Citrus Sinensis ID: 044155

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLSCN
Secondary Structure (PSIPRED)
cccccccccEEcEEccccEEEEEEEEcccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccccccHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEccccEEEEEEEcccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccHcHEEEcccccccHcHcccEEEccccccEEEEEEEcccccccHHHHHccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHccccHcccccccccHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
QMSHNHILKLIGccletpipilVFESVQYGtlwdrilgapqphfeplLLKHRLKIAMDIVHALAYlhfgfprpivfrnfktscilfneenVAKLFDFslsisipegethitdtvmgtlgycapeymrtgvfneksnVFSFSVFLFELltgwdvsdlvkdvhdlvcpfseylkncfednrftEIVDHIVVEDVSSIEKEQQLHASAQVTFEcikdspadrpsmVDVAKKLRQIYRSLSCN
Flexible Loop (DISEMBL)
QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECikdspadrpsmvDVAKKLRQIYRSLSCN
Low Complexity Region (SEG)
QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNvfsfsvflfellTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLSCN
Disordered region (IsUnstruct)
*****HILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEK***LHASAQVTFECI***************************
Disordered Region (DISOPRED)
QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS***********PFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ*YR*****
Disordered Region (DISEMBL)
QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLSCN
Disordered Region (DISPRO)
***HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLSCN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q9LMP1	732	Wall-associated receptor	yes	no	0.928	0.303	0.380	9e-39
Q9LSV3	433	Putative wall-associated	no	no	0.937	0.517	0.375	9e-39
Q9LMN7	733	Wall-associated receptor	no	no	0.924	0.301	0.391	1e-38
Q0WNY5	793	Wall-associated receptor	no	no	0.958	0.288	0.365	4e-38
Q9LMN8	741	Wall-associated receptor	no	no	0.937	0.302	0.379	4e-38
Q9LMN6	738	Wall-associated receptor	no	no	0.933	0.302	0.373	5e-38
Q9M092	786	Wall-associated receptor	no	no	0.958	0.291	0.357	8e-38
Q39191	735	Wall-associated receptor	no	no	0.928	0.302	0.376	6e-36
Q7X8C5	748	Wall-associated receptor	no	no	0.941	0.300	0.379	1e-34
Q9LMT9	764	Putative wall-associated	no	no	0.933	0.291	0.358	2e-34

>sp|Q9LMP1|WAK2_ARATH Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1

 Score =  160 bits (404), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 140/234 (59%), Gaps = 12/234 (5%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q++H +++K++GCCLET +P+LV+E +  GTL+D + G+   +   L  +HRL+IA ++ 
Sbjct: 454 QINHRNVVKVLGCCLETEVPLLVYEFINSGTLFDHLHGSL--YDSSLTWEHRLRIATEVA 511

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            +LAYLH     PI+ R+ KT+ IL ++   AK+ DF  S  IP  +  +T  V GTLGY
Sbjct: 512 GSLAYLHSSASIPIIHRDIKTANILLDKNLTAKVADFGASRLIPMDKEQLTTIVQGTLGY 571

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD--VHDLVCPFSEYLKNCFEDN 178
             PEY  TG+ NEKS+V+SF V L ELL+G       +     +LV  F+   KN    N
Sbjct: 572 LDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKALCFERPHCPKNLVSCFASATKN----N 627

Query: 179 RFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
           RF EI+D  V+ +    + ++++  +A++  EC +    +RP M +VA +L  +
Sbjct: 628 RFHEIIDGQVMNE----DNQREIQEAARIAAECTRLMGEERPRMKEVAAELEAL 677

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|Q9LSV3|WAKLS_ARATH Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1

 Score =  160 bits (404), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 87/232 (37%), Positives = 137/232 (59%), Gaps = 8/232 (3%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q++H +++KL+GCCLET +P+LV+E +  G+L+D + G+       L  +HRL+IA+++ 
Sbjct: 158 QINHRNVVKLLGCCLETEVPLLVYEFITGGSLFDHLHGSM--FVSSLTWEHRLEIAIEVA 215

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            A+AYLH G   PI+ R+ KT  IL +E   AK+ DF  S   P  +  +T  V GTLGY
Sbjct: 216 GAIAYLHSGASIPIIHRDIKTENILLDENLTAKVADFGASKLKPMDKEQLTTMVQGTLGY 275

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
             PEY  T + NEKS+V+SF V L EL++G     L  +  +       Y     ++NR 
Sbjct: 276 LDPEYYTTWLLNEKSDVYSFGVVLMELISGQKA--LCFERPETSKHLVSYFVLATKENRL 333

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
            EI+D  V+ +    E ++++H +A+V  EC +    +RP M++VA +L  +
Sbjct: 334 HEIIDDQVLNE----ENQREIHEAARVAVECTRLKGEERPRMIEVAAELETL 381

Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/235 (39%), Positives = 141/235 (60%), Gaps = 14/235 (5%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEP-LLLKHRLKIAMDI 59
           Q++H +++KL+GCCLET +P+LV+E +  GTL+D + G+    F+  L  +HRL+IA+++
Sbjct: 458 QINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDHLHGS---MFDSSLTWEHRLRIAIEV 514

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
              LAYLH     PI+ R+ KT+ IL +E   AK+ DF  S  IP  +  +T  V GTLG
Sbjct: 515 AGTLAYLHSYASIPIIHRDVKTANILLDENLTAKVADFGASRLIPMDQEQLTTMVQGTLG 574

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS--DLVKDVHDLVCPFSEYLKNCFED 177
           Y  PEY  TG+ NEKS+V+SF V L ELL+G      +  +    LV  F   +K    +
Sbjct: 575 YLDPEYYNTGLLNEKSDVYSFGVVLMELLSGEKALCFERPQSSKHLVSYFVSAMK----E 630

Query: 178 NRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
           NR  EI+D  V+ + +    ++++  SA++  EC +    +RPSM +VA +L  +
Sbjct: 631 NRLHEIIDGQVMNEYN----QREIQESARIAVECTRIMGEERPSMKEVAAELEAL 681

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q0WNY5|WAKLN_ARATH Wall-associated receptor kinase-like 18 OS=Arabidopsis thaliana GN=WAKL18 PE=2 SV=1

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 139/235 (59%), Gaps = 6/235 (2%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q++H H++KL+GCCLET +P+LV+E +  G L+  I       +  +L   RL+IA+DI 
Sbjct: 503 QINHRHVVKLLGCCLETEVPMLVYEFIINGNLFKHIHEEESDDY-TMLWGMRLRIAVDIA 561

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            AL+YLH     PI  R+ K++ IL +E+  AK+ DF  S S+   +TH T  + GT+GY
Sbjct: 562 GALSYLHSSASSPIYHRDIKSTNILLDEKYRAKVADFGTSRSVTIDQTHWTTVISGTVGY 621

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
             PEY ++  + EKS+V+SF V L EL+TG     +V++  ++V   +E+ +   ++ R 
Sbjct: 622 VDPEYYQSSQYTEKSDVYSFGVILAELITGDKPVIMVQNTQEIV-ALAEHFRVAMKEKRL 680

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
           T+I+D  +  D     K +Q+ A A+V  +C+      RP+M +V  +L +I  S
Sbjct: 681 TDIIDARIRNDC----KPEQVMAVAKVAMKCLSSKGKKRPNMREVFTELERICTS 731

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN8|WAK3_ARATH Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 135/232 (58%), Gaps = 8/232 (3%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q++H +++K++GCCLET +P+LV+E +  GTL+D + G+       L  +HRL+IA+++ 
Sbjct: 465 QINHRNVVKILGCCLETEVPLLVYEFITNGTLFDHLHGSIFD--SSLTWEHRLRIAIEVA 522

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             LAYLH     PI+ R+ KT+ IL +E   AK+ DF  S  IP  +  +T  V GTLGY
Sbjct: 523 GTLAYLHSSASIPIIHRDIKTANILLDENLTAKVADFGASKLIPMDKEQLTTMVQGTLGY 582

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
             PEY  TG+ NEKS+V+SF V L ELL+G     L  +          Y  +  E+NR 
Sbjct: 583 LDPEYYTTGLLNEKSDVYSFGVVLMELLSGQKA--LCFERPQASKHLVSYFVSATEENRL 640

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
            EI+D  V+ +    +  +++  +A++  EC +    +RP M +VA KL  +
Sbjct: 641 HEIIDDQVLNE----DNLKEIQEAARIAAECTRLMGEERPRMKEVAAKLEAL 688

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN6|WAK4_ARATH Wall-associated receptor kinase 4 OS=Arabidopsis thaliana GN=WAK4 PE=2 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/233 (37%), Positives = 137/233 (58%), Gaps = 10/233 (4%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEP-LLLKHRLKIAMDI 59
           Q++H +++KL+GCCLET +P+LV+E +  GTL+D + G+    F+  L  +HRL++A++I
Sbjct: 460 QINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDHLHGS---MFDSSLTWEHRLRMAVEI 516

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
              LAYLH     PI+ R+ KT+ IL +E   AK+ DF  S  IP  +  +   V GTLG
Sbjct: 517 AGTLAYLHSSASIPIIHRDIKTANILLDENLTAKVADFGASRLIPMDKEDLATMVQGTLG 576

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
           Y  PEY  TG+ NEKS+V+SF V L ELL+G     L  +          Y  +  ++NR
Sbjct: 577 YLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKA--LCFERPQTSKHIVSYFASATKENR 634

Query: 180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
             EI+D  V+ +      ++++  +A++  EC + +  +RP M +VA +L  +
Sbjct: 635 LHEIIDGQVMNE----NNQREIQKAARIAVECTRLTGEERPGMKEVAAELEAL 683

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9M092|WAKLM_ARATH Wall-associated receptor kinase-like 17 OS=Arabidopsis thaliana GN=WAKL17 PE=3 SV=2

 Score =  157 bits (396), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 140/235 (59%), Gaps = 6/235 (2%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q++H H++KL+GCCLET +PILV+E +  G L+  I       +  ++   RL+IA+DI 
Sbjct: 494 QINHRHVVKLLGCCLETEVPILVYEFIINGNLFKHIHEEEADDY-TMIWGMRLRIAVDIA 552

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            AL+YLH     PI  R+ K++ IL +E+  AK+ DF  S S+   +TH T  + GT+GY
Sbjct: 553 GALSYLHSAASSPIYHRDIKSTNILLDEKYRAKVADFGTSRSVTIDQTHWTTVISGTVGY 612

