455 (618)
T ss_pred HHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHh-----cccceeeehhhHHHHHHHHHHH
Confidence 3344445544444445555 887777777443334445444 67889999996 6788888888888887777788
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHH-HHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 131 LGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCS-GAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~-~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
..|.+. .+-.-+++++..+....+..+++...+ +|+.|..++++..... .+|--+|.++||.+...+|-|..|.+
T Consensus 456 L~n~W~--vLPieilqgit~aliWaa~~sY~s~va--Pp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~ 531 (618)
T KOG3762|consen 456 LQNPWM--VLPIEILQGITHALIWAAIISYASHVA--PPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI 531 (618)
T ss_pred hcCchh--eeeHHHHHHHHHHHHHHHHHHHHHhhC--CCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence 887553 344568899999999888888888887 5567888888777544 68999999999999999999999988
Q ss_pred HhHhHHHHH
Q 044122 210 LAIPPTLLI 218 (492)
Q Consensus 210 ~~~~~~~~~ 218 (492)
.++.+++.+
T Consensus 532 ~giAcl~~l 540 (618)
T KOG3762|consen 532 FGIACLVTL 540 (618)
T ss_pred HHHHHHHHH
Confidence 877776653
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.014 Score=57.99 Aligned_cols=179 Identities=13% Similarity=0.095 Sum_probs=90.7
Q ss_pred hhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhh---------cCChHHHH----HHHhHhHHHHHHhhhe
Q 044122 157 IDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVH---------HLGHQGAL----GILAIPPTLLIVLGFV 223 (492)
Q Consensus 157 ~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~---------~~gw~~~f----~i~~~~~~~~~~~~~~ 223 (492)
-.++..|..+. +|..|..+++..+.++|.+++..+..++.+ .-.|...+ .+..+.+++......+
T Consensus 165 FW~fAN~itt~--~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~ 242 (491)
T PF03219_consen 165 FWGFANEITTV--EEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRY 242 (491)
T ss_pred HHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666633 557788999999999999999888877766 12354322 2222222222223333
Q ss_pred eeecc----CC-Cc--cchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeee-ccCCCCCCCCH
Q 044122 224 IYETR----AT-SH--HFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWA-TDPKAGPAFSQ 295 (492)
Q Consensus 224 ~~e~~----~~-~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~ 295 (492)
+.+.. .. +. ++++++.+.+. .+..+.++++|.+....+...+++..........-... ..+.+.-.+ .
T Consensus 243 ~~~~vl~~~~~~~~~~~~kk~k~k~s~---~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~y-s 318 (491)
T PF03219_consen 243 MNKNVLTDPRFYPSAKKKKKKKPKMSL---KESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDY-S 318 (491)
T ss_pred HHHHccCccccchhhhcccccCCCccH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH-H
Confidence 32111 11 00 00011111122 23456667778777666555444432111110000000 001000111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhh
Q 044122 296 EFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGM 341 (492)
Q Consensus 296 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~ 341 (492)
...|-.....++.+++..++.+++.+|+|.+....+.-++..+.++
T Consensus 319 afmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~~ 364 (491)
T PF03219_consen 319 AFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITGL 364 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHH
Confidence 2234444556667777778889999999999888776655555443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00034 Score=50.59 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=58.5
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchH
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPI 136 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~ 136 (492)
.+.+.+|.+. +|.++|.++.|++.+...++|.+ .+...++.++. ++++++..+.+...++++.+++.++...
T Consensus 10 ayTplLP~M~-~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~ma~~~~~~~ 82 (85)
T PF06779_consen 10 AYTPLLPLMQ-ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-----RPRRLLRAGLLLTVLSTAAMALTHSFWL 82 (85)
T ss_pred HHHhHhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3455566555 55999999999999999999998 77788888873 6677888999999999999999887543
|
Note that many members are hypothetical proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00038 Score=67.63 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHh--cCCch-----HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc-cCcccchHHHHHHHHH
Q 044122 113 YFVIAGVLGLVSALIVAL--LGKLP-----IALALTCLIGITGGMAIADVVIDACIARNSIET-RALAPDMQSLCAFCSG 184 (492)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~-~~~r~~~~~~~~~~~~ 184 (492)
.++++.++..++.+++.+ .+... ...+.+++.+.++|.+..-+...++.+|..+++ +++|.+..++++.+.+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 466777777777777333 22211 223556677789999999999999999998876 5788899999999999
Q ss_pred HHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHHHHhh
Q 044122 185 AGSLIGYSSSGFFVHHLGHQGALGILAIPPTLLIVLG 221 (492)
Q Consensus 185 ~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 221 (492)
+|..++..+.+++-++.||...|.+.++..++.++..
T Consensus 83 ~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 83 IGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999888777664433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.003 Score=62.39 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHH
Q 044122 304 LGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVL 383 (492)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (492)
..++..++.+++.|.+.||+|+|..+........+-.+... ... ++ +.+ ...+.+ .....+....++
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~--~~~---~~------~~~-~~~l~g-~~~~~~s~~~a~ 136 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLL--FQG---YW------FFL-LLGLSG-GFSAIFSVGFAY 136 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHH--HHH---HH------Hhh-hccccc-chhhhhhhhhhh
Confidence 55778889999999999999999888776554443222111 111 11 100 000001 112223334567
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHh-hcCCCCcccc
Q 044122 384 STRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIF-LVPKGNHSNE 461 (492)
Q Consensus 384 ~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 461 (492)
+++....+.|...+|+.+.....+..++|.+++.+.+..|+ ...+.+..+..++..+... .+||+..+.+
T Consensus 137 vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~--------a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 137 VADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGI--------ALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc--------hHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 89999999999999999999999999999999999998653 2366666666667766654 7887765544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.033 Score=56.66 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=97.2
Q ss_pred hHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCC----------
Q 044122 65 DYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGK---------- 133 (492)
Q Consensus 65 ~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~---------- 133 (492)
-.|+.++++.+...+.-..+.+.-.... ..+.+.++|.+. +|-+.+.++.++..++..+..++..
T Consensus 61 v~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~----gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 61 VTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFL----GRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 3466667888887766665555443333 567899999983 6777888887777666444332110
Q ss_pred ----------ch---HHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-cc---CcccchHHHHHHHHHHHHHHHHHhHhH
Q 044122 134 ----------LP---IALALTCLIGITGGMAIADVVIDACIARNSIE-TR---ALAPDMQSLCAFCSGAGSLIGYSSSGF 196 (492)
Q Consensus 134 ----------~~---~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~-~~---~~r~~~~~~~~~~~~~G~~lg~~l~~~ 196 (492)
.. ...+...+.+.++|.+..-+...++-+|-.++ ++ ....+.+.+++...+.|..++..+..+
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 01 11233334445556665555555666665552 12 334578899999999999999888888
Q ss_pred hhhcCChHHHHHHHhHhHHHH
Q 044122 197 FVHHLGHQGALGILAIPPTLL 217 (492)
Q Consensus 197 l~~~~gw~~~f~i~~~~~~~~ 217 (492)
.-+..||..-|.+..+..++.
T Consensus 217 iq~~~~w~lgf~i~~~~~~la 237 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNALA 237 (571)
T ss_pred hhhcccceeeccHHHHHHHHH
Confidence 778899998888877766655
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0088 Score=53.11 Aligned_cols=94 Identities=13% Similarity=0.041 Sum_probs=49.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHhHhHh-----hhcCChHHHHHHHhHhHHHHHHhhheeeeccCCCccchhhhh-HHHHH
Q 044122 171 LAPDMQSLCAFCSGAGSLIGYSSSGFF-----VHHLGHQGALGILAIPPTLLIVLGFVIYETRATSHHFEKKKA-IESVI 244 (492)
Q Consensus 171 ~r~~~~~~~~~~~~~G~~lg~~l~~~l-----~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~ 244 (492)
+|+..+.+...+.++|.++....--.- ...-.|++++.+.+++.++.++.+..+. ++-+...++++++ .+...
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifG-k~fd~~~~~~k~~k~~~~~ 81 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFG-KNFDIYSPKEKQEKENSTL 81 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccCcccccccccccc
Confidence 355555555577888888764432111 1123599999888877766644444332 2111111100110 00011
Q ss_pred HHHHHHHHhcccccchhhHHH
Q 044122 245 FTMKGMCKSIKLPQVWKPSLY 265 (492)
Q Consensus 245 ~~~~~~~~~l~~~~~~~~~~~ 265 (492)
+......+.+|++..|...+.
T Consensus 82 ~~~~s~~~~LK~K~tw~w~~~ 102 (267)
T PF07672_consen 82 SKKPSYKSILKEKETWKWILI 102 (267)
T ss_pred cccchHHHHHccchHHHHHHH
Confidence 112567788999998877543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.15 E-value=5.9e-05 Score=76.19 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=1.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHH---HHHHhhhh-------------
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDL---IFILRWNL------------- 352 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------- 352 (492)
+.++++.++.|++.+..-++.++..++..++..|..+.+.+-.+.++++++.++.. ++......
T Consensus 31 rRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~ 110 (539)
T PF03137_consen 31 RRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS 110 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence 55899999999999999999999999999999887777777777776666544322 11100000
Q ss_pred -hcC-------------------CCCcchhhhhhHHHHHHHHHHHHHH----HHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 044122 353 -ALG-------------------IPDSFFVITEQCVSHIVSRLRWIPM----IVLSTRLCPRGIEGTFFALLMCIDILGS 408 (492)
Q Consensus 353 -~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~g~~~~~~~lg~ 408 (492)
..- .......+....+..+..|+...|. .+++-|.++++..+.+.|+..++..+|-
T Consensus 111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP 190 (539)
T PF03137_consen 111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP 190 (539)
T ss_dssp -----------------------------------------SSS------------------------------------
T ss_pred cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence 000 0000111122223344445544444 4567888999999999999999999999
Q ss_pred HHHHHHHHHHHHhh-cc----------c--ccCcch-hHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044122 409 LISKWGGGIVLHLL-HV----------T--RTDYRN-LWLVILIRNVLRFATLGLIFLVPKGN 457 (492)
Q Consensus 409 ~i~~~l~g~l~~~~-g~----------~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (492)
++|=.+++.+.+.+ .. + .+.|-+ +|.-+++++.+.++..+.++..|++-
T Consensus 191 a~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 191 ALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 99888888877643 11 1 122333 46666666666666666566666543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.25 Score=48.76 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc-cCCCchhhHHHHHHHHHhhhhHHHHHHhhh----hhcCCCCcchhhhhhHHHHHHH
Q 044122 299 GVIYALGAVASIIGVLIYHKTLK-DYPYRNLLFFAQLLYGISGMLDLIFILRWN----LALGIPDSFFVITEQCVSHIVS 373 (492)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~l~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 373 (492)
-.+.....++-++|..+..+..- +...|.+...+ +.=.+ +.++++..... ....+++.++.+....+.++..