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
             PEY R+  + EKS+V+SF V L EL+TG     +V++  +++   +E+ +   ++ R 
Sbjct: 613 VDPEYYRSSQYTEKSDVYSFGVILAELITGDKPVIMVQNTQEII-ALAEHFRVAMKERRL 671

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
           ++I+D  + +D     K +Q+ A A +  +C+     +RP+M +V  +L +I  S
Sbjct: 672 SDIMDARIRDD----SKPEQVMAVANLAMKCLSSRGRNRPNMREVFTELERICTS 722

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2

 Score =  150 bits (380), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 88/234 (37%), Positives = 133/234 (56%), Gaps = 12/234 (5%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q++H +++KL+GCCLET +P+LV+E +  GTL+D + G+       L  +HRLKIA+++ 
Sbjct: 459 QINHRNVVKLLGCCLETEVPLLVYEFITNGTLFDHLHGSMID--SSLTWEHRLKIAIEVA 516

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             LAYLH     PI+ R+ KT+ IL +    AK+ DF  S  IP  +  +   V GTLGY
Sbjct: 517 GTLAYLHSSASIPIIHRDIKTANILLDVNLTAKVADFGASRLIPMDKEELETMVQGTLGY 576

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK--DVHDLVCPFSEYLKNCFEDN 178
             PEY  TG+ NEKS+V+SF V L ELL+G       +      LV  F+   K    +N
Sbjct: 577 LDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKALCFKRPQSSKHLVSYFATATK----EN 632

Query: 179 RFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
           R  EI+   V+ +    +  +++  +A++  EC +    +RP M +VA KL  +
Sbjct: 633 RLDEIIGGEVMNE----DNLKEIQEAARIAAECTRLMGEERPRMKEVAAKLEAL 682

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development. Required during plant's response to pathogen infection and in plant defense against heavy metal toxicity. Phosphorylates the oxygen-evolving enhancer protein 2 (OEE2) in an GRP-3-dependent manner.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q7X8C5|WAKLB_ARATH Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 133/237 (56%), Gaps = 12/237 (5%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q++H +I+KL+GCCLET +P+LV+E V  G L  R+      +   +  + RL IA++I 
Sbjct: 466 QINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLHDESDDY--TMTWEVRLHIAIEIA 523

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            AL+YLH     PI  R+ KT+ IL +E N AK+ DF  S S+   +TH+T  V GT GY
Sbjct: 524 GALSYLHSAASFPIYHRDIKTTNILLDERNRAKVSDFGTSRSVTIDQTHLTTQVAGTFGY 583

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD--LVCPFSEYLKNCFEDN 178
             PEY ++  F EKS+V+SF V L ELLTG   S  V+   +  L   F E +K    +N
Sbjct: 584 VDPEYFQSSKFTEKSDVYSFGVVLVELLTGEKPSSRVRSEENRGLAAHFVEAVK----EN 639

Query: 179 RFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
           R  +IVD  + ++ +      Q+ + A +   C+      RP+M +V+ +L  I  S
Sbjct: 640 RVLDIVDDRIKDECNM----DQVMSVANLARRCLNRKGKKRPNMREVSIELEMIRSS 692

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMT9|WAKLL_ARATH Putative wall-associated receptor kinase-like 13 OS=Arabidopsis thaliana GN=WAKL13 PE=2 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 130/234 (55%), Gaps = 11/234 (4%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE--PLLLKHRLKIAMD 58
           Q++H H++KL+GCCLET +PILV+E +  G L+  +       F+    L   R++IA+D
Sbjct: 504 QINHRHVVKLLGCCLETEVPILVYEFIPNGNLFQHL----HEEFDDYTALWGVRMRIAVD 559

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           I  A +YLH     PI  R+ K++ IL +E+  AK+ DF  S S+    TH T  + GT+
Sbjct: 560 ISGAFSYLHTAACSPIYHRDIKSTNILLDEKYRAKVSDFGTSRSVSIDHTHWTTVISGTV 619

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDN 178
           GY  PEY  +  F EKS+V+SF V L EL+TG      + +  ++    ++Y +    +N
Sbjct: 620 GYVDPEYYGSSHFTEKSDVYSFGVVLVELITGEKPVITLSETQEIT-GLADYFRLAMREN 678

Query: 179 RFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
           R  EI+D  +  D     K +Q+ A A +   C+K +   RP M +V+  L +I
Sbjct: 679 RLFEIIDARIRNDC----KLEQVIAVANLALRCLKKTGKTRPDMREVSTALERI 728

Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
255582635	331	receptor protein kinase, putative [Ricin	0.970	0.700	0.497	1e-58
224123144	344	predicted protein [Populus trichocarpa]	0.974	0.677	0.470	2e-55
255542662	330	serine-threonine protein kinase, plant-t	0.979	0.709	0.472	7e-52
255542656	331	serine-threonine protein kinase, plant-t	0.933	0.673	0.478	8e-50
255542658	356	serine-threonine protein kinase, plant-t	0.916	0.615	0.429	5e-48
255542668	307	serine-threonine protein kinase, plant-t	0.958	0.745	0.460	3e-46
359495254	331	PREDICTED: wall-associated receptor kina	0.958	0.691	0.413	1e-40
297740943	321	unnamed protein product [Vitis vinifera]	0.949	0.707	0.412	2e-40
297845102	735	hypothetical protein ARALYDRAFT_889580 [	0.933	0.303	0.394	1e-38
224065631	323	predicted protein [Populus trichocarpa]	0.933	0.690	0.420	3e-38

>gi|255582635|ref|XP_002532098.1| receptor protein kinase, putative [Ricinus communis] gi|223528232|gb|EEF30288.1| receptor protein kinase, putative [Ricinus communis]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 116/233 (49%), Positives = 158/233 (67%), Gaps = 1/233 (0%)

Query: 1   QMS-HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           QMS H + LKL+GCCLET IP+LVFE ++YGTL  R+ G  +  ++PLL +HRLKIA++I
Sbjct: 97  QMSKHKNFLKLLGCCLETQIPVLVFEPIEYGTLAGRLYGPNKTLYQPLLWRHRLKIAVEI 156

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
            +A++YLH  F RPIVFRN K   I  +E +VAKL DFSL++SIPEGE+H+ D + G  G
Sbjct: 157 ANAVSYLHTAFSRPIVFRNIKPLNIFLDECHVAKLSDFSLAVSIPEGESHVKDMLAGAWG 216

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
             APEY +T  FNE  +V++F VFL  LLTG  V D  +          +++K    D+R
Sbjct: 217 LIAPEYAKTSCFNESQDVYNFGVFLLMLLTGQKVVDSYRPQAGEELGLVDHVKKFIADDR 276

Query: 180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
           F E VD I++ + S  EK+QQL A   ++F CI ++  DRP M+DVAK+LR+I
Sbjct: 277 FYETVDSIILGEGSLPEKDQQLQAFTLLSFRCISEADEDRPMMIDVAKELRKI 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123144|ref|XP_002319005.1| predicted protein [Populus trichocarpa] gi|222857381|gb|EEE94928.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/236 (47%), Positives = 158/236 (66%), Gaps = 3/236 (1%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H   +KL+GCCLE  IPILVFE V   TL D + G+ +   +PLL   R KIAMD+ +A+
Sbjct: 108 HKSFMKLLGCCLEARIPILVFEYVGDWTLSDFLWGSEEARCQPLLWIPRSKIAMDMANAV 167

Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAP 123
           A+LH  F +PIVFRN K   IL ++ + AKL DFS+SISIP+GE+H+ D+V G  G  AP
Sbjct: 168 AFLHAAFSKPIVFRNIKPLNILLDDNHEAKLSDFSISISIPKGESHVRDSVAGATGLIAP 227

Query: 124 EYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEI 183
           EY+ TG FNEK +VF+F VFL  LL+G  V D  +   +++    +++K C ED+RF ++
Sbjct: 228 EYLTTGNFNEKQDVFNFGVFLLVLLSGQMVVDFSRPEKEIL--LQDHVKKCIEDDRFNKV 285

Query: 184 VDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS-LSC 238
           +D  ++ + +   KEQQL A   ++  CI +   DRP+M+DV+K+LR+IY S +SC
Sbjct: 286 IDSTIIAEGTWPGKEQQLQAYTALSLRCISELAEDRPTMIDVSKELRKIYWSAISC 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542662|ref|XP_002512394.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548355|gb|EEF49846.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 111/235 (47%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H + +KL+GCCLETP PILVFES +  TL DRI+     HFEP+  K RLKI  DI + +
Sbjct: 95  HINSIKLLGCCLETPSPILVFESAKEKTLADRIIDRNDDHFEPVKWKLRLKIVADIANVV 154

Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAP 123
            Y+H  FPRPIV RN K S IL +E+ VAKL DFSL +SIPEG++ + D + GT+G  A 
Sbjct: 155 VYIHTAFPRPIVHRNIKASNILLDEDYVAKLSDFSLCVSIPEGKSRVRDIMAGTMGLIAS 214

Query: 124 EYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEI 183
           E + TG FNEKS+V+SF V L  +LTG    D  +           ++K   E   F E+
Sbjct: 215 ESLATGYFNEKSDVYSFGVVLLVVLTGQRSFDFSRTETGEQFLLVNHVKKHIETGGFKEM 274

Query: 184 VDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLSC 238
           VD I+V + +   K Q+L     +   CI DS  +RP+M++VAK+LR IY S SC
Sbjct: 275 VDPIIVAEEAGNRKGQELEDFRDLALRCIHDSAEERPTMIEVAKQLRHIYLS-SC 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542656|ref|XP_002512391.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548352|gb|EEF49843.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 113/236 (47%), Positives = 143/236 (60%), Gaps = 13/236 (5%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H ++LKL+GCCLE+ IPI VFE  + GTL D +          LL K RLKIA+D+   +
Sbjct: 102 HRNVLKLLGCCLESEIPIPVFEYAEKGTLEDYVQKTA------LLWKDRLKIAVDVASVI 155

Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAP 123
           AYLH  FPRPIV R+   + IL +E+  AK+  FSLSISIPEGETHI D V GT+GY AP
Sbjct: 156 AYLHTAFPRPIVHRDISLASILLDEDCAAKVTGFSLSISIPEGETHIEDEVAGTIGYVAP 215

Query: 124 EYMRTGVFNEKSNVFSFSVFLFELLTGWD---VSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
           EY    +FNEK +V+SF V L  LLTG      S    + H LV      +KN     RF
Sbjct: 216 EYFMKRMFNEKIDVYSFGVVLLVLLTGHGPILRSPTTNESHALVVFVEAKIKN----ERF 271