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~~p~~~~~~l~i~s-~~R~i--FIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFMWPDEDSRWLPILS-FLRVL--FIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeEeeCCCccchHHHH-HHHHH--HHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 34456888999999886654321 11112333222 11111 11222211111 0001234444454555666666
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 374 RLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGI 417 (492)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~ 417 (492)
|......+.+..+.+++++|-.+-.+......+|-.+|+.++-.
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555566677777888888788888888888888776433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0057 Score=58.54 Aligned_cols=125 Identities=16% Similarity=0.093 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCC-cc--hhhhhhH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPD-SF--FVITEQC 367 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~ 367 (492)
+| +....-+...+..+.++.-.+.+-|+.||+|.|..+.++...-+++..+-+.-.. -.++. .. ....++.
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~-----p~v~~~f~~~l~~~Gq~ 148 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL-----PFVPPLFRRPLTHTGQS 148 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC-----ccccccchhhhhHHhHH
Confidence 45 5566667778999999999999999999999999999888777765433221111 00111 12 1222223
Q ss_pred HHHHHHHHHHHHH-HHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044122 368 VSHIVSRLRWIPM-IVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLL 422 (492)
Q Consensus 368 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~ 422 (492)
+......+ .+.. .-+..-.+|+++|+++..+-...+.+|.+++.++...+..+.
T Consensus 149 iaa~Aq~F-im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 149 IAAAAQPF-ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHhhhH-hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 32222211 1111 112345689999999998888888899999988888887754
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.001 Score=47.63 Aligned_cols=48 Identities=10% Similarity=0.233 Sum_probs=42.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHH
Q 044122 287 PKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQL 334 (492)
Q Consensus 287 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~ 334 (492)
+.++.|+|+.++|.+.++..+..+++.+++|.++||.++++.......
T Consensus 26 ~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 26 YLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 334589999999999999999999999999999999999888776543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.16 Score=49.02 Aligned_cols=148 Identities=15% Similarity=0.164 Sum_probs=86.6
Q ss_pred CCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 291 PAFSQEFVGV-IYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 291 ~g~~~~~~g~-~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
.|+++.++.- +.-+..-..++..+....+.|..+.|.++++..+...+.-++ +.+.. ..... -+.
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~l-ll~~~---------sv~~m----q~~ 100 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLL-LLFGT---------SVLAM----QLM 100 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHC---------cHHHH----HHH
Confidence 6888877642 333344445556666777889899999998876665543222 11111 10111 122
Q ss_pred HHHHHHHH---HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHH
Q 044122 370 HIVSRLRW---IPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFAT 446 (492)
Q Consensus 370 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 446 (492)
.+..+... ....+++-..+|+++--++.+...+..-+|..++..++-.+...-+ .+|.. +..+......++
T Consensus 101 q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~---~sy~~---L~~isl~~~~~a 174 (412)
T PF01770_consen 101 QFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG---VSYFQ---LNYISLASVSLA 174 (412)
T ss_pred HHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCHHH---HHHHHHHHHHHH
Confidence 33333333 3344555566788777788888888888888888888887776433 23333 344444555566
Q ss_pred HHHHhhcCCCCc
Q 044122 447 LGLIFLVPKGNH 458 (492)
Q Consensus 447 ~~~~~~~~~~~~ 458 (492)
+++.+++|..+.
T Consensus 175 ~~~~~fLP~~~~ 186 (412)
T PF01770_consen 175 LLIALFLPMPKR 186 (412)
T ss_pred HHHHHHcCCCCc
Confidence 666667776543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0058 Score=55.27 Aligned_cols=311 Identities=15% Similarity=0.180 Sum_probs=143.8
Q ss_pred HHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhh
Q 044122 80 QIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVID 158 (492)
Q Consensus 80 g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (492)
|.+.-.-.+|..+ +...-.+.||++ ++.| +.+..++.+.+.++.+++.+... .+.+..+.+++.++..+..-
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfp---f~~R--i~~~v~~sa~s~~lVafs~s~~~--sL~GV~~aSissGlGEiTFL 137 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFP---FGFR--IALVVLLSALSFFLVAFSNSVPM--SLLGVVFASISSGLGEITFL 137 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcc---cchH--HHHHHHHHhcceEEEEeccchhH--HHhhhhhhhhcCCcceeehh
Confidence 3333444556544 777888899985 4455 33445677777777788876553 44555666777776666554
Q ss_pred hhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhh--cCChHHHHHHHhHhHHHHHHh-hheeeeccCCCcc--
Q 044122 159 ACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVH--HLGHQGALGILAIPPTLLIVL-GFVIYETRATSHH-- 233 (492)
Q Consensus 159 a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~--~~gw~~~f~i~~~~~~~~~~~-~~~~~e~~~~~~~-- 233 (492)
++.+.+- +....+ +..+...++++|..--..+.+ .++.|...++...+.++.... ++.+++++....+
T Consensus 138 ~lss~Y~------~~~i~~-WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl 210 (409)
T KOG3880|consen 138 ALSSRYP------SIVIAG-WSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTL 210 (409)
T ss_pred hhhccCC------Cceecc-ccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCc
Confidence 4444332 111121 112333344444433333433 457888888887777776444 4445544322100
Q ss_pred --c-h------------hhh----hHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCC
Q 044122 234 --F-E------------KKK----AIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFS 294 (492)
Q Consensus 234 --~-~------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 294 (492)
. + +.+ .....++.++.++..++ .+......-+.-.+...+... ..+|-- ..+...+
T Consensus 211 ~~~~~~~~~~~~~~~a~e~~sv~s~~~~~~e~~~~i~pll~--~MvPL~~VY~~EY~INQGl~e-ll~F~c--~~g~sls 285 (409)
T KOG3880|consen 211 QPSTEIIPSQYLPFEAAEEKSVPSRRLGLKETLKRIKPLLK--YMVPLALVYFAEYFINQGLAE-LLLFPC--SHGFSLS 285 (409)
T ss_pred CccceeccCCCCcccccccccCchhhhcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhHh-hEEecc--ccCCccc
Confidence 0 0 000 01112222233333322 111111111111111111111 112210 1112222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHH
Q 044122 295 -QEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVS 373 (492)
Q Consensus 295 -~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (492)
+.|+-+......+|.++.. --.+-+..+ .+..-.++..+ -++... .. ..++-.+..++++......++.+
T Consensus 286 ~~sqYRwyqvlYQlGVFiSR----SS~~~~~~p-~l~~LailQ~v-Nl~ff~-~~--a~~~ftpsi~ivf~lI~~EGLlG 356 (409)
T KOG3880|consen 286 KDSQYRWYQVLYQLGVFISR----SSINLFTMP-YLWLLAILQFV-NLLFFL-LQ--AWYWFTPSIWIVFALILFEGLLG 356 (409)
T ss_pred hhhcchhhheeeeeeEEEEe----ccceEEech-HHHHHHHHHHH-HHHHHH-HH--HHHHhccHHHHHHHHHHHHhhcC
Confidence 2234444444444333221 111111122 22222222221 111111 11 11233455555555556777777
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 374 RLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIV 418 (492)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l 418 (492)
|..+....--+.+..++++|-.+++......++|..++.+++-.+
T Consensus 357 GasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 357 GASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred chHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 877777776677778889998888887766667666666554333
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.036 Score=54.90 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=74.4
Q ss_pred eeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----Cchhh-HHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 044122 282 YWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYP----YRNLL-FFAQLLYGISGMLDLIFILRWNLALGI 356 (492)
Q Consensus 282 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (492)
+|..+. +|+++.+...+.....+.- ...++.|.+.|-+. +||.. .++.++..+. ...+...... .
T Consensus 14 ~~l~~~---l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~-~~~~~~~~~~-----~ 83 (433)
T PF03092_consen 14 PFLKDD---LGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVS-ALVLALLPAS-----E 83 (433)
T ss_pred HHHHHH---cCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHH-HHHHHhcccc-----c
Confidence 444444 8999999887665554433 34577888888763 34443 3343333221 1111111110 0
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 357 PDSFFVITEQCVSHIVSRLRWIPMIVLSTRLC---PRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
...........+..+...+.....-+++.|.. |.+ +|...+.......+|..++..++|.+.+..+.
T Consensus 84 ~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~ 153 (433)
T PF03092_consen 84 SSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGP 153 (433)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 11111222223334444444555555555544 433 78888888999999999999999999987653
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.05 Score=44.99 Aligned_cols=107 Identities=13% Similarity=0.069 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHH
Q 044122 303 ALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIV 382 (492)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (492)
++......+..++.+.+.+++|.|+.++++.+...+-.... + .++.+..+....+.++..+..+...-.
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~--~---------~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF--F---------YPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--H---------hhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 34455556666777888899999999998877666422111 1 123334444555666677777777777
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 383 LSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 383 ~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
++.+...++.+++..|+...+.+.+..+|..+.-.+.+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999888888777655543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.066 Score=55.63 Aligned_cols=158 Identities=13% Similarity=0.029 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKD-YPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
+|+++.....+........-+...+.+.+.|+ +|+++.+.++.++..++..+ +.+.. .............+....+.
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~l-lai~a-~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHAL-LSFGA-IPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhcc-CcccccchHHHHHHHHHHHH
Confidence 67888777666655544455555666777775 58888888777666654322 11111 00000000001111111222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHH
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRG---IEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFAT 446 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 446 (492)
....+..-+...+...+..+++ ++-+.+.++....++|+.+++.+.+++.+..+-. +.+..++..+.+++++.+++
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~f-g~~~~~~~aF~i~~i~m~ia 174 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCF-GCQDCYPLAFGVPAILMILA 174 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccCcchHHHHHHHHHHHHHH
Confidence 2222333333445556655543 3567788888888999999999999887653210 11223455666666666666
Q ss_pred HHHHh
Q 044122 447 LGLIF 451 (492)
Q Consensus 447 ~~~~~ 451 (492)
++...
T Consensus 175 ~lvf~ 179 (654)
T TIGR00926 175 LIVFM 179 (654)
T ss_pred HHHHH
Confidence 55543
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.012 Score=60.55 Aligned_cols=173 Identities=14% Similarity=0.160 Sum_probs=116.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHH---HHHhh-----h----hhcC-
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLI---FILRW-----N----LALG- 355 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~----~~~~- 355 (492)
+.++++.++.|++....-++..+......++..|..+.+.+-.+.+++++..++..+ +.... . ....
T Consensus 125 rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~ 204 (735)
T KOG3626|consen 125 RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPS 204 (735)
T ss_pred hhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCc
Confidence 448899999999988889999999999999999988888887777777765443221 10000 0 0000
Q ss_pred -----------------C--------CCcchhhhhhHHHHHHHHHHHHHHH----HHHHhcCCCChhHHHHHHHHHHHHH
Q 044122 356 -----------------I--------PDSFFVITEQCVSHIVSRLRWIPMI----VLSTRLCPRGIEGTFFALLMCIDIL 406 (492)
Q Consensus 356 -----------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~g~~~~~~~l 406 (492)
. ......+...++..++.|+.-.|.. +++-|.+.+++...+.|+..++.-+
T Consensus 205 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~l 284 (735)
T KOG3626|consen 205 SSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAIL 284 (735)
T ss_pred cccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHh
Confidence 0 0001122222344455555555543 5667778888889999999999999
Q ss_pred HHHHHHHHHHHHHHhhccc----------ccCcch-hHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 044122 407 GSLISKWGGGIVLHLLHVT----------RTDYRN-LWLVILIRNVLRFATLGLIFLVPKGNHSNE 461 (492)
Q Consensus 407 g~~i~~~l~g~l~~~~g~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (492)
|-++|=++++++...+... .+.|-+ +|.-++++..+.+++.+.+++.|++..++.
T Consensus 285 GPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 285 GPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred hhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 9999999999988754211 123433 467788888888888888888888766543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.64 Score=46.24 Aligned_cols=128 Identities=13% Similarity=0.021 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhc-----------CCC----
Q 044122 294 SQEFVGVIYALGAVASII-GVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLAL-----------GIP---- 357 (492)
Q Consensus 294 ~~~~~g~~~~~~~~~~~~-~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---- 357 (492)
+...+.++.....+.+.+ ..++.+++.+|+++++++............+......+....+ ..+
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 335677776655454444 4889999999999999887655444433222111111000000 000
Q ss_pred ------CcchhhhhhHHHHHHHHHHHH-HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 358 ------DSFFVITEQCVSHIVSRLRWI-PMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 358 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
..|....+.........+... ..+...+|....++..+.+++.....++|..+++.+..++.+.
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~ 191 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL 191 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011111122222222222222 3456779999999999999999999999999999888887753
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.73 Score=43.43 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=30.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHH
Q 044122 172 APDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTL 216 (492)
Q Consensus 172 r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~ 216 (492)
-.++.+.....-..-.++.|.+.|.+....+.|..-.+.++...+
T Consensus 173 lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 173 LTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred HhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence 344445555666777888999999998888887654444444443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.082 Score=43.74 Aligned_cols=99 Identities=6% Similarity=-0.078 Sum_probs=71.4
Q ss_pred hhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 044122 89 PWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIE 167 (492)
Q Consensus 89 ~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~ 167 (492)
...+ .++...+.+++ +.|+.++++.+...+..+.. +-++ .+.++....+.|+|.+...+....++.+..++
T Consensus 49 ~~~~s~l~~P~iv~~l-----g~K~sm~lg~~~y~~y~~~~-~~~~--~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 49 SFAISCLFAPSIVNKL-----GPKWSMILGSLGYAIYIASF-FYPN--SYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHhHHHHHHHH-----hhHHHHHHHHHHHHHHHHHH-Hhhh--HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 3344 56677778886 67888999888877654433 4443 23455667788999999988888888887744
Q ss_pred ccCcccchHHHHHHHHHHHHHHHHHhHhHh
Q 044122 168 TRALAPDMQSLCAFCSGAGSLIGYSSSGFF 197 (492)
Q Consensus 168 ~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l 197 (492)
+++++-.+++....+.+.++|..+.-.+
T Consensus 121 --~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 121 --ETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred --HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577788888888888888887766544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.55 Score=47.60 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=74.5
Q ss_pred HHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHH---HHHHHHHHHhcCCch---HHH
Q 044122 66 YYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVL---GLVSALIVALLGKLP---IAL 138 (492)
Q Consensus 66 ~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~---~~~~~~~~~~~~~~~---~~~ 138 (492)
-++.-.+|-+..+.+.+.+++.++..+ ..+.|++.++. .+.+...-..+ ..++..+........ ...
T Consensus 39 r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~------~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~ 112 (521)
T PRK03612 39 TLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA------AAGFVAVELLLALLGGLSALILYAAFAFQGLSRLL 112 (521)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445788889999999999998887 66666666441 22232222111 111111111111110 011
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHh-hhcCChHHHHHHHhHhHHHH
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFF-VHHLGHQGALGILAIPPTLL 217 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l-~~~~gw~~~f~i~~~~~~~~ 217 (492)
.....++.++-.+...|....+..+.. .++-++..|..+....+|.++|.++.+++ ...+|-....++.+.+.++.
T Consensus 113 ~~~~~~~~~~l~G~~~Pl~~~~~~~~~---~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~ 189 (521)
T PRK03612 113 LYVLVLLIGLLIGMEIPLLMRILQRIR---DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLA 189 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 112222333444444333333332211 11235567777789999999999998864 45788665555555555554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=3.3 Score=39.93 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=19.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCchhhH
Q 044122 295 QEFVGVIYAL-GAVASIIGVLIYHKTLKDYPYRNLLF 330 (492)
Q Consensus 295 ~~~~g~~~~~-~~~~~~~~~~~~~~l~~r~~~~~~~~ 330 (492)
+...-+.... ..+...+|...+.++..+ ++|++..
T Consensus 281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i 316 (406)
T KOG1479|consen 281 DWYALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTI 316 (406)
T ss_pred hhhHHHHHHHHhHHHHHhhhhhhhcccCC-CCceehH
Confidence 3333344444 788888887777765432 3344443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.38 Score=48.77 Aligned_cols=131 Identities=16% Similarity=0.105 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
+|-+....+.+.++...+.-+|+.+.+++.++ ..++....-..+..+..+....+.. ...+. .......+....+..
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~~~e~~i~l~~~~~~~ll~~-~~~~~-~~~~~~~~~~~~~~~ 121 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFVAVELLLALLGGLSALILYA-AFAFQ-GLSRLLLYVLVLLIG 121 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHH
Confidence 56677778888888888888999888877633 2222222111111111111111100 00010 000011112222333
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccc
Q 044122 371 IVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH-LLHVT 425 (492)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~-~~g~~ 425 (492)
++.|...+...-+..+ ...+..|...|-......+|+.+|+++.+++.- ++|..
T Consensus 122 ~l~G~~~Pl~~~~~~~-~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~ 176 (521)
T PRK03612 122 LLIGMEIPLLMRILQR-IRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLI 176 (521)
T ss_pred HHHHHHHHHHHHHHHh-ccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchH
Confidence 4444443322222222 222234566677778899999999999888664 66643
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.74 Score=42.47 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHH
Q 044122 296 EFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRL 375 (492)
Q Consensus 296 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (492)
...++......++..++.++.|++.||.|+|+.+..+....... .....+.. ..............+...+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~ 110 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLG-TLLLALAP-------NVGLALLLILRLLQGLGGGG 110 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHH-HHHHHhCc-------cchHHHHHHHHHHHHhhhHH
Confidence 46677777888888888899999999998886666554431211 11111110 01111222222223344444
Q ss_pred HHHHHHHHHHhcCCC-ChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 044122 376 RWIPMIVLSTRLCPR-GIEGTFFALLMC-IDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 376 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~-~~~lg~~i~~~l~g~l~~~ 421 (492)
.......+..+..|+ +.++...+.... ...++..+++.+++.+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 111 LLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566777888887 678888888888 5778888998888888776
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.05 E-value=7.4 Score=39.11 Aligned_cols=127 Identities=9% Similarity=0.022 Sum_probs=72.6
Q ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcC-----------C-CCc-
Q 044122 294 SQEFVGVIYA-LGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALG-----------I-PDS- 359 (492)
Q Consensus 294 ~~~~~g~~~~-~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~- 359 (492)
++..+.++-. ....++++...+..++.+|+++.+++............+......+....+. . +..
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 5566666654 3344667778889999999999998776554444332221111111000000 0 000
Q ss_pred --------chhhhhhHHHHHHHHHHHH-HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 360 --------FFVITEQCVSHIVSRLRWI-PMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 360 --------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
|....+.......+..... -.+.+..+.++.++..+.+++.....++|..+++.+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111111211112111 234566889999999999999999999999988888888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.079 Score=51.09 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=81.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCC-CCc---c
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKD----YPYRNLLFFAQLLYGISGMLDLIFILRWNLALGI-PDS---F 360 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~ 360 (492)
..+|.+....+.+....-+..++-.++.|..+|| +||||-.+..........+..+.+.......++- +.. .