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL 236
            EI+D  ++E+    EKEQQL +   +  +C +    DRP + DVAK+LR IY SL
Sbjct: 272 NEIIDPAILEEGPWPEKEQQLKSFLTLAMQCTRKDEEDRPEITDVAKQLRHIYHSL 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542658|ref|XP_002512392.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548353|gb|EEF49844.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 113/263 (42%), Positives = 144/263 (54%), Gaps = 44/263 (16%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H ++LKL+GCCLE+ IPILVFE  + G L D I       F PLL K RLKIA+D  + +
Sbjct: 105 HKNVLKLLGCCLESEIPILVFEYAEKGKLQDYIYKTDSASFRPLLWKSRLKIAVDAANVI 164

Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAP 123
           AYLH   PRP+V R+   S I  +E+ VAK+ DF++S+SI EGETHI D V+GT GY AP
Sbjct: 165 AYLHTACPRPVVHRDITLSNIWLDEDYVAKVTDFTVSMSILEGETHIEDFVLGTCGYAAP 224

Query: 124 EYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEI 183
           EY+R+G+FNEK +VFSF V L  LLT                PF    +N  +D RF EI
Sbjct: 225 EYVRSGIFNEKIDVFSFGVLLLVLLTDQK-------------PFQGNWENILKDARFDEI 271

Query: 184 -------------------------------VDHIVVEDVSSIEKEQQLHASAQVTFECI 212
                                          +D I+VE+    EKEQQL A   +  +CI
Sbjct: 272 IGSLIVEKGLWSEKEQLETFLTRTRQKLDLTIDPIIVEEGPWPEKEQQLKAFLMLGVQCI 331

Query: 213 KDSPADRPSMVDVAKKLRQIYRS 235
                +RP + DVAK+LR  Y S
Sbjct: 332 DPDEENRPEITDVAKQLRHFYLS 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542668|ref|XP_002512397.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548358|gb|EEF49849.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 147/239 (61%), Gaps = 10/239 (4%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H ++LKL+GCCLE+ IPILVFE  Q G L D            LL + RL+IA+D+   +
Sbjct: 75  HKNVLKLLGCCLESKIPILVFECAQKGILKDYFYKTDSAS---LLWQIRLRIAVDVASVI 131

Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAP 123
           +YLH  FPRPIV R+   S IL +E+ +AK+  FSLS+SIPEG+THI D V+GT GY AP
Sbjct: 132 SYLHSAFPRPIVHRDITLSNILLDEDYIAKVTGFSLSMSIPEGKTHIEDEVVGTPGYLAP 191

Query: 124 EYMRTGVFNEKSNVFSFSVFLFELLTGWDV---SDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            Y +T +FNEK +V+SF V L  LLTG      S      + LV     ++K   ED RF
Sbjct: 192 AYFKTLMFNEKIDVYSFGVLLLVLLTGQQPILHSPTTTARYSLV----NFVKEKIEDERF 247

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLSCN 239
            EI+D +++E+    EKE+QL     +  +C  ++  DRP + DVAK+LR IY SL  N
Sbjct: 248 DEIIDPVILEEGPWPEKERQLEIFLTLAMQCTHENEEDRPEITDVAKQLRHIYHSLISN 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495254|ref|XP_002271826.2| PREDICTED: wall-associated receptor kinase-like 8-like [Vitis vinifera]

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/237 (41%), Positives = 140/237 (59%), Gaps = 8/237 (3%)

Query: 1   QMS-HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           QMS H + LKL+GCCLET IPILV+E    G+L DRI   P P    L  K RL+IA DI
Sbjct: 99  QMSAHKNALKLLGCCLETRIPILVYEFPSGGSLIDRIFSPPNP----LSWKSRLRIAYDI 154

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
            + +AYLH  FPR I+  + K S    +++  AKL DFSLSI++PEGE H+ D + GT G
Sbjct: 155 ANVIAYLHIAFPRSIIHTDIKPSSFFLDQDCAAKLSDFSLSITLPEGEMHVEDEIRGTFG 214

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
           Y APE + +GV+ EK++VFSF + L ELL G     ++ +    +  +++   N ++ N 
Sbjct: 215 YLAPETLISGVYTEKNDVFSFGILLLELLIGKRAHSIMHEERASIQDYAQSFVNTYDIN- 273

Query: 180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL 236
              IVD I++     I +E Q  A   +   C      +RP++V+ AK++R+I   L
Sbjct: 274 --GIVDPIILAQPRGIHEELQFQAIFDLAMRCSMKDMDERPTIVNAAKEVRRIQNYL 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740943|emb|CBI31255.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 140/235 (59%), Gaps = 8/235 (3%)

Query: 1   QMS-HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           QMS H + LKL+GCCLET IPILV+E    G+L DRI   P P    L  K RL+IA DI
Sbjct: 91  QMSAHKNALKLLGCCLETRIPILVYEFPSGGSLIDRIFSPPNP----LSWKSRLRIAYDI 146

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
            + +AYLH  FPR I+  + K S    +++  AKL DFSLSI++PEGE H+ D + GT G
Sbjct: 147 ANVIAYLHIAFPRSIIHTDIKPSSFFLDQDCAAKLSDFSLSITLPEGEMHVEDEIRGTFG 206

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
           Y APE + +GV+ EK++VFSF + L ELL G     ++ +    +  +++   N ++ N 
Sbjct: 207 YLAPETLISGVYTEKNDVFSFGILLLELLIGKRAHSIMHEERASIQDYAQSFVNTYDIN- 265

Query: 180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR 234
              IVD I++     I +E Q  A   +   C      +RP++V+ AK++R+I +
Sbjct: 266 --GIVDPIILAQPRGIHEELQFQAIFDLAMRCSMKDMDERPTIVNAAKEVRRIQK 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845102|ref|XP_002890432.1| hypothetical protein ARALYDRAFT_889580 [Arabidopsis lyrata subsp. lyrata] gi|297336274|gb|EFH66691.1| hypothetical protein ARALYDRAFT_889580 [Arabidopsis lyrata subsp. lyrata]

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/233 (39%), Positives = 141/233 (60%), Gaps = 10/233 (4%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEP-LLLKHRLKIAMDI 59
           Q++H +++KL+GCCLET +P+LV+E +  GTL+D + G+    F+  L  +HRL+IA++I
Sbjct: 460 QINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDHLHGS---MFDSSLTWEHRLRIAIEI 516

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
              LAYLH     PI+ R+ KT+ IL +E   AK+ DF  S  IP  +  +T TV GTLG
Sbjct: 517 AGTLAYLHSSASIPIIHRDVKTANILLDENLTAKVADFGASRLIPMDQEQLTTTVQGTLG 576

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
           Y  PEY  TG+ NEKS+V+SF V L ELL+G     L  +          Y  +  ++NR
Sbjct: 577 YLDPEYYNTGLLNEKSDVYSFGVILMELLSGEKA--LCFERPQTSKHLVSYFVSAMKENR 634

Query: 180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
             EI+D  V+ + +    ++++  SA++  EC + +  +RPSM +VA +L  +
Sbjct: 635 LHEIIDGQVMNEYN----QREIRESARIALECTRITGEERPSMKEVATELEAL 683

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065631|ref|XP_002301893.1| predicted protein [Populus trichocarpa] gi|222843619|gb|EEE81166.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/238 (42%), Positives = 142/238 (59%), Gaps = 15/238 (6%)

Query: 3   SHNHILKLIGCCLETP-IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           SHN++LKL+GCCLE P  P LV+E  +  +L DR +     H+  L    RLKIA +I +
Sbjct: 97  SHNNVLKLLGCCLEIPEGPALVYEYPENRSL-DRHI-----HYGSLPWGTRLKIAKEIAN 150

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM-GTLGY 120
           A+AYLH  FPRPI+ R+ K + I  N+   AKL DFS SISIPEGE+ + D ++ GT G+
Sbjct: 151 AVAYLHTAFPRPIIHRDIKPANIFLNQNYAAKLSDFSFSISIPEGESKVGDDLLVGTFGF 210

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
             P+Y  T    EK++VFSF V L  LLTG        ++H       E++K   E +R 
Sbjct: 211 LDPDYTMTNFVTEKTDVFSFGVLLLVLLTGRATRQ--GEIH-----LIEHVKLLVEQDRV 263

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLSC 238
            E VD ++  +      +QQL AS ++   C  DS  DRP M++VAK++++I RS++ 
Sbjct: 264 HEAVDPMIRGNGGEAIDQQQLEASIELALRCTDDSGEDRPLMIEVAKEIQRIERSITA 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2094468	433	AT3G25490 [Arabidopsis thalian	0.937	0.517	0.344	2.9e-32
TAIR|locus:2014912	732	WAK2 "wall-associated kinase 2	0.920	0.300	0.347	1.3e-31
TAIR|locus:2014962	733	WAK5 "wall associated kinase 5	0.924	0.301	0.353	1.3e-31
TAIR|locus:2076671	355	AT3G57730 [Arabidopsis thalian	0.945	0.636	0.357	3.3e-31
TAIR|locus:2014897	741	WAK3 "wall associated kinase 3	0.933	0.300	0.347	6.1e-31
TAIR|locus:2126271	793	AT4G31110 [Arabidopsis thalian	0.958	0.288	0.336	1.2e-30
TAIR|locus:2014952	738	WAK4 "wall associated kinase 4	0.933	0.302	0.339	1.6e-30
TAIR|locus:2076596	340	AT3G57700 [Arabidopsis thalian	0.962	0.676	0.348	1.8e-30
TAIR|locus:2076586	351	AT3G57710 [Arabidopsis thalian	0.958	0.652	0.350	2.3e-30
TAIR|locus:2126316	786	AT4G31100 [Arabidopsis thalian	0.958	0.291	0.327	2.5e-30

TAIR|locus:2094468 AT3G25490 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 80/232 (34%), Positives = 128/232 (55%)

Query:     1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
             Q++H +++KL+GCCLET +P+LV+E +  G+L+D + G+       L  +HRL+IA+++ 
Sbjct:   158 QINHRNVVKLLGCCLETEVPLLVYEFITGGSLFDHLHGSM--FVSSLTWEHRLEIAIEVA 215

Query:    61 HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
              A+AYLH G   PI+ R+ KT  IL +E   AK+ DF  S   P  +  +T  V GTLGY
Sbjct:   216 GAIAYLHSGASIPIIHRDIKTENILLDENLTAKVADFGASKLKPMDKEQLTTMVQGTLGY 275