T Consensus 60 ~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ 139 (498)
T KOG0637|consen 60 QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKP 139 (498)
T ss_pred HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccch
Confidence 3478888888888877777777777888877775 6888888877666655444433333322211111 111 1
Q ss_pred hh----hhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHHHHHHHHHHH
Q 044122 361 FV----ITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGT-FFALLMCIDILGSLISKWGGG 416 (492)
Q Consensus 361 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~lg~~i~~~l~g 416 (492)
.. +....+.-+.......|.-++..+.+..+.+-+ +.+.+..+..+|+.+|=.+++
T Consensus 140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 11 112223344455667888899999988777766 777777777777777665554
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.8 Score=42.76 Aligned_cols=136 Identities=17% Similarity=0.118 Sum_probs=75.8
Q ss_pred hcccccchhhhhHhhHHhhh--hcCcChHHHHHHHHH-hhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKD--VQKVQPSTVQIYIGL-YYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSAL 126 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~--~~g~s~~~~g~~~s~-~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~ 126 (492)
+..|+..++.....|..+.- ..+.+...+-.+.++ ..++..+ ..+++.+++|.++ ++|++.+.++..+..+..+
T Consensus 250 ~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~--fg~~~~~~~~~~~~~~~~~ 327 (461)
T KOG3098|consen 250 FYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG--FGRKPTVLIGIIIHLIGFL 327 (461)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh--cccCcchhHHHHHHHHHHH
Confidence 44555555544444432221 133333333322222 2334444 6788999999743 4578888888877777666
Q ss_pred HHHhcCCc----------------hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHH
Q 044122 127 IVALLGKL----------------PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIG 190 (492)
Q Consensus 127 ~~~~~~~~----------------~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg 190 (492)
+....... .....++..++.|++-+.........+....+++ |..+.++...-..++..++
T Consensus 328 li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~---~~~~fsi~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 328 LIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD---RAQAFSLFKFYQSVASCVA 404 (461)
T ss_pred HHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHH
Confidence 65543211 1223455567778888877777777777776544 4555555555555555444
Q ss_pred H
Q 044122 191 Y 191 (492)
Q Consensus 191 ~ 191 (492)
-
T Consensus 405 ~ 405 (461)
T KOG3098|consen 405 F 405 (461)
T ss_pred h
Confidence 3
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.52 Score=34.23 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGI 338 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~ 338 (492)
++.++|..+.|++.+...+|.++|++...++.++...++.+..+.+...+
T Consensus 20 ~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~ 69 (85)
T PF06779_consen 20 ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVL 69 (85)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999998887777777766554443
|
Note that many members are hypothetical proteins. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=93.22 E-value=2.6 Score=40.81 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHH
Q 044122 299 GVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWI 378 (492)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (492)
+.+...-.+-+++..+.++++.+|.+.+.-.....++..++ ++...+. ++.+.-+.+..+.++..+..-.
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g-~l~va~~---------~~v~~~l~Gv~las~ssg~GE~ 131 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAG-MLLVAFS---------PSVWVRLLGVVLASLSSGLGEV 131 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHH-Hhheeec---------cchhHHHHHHHHHhhhhhhhHH
Confidence 33444455566777778888899888665555444444432 2211111 1222223333344444444444
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044122 379 PMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 379 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
....+.. ..++. ..+-+.+-...++.+|+...-.+.+ .|.
T Consensus 132 tfL~lt~-~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~ 171 (402)
T PF02487_consen 132 TFLSLTH-FYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGL 171 (402)
T ss_pred HHHHHHH-hcCcc----ccccccCCcChhhHHHHHHHHHHHH-hCc
Confidence 4444433 33432 2333334444555666655544444 554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=92.91 E-value=3.4 Score=40.92 Aligned_cols=36 Identities=8% Similarity=-0.088 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHH
Q 044122 299 GVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQL 334 (492)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~ 334 (492)
.++.....+..++..+...++.+|++.+.-+..+.+
T Consensus 48 ~~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv 83 (437)
T TIGR00939 48 TYYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLV 83 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence 344445566666667777777788776444444433
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.033 Score=49.15 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=39.9
Q ss_pred hhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhcccc------ccCCCCchhHHHHHHHHHHH
Q 044122 64 TDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAF------PIKGYHRRPYFVIAGVLGLV 123 (492)
Q Consensus 64 ~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~------~~~g~~Rk~~l~~~~~~~~~ 123 (492)
+..++++ .|.++...++++.+..+.-++ .|+.|..+|.= ++.| ||+.|-..+.++..+
T Consensus 40 lllfltq-iglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G-~~~~wh~~gt~lVsl 104 (412)
T KOG4830|consen 40 LLLFLTQ-IGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIG-RRMSWHLIGTVLVSL 104 (412)
T ss_pred HHHHHHH-hcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhc-ceeeeeecccEEEEE
Confidence 3445655 899998888888888887777 88888766642 3456 777776666655443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=92.06 E-value=6.9 Score=38.58 Aligned_cols=124 Identities=13% Similarity=0.049 Sum_probs=77.7
Q ss_pred HhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHH---HHHHHHHHHHHhcCCc----
Q 044122 63 VTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAG---VLGLVSALIVALLGKL---- 134 (492)
Q Consensus 63 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~---~~~~~~~~~~~~~~~~---- 134 (492)
.+..|++. .|.++..+|..-+...+..+. ...+.++.+|++ -.+.=+++. ..+........+.+..
T Consensus 280 lmt~yl~~-~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG-----lvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~ 353 (432)
T PF06963_consen 280 LMTAYLKS-QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG-----LVRAGLWSLWWQWVCLALCVVSFWAPGSPFSS 353 (432)
T ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----chhhHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 44557777 599999999888887775555 777888888873 111222222 2222222223333331
Q ss_pred -hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhH
Q 044122 135 -PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSS 194 (492)
Q Consensus 135 -~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~ 194 (492)
+...++.+..+.-+|.-..|....-++-|..++ ++||...+.-....++--++-..++
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~--~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE--SERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH--HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 233344555666677777888777777776643 6799999877777777777765554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.89 E-value=4.9 Score=36.30 Aligned_cols=124 Identities=12% Similarity=0.106 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 370 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (492)
+|+.+.++|.+...+...+++...+.|-+.||.|+|+..+.-++-....++ .. ..+.....+.+-.+.+
T Consensus 67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi------TK-----hSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI------TK-----HSPQYKVLMVGRVLGG 135 (454)
T ss_pred cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH------hh-----cCCceEEEeehhhhhh
Confidence 788999999998777777777778888899999999876544333332211 11 1122222222222333
Q ss_pred HHHHHHHHHH-HHHHHhcCCCC-----hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccc
Q 044122 371 IVSRLRWIPM-IVLSTRLCPRG-----IEGTFFALLM-CIDILGSLISKWGGGIVLHLLHVT 425 (492)
Q Consensus 371 ~~~~~~~~~~-~~~~~~~~~~~-----~~g~~~g~~~-~~~~lg~~i~~~l~g~l~~~~g~~ 425 (492)
+.....+... ..++.|...++ -....++=.. .-+.+-..++...+..+.|+++..
T Consensus 136 iaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slG 197 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLG 197 (454)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccC
Confidence 3323322222 23556665332 1222222222 223355667777777888887754
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=88.94 E-value=11 Score=33.92 Aligned_cols=83 Identities=14% Similarity=-0.114 Sum_probs=36.1
Q ss_pred CCchhHHH----HHHHHHHHHHHHH-HhcCCch--HHHHHHHHHHHHH-HHHHHHhhhhhhhhhccccccCcccchHHHH
Q 044122 108 YHRRPYFV----IAGVLGLVSALIV-ALLGKLP--IALALTCLIGITG-GMAIADVVIDACIARNSIETRALAPDMQSLC 179 (492)
Q Consensus 108 ~~Rk~~l~----~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~l~~~-g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~ 179 (492)
++||+++. .+.++..++.+.. ...++.. .....+..++.|+ ..+...+ .--+--|.-..+|++-|...|+.
T Consensus 169 ~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~V-iL~lPhEyK~~~pk~ig~~Fg~i 247 (267)
T PF07672_consen 169 YKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGV-ILNLPHEYKGYNPKKIGIQFGLI 247 (267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHH-HhcChhhhcCCCcceehhHHHHH
Confidence 68888876 3344444444442 1233322 2222223333332 2332222 11222344444566677777755
Q ss_pred HHHHHHHHHHHH
Q 044122 180 AFCSGAGSLIGY 191 (492)
Q Consensus 180 ~~~~~~G~~lg~ 191 (492)
+..+.+...+..
T Consensus 248 WGfGY~~yTi~~ 259 (267)
T PF07672_consen 248 WGFGYIFYTIYD 259 (267)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.58 E-value=10 Score=36.69 Aligned_cols=25 Identities=16% Similarity=0.293 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC
Q 044122 433 WLVILIRNVLRFATLGLIFLVPKGN 457 (492)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (492)
...+.+..+..+++.+....+|+.+
T Consensus 183 ~~yF~~s~~~~llC~i~y~~l~~lp 207 (406)
T KOG1479|consen 183 LIYFITSTVILLLCFVLYLVLPKLP 207 (406)
T ss_pred ehhHHHHHHHHHHHHHHHHHhhcch
Confidence 3456666666666666666555543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.20 E-value=38 Score=33.72 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHh------hh-h----hc-CCC-C-
Q 044122 294 SQEFVGVIYALGAV-ASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILR------WN-L----AL-GIP-D- 358 (492)
Q Consensus 294 ~~~~~g~~~~~~~~-~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~----~~-~~~-~- 358 (492)
++..+.++-....+ ++++..++..++.+++.+++++.+.........++......+ .+ . +. ..| .
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 45566666655544 788888999999999999888766544443322221111110 00 0 00 112 1
Q ss_pred cchh--------hhhhHHHHHHHHHHHH-HHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044122 359 SFFV--------ITEQCVSHIVSRLRWI-PMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHL 421 (492)
Q Consensus 359 ~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~ 421 (492)
.++. -...........+... ..+....|++..++..+.+++++...+++..++..+..++.++
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0111 1111111211111111 2234557888888999999999888888888888887777764
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=85.82 E-value=14 Score=35.66 Aligned_cols=77 Identities=12% Similarity=-0.032 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHH
Q 044122 368 VSHIVSRLRWIPMIVLSTRLCPRG---IEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRF 444 (492)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 444 (492)
+..+..|..=+....+..|..+++ ++.+.+..+....|+|..++..+.+++-+..|+ +..+.++.+..+
T Consensus 42 lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~--------~~~f~i~~~~~~ 113 (372)
T PF00854_consen 42 LIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGW--------FLGFGIPAIGML 113 (372)
T ss_dssp HHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-H--------HHHHHHHHHHHH
T ss_pred HHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccch--------hhhhhHHHHHHH
Confidence 334444555555666777777654 567778888899999999999999998876552 346666666666
Q ss_pred HHHHHHhh
Q 044122 445 ATLGLIFL 452 (492)
Q Consensus 445 ~~~~~~~~ 452 (492)
++++....
T Consensus 114 ~~~~~f~~ 121 (372)
T PF00854_consen 114 LALIVFLS 121 (372)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 66665543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 492 | |||
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 3e-08 |
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-08
Identities = 43/333 (12%), Positives = 96/333 (28%), Gaps = 23/333 (6%)
Query: 91 VMKPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGM 150
+ +P++G+ +D G + ++I G+L + + + + G L L I +
Sbjct: 58 LFQPLFGLLSDKL---GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114
Query: 151 AIADV----VIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGA 206
++A I + S + + G+ I G
Sbjct: 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIV----GIMFTINNQ-FV 169
Query: 207 LGILAIPPTLLIVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYM 266
+ + +L VL F +S F++K + + P++W SLY+
Sbjct: 170 FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYV 229
Query: 267 FLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYR 326
+ + T A G + +G + + + + +
Sbjct: 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK 289
Query: 327 NLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTR 386
N L A + +R + + V+ + + + T
Sbjct: 290 NALLLAGTIM----------SVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS 339
Query: 387 LCPRGIEGTFFALLMCIDI-LGSLISKWGGGIV 418
T + + C L + G +
Sbjct: 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.98 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.94 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.33 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.12 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.1 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.04 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.01 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.98 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.87 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=275.63 Aligned_cols=386 Identities=12% Similarity=0.042 Sum_probs=272.4
Q ss_pred CcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHH
Q 044122 38 HSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVI 116 (492)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~ 116 (492)
+++.+..+...+ +..++........+|.+.+| + .+..++|++.+++.++..+ +|++|+++||+ +||++++.
T Consensus 26 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~ 97 (451)
T 1pw4_A 26 RWQIFLGIFFGY-AAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPA 97 (451)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-----CchHHHHH
Confidence 344455555555 55566555666677777665 7 9999999999999999887 99999999996 78999999
Q ss_pred HHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHH
Q 044122 117 AGVLGLVSALIVAL----LGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYS 192 (492)
Q Consensus 117 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~ 192 (492)
+.++..++.+++++ +++... +++.+++.+++.+...+...+++.|..+ +++|++.+++.+.+..+|.++++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~ 173 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAV--MFVLLFLCGWFQGMGWPPCGRTMVHWWS--QKERGGIVSVWNCAHNVGGGIPPL 173 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSH--HHHHHHHHHHHHHHTHHHHHHHHHTTCT--TTHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHH--HHHHHHHHHHHhhhccchHHHHHHHHCC--chhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 887664 5567899999999999999999999984 367999999999999999999999
Q ss_pred hHhHhhhcCC-hHHHHHHHhHhHHHH-HHhhheeeeccCCCccch--h-hhh-------HHHHHHHHHH--HHHhccccc
Q 044122 193 SSGFFVHHLG-HQGALGILAIPPTLL-IVLGFVIYETRATSHHFE--K-KKA-------IESVIFTMKG--MCKSIKLPQ 258 (492)
Q Consensus 193 l~~~l~~~~g-w~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~--~-~~~-------~~~~~~~~~~--~~~~l~~~~ 258 (492)
+++++.+..| ||+.|++.+++.++. ++.++++||++++....+ + ++. .++.+...++ .++.+++|.
T Consensus 174 ~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (451)
T 1pw4_A 174 LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKL 253 (451)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHH
Confidence 9999889998 999999998887776 455567787655422110 0 000 0000001111 356778888
Q ss_pred chhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CCchhhHHHHHHH
Q 044122 259 VWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDY--PYRNLLFFAQLLY 336 (492)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--~~~~~~~~~~~~~ 336 (492)
++...+..++............+.|..+. +|+++.+.+.+.+...++.+++.++.+++.||+ ++|+.+..+..+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEV---KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTB---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 88776665555443332222233333332 789999999999999999999999999999999 8888777665544
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HHHHHHHHH
Q 044122 337 GISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDIL-GSLISKWGG 415 (492)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~~~l~ 415 (492)
...++.. + . .......+.......+.+...+........+..+.+|++.+|+++|+.+...++ |..++|.+.
T Consensus 331 ~~~~~~~--~-~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 331 VTIATIV--Y-W----MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp HHHHHHH--T-T----SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--H-H----HhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4221111 1 0 000012222222333344444444555567889999999999999999999999 999999999
Q ss_pred HHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhc
Q 044122 416 GIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLV 453 (492)
Q Consensus 416 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (492)
|.+.++.|+. . .+.+.+++.+++.+.....
T Consensus 404 g~l~~~~g~~-----~---~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 404 GYTVDFFGWD-----G---GFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHSSCSH-----H---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcH-----H---HHHHHHHHHHHHHHHHHHH
Confidence 9999976632 2 3444444444444444433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-30 Score=255.51 Aligned_cols=352 Identities=11% Similarity=0.085 Sum_probs=254.9
Q ss_pred cchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHH
Q 044122 39 SSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIA 117 (492)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~ 117 (492)
+..+..+...+ +..++......+.+|.+. +++|++..++|++.+++.++..+ +|++|+++||+ +||+.++.+
T Consensus 25 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~ 97 (438)
T 3o7q_A 25 IIPFALLCSLF-FLWAVANNLNDILLPQFQ-QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITG 97 (438)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-----CHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHhHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchHHHHHH
Confidence 33344444444 666666667677777755 45999999999999999999887 99999999996 789999999
Q ss_pred HHHHHHHHHHH---HhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhH
Q 044122 118 GVLGLVSALIV---ALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSS 194 (492)
Q Consensus 118 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~ 194 (492)
.++..++.+++ .+++++. .+++.+++.|++.+...+...+++.|..++ ++|++..++.+.+.++|.++++.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~ 173 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNYT--LFLVGLFIIAAGLGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--TTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccHH--HHHHHHHHHHhhHHHhhhhHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888 7777654 466788999999999999999999999844 6799999999999999999999999
Q ss_pred hHhh-hcCC-------------------------hHHHHHHHhHhHHHHHHhhhe--eeeccCCCccchhhhhHHHHHHH
Q 044122 195 GFFV-HHLG-------------------------HQGALGILAIPPTLLIVLGFV--IYETRATSHHFEKKKAIESVIFT 246 (492)
Q Consensus 195 ~~l~-~~~g-------------------------w~~~f~i~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~ 246 (492)
+.+. +..+ ||+.|++.+++.++..+..++ .||++++++++++++ +.
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------~~ 247 (438)
T 3o7q_A 174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQG------SF 247 (438)
T ss_dssp THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTT------SH
T ss_pred HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccc------ch
Confidence 9988 5555 999998887776665433333 344433321111111 11
Q ss_pred HHHHHHhcccccchhhHHHHhhhhhhcccccccceee-eccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 044122 247 MKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYW-ATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPY 325 (492)
Q Consensus 247 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 325 (492)
.+..++.+++|.++...+..++..............| ..+. +|+++.+.+.+.+...++.+++.++.+++.||+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 324 (438)
T 3o7q_A 248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI---PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP 324 (438)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2455677889998877766555544333222223333 4443 68999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 044122 326 RNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDI 405 (492)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 405 (492)
|+.+..+.++..+..+. ..+. +.....+ ...+.++..+...+....+..+..|++ ++++.++.. ...
T Consensus 325 ~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 391 (438)
T 3o7q_A 325 HKVLAAYALIAMALCLI-SAFA---------GGHVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTI 391 (438)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHC---------CHHHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTT
T ss_pred hHHHHHHHHHHHHHHHH-HHHc---------CCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHH
Confidence 99888776655443221 1111 1111111 123334444555556666778888866 888888776 677
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 044122 406 LGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 406 lg~~i~~~l~g~l~~~~g 423 (492)
+|..++|.+.|++.++.|
T Consensus 392 ~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 392 IGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999999887
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=244.51 Aligned_cols=392 Identities=13% Similarity=0.110 Sum_probs=248.8
Q ss_pred hcccccchhhhhHhhHHhhhhc--------CcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQ--------KVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLG 121 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~ 121 (492)
+..|++.+.++..++.+-++ + +.+.++.|++.+++.++..+ .+++|+++||+ |||+.++++.++.