Query:   121 CAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
               PEY  T + NEKS+            +G     L  +  +       Y     ++NR 
Sbjct:   276 LDPEYYTTWLLNEKSDVYSFGVVLMELISGQKA--LCFERPETSKHLVSYFVLATKENRL 333

Query:   181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
              EI+D  V+ +    E ++++H +A+V  EC +    +RP M++VA +L  +
Sbjct:   334 HEIIDDQVLNE----ENQREIHEAARVAVECTRLKGEERPRMIEVAAELETL 381

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2014912 WAK2 "wall-associated kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 82/236 (34%), Positives = 134/236 (56%)

Query:     1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
             Q++H +++K++GCCLET +P+LV+E +  GTL+D + G+   +   L  +HRL+IA ++ 
Sbjct:   454 QINHRNVVKVLGCCLETEVPLLVYEFINSGTLFDHLHGSL--YDSSLTWEHRLRIATEVA 511

Query:    61 HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
              +LAYLH     PI+ R+ KT+ IL ++   AK+ DF  S  IP  +  +T  V GTLGY
Sbjct:   512 GSLAYLHSSASIPIIHRDIKTANILLDKNLTAKVADFGASRLIPMDKEQLTTIVQGTLGY 571

Query:   121 CAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCF----E 176
               PEY  TG+ NEKS+            +G       +  H   CP  + L +CF    +
Sbjct:   572 LDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKALCFERP-H---CP--KNLVSCFASATK 625

Query:   177 DNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
             +NRF EI+D  V+ +    + ++++  +A++  EC +    +RP M +VA +L  +
Sbjct:   626 NNRFHEIIDGQVMNE----DNQREIQEAARIAAECTRLMGEERPRMKEVAAELEAL 677

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0009311 "oligosaccharide metabolic process" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009992 "cellular water homeostasis" evidence=IMP;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2014962 WAK5 "wall associated kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 83/235 (35%), Positives = 132/235 (56%)

Query:     1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLL-KHRLKIAMDI 59
             Q++H +++KL+GCCLET +P+LV+E +  GTL+D + G+    F+  L  +HRL+IA+++
Sbjct:   458 QINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDHLHGSM---FDSSLTWEHRLRIAIEV 514

Query:    60 VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
                LAYLH     PI+ R+ KT+ IL +E   AK+ DF  S  IP  +  +T  V GTLG
Sbjct:   515 AGTLAYLHSYASIPIIHRDVKTANILLDENLTAKVADFGASRLIPMDQEQLTTMVQGTLG 574

Query:   120 YCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVS--DLVKDVHDLVCPFSEYLKNCFED 177
             Y  PEY  TG+ NEKS+            +G      +  +    LV     Y  +  ++
Sbjct:   575 YLDPEYYNTGLLNEKSDVYSFGVVLMELLSGEKALCFERPQSSKHLV----SYFVSAMKE 630

Query:   178 NRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
             NR  EI+D  V+ + +    ++++  SA++  EC +    +RPSM +VA +L  +
Sbjct:   631 NRLHEIIDGQVMNEYN----QREIQESARIAVECTRIMGEERPSMKEVAAELEAL 681

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2076671 AT3G57730 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 83/232 (35%), Positives = 127/232 (54%)

Query:     3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLL-LKHRLKIAMDIVH 61
             +HN+ LKL+GCCLE P P+LVFE  ++G L  R  G      E LL L  RLKI  +I +
Sbjct:   121 NHNNFLKLLGCCLEFPFPVLVFEFAEHGVLNYRG-GITVNGEESLLPLSLRLKIGKEIAN 179

Query:    62 ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHI-TDTVMGTLGY 120
             ALAYLH  FP+ I++R+ K   +  +    AKL D S SIS+ EG++ I  + V+GT GY
Sbjct:   180 ALAYLHMAFPKIIIYRDVKPLHVFLDNNWTAKLSDLSFSISLEEGKSQIEAEDVLGTYGY 239

Query:   121 CAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
               P Y  T +  E ++            TG  V     D + +      Y+K   E+ + 
Sbjct:   240 LDPLYFATRIVTEYTDVYSFGVFLMVVITGISVYFTGSDGYPV--GILGYMKGLAENGKL 297

Query:   181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
              EIV  +++++++S ++  Q+ A   +   C ++   DRP M+ VAK+L++I
Sbjct:   298 NEIVYPMIMKEMTSAQR-LQVEACVLLALRCCEERVEDRPKMIQVAKELKRI 348

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2014897 WAK3 "wall associated kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 6.1e-31, P = 6.1e-31
 Identities = 81/233 (34%), Positives = 128/233 (54%)

Query:     1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLL-KHRLKIAMDI 59
             Q++H +++K++GCCLET +P+LV+E +  GTL+D + G+    F+  L  +HRL+IA+++
Sbjct:   465 QINHRNVVKILGCCLETEVPLLVYEFITNGTLFDHLHGSI---FDSSLTWEHRLRIAIEV 521

Query:    60 VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
                LAYLH     PI+ R+ KT+ IL +E   AK+ DF  S  IP  +  +T  V GTLG
Sbjct:   522 AGTLAYLHSSASIPIIHRDIKTANILLDENLTAKVADFGASKLIPMDKEQLTTMVQGTLG 581

Query:   120 YCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
             Y  PEY  TG+ NEKS+            +G     L  +          Y  +  E+NR
Sbjct:   582 YLDPEYYTTGLLNEKSDVYSFGVVLMELLSGQKA--LCFERPQASKHLVSYFVSATEENR 639

Query:   180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
               EI+D  V+ +    +  +++  +A++  EC +    +RP M +VA KL  +
Sbjct:   640 LHEIIDDQVLNE----DNLKEIQEAARIAAECTRLMGEERPRMKEVAAKLEAL 688

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2126271 AT4G31110 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.2e-30, P = 1.2e-30
 Identities = 79/235 (33%), Positives = 130/235 (55%)

Query:     1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
             Q++H H++KL+GCCLET +P+LV+E +  G L+  I       +  +L   RL+IA+DI 
Sbjct:   503 QINHRHVVKLLGCCLETEVPMLVYEFIINGNLFKHIHEEESDDYT-MLWGMRLRIAVDIA 561

Query:    61 HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
              AL+YLH     PI  R+ K++ IL +E+  AK+ DF  S S+   +TH T  + GT+GY
Sbjct:   562 GALSYLHSSASSPIYHRDIKSTNILLDEKYRAKVADFGTSRSVTIDQTHWTTVISGTVGY 621

Query:   121 CAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
               PEY ++  + EKS+            TG     +V++  ++V   +E+ +   ++ R 
Sbjct:   622 VDPEYYQSSQYTEKSDVYSFGVILAELITGDKPVIMVQNTQEIVA-LAEHFRVAMKEKRL 680

Query:   181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
             T+I+D  +  D     K +Q+ A A+V  +C+      RP+M +V  +L +I  S
Sbjct:   681 TDIIDARIRNDC----KPEQVMAVAKVAMKCLSSKGKKRPNMREVFTELERICTS 731

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2014952 WAK4 "wall associated kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 79/233 (33%), Positives = 128/233 (54%)

Query:     1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLL-KHRLKIAMDI 59
             Q++H +++KL+GCCLET +P+LV+E +  GTL+D + G+    F+  L  +HRL++A++I
Sbjct:   460 QINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDHLHGSM---FDSSLTWEHRLRMAVEI 516

Query:    60 VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
                LAYLH     PI+ R+ KT+ IL +E   AK+ DF  S  IP  +  +   V GTLG
Sbjct:   517 AGTLAYLHSSASIPIIHRDIKTANILLDENLTAKVADFGASRLIPMDKEDLATMVQGTLG 576

Query:   120 YCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
             Y  PEY  TG+ NEKS+            +G     L  +          Y  +  ++NR
Sbjct:   577 YLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKA--LCFERPQTSKHIVSYFASATKENR 634

Query:   180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
               EI+D  V+ +      ++++  +A++  EC + +  +RP M +VA +L  +
Sbjct:   635 LHEIIDGQVMNE----NNQREIQKAARIAVECTRLTGEERPGMKEVAAELEAL 683

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2076596 AT3G57700 [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 83/238 (34%), Positives = 123/238 (51%)

Query:     3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
             SH ++LKL+GCCLE P P+LV E  ++G L    +   +          RL+IA +I  A
Sbjct:   107 SHKNVLKLLGCCLEFPRPVLVCEYPEHGAL--NCIRCGKEGVRSFPWNVRLRIAKEIADA 164

Query:    63 LAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCA 122
             +AYLH  FPR I+ R+ K + I  +E   AKL  FSLSI +PEGET + D V  T  Y  
Sbjct:   165 VAYLHTEFPRTIIHRDLKLANIFLDENWSAKLSSFSLSIVLPEGETGVNDMVCRTSSYIE 224

Query:   123 PEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTE 182
             P+Y  TG+  E  +            TG    +    V+  V P   Y+    E    TE
Sbjct:   225 PDYFNTGLVTENVDIYSLGIIMLIILTGKSEYNSEVAVYLPVLPV--YVGKFLERGLLTE 282

Query:   183 IVDHIVVEDVSS-IEKEQQLHASA--QVTFECIKDSPADR-PSMVDVAKKLRQIYRSL 236
             ++D  +++  S  I K  +L   A  ++ F C++  P +  P M+DVAK+L++I + +
Sbjct:   283 LIDPSILDSTSDDIPKHSRLQMEAFIELAFRCVRFRPGENVPRMIDVAKELKKIEKHI 340

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2076586 AT3G57710 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 83/237 (35%), Positives = 129/237 (54%)

Query:     3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKH--RLKIAMDIV 60
             +H++ L+L+GCCLE P P+LVFE  ++G +  R  G    + E  LL    RLKI  +I 
Sbjct:   116 NHSNFLQLLGCCLEFPFPVLVFEFAEHGAMNQR--GGVIVNGEESLLPWSVRLKIGKEIA 173

Query:    61 HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHI-TDTVMGTLG 119
             +A+ YLH  FP+ I+ R+ K   +  ++   AKL D S SIS+PEG++ I  + V+GT G
Sbjct:   174 NAVTYLHTAFPKIIIHRDVKPMHVFLDKNWTAKLSDLSFSISLPEGKSRIEAEWVLGTFG 233

Query:   120 YCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
             Y  P Y +T    E ++            TG      + D  DL    S   + C E+ +
Sbjct:   234 YIDPLYHKTCFVTEYTDVYSFGICLLVIITGKPAIMTISD-GDLQGILSLVRELC-ENGK 291

Query:   180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL 236
               E++D  +++D++S ++  Q+ A   +   C K+   DRP M+ VAK+L+QI  SL
Sbjct:   292 LDEVIDPRLMKDITSGQR-LQVEACVVLALRCCKERDEDRPKMIQVAKELKQIEASL 347

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2126316 AT4G31100 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.5e-30, P = 2.5e-30
 Identities = 77/235 (32%), Positives = 131/235 (55%)

Query:     1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
             Q++H H++KL+GCCLET +PILV+E +  G L+  I       +  ++   RL+IA+DI 
Sbjct:   494 QINHRHVVKLLGCCLETEVPILVYEFIINGNLFKHIHEEEADDYT-MIWGMRLRIAVDIA 552

Query:    61 HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
              AL+YLH     PI  R+ K++ IL +E+  AK+ DF  S S+   +TH T  + GT+GY
Sbjct:   553 GALSYLHSAASSPIYHRDIKSTNILLDEKYRAKVADFGTSRSVTIDQTHWTTVISGTVGY 612

Query:   121 CAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
               PEY R+  + EKS+            TG     +V++  +++   +E+ +   ++ R 
Sbjct:   613 VDPEYYRSSQYTEKSDVYSFGVILAELITGDKPVIMVQNTQEIIA-LAEHFRVAMKERRL 671

Query:   181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
             ++I+D  + +D     K +Q+ A A +  +C+     +RP+M +V  +L +I  S
Sbjct:   672 SDIMDARIRDD----SKPEQVMAVANLAMKCLSSRGRNRPNMREVFTELERICTS 722

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_XIII000087 hypothetical protein (344 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-25
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-25
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	9e-25
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	9e-23
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-22
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-18
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	8e-16
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-15
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	4e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-14
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	4e-14
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	3e-13
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	6e-13
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	7e-13
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	9e-13
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-12
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	2e-12
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	2e-12
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	7e-12
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	9e-12
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	3e-11
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	6e-11
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	2e-10
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	2e-10
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	3e-10
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	7e-10
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	2e-09
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-09
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	3e-09
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	3e-09
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-09
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	4e-09
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	4e-09
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	8e-09
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	1e-08
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	1e-08
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	1e-08
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	1e-08
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	1e-08
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	1e-08
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-08
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	3e-08
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	3e-08
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	4e-08
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	4e-08
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	4e-08
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	4e-08
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	4e-08
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	5e-08
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	8e-08
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	9e-08
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	9e-08
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	1e-07
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	1e-07
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	1e-07
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	1e-07
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	1e-07
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-07
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	2e-07
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	2e-07
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-07
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	2e-07
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-07
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	2e-07
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	2e-07
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	2e-07
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	3e-07
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-07
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	3e-07
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	3e-07
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	3e-07
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	4e-07
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	4e-07
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	5e-07
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	5e-07
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	5e-07
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	7e-07
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	8e-07
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	1e-06
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	1e-06
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	1e-06
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	1e-06
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	1e-06
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	1e-06
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-06
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	1e-06
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	1e-06
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	1e-06
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-06
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	2e-06
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	2e-06
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	2e-06
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	3e-06
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	3e-06
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	4e-06
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	4e-06
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	5e-06
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	6e-06
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	6e-06
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	6e-06
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	7e-06
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	7e-06
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	7e-06
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	8e-06
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	8e-06
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	8e-06
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	8e-06
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	9e-06
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	1e-05
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	1e-05
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-05
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-05
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	2e-05
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	2e-05
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	2e-05
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	2e-05
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	2e-05
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	2e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	2e-05
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	2e-05
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	2e-05
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	3e-05
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	3e-05
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	3e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	3e-05
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	4e-05
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	4e-05
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	4e-05
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	6e-05
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	6e-05
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	6e-05
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	6e-05
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	8e-05
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	9e-05
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	1e-04
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-04
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-04
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	1e-04
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	2e-04
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	2e-04
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	2e-04
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	2e-04
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	2e-04
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	2e-04
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	2e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	2e-04
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	2e-04
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	2e-04
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	2e-04
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	2e-04
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	3e-04
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	3e-04
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	3e-04
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	3e-04
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	4e-04
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	4e-04
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	4e-04
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	4e-04
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	5e-04
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	5e-04
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	5e-04
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	5e-04
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	5e-04
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	6e-04
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	6e-04
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	7e-04
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	8e-04
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	0.001
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	0.001
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	0.001
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	0.001
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.001
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	0.001
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	0.001
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.001
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	0.001
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	0.001
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	0.001
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	0.001
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	0.002
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	0.002
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	0.002
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	0.002
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	0.002
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	0.003
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.003
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	0.003
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	0.003
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	0.004
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	0.004
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	0.004

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score =  100 bits (251), Expect = 1e-25
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 30/230 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H +++KL+G C E     +V E ++ G L    L   +P    L L   L  A+ I 
Sbjct: 57  KLDHPNVVKLLGVCTEEEPLYIVMEYMEGGDL-LSYLRKNRPK---LSLSDLLSFALQIA 112

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             + YL     +  + R+      L  E  V K+ DF LS  + + + +        + +
Sbjct: 113 RGMEYLES---KNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIRW 169

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            APE ++ G F  KS+V+SF V L+E+ T  +         +++    EYLKN     R 
Sbjct: 170 MAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVL----EYLKN---GYR- 221

Query: 181 TEIVDHIVVEDVSSIEKEQQLHAS-AQVTFECIKDSPADRPSMVDVAKKL 229
                         + +          +  +C  + P DRP+  ++ + L
Sbjct: 222 --------------LPQPPNCPPELYDLMLQCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score =   99 bits (250), Expect = 2e-25
 Identities = 58/249 (23%), Positives = 100/249 (40%), Gaps = 57/249 (22%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWD----RILGAPQPHFEPLLLKHRLKIA 56
           ++ H ++++L+G C E     LV E ++ G L D         P P    L LK  L  A
Sbjct: 52  KLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFA 111

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG 116
           + I   + YL     +  V R+      L  E+ V K+ DF LS  + + +         
Sbjct: 112 IQIAKGMEYLAS---KKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDD----YYRKK 164

Query: 117 TLG-----YCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD-- 162
           T G     + APE ++ G+F  KS+V+SF V L+E+ T       G    ++++ +    
Sbjct: 165 TGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGY 224

Query: 163 -LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS 221
            L  P     + C ++    E++                          C +  P DRP+
Sbjct: 225 RLPKP-----EYCPDE--LYELM------------------------LSCWQLDPEDRPT 253

Query: 222 MVDVAKKLR 230
             ++ ++L 
Sbjct: 254 FSELVERLE 262

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 98.0 bits (245), Expect = 9e-25
 Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 29/230 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H +I+KL+G C E    ++V E +  G L    L   +P    L L   L  A+ I 
Sbjct: 57  KLDHPNIVKLLGVCTEEEPLMIVMEYMPGGDL-LDYLRKNRPKE--LSLSDLLSFALQIA 113

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             + YL     +  + R+      L  E  V K+ DF LS  + + + +        + +
Sbjct: 114 RGMEYLES---KNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRW 170

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            APE ++ G F  KS+V+SF V L+E+ T  +         +++    EYLK      R 
Sbjct: 171 MAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEEPYPGMSNAEVL----EYLKK---GYR- 222

Query: 181 TEIVDHIVVEDVSSIEKEQQLHAS-AQVTFECIKDSPADRPSMVDVAKKL 229
                         + K         ++  +C  + P DRP+  ++ + L
Sbjct: 223 --------------LPKPPNCPPELYKLMLQCWAEDPEDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 93.0 bits (232), Expect = 9e-23
 Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 16/155 (10%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++SH +I++L+G C +     +V E +  G L D +    + H E L LK  L++A+ I 
Sbjct: 57  KLSHPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFL----RKHGEKLTLKDLLQMALQIA 112

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             + YL     +  V R+      L  E  V K+ DF LS  I E +           G 
Sbjct: 113 KGMEYLES---KNFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDY----YRKRGGGK 165

Query: 121 -----CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
                 APE ++ G F  KS+V+SF V L+E+ T 
Sbjct: 166 LPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTL 200

Length = 258

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 91.5 bits (228), Expect = 1e-22
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 10/149 (6%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           +++H +I+KL G   +     LV E  + G+L D +    + +   L     L+I + I+
Sbjct: 47  KLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLL----KENEGKLSEDEILRILLQIL 102

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLG 119
             L YLH      I+ R+ K   IL + +N   KL DF LS  +   +  +  T++GT  
Sbjct: 103 EGLEYLHS---NGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDK-SLLKTIVGTPA 158

Query: 120 YCAPE-YMRTGVFNEKSNVFSFSVFLFEL 147
           Y APE  +  G ++EKS+++S  V L+EL
Sbjct: 159 YMAPEVLLGKGYYSEKSDIWSLGVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 80.7 bits (200), Expect = 3e-18
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 10/150 (6%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H +I++L     +     LV E  + G L+D +    +        +        I+
Sbjct: 53  KLKHPNIVRLYDVFEDEDKLYLVMEYCEGGDLFDLLK--KRGRLSEDEARF---YLRQIL 107

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            AL YLH    + IV R+ K   IL +E+   KL DF L+  +  GE     T +GT  Y
Sbjct: 108 SALEYLH---SKGIVHRDLKPENILLDEDGHVKLADFGLARQLDPGEK--LTTFVGTPEY 162

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            APE +    + +  +++S  V L+ELLTG
Sbjct: 163 MAPEVLLGKGYGKAVDIWSLGVILYELLTG 192

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 73.8 bits (182), Expect = 8e-16
 Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 10/150 (6%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           +SH +I++LI    +     LV E  + G L+D +             K   KIA+ I+ 
Sbjct: 55  LSHPNIVRLIDAFEDKDHLYLVMEYCEGGDLFDYLS--RGGPLSEDEAK---KIALQILR 109

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYC 121
            L YLH      I+ R+ K   IL +E  V K+ DF L+       +    T +GT  Y 
Sbjct: 110 GLEYLH---SNGIIHRDLKPENILLDENGVVKIADFGLA-KKLLKSSSSLTTFVGTPWYM 165

Query: 122 APEYMRTG-VFNEKSNVFSFSVFLFELLTG 150
           APE +  G  +  K +V+S  V L+ELLTG
Sbjct: 166 APEVLLGGNGYGPKVDVWSLGVILYELLTG 195