T Consensus 22 ~~~Gyd~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-----GRk~~l~~~~~l~ 95 (491)
T 4gc0_A 22 LLFGYDTAVISGTVESLNTV-FVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-----GRRDSLKIAAVLF 95 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHH-HTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHH
Confidence 66677777777666654333 3 23456788999999999888 89999999996 8999999999999
Q ss_pred HHHHHHHHhcC----------------CchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHH
Q 044122 122 LVSALIVALLG----------------KLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGA 185 (492)
Q Consensus 122 ~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~ 185 (492)
.++.+++++++ ..+...+++.|+++|+|.+...+....++.|..+ +++|++..++.+.+..+
T Consensus 96 ~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p--~~~rg~~~~~~~~~~~~ 173 (491)
T 4gc0_A 96 FISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP--AHIRGKLVSFNQFAIIF 173 (491)
T ss_dssp HHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--HHhhhhhHHhhhhhhhh
Confidence 99999988533 1134457888999999999999999999999984 46799999999999999
Q ss_pred HHHHHHHhHhHhhhc--------CChHHHHHHHhHhHHHHHHhhheeeeccCCCccch---h-hhh----------H---
Q 044122 186 GSLIGYSSSGFFVHH--------LGHQGALGILAIPPTLLIVLGFVIYETRATSHHFE---K-KKA----------I--- 240 (492)
Q Consensus 186 G~~lg~~l~~~l~~~--------~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~---~-~~~----------~--- 240 (492)
|.++++.++..+... .+||..+.+..++.++..+..+++||+|+....+. + ++. .
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~ 253 (491)
T 4gc0_A 174 GQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253 (491)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence 999998888766542 34787777777777777777788999875321110 0 000 0
Q ss_pred HHHHHHHHH------HHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 044122 241 ESVIFTMKG------MCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVL 314 (492)
Q Consensus 241 ~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 314 (492)
.+.++.... .....+.+.........++.+. .......+|.....+..+.+.........+..+..+++.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (491)
T 4gc0_A 254 QEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQF---VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTV 330 (491)
T ss_dssp HHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHH---hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHH
Confidence 000000000 0111122222222222222111 1111122222222222466666666667778888999999
Q ss_pred HHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHH-HHHHHhcCCCChh
Q 044122 315 IYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPM-IVLSTRLCPRGIE 393 (492)
Q Consensus 315 ~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 393 (492)
+.+++.||+|+|+.+..+.....+..+....... . .......+....+..........|. ..+.+|..|.+.|
T Consensus 331 ~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R 404 (491)
T 4gc0_A 331 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY-----T-QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 404 (491)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH-----T-TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTH
T ss_pred HHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh-----c-ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHH
Confidence 9999999999999988776665543322111111 0 1111122222222222333333343 4677999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHH-hhcCCCCcccc
Q 044122 394 GTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLI-FLVPKGNHSNE 461 (492)
Q Consensus 394 g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 461 (492)
+++.|+.+...+++..+++.+.+.+.+...... .+. ....+.+.+++++++.++. +++||+|+++.
T Consensus 405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-~~~-~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 405 GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-HFH-NGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhh-hhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 999999999999999999998887765432110 000 1123344445555555544 58999998865
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=238.39 Aligned_cols=353 Identities=13% Similarity=0.066 Sum_probs=224.0
Q ss_pred chhhhhHhhHHhhhh-----cCcChHHHHHHHHHhhhhhhh-hhHHhhhccc-cccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 57 GSFFKVVTDYYWKDV-----QKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDA-FPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 57 ~~~~~~~~~~~~~~~-----~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr-~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
.......++.|++++ +|.+..+.+++.+++.++..+ ++++|+++|| + +||+.++.+.++..++.++++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-----g~r~~~~~~~~~~~~~~~~~~ 103 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-----GARPAVFWGGVLIMLGHIVLA 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHHHH
Confidence 334445667777776 999999999999999999887 9999999999 6 789999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
++++... +++.+++.+++.+...+...+++.|..+++++.|+...++++.+.++|..++|.+++++.++.|||+.|++
T Consensus 104 ~~~~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 104 LPFGASA--LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp SCCSTTH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HhhhHHH--HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9887654 55678899999999999999999999866444578888889999999999999999999999999999999
Q ss_pred HhHhHHHHHHhhhee-eeccCC----CccchhhhhHHH-HHH--------------------------------------
Q 044122 210 LAIPPTLLIVLGFVI-YETRAT----SHHFEKKKAIES-VIF-------------------------------------- 245 (492)
Q Consensus 210 ~~~~~~~~~~~~~~~-~e~~~~----~~~~~~~~~~~~-~~~-------------------------------------- 245 (492)
.++..++..+..++. ++..++ +.+..++++.++ .+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (491)
T 4aps_A 182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIP 261 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHH
Confidence 877666554333322 221111 111000110000 000
Q ss_pred ------HHHHHH--Hhccccc--chhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044122 246 ------TMKGMC--KSIKLPQ--VWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLI 315 (492)
Q Consensus 246 ------~~~~~~--~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 315 (492)
..++.. ...+++. .+...+..++..............+..+. .+.+....+.+.....++.+++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (491)
T 4aps_A 262 VFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER---VDSSWFPVSWFQSLNPLFIMLYTPF 338 (491)
T ss_dssp HHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS---CCCSSSCSGGGTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH---hccCccCHHHHhccchHHHHHHHHH
Confidence 000000 0011111 11112122222221222222222333332 3444345566667778888888999
Q ss_pred HHHHHccCCCchhhH-----HHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 044122 316 YHKTLKDYPYRNLLF-----FAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPR 390 (492)
Q Consensus 316 ~~~l~~r~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (492)
.+++.||+++|+... .+..+..+..+.. ...............+.......+.++..+....+...+..+..|+
T Consensus 339 ~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~ 417 (491)
T 4aps_A 339 FAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLM-AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK 417 (491)
T ss_dssp HHHHHHHTTTC---CHHHHHHHHHHHHHHHTTT-HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence 999999999886544 3333333322211 1111000000001112222333444455555566677888999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 391 GIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 391 ~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
+.+|+++|+.+...++|..+++.+.+.+.+
T Consensus 418 ~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 418 AFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp TCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999887754
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=238.06 Aligned_cols=343 Identities=13% Similarity=0.079 Sum_probs=244.0
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+..++......+.+|.+.++ +|.+..+++++.+++.++..+ +|++|+++||+ +||+.++.+.++..++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-----GRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-----CCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHHHHHHHH
Confidence 44555556666677776554 999999999999999999877 99999999996 678888899999999988888
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
++++. ..++..+++.+++.+...+...+++.|..++ ++|++.+++.+.+..+|..+++.+++++.++.|||+.|++
T Consensus 84 ~~~~~--~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 84 TTSSL--TVLIAASAMQGMGTGVGGVMARTLPRDLYER--TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HhccH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 87754 3466778999999999999999999998843 6799999999999999999999999999998999999999
Q ss_pred HhHhHHHHHH-hhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCC
Q 044122 210 LAIPPTLLIV-LGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPK 288 (492)
Q Consensus 210 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (492)
.+++.++..+ ..+++||++++++++++. .++.++.+|+|.++...+..++............+.+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 229 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVDAPRTRL---------LTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV- 229 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTTCCCCCT---------TTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-
T ss_pred HHHHHHHHHHHHHHHCcccCCCCcccccH---------HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888777644 556778765543321111 02234455677777666555544433222222222232222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+|+++.+.+.+.....++.+++.++.+++.||.++ ....+........+.......... .+.+..+....+
T Consensus 230 --~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l 300 (375)
T 2gfp_A 230 --LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST--LMWQSVICCLLAGLLMWIPDWFGV-----MNVWTLLVPAAL 300 (375)
T ss_dssp --HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH--HHHHHHHHHHHTSSSSSHHHHHHH-----HHHHHHHHHHHH
T ss_pred --hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcc-----ccHHHHHHHHHH
Confidence 67888999999999999999999999999998775 222222221221111111111000 011122222334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
.++..+........+..+..| +++|++.|+.+...++|..+++.+.|.+.+..+
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 444555556666777888888 899999999999999999999999999987654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-28 Score=238.53 Aligned_cols=371 Identities=12% Similarity=0.059 Sum_probs=212.0
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHH---HHHHhcCCc
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSA---LIVALLGKL 134 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~---~~~~~~~~~ 134 (492)
...+.+|.++++++|.|+.++|++.+++.++..+ +|++|+++||+ +||+.++.+.++..++. ....+.+..
T Consensus 25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-----Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2cfq_A 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-----TTCCHHHHHHHHTTSCHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445678888887999999999999999998877 99999999996 56777776665554321 111111100
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhH
Q 044122 135 PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPP 214 (492)
Q Consensus 135 ~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~ 214 (492)
. ...+..+.+.+++.+...........++.++.+++++...+..+.+.++|..++|.+++++.+ .+||..|++.++..