Length = 260

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 73.6 bits (179), Expect = 3e-15
 Identities = 54/237 (22%), Positives = 85/237 (35%), Gaps = 30/237 (12%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
              +I+KL     +     LV E V  G+L D +         PL     L I   I+ A
Sbjct: 56  HPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLL--KKIGRKGPLSESEALFILAQILSA 113

Query: 63  LAYLHFGFPRPIVFRNFKTSCILFNEE-NVAKLFDFSLSISIPEGETH-----ITDTVMG 116
           L YLH    + I+ R+ K   IL + +  V KL DF L+  +P+  +      +  T +G
Sbjct: 114 LEYLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVG 170

Query: 117 TLGYCAPEYMRTGVFNE---KSNVFSFSVFLFELLTG---WDVSDLVKDVHDLVCPFSEY 170
           T GY APE +           S+++S  + L+ELLTG   ++           +    E 
Sbjct: 171 TPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILEL 230

Query: 171 LKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK 227
                         + I       ++K              +   P +R S      
Sbjct: 231 PTPSLASPLSPSNPELISKAASDLLKK-------------LLAKDPKNRLSSSSDLS 274

Length = 384

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 72.4 bits (178), Expect = 4e-15
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 11/152 (7%)

Query: 2   MSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H +I+K  G C +       L+ E +  G+L D +    Q H + + LK  L  +  I
Sbjct: 63  LDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYL----QRHRDQINLKRLLLFSSQI 118

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
              + YL     +  + R+     IL   E++ K+ DF L+  +PE + +      G   
Sbjct: 119 CKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESP 175

Query: 120 --YCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
             + APE +RT  F+  S+V+SF V L+EL T
Sbjct: 176 IFWYAPECLRTSKFSSASDVWSFGVTLYELFT 207

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.4 bits (175), Expect = 2e-14
 Identities = 63/237 (26%), Positives = 99/237 (41%), Gaps = 19/237 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H +I+KLIG C       L+ E ++   L + +          L  + R KIA+ I 
Sbjct: 739 KLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN--------LSWERRRKIAIGIA 790

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            AL +LH      +V  N     I+ + ++   L      +S+P G          +  Y
Sbjct: 791 KALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHL-----RLSLP-GLLCTDTKCFISSAY 844

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            APE   T    EKS+++ F + L ELLTG   +D    VH  +  ++ Y   C+ D   
Sbjct: 845 VAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARY---CYSDCHL 901

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLS 237
              +D  +  DV S+ + + +     +   C    P  RP   DV K L    RS S
Sbjct: 902 DMWIDPSIRGDV-SVNQNEIVEV-MNLALHCTATDPTARPCANDVLKTLESASRSSS 956

Length = 968

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 9/150 (6%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H ++++L G  L  P+ ++V E    G+L DR+    +      L+      A+ I +
Sbjct: 53  LDHENLIRLYGVVLTHPL-MMVTELAPLGSLLDRL---RKDALGHFLISTLCDYAVQIAN 108

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL--G 119
            + YL     +  + R+     IL   ++  K+ DF L  ++P+ E H        +   
Sbjct: 109 GMRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFA 165

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           +CAPE +RT  F+  S+V+ F V L+E+ T
Sbjct: 166 WCAPESLRTRTFSHASDVWMFGVTLWEMFT 195

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 66.8 bits (164), Expect = 3e-13
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 9/150 (6%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           +  H +I+K  G  L+     +V E    G+L D +    Q   E  +      +  +++
Sbjct: 53  KCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAY----VCKELL 108

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             L YLH      I+ R+ K + IL   +   KL DF LS  + + +    +T++GT  +
Sbjct: 109 KGLEYLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA--RNTMVGTPYW 163

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            APE +    ++ K++++S  +   EL  G
Sbjct: 164 MAPEVINGKPYDYKADIWSLGITAIELAEG 193

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 65.9 bits (161), Expect = 6e-13
 Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 33/203 (16%)

Query: 30  GTLWDRILGAPQPHFEPLLLKHRLKIAM--DIVHALAYLHFGFPRPIVFRNFKTSCILFN 87
           GTL+D+I+      FE       + +     IV A++Y+H      I+ R+ KT  I   
Sbjct: 84  GTLYDKIVRQKGQLFE-----EEMVLWYLFQIVSAVSYIH---KAGILHRDIKTLNIFLT 135

Query: 88  EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFEL 147
           +  + KL DF +S  I   E  + +TV+GT  Y +PE  +   +N KS++++    L+EL
Sbjct: 136 KAGLIKLGDFGIS-KILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYEL 194

Query: 148 LTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQV 207
           LT                     LK  F+      +V  I V+   +            +
Sbjct: 195 LT---------------------LKRTFDATNPLNLVVKI-VQGNYTPVVSVYSSELISL 232

Query: 208 TFECIKDSPADRPSMVDVAKKLR 230
               ++  P  RP+  +V  +  
Sbjct: 233 VHSLLQQDPEKRPTADEVLDQPL 255

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 65.9 bits (161), Expect = 7e-13
 Identities = 56/246 (22%), Positives = 97/246 (39%), Gaps = 46/246 (18%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWD---------RILGAPQPHFEPLLLKHR 52
             H +I+K  G C E   PI+VFE +++G L             L +P      L L   
Sbjct: 65  FQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQL 124

Query: 53  LKIAMDIVHALAYL---HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH 109
           L+IA+ I   + YL   HF      V R+  T   L   + V K+ DF +S  +   + +
Sbjct: 125 LQIAVQIASGMVYLASQHF------VHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYY 178

Query: 110 -ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFS 168
            +    M  + +  PE +    F  +S+V+SF V L+E+ T                   
Sbjct: 179 RVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFT------------------- 219

Query: 169 EYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASA---QVTFECIKDSPADRPSMVDV 225
            Y K  +      E+++ I          ++     +    +   C K  P  R ++ D+
Sbjct: 220 -YGKQPWYGLSNEEVIECI----TQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDI 274

Query: 226 AKKLRQ 231
            ++L++
Sbjct: 275 HERLQK 280

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 65.3 bits (160), Expect = 9e-13
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 11/153 (7%)

Query: 1   QMSHNHILKLIGCCL-ETPIPILVF-ESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMD 58
            + H +I++  G    E    + +F E V  G+L   +           +++   +    
Sbjct: 55  SLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLL--KKFGKLPEPVIRKYTR---Q 109

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGT 117
           I+  LAYLH      IV R+ K + IL + + V KL DF  +  + + ET   T +V GT
Sbjct: 110 ILEGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGT 166

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
             + APE +R   +   ++++S    + E+ TG
Sbjct: 167 PYWMAPEVIRGEEYGRAADIWSLGCTVIEMATG 199

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 10/147 (6%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + H ++++L+G  L+     +V E +  G+L D +    +       L  +L  A+D+ 
Sbjct: 56  TLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVIT---LAQQLGFALDVC 112

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             + YL     +  V R+     +L +E+ VAK+ DF L+    +  +   D+    + +
Sbjct: 113 EGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLA----KEASQGQDSGKLPVKW 165

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFEL 147
            APE +R   F+ KS+V+SF + L+E+
Sbjct: 166 TAPEALREKKFSTKSDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 17/162 (10%)

Query: 6   HILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAY 65
           +I+   G  L      +  E +  G+L DRI         P+ ++   KIA+ +V  L Y
Sbjct: 64  YIVSFYGAFLNENNICMCMEFMDCGSL-DRIY----KKGGPIPVEILGKIAVAVVEGLTY 118

Query: 66  LHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGTLGYCAP 123
           L+      I+ R+ K S IL N     KL DF +S     GE    I DT +GT  Y +P
Sbjct: 119 LYN--VHRIMHRDIKPSNILVNSRGQIKLCDFGVS-----GELINSIADTFVGTSTYMSP 171

Query: 124 EYMRTGVFNEKSNVFSFSVFLFELLTG---WDVSDLVKDVHD 162
           E ++ G +  KS+V+S  + + EL  G   +  S++  D  D
Sbjct: 172 ERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQD 213

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 13/155 (8%)

Query: 2   MSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H +I+K  GCC E       L+ E V  G+L D +   P+     L L   L  A  I
Sbjct: 63  LYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYL---PK---HKLNLAQLLLFAQQI 116

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGT 117
              +AYLH    +  + R+     +L + + + K+ DF L+ ++PEG  +  + +     
Sbjct: 117 CEGMAYLH---SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSP 173

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWD 152
           + + A E ++   F+  S+V+SF V L+ELLT  D
Sbjct: 174 VFWYAVECLKENKFSYASDVWSFGVTLYELLTHCD 208

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 63.3 bits (154), Expect = 7e-12
 Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 19/158 (12%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEP--LLLKHRLKIAMDIVH 61
           H +I+KL+G CL      ++ E ++ G L   +  A    F P  L LK  L I +D+  
Sbjct: 58  HPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAK 117

Query: 62  ALAYL---HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI-------PEGETHIT 111
              YL   HF   R +  RN   S   ++ + V K+ DF L+  I        EGE  + 
Sbjct: 118 GCVYLEQMHF-IHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLP 176

Query: 112 DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
              M      APE +  G F  +S+V+SF V ++E+LT
Sbjct: 177 VRWM------APESLLDGKFTTQSDVWSFGVLMWEILT 208

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 62.8 bits (153), Expect = 9e-12
 Identities = 59/250 (23%), Positives = 96/250 (38%), Gaps = 60/250 (24%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-PHFEPLLLKHRLKIAMDI 59
           Q+ H  I++LIG C   P+ +LV E    G L   +    + P  +   L H++ + M  
Sbjct: 52  QLDHPCIVRLIGVCKGEPL-MLVMELAPLGPLLKYLKKRREIPVSDLKELAHQVAMGM-- 108

Query: 60  VHALAYL---HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG 116
               AYL   HF      V R+     +L    + AK+ DF +S ++  G  +   T  G
Sbjct: 109 ----AYLESKHF------VHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAG 158

Query: 117 T--LGYCAPEYMRTGVFNEKSNVFSFSVFLFEL----------LTGWDVSDLVKDVHDLV 164
              L + APE +  G F+ KS+V+S+ V L+E           + G +V  +++    L 
Sbjct: 159 RWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGERLP 218

Query: 165 CPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD 224
            P     + C            I                   +   C K  P DRP+  +
Sbjct: 219 RP-----EEC---------PQEIY-----------------SIMLSCWKYRPEDRPTFSE 247

Query: 225 VAKKLRQIYR 234
           +    R+   
Sbjct: 248 LESTFRRDPE 257

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 61.5 bits (149), Expect = 3e-11
 Identities = 54/264 (20%), Positives = 101/264 (38%), Gaps = 68/264 (25%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTL-----WDRILGAP--------------Q 41
           Q++H H++KL G C +    +L+ E  +YG+L       R +G                 
Sbjct: 59  QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDN 118

Query: 42  PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSI 101
           P    L +   +  A  I   + YL       +V R+     +L  E    K+ DF LS 
Sbjct: 119 PDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLAARNVLVAEGRKMKISDFGLSR 175

Query: 102 SIPEGETHIT---DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT--------- 149
            + E ++++      +   + + A E +   ++  +S+V+SF V L+E++T         
Sbjct: 176 DVYEEDSYVKRSKGRI--PVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI 233

Query: 150 -GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVT 208
               + +L+K  + +  P     +NC E                              + 
Sbjct: 234 APERLFNLLKTGYRMERP-----ENCSE--------------------------EMYNLM 262

Query: 209 FECIKDSPADRPSMVDVAKKLRQI 232
             C K  P  RP+  D++K+L ++
Sbjct: 263 LTCWKQEPDKRPTFADISKELEKM 286

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 60.4 bits (146), Expect = 6e-11
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 22/163 (13%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE-----------PLLLK 50
           + H HI++  G C E    ++VFE +++G L +R L +  P  +            L L 
Sbjct: 64  LQHQHIVRFYGVCTEGRPLLMVFEYMRHGDL-NRFLRSHGPDAKILAGGEDVAPGQLTLG 122

Query: 51  HRLKIAMDIVHALAY---LHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE 107
             L IA  I   + Y   LHF      V R+  T   L  +  V K+ DF +S  I   +
Sbjct: 123 QMLAIASQIASGMVYLASLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTD 176

Query: 108 TH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            + +    M  + +  PE +    F  +S+++SF V L+E+ T
Sbjct: 177 YYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFT 219

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 11/148 (7%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q+ H+++++L+G  +E    + +V E +  G+L D +    +       L   LK ++D+
Sbjct: 55  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL---LKFSLDV 111

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
             A+ YL        V R+     +L +E+NVAK+ DF L+    +  +   DT    + 
Sbjct: 112 CEAMEYLE---ANNFVHRDLAARNVLVSEDNVAKVSDFGLT----KEASSTQDTGKLPVK 164

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFEL 147
           + APE +R   F+ KS+V+SF + L+E+
Sbjct: 165 WTAPEALREKKFSTKSDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 58.8 bits (142), Expect = 2e-10
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 38/226 (16%)

Query: 1   QMSHNHILKLIGCCLE-TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           ++SH  +++L G C E +PI  LVFE +++G L D  L A +  F    L   L + +D+
Sbjct: 55  KLSHPKLVQLYGVCTERSPI-CLVFEFMEHGCLSD-YLRAQRGKFSQETL---LGMCLDV 109

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
              +AYL       ++ R+      L  E  V K+ DF ++  + + +   +      + 
Sbjct: 110 CEGMAYLE---SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVK 166

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
           + +PE      ++ KS+V+SF V ++E+                   FSE  K  +E+  
Sbjct: 167 WSSPEVFSFSKYSSKSDVWSFGVLMWEV-------------------FSEG-KTPYENRS 206

Query: 180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTFE----CIKDSPADRPS 221
            +E     VVE +++  +  +   ++Q  +E    C K+ P DRPS
Sbjct: 207 NSE-----VVETINAGFRLYKPRLASQSVYELMQHCWKERPEDRPS 247

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
            A +IV AL YLH      I++R+ K   IL + +   KL DF L+  +    +  T+T 
Sbjct: 98  YAAEIVLALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSR-TNTF 153

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            GT  Y APE +    + +  + +S  V L+E+LTG
Sbjct: 154 CGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTG 189

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 57.5 bits (139), Expect = 7e-10
 Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 52  RLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT 111
           R+ IA +IV AL +LH      I++R+ K   IL + E    L DF LS      E    
Sbjct: 108 RVYIA-EIVLALDHLH---QLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERA 163

Query: 112 DTVMGTLGYCAPEYMRTGVFNEKSNV--FSFSVFLFELLTG 150
            +  GT+ Y APE +R G       V  +S  V  FELLTG
Sbjct: 164 YSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTG 204

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 13/153 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAM 57
           ++  ++I++     L+     +V E  + G L   +    G P P  E  + +      +
Sbjct: 55  KLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLP--EDQVWR----FFI 108

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
            I+  LA+LH    + I+ R+ K+  +  +  +  K+ D  ++  + +  T+  +T++GT
Sbjct: 109 QILLGLAHLH---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSD-NTNFANTIVGT 164

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
             Y +PE      +NEKS+V++  V L+E  TG
Sbjct: 165 PYYLSPELCEDKPYNEKSDVWALGVVLYECCTG 197

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 19/168 (11%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H H+++L+G CL +    L+ + +  G L D +    + H + +  ++ L   + I  
Sbjct: 66  VDHPHVVRLLGICL-SSQVQLITQLMPLGCLLDYV----RNHKDNIGSQYLLNWCVQIAK 120

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGY 120
            ++YL     + +V R+     +L       K+ DF L+  +   E     +     + +
Sbjct: 121 GMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKW 177

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVK 158
            A E +   ++  KS+V+S+ V ++EL+T            ++ DL++
Sbjct: 178 MALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLE 225

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 21/154 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWD--RILG---APQPHFEPLLLKHRLKI 55
           ++ H ++++L+G  L   + I V E +  G L +  R  G                 L+ 
Sbjct: 55  KLHHKNLVRLLGVILHNGLYI-VMELMSKGNLVNFLRTRGRALVSVIQL--------LQF 105

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           ++D+   + YL     + +V R+     IL +E+ VAK+ DF L+     G     D   
Sbjct: 106 SLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG----VDNSK 158

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
             + + APE ++   F+ KS+V+S+ V L+E+ +
Sbjct: 159 LPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFS 192

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 16/158 (10%)

Query: 1   QMSHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q  H +I+KLIG C++  PI I V E V  G+L   +          L +K  L++++D 
Sbjct: 48  QYDHPNIVKLIGVCVQKQPIYI-VMELVPGGSLLTFLRKKK----NRLTVKKLLQMSLDA 102

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT-- 117
              + YL     +  + R+      L  E NV K+ DF +S     G   ++D   G   
Sbjct: 103 AAGMEYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSD---GLKQ 156

Query: 118 --LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDV 153
             + + APE +  G +  +S+V+S+ + L+E  +  D 
Sbjct: 157 IPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDT 194

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 52/221 (23%)

Query: 13  CCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYL--HFGF 70
           C LE PI I V E ++YG+L + + G        L L   + +A  +   +AYL      
Sbjct: 70  CTLEEPIYI-VTELMKYGSLLEYLQGGAGRA---LKLPQLIDMAAQVASGMAYLEAQNYI 125

Query: 71  PRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV 130
            R +  RN     +L  E N+ K+ DF L+  I E      +     + + APE      
Sbjct: 126 HRDLAARN-----VLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNR 180

Query: 131 FNEKSNVFSFSVFLFEL----------LTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
           F+ KS+V+SF + L E+          +T  +V   V   + + CP       C      
Sbjct: 181 FSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYRMPCP-----PGC------ 229

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS 221
                             ++L+    +  +C K+ P DRP+
Sbjct: 230 -----------------PKELY---DIMLDCWKEDPDDRPT 250

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 11/153 (7%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRIL--GAPQPHF-EPLLLKHRLKIAM 57
           +++H +I+K      E     +V E    G L  +I         F E  +L   +++ +
Sbjct: 55  KLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCL 114

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
               AL YLH    R I+ R+ K   I      + KL DF +S  +      +  TV+GT
Sbjct: 115 ----ALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDFGIS-KVLSSTVDLAKTVVGT 166

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
             Y +PE  +   +N KS+++S    L+EL T 
Sbjct: 167 PYYLSPELCQNKPYNYKSDIWSLGCVLYELCTL 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           IV AL YLH    + I+ R+ K   IL +E+    + DF+++  +      +T +  GT 
Sbjct: 109 IVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDT--LTTSTSGTP 163

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GY APE +    ++   + +S  V  +E L G
Sbjct: 164 GYMAPEVLCRQGYSVAVDWWSLGVTAYECLRG 195

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 54.4 bits (131), Expect = 8e-09
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THIT 111
           KIA  ++  L+YLH    R I+ R+ K S IL   +   KL DF +S     GE    + 
Sbjct: 109 KIAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVS-----GELVNSLA 160

Query: 112 DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFEL 147
            T  GT  Y APE ++   ++  S+V+S  + L E+
Sbjct: 161 GTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEV 196

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 23/238 (9%)

Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         LV E + YG+L D +    Q H E L  +  L  A  I
Sbjct: 62  LQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYL----QKHRERLDHRKLLLYASQI 117

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT-- 117
              + YL     +  V R+  T  IL   EN  K+ DF L+  +P+ + +      G   
Sbjct: 118 CKGMEYLG---SKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESP 174

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+V+SF V L+EL T  D S           P +E+++    D
Sbjct: 175 IFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSC---------SPPAEFMRMMGND 225

Query: 178 NRFTEIVDHIVVEDVSSIEKEQQLHASAQV---TFECIKDSPADRPSMVDVAKKLRQI 232
            +   IV H++    ++          A++     EC  + P+ RPS  ++A ++  I
Sbjct: 226 KQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI 283

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 7/149 (4%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q  H +I+KLIG C +     +V E V  G      L   +   + L  K  +K A+D  
Sbjct: 48  QYDHPNIVKLIGVCTQRQPIYIVMELVPGGDF----LSFLRKKKDELKTKQLVKFALDAA 103

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AYL     +  + R+      L  E NV K+ DF +S    +G    +      + +
Sbjct: 104 AGMAYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKW 160

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            APE +  G ++ +S+V+S+ + L+E  +
Sbjct: 161 TAPEALNYGRYSSESDVWSYGILLWETFS 189

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q  H HI+KLIG   E P+ I V E    G L   +    Q +   L L   +  +  + 
Sbjct: 63  QFDHPHIVKLIGVITENPVWI-VMELAPLGELRSYL----QVNKYSLDLASLILYSYQLS 117

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            ALAYL     +  V R+     +L +  +  KL DF LS  + +   +        + +
Sbjct: 118 TALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKW 174