T Consensus 100 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 100 Q-YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp H-TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred H-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 0 000111222222222222222222222222222235666666666778899999999998877 58999998877765
Q ss_pred HHHHHhhheeeeccCC-Cccchh-hhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCC
Q 044122 215 TLLIVLGFVIYETRAT-SHHFEK-KKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPA 292 (492)
Q Consensus 215 ~~~~~~~~~~~e~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 292 (492)
++..+..++.+|++++ .++.++ +++.+ +...++.++.+++|.++...+..+.............+.|..+..+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (417)
T 2cfq_A 178 LILAVLLFFAKTDAPSSATVANAVGANHS--AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGE 255 (417)
T ss_dssp TTHHHHSCSSCCCCSCSSCSSSSSSSCCC--CCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHcCcccccccccccccccccc--cccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5444444444433211 100000 00000 0011345567788887766544333222111111112222222211112
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHH
Q 044122 293 FSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIV 372 (492)
Q Consensus 293 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (492)
.+....+...++..++.+++.++.+++.||+++|+.+..+..+..+..+ .+.. .++....+....+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~l~~~~ 325 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII---GSSF-------ATSALEVVILKTLHMFE 325 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHTT-------CCSHHHHHHHTTHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH---HHHH-------hccHHHHHHHHHHHHHH
Confidence 3345667777788888899999999999999999987766554443211 1100 11212222222233333
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHh
Q 044122 373 SRLRWIPMIVLSTRLCPRGIEGTFFAL-LMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIF 451 (492)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (492)
......+...+..|..|++.+|+++++ +++..++|..++|.++|++.+..|+ ...+.+.+++.+++.+..+
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--------~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--------QGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--------HHHHHHHHHHHHHHHHHHH
Confidence 334444556788999999999999998 4888889999999999999987552 2244555555555555544
Q ss_pred -hcCCC
Q 044122 452 -LVPKG 456 (492)
Q Consensus 452 -~~~~~ 456 (492)
..||+
T Consensus 398 ~~~~~~ 403 (417)
T 2cfq_A 398 FTLSGP 403 (417)
T ss_dssp TSSCCS
T ss_pred hhhcCC
Confidence 34443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-23 Score=206.75 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=127.3
Q ss_pred hhhhHhhHHhhhhcC------cChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhc
Q 044122 59 FFKVVTDYYWKDVQK------VQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALL 131 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g------~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~ 131 (492)
.....++.++++++| .+..+++++.+++.++..+ .+++|+++||+ .+||+.+..+.++..++.++++++
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~----~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF----FGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS----SCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHh
Confidence 344567778887799 9999999999999998877 99999999994 167888888999999998888888
Q ss_pred C-CchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchH---HHHHHHHHHHHHHHHHhHhHhhhcCChHHHH
Q 044122 132 G-KLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQ---SLCAFCSGAGSLIGYSSSGFFVHHLGHQGAL 207 (492)
Q Consensus 132 ~-~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~---~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f 207 (492)
+ +.. .+++.+++.+++.+...+...+++.|..++ ++|++.. ++.+.+.++|.+++|.+++++.+..|||+.|
T Consensus 106 ~~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 106 EHSVQ--GFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp SSCHH--HHHHHHHHHHHHHHTTHHHHHHHHHHTCST--TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred cccHH--HHHHHHHHHHHhccccchhHHHHHHHHcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 7 544 355678889999998888899999999854 4565444 4488999999999999999999999999999
Q ss_pred HHHhHhHHHHHHhh
Q 044122 208 GILAIPPTLLIVLG 221 (492)
Q Consensus 208 ~i~~~~~~~~~~~~ 221 (492)
++.+++.++..+..
T Consensus 182 ~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 182 GIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99888766654433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=122.45 Aligned_cols=165 Identities=13% Similarity=0.081 Sum_probs=123.6
Q ss_pred ccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHH-HHHHHHHhcC
Q 044122 55 FSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGL-VSALIVALLG 132 (492)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~-~~~~~~~~~~ 132 (492)
.........+|.++++.+|.+..+.+++.+...++..+ .++.|+++||+. + +||+.+..+..+.. ++.+++.+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF--R-GNRGATGVFFMTLVTIATIVYWMNP 342 (451)
T ss_dssp HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--T-TCHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-CCchhHHHHHHHHHHHHHHHHHHhc
Confidence 33344556778888887999999999999998888777 899999999950 0 46666666665555 6666666655
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHH-HHHHHHHhHhHhhhcCChHHHHHHHh
Q 044122 133 KLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGA-GSLIGYSSSGFFVHHLGHQGALGILA 211 (492)
Q Consensus 133 ~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~l~~~l~~~~gw~~~f~i~~ 211 (492)
+..........++.+++.+...+...+++.|..++ ++|++..++.+....+ |..+++.+.|++.++.||+..|++.+
T Consensus 343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 420 (451)
T 1pw4_A 343 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 420 (451)
T ss_dssp TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 43333444555666777666666677788888743 5689999999999999 99999999999999999999999988
Q ss_pred HhHHHHHHhhhee
Q 044122 212 IPPTLLIVLGFVI 224 (492)
Q Consensus 212 ~~~~~~~~~~~~~ 224 (492)
++.++..+..+++
T Consensus 421 ~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 421 GGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8777764444433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7e-10 Score=108.92 Aligned_cols=152 Identities=14% Similarity=0.044 Sum_probs=112.8
Q ss_pred hhhhHhhHH-hhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchH
Q 044122 59 FFKVVTDYY-WKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPI 136 (492)
Q Consensus 59 ~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~ 136 (492)
.....+|.| +++.+|.+..+.+++.+...+...+ .++.|+++||+ +||+.+..+.++..++.+++.+.++...
T Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (438)
T 3o7q_A 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----APHKVLAAYALIAMALCLISAFAGGHVG 350 (438)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 344567778 8887799999999999998887777 89999999996 6788888888888888777777765332
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC-hHHHHHHHhHhHH
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG-HQGALGILAIPPT 215 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g-w~~~f~i~~~~~~ 215 (492)
+...++.+++.+...+...++..|..+++ ++...++.. ...+|..++|.+.|++.+..| ++..|++.++..+
T Consensus 351 ---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 351 ---LIALTLCSAFMSIQYPTIFSLGIKNLGQD---TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp ---HHHHHHHHHHHTTHHHHHHHHHHSSCGGG---HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22335566676666667777766766432 566666655 566999999999999999988 9988887665554
Q ss_pred HHHHhhh
Q 044122 216 LLIVLGF 222 (492)
Q Consensus 216 ~~~~~~~ 222 (492)
+..+..+
T Consensus 424 ~~~~~~~ 430 (438)
T 3o7q_A 424 VIFIFAR 430 (438)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4433333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.9e-10 Score=111.90 Aligned_cols=123 Identities=13% Similarity=0.022 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKD-YPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
+|++..+.+++.+...++..++.++.|++.|| +|+|+.+..+.++..+..+. ... .++....+....+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~l~ 118 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV---LAL-------PFGASALFGSIILI 118 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH---HHS-------CCSTTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH---HHH-------hhhHHHHHHHHHHH
Confidence 78999999999999999999999999999999 89999998887666543322 111 12223333344455
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGI--EGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
++..+....+...++.|.+|+++ |+.++++++...++|..++|.+++.+.++.|
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 66666667777888999999988 7888898999999999999999999998765
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=106.54 Aligned_cols=158 Identities=9% Similarity=-0.016 Sum_probs=108.2
Q ss_pred HhhHHhhhhcC---cChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHH
Q 044122 63 VTDYYWKDVQK---VQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIAL 138 (492)
Q Consensus 63 ~~~~~~~~~~g---~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (492)
.+|.++++.++ .+..+.++..++..+...+ .++.|+++||+ +||+.+..+.++.+++.+..++.++.. .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~--~ 314 (417)
T 2cfq_A 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFATSAL--E 314 (417)
T ss_dssp HHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHTTCCSHH--H
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhccHH--H
Confidence 35666665444 2345567766666666555 88999999997 677788778777777766666665432 2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHH-HHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSL-CAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL 217 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~ 217 (492)
++....+.+++.+...+...+++.|..++ +.|++.+++ ++....+|..++|.++|++.++.|++..|.+.+++.++.
T Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~ 392 (417)
T 2cfq_A 315 VVILKTLHMFEVPFLLVGCFKYITSQFEV--RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 33333444555544444556677777743 568888887 467788999999999999999889999998888777766
Q ss_pred HH-hhheeeeccC
Q 044122 218 IV-LGFVIYETRA 229 (492)
Q Consensus 218 ~~-~~~~~~e~~~ 229 (492)
.+ .++..||+++
T Consensus 393 ~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 393 TLISVFTLSGPGP 405 (417)
T ss_dssp HHHHTTSSCCSCT
T ss_pred HHHHHhhhcCCCc
Confidence 43 4455665443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-09 Score=107.43 Aligned_cols=155 Identities=6% Similarity=-0.116 Sum_probs=105.4
Q ss_pred ccchhhHHHHhhhhhhcccccccceeeeccCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCchhh
Q 044122 257 PQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPA------FSQEFVGVIYALGAVASIIGVLIYHKTLKDY-PYRNLL 329 (492)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~ 329 (492)
|.++...+..++..............|..+. +| +++.+.+++.+...++..++.++.|++.||+ |+|+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTA---LLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS---CSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4555555444444443322222233333332 56 8999999999999999999999999999999 999998
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH---HHHHHHH
Q 044122 330 FFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFAL---LMCIDIL 406 (492)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~l 406 (492)
..+.++..+..+.. .+. ..+....+....+.++..+...++..+++.+.+|+++|++..+. .+...++
T Consensus 89 ~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 159 (524)
T 2xut_A 89 LWLSLIYCVGHAFL-AIF--------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF 159 (524)
T ss_dssp HHHHHHHHHHHHHH-HHT--------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHh--------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 88766655433221 110 01222333334455666666677778889999999998765555 8899999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 044122 407 GSLISKWGGGIVLHLLH 423 (492)
Q Consensus 407 g~~i~~~l~g~l~~~~g 423 (492)
|..++|.+++.+.+..|
T Consensus 160 g~~~g~~~~~~l~~~~g 176 (524)
T 2xut_A 160 GSFFASLSMPLLLKNFG 176 (524)
T ss_dssp HHHHHHHTSTHHHHTSC
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999988654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=104.73 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=97.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.....+..+... +.. +....+....+.
T Consensus 29 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~---------~~~~l~~~~~l~ 98 (375)
T 2gfp_A 29 DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV-TTS---------SLTVLIAASAMQ 98 (375)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-Hhc---------cHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999988776665433221 111 112233333455
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
+...+........++.|..|+++|++.+++.+....+|..++|.+++++.++.+
T Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 152 (375)
T 2gfp_A 99 GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 555566666777888999999999999999999999999999999999877654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.9e-09 Score=105.27 Aligned_cols=163 Identities=16% Similarity=0.128 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhh-----hc---CCCCcchhhhh
Q 044122 294 SQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNL-----AL---GIPDSFFVITE 365 (492)
Q Consensus 294 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~ 365 (492)
+..+.|++.+...+|.++|+++.|++.||+|||+.+.++.++..+..+........... .. ..++....+..
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 45567888888999999999999999999999999998877776654332110000000 00 00112223333
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHH
Q 044122 366 QCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFA 445 (492)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 445 (492)
-.+.++..+........+++|..|+++|+...++.+....+|..++..++..+....+............+.+..+..++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 44556666666777778899999999999999999999999988888888777665443322223333344444445555
Q ss_pred HHHHHhhcCCC
Q 044122 446 TLGLIFLVPKG 456 (492)
Q Consensus 446 ~~~~~~~~~~~ 456 (492)
.++..+..||.
T Consensus 213 ~~~~~~~~peS 223 (491)
T 4gc0_A 213 FLMLLYTVPES 223 (491)
T ss_dssp HHHHGGGSCCC
T ss_pred hhhhhhcCCCC
Confidence 55555678875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 492 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 4e-04 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 40.5 bits (93), Expect = 4e-04
Identities = 44/383 (11%), Positives = 101/383 (26%), Gaps = 18/383 (4%)
Query: 43 FGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPW-VMKPIWGIFTD 101
F + ++ F + + D+ + S I L + +P++G+ +D
Sbjct: 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68
Query: 102 AFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGMAIADVVIDACI 161
R Y + LV + P+ + I GG+ +
Sbjct: 69 KLG-----LRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAP 123
Query: 162 ARNSIETRALAPDMQSLCAFCSGAGSLIGYSS-SGFFVHHLGHQGALGILAIPPTLLIVL 220
A + + + + + +Q + + +L VL
Sbjct: 124 AVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183
Query: 221 GFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQ 280
F +S F++K + + P++W SLY+ +
Sbjct: 184 LFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQF 243
Query: 281 FYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISG 340
+ T A G + +G + + + + +N L A + +
Sbjct: 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRI 303
Query: 341 MLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALL 400
+ + + F + + T T + +
Sbjct: 304 IGSSFATSALEVVILKTLHMFEVP----------FLLVGCFKYITSQFEVRFSATIYLVC 353
Query: 401 MCI-DILGSLISKWGGGIVLHLL 422
C L + G + +
Sbjct: 354 FCFFKQLAMIFMSVLAGNMYESI 376
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 492 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.27 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.19 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.1e-31 Score=261.75 Aligned_cols=373 Identities=12% Similarity=0.037 Sum_probs=252.6
Q ss_pred HhccCcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchh
Q 044122 34 SSQLHSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRP 112 (492)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~ 112 (492)
+++++|.++..+++.| +...++....+...| +++| +|+|.+|+|++.+++.+++.+ ++++|+++||+ +||+
T Consensus 19 ~~~~~w~i~~~~~~~~-~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~r~ 90 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGY-AAYYLVRKNFALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRV 90 (447)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHTSHHHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHH
T ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchH
Confidence 3556788877777766 444444444454555 5565 899999999999999999888 99999999996 7899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHH
Q 044122 113 YFVIAGVLGLVSALIVALLGKL--PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIG 190 (492)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg 190 (492)
.+..+.++..++.+++++.+.. ....+++.+++.+++.+...+...+++.|+.+ +++|++.+++.+.+..+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~i~ 168 (447)
T d1pw4a_ 91 FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS--QKERGGIVSVWNCAHNVGGGIP 168 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCT--TTHHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH--hhcccccccccccccchhhhhh
Confidence 9999999998888888775421 12235677889999999888888999999884 4679999999999999999999
Q ss_pred HHhHhHhhhc-CChHHHHHHHhHhHHHH-HHhhheeeeccCCCccch--h--hhh----H----HHHHHHHHHHHHhccc
Q 044122 191 YSSSGFFVHH-LGHQGALGILAIPPTLL-IVLGFVIYETRATSHHFE--K--KKA----I----ESVIFTMKGMCKSIKL 256 (492)
Q Consensus 191 ~~l~~~l~~~-~gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~--~--~~~----~----~~~~~~~~~~~~~l~~ 256 (492)
+.+++.+... .+||+.|++.+++.++. ++.+++.+|++++..... + ++. . ++........++.+++
T Consensus 169 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (447)
T d1pw4a_ 169 PLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPN 248 (447)
T ss_dssp HHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSC
T ss_pred hhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcC
Confidence 9998876664 47999999988887776 445555665543322110 0 000 0 0000111234566777
Q ss_pred ccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHH
Q 044122 257 PQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLY 336 (492)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~ 336 (492)
|.++......++..............+..+. .+++..+.+.......++.+++.++.+++.||.++++.........
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 325 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEV---KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 325 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccc---cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhH
Confidence 8777666555444433222222222333332 7899999999999999999999999999999998776554433333
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HHHHHHHHH
Q 044122 337 GISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDIL-GSLISKWGG 415 (492)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~~~l~ 415 (492)
....+....+. .....+.+.......+.++...........+..+..|++.+|++.|+.+...++ |..++|.+.
T Consensus 326 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~ 400 (447)
T d1pw4a_ 326 TLVTIATIVYW-----MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 400 (447)
T ss_dssp HHHHHHHHHTT-----SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111110 111112222222223333333344445556778999999999999999998887 456789999
Q ss_pred HHHHHhhcc
Q 044122 416 GIVLHLLHV 424 (492)
Q Consensus 416 g~l~~~~g~ 424 (492)
|++.|+.|+
T Consensus 401 g~~~~~~g~ 409 (447)
T d1pw4a_ 401 GYTVDFFGW 409 (447)
T ss_dssp HHHHHSSCS
T ss_pred HHHHHHhCh
Confidence 999998764
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.5e-27 Score=229.09 Aligned_cols=354 Identities=12% Similarity=0.055 Sum_probs=216.4
Q ss_pred cccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcC
Q 044122 54 GFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLG 132 (492)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~ 132 (492)
.+..+...+.+|.+++|++|+|++++|++.+++.++..+ +|++|+++||+ +||+.++++.....++..++...+
T Consensus 20 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-----grr~~l~~~~~~~~~~~~~~~~~~ 94 (417)
T d1pv7a_ 20 FFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLWIITGMLVMFAPFFIFI 94 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----TTCTHHHHHHHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHhh
Confidence 344455566788888888999999999999999999887 99999999996 677788888887777777777666
Q ss_pred CchHHH--HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHH
Q 044122 133 KLPIAL--ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGIL 210 (492)
Q Consensus 133 ~~~~~~--~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~ 210 (492)
+..... .+..+.+.+.+.+...........+...++.+++.+..+........+..+++.+++.+.+. +|+..+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 173 (417)
T d1pv7a_ 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLG 173 (417)
T ss_dssp HHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccch
Confidence 433211 11112222222221111222222222222223445566667788889999999999988765 455555554
Q ss_pred hHhHHHH-HHhhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCC
Q 044122 211 AIPPTLL-IVLGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKA 289 (492)
Q Consensus 211 ~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (492)
.....+. .+..+..+|++....+.++++..++ +.......+..+++..+......+...............+......
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (417)
T d1pv7a_ 174 SGCALILAVLLFFAKTDAPSSATVANAVGANHS-AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA 252 (417)
T ss_dssp HHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCC-CCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred hhHHHHHHHHHHHHhcccccchhhhhhhhhhcc-cccccccccccccccccchhhhhHHHHHHHHhhhcccccccccccc
Confidence 4444444 5566666666554433221110000 0011223334444444433322222221111111111122222222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
..+.+....+.......++..++..+.+++.||.++++.+..+..+..+..+. +. ..++.+..+....+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~l~ 322 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG---SS-------FATSALEVVILKTLH 322 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHH---HH-------TCCCHHHHHHHHHHH
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhc---cc-------cccccchhhHHHHHH
Confidence 24456666777778888999999999999999999999888776655543221 11 122333344444556
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLM-CIDILGSLISKWGGGIVLHLLHV 424 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~i~~~l~g~l~~~~g~ 424 (492)
++..+....+...+.++.+|++.+|+++|+.. ....+|..++|.+.|++.|+.|+
T Consensus 323 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~ 378 (417)
T d1pv7a_ 323 MFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 66667777778888999999999999999865 56679999999999999998874
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.4e-11 Score=118.89 Aligned_cols=128 Identities=12% Similarity=0.047 Sum_probs=98.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|+|+.+.|++.+...++..++.++.|++.||+|+|+.+..+.++..+..+.. .+... . .......+....+.
T Consensus 53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~-~~~~~--~---~~~~~~~~~~~~~~ 126 (447)
T d1pw4a_ 53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM-GFVPW--A---TSSIAVMFVLLFLC 126 (447)
T ss_dssp SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHCHH--H---HSSSSHHHHHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhc-cccch--h---hhhHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999988877666543321 11110 0 01222333334455
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
++..+....+...++.+..|+++|++++|+.+....+|..+++.+++.+.+..+
T Consensus 127 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 180 (447)
T d1pw4a_ 127 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180 (447)
T ss_dssp HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh
Confidence 556666677778889999999999999999999999999999999998887654
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=3.6e-11 Score=114.08 Aligned_cols=148 Identities=10% Similarity=0.019 Sum_probs=114.1
Q ss_pred cCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 044122 72 QKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIALALTCLIGITGGM 150 (492)
Q Consensus 72 ~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 150 (492)
.+.+....+...+...+...+ .++.+++.||+ +||+.+..+.++..++.+...+.++... .+...++.+++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~g~~~ 326 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFATSALE--VVILKTLHMFEV 326 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHTCCCHHH--HHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhccc-----ccccchhhhHHHHHHhhhccccccccch--hhHHHHHHHHHH
Confidence 344555666666666666555 88999999996 7888888888888888888888876543 445566778888
Q ss_pred HHHHhhhhhhhhhccccccCcccchHHHH-HHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH-HHhhheeeecc
Q 044122 151 AIADVVIDACIARNSIETRALAPDMQSLC-AFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL-IVLGFVIYETR 228 (492)
Q Consensus 151 ~~~~~~~~a~~~~~~~~~~~~r~~~~~~~-~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~-~~~~~~~~e~~ 228 (492)
+...+...+++.|..++ +.|++..+.. .....+|..++|.++|++.++.|++..|++.+++.++. ++..+.+++++
T Consensus 327 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 327 PFLLVGCFKYITSQFEV--RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHHSCG--GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 88888888888888844 5688888865 45677999999999999999999999999988887776 44555555443
|