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELL 148
            APE +    F   S+V+ F V ++E+L
Sbjct: 175 MAPESINFRRFTSASDVWMFGVCMWEIL 202

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 14/101 (13%)

Query: 59  IVHALAYLH-FGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS--------ISIPEGETH 109
           IV AL YLH  G    I+ R+ K   IL +     KL DF LS        I++ + E  
Sbjct: 102 IVLALEYLHSNG----IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKE 157

Query: 110 ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
               V GT  Y APE +     ++  + +S    L+E L G
Sbjct: 158 DKRIV-GTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVG 197

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 13/156 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRIL----GAPQPHFEPLLLKHRLKIA 56
           ++SH ++++L+G C E     ++ E    G L   +        +    PL  K ++ + 
Sbjct: 64  KLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALC 123

Query: 57  MDIVHALAYL---HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
             I   + +L    F   R +  RN    C++ ++    K+   SLS  +   E +    
Sbjct: 124 TQIALGMDHLSNARF-VHRDLAARN----CLVSSQ-REVKVSLLSLSKDVYNSEYYKLRN 177

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            +  L + APE ++   F+ KS+V+SF V ++E+ T
Sbjct: 178 ALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFT 213

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 37/209 (17%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H ++++L+G C   P   ++ E + YG L D +    +     ++L   L +A  I 
Sbjct: 58  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQIS 114

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT-VMGTLG 119
            A+ YL     +  + R+      L  E ++ K+ DF LS  +  G+T+         + 
Sbjct: 115 SAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIK 170

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHDLV-------- 164
           + APE +    F+ KS+V++F V L+E+ T       G D+S     V++L+        
Sbjct: 171 WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS----QVYELLEKGYRMER 226

Query: 165 ---CPFSEY--LKNCFEDN-----RFTEI 183
              CP   Y  ++ C++ N      F EI
Sbjct: 227 PEGCPPKVYELMRACWQWNPSDRPSFAEI 255

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 52/215 (24%), Positives = 85/215 (39%), Gaps = 40/215 (18%)

Query: 22  LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT 81
           +V E +  G+L D +           +L     IA  I+  L YLH    R I+ R+ K 
Sbjct: 76  IVLEYMDGGSLADLL--KKVGKIPEPVLA---YIARQILKGLDYLH--TKRHIIHRDIKP 128

Query: 82  SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFS 141
           S +L N +   K+ DF +S  + E      +T +GT+ Y +PE ++   ++  ++++S  
Sbjct: 129 SNLLINSKGEVKIADFGISKVL-ENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLG 187

Query: 142 VFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQL 201
           + L E   G               PF            F E++  I      S+  E   
Sbjct: 188 LTLLECALG-------------KFPFLPP-----GQPSFFELMQAICDGPPPSLPAE--- 226

Query: 202 HASAQVTFE-----CIKDSPADRPSMVDVAKKLRQ 231
             S +  F      C++  P  RPS    A +L Q
Sbjct: 227 EFSPE--FRDFISACLQKDPKKRPS----AAELLQ 255

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 53  LKIAMDIVHALAYLHFG-FPRPIVF-RNFKTSCILFNEENVAKLFDFSLSISIPEGETHI 110
            +I   ++ AL   H    P   V  R+ K + I  +  N  KL DF L+  +    +  
Sbjct: 108 WRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHD-SSF 166

Query: 111 TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
             T +GT  Y +PE +    ++EKS+++S    ++EL   
Sbjct: 167 AKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCAL 206

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 52.7 bits (126), Expect = 3e-08
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 23/164 (14%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRIL------------GAPQPHFEPLLL 49
           + H HI+K  G C +    I+VFE +++G L ++ L            G P+     L L
Sbjct: 64  LQHEHIVKFYGVCGDGDPLIMVFEYMKHGDL-NKFLRAHGPDAMILVDGQPRQAKGELGL 122

Query: 50  KHRLKIAMDIVHALAYL---HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEG 106
              L IA  I   + YL   HF      V R+  T   L     + K+ DF +S  +   
Sbjct: 123 SQMLHIASQIASGMVYLASQHF------VHRDLATRNCLVGANLLVKIGDFGMSRDVYST 176

Query: 107 ETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           + + +    M  + +  PE +    F  +S+V+SF V L+E+ T
Sbjct: 177 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFT 220

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 25/163 (15%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRI-----------LGAPQPHFEPLLLKHR 52
           H +I+ L+G C +     +V E   +G L D +              P+P  E L  K  
Sbjct: 75  HKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDL 134

Query: 53  LKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD 112
           +  A  +   + +L     +  + R+     +L  E++V K+ DF L+  I     H  D
Sbjct: 135 VSFAYQVARGMEFLA---SKKCIHRDLAARNVLVTEDHVMKIADFGLARDI-----HHID 186

Query: 113 ----TVMGTLGY--CAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
               T  G L     APE +   V+  +S+V+SF V L+E+ T
Sbjct: 187 YYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFT 229

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 52.3 bits (125), Expect = 4e-08
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 22/160 (13%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWD-----RILGAPQPHF-------EPLLLKH 51
           H +I+ L+G C       +  E   YG L D     R+L    P F         L  + 
Sbjct: 62  HPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVL-ETDPAFAKEHGTASTLTSQQ 120

Query: 52  RLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT 111
            L+ A D+   + YL     +  + R+     +L  E   +K+ DF LS     GE    
Sbjct: 121 LLQFASDVATGMQYLS---EKQFIHRDLAARNVLVGENLASKIADFGLS----RGEEVYV 173

Query: 112 DTVMGTLG--YCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
              MG L   + A E +   V+  KS+V+SF V L+E+++
Sbjct: 174 KKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVS 213

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I + E ++ G+L D  L  P+     L +   + +A  I 
Sbjct: 57  QLQHPRLVRLYAVVTQEPIYI-ITEYMENGSLVD-FLKTPEGI--KLTINKLIDMAAQIA 112

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     +  + R+ + + IL +E    K+ DF L+  I + E    +     + +
Sbjct: 113 EGMAFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKW 169

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            APE +  G F  KS+V+SF + L E++T
Sbjct: 170 TAPEAINYGTFTIKSDVWSFGILLTEIVT 198

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H +I++ +G CL+     +  E V  G++   IL    P  EP+  K+       I+ 
Sbjct: 59  LKHVNIVQYLGTCLDDNTISIFMEFVPGGSI-SSILNRFGPLPEPVFCKY----TKQILD 113

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM-----G 116
            +AYLH      +V R+ K + ++     + KL DF  +  +     H T + M     G
Sbjct: 114 GVAYLH---NNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHG 170

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           T  + APE +    +  KS+++S    +FE+ TG
Sbjct: 171 TPYWMAPEVINESGYGRKSDIWSIGCTVFEMATG 204

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 51.9 bits (124), Expect = 4e-08
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 8/147 (5%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q SH +I++LIG C +     +V E VQ G      L    P    L +K  +++  +  
Sbjct: 49  QYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLT-FLRTEGPR---LKVKELIQMVENAA 104

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT-LG 119
             + YL     +  + R+      L  E+NV K+ DF +S    +G    T  +    + 
Sbjct: 105 AGMEYLE---SKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVK 161

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFE 146
           + APE +  G ++ +S+V+SF + L+E
Sbjct: 162 WTAPEALNYGRYSSESDVWSFGILLWE 188

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THIT 111
           KIA+ ++  L YLH      I+ R+ K S IL N     KL DF +S     G+    + 
Sbjct: 104 KIAVAVLKGLTYLHE--KHKIIHRDVKPSNILVNSRGQIKLCDFGVS-----GQLVNSLA 156

Query: 112 DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            T +GT  Y APE ++   ++ KS+++S  + L EL TG
Sbjct: 157 KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATG 195

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 37/213 (17%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q  H +I++L G   ++   +++ E ++ G+L D+ L      F    L   + +   I 
Sbjct: 61  QFDHPNIIRLEGVVTKSRPVMIITEYMENGSL-DKFLRENDGKFTVGQL---VGMLRGIA 116

Query: 61  HALAYL--HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG-- 116
             + YL       R +  RN     IL N   V K+ DF LS  + + E   T T  G  
Sbjct: 117 SGMKYLSEMNYVHRDLAARN-----ILVNSNLVCKVSDFGLSRRLEDSEA--TYTTKGGK 169

Query: 117 -TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD------ 162
             + + APE +    F   S+V+SF + ++E+++            D++K V D      
Sbjct: 170 IPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVEDGYRLPP 229

Query: 163 -LVCPFSEY--LKNCFEDNR-----FTEIVDHI 187
            + CP + Y  + +C++ +R     F++IV  +
Sbjct: 230 PMDCPSALYQLMLDCWQKDRNERPTFSQIVSTL 262

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 51.2 bits (122), Expect = 9e-08
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 18/160 (11%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTL--------WDRILGAPQPHFEPLLLKHRL 53
           + H HI+K  G C+E    I+VFE +++G L         D +L A       L     L
Sbjct: 64  LQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQML 123

Query: 54  KIAMDIVHALAYL---HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH- 109
            IA  I   + YL   HF      V R+  T   L  E  + K+ DF +S  +   + + 
Sbjct: 124 HIAQQIAAGMVYLASQHF------VHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYR 177

Query: 110 ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           +    M  + +  PE +    F  +S+V+S  V L+E+ T
Sbjct: 178 VGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFT 217

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H H++ L   C       ++ E ++ G+L    L +P+   + L +   + +A  +   +
Sbjct: 61  HKHLISLFAVCSVGEPVYIITELMEKGSLLA-FLRSPEG--QVLPVASLIDMACQVAEGM 117

Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAP 123
           AYL     +  + R+     IL  E+ V K+ DF L+  I E + +++        + AP
Sbjct: 118 AYLE---EQNSIHRDLAARNILVGEDLVCKVADFGLARLIKE-DVYLSSDKKIPYKWTAP 173

Query: 124 EYMRTGVFNEKSNVFSFSVFLFELLT 149
           E    G F+ KS+V+SF + L+E+ T
Sbjct: 174 EAASHGTFSTKSDVWSFGILLYEMFT 199

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           +V A  YLH    R I++R+ K   +L +     KL DF  +  +  G+   T T  GT 
Sbjct: 102 VVLAFEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQK--TWTFCGTP 156

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            Y APE +    ++   + +S  + L+ELLTG
Sbjct: 157 EYVAPEIILNKGYDFSVDYWSLGILLYELLTG 188

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A  I+  L +LH    R IV+R+ K   +L ++    ++ D  L++ +  G+        
Sbjct: 101 AAQIICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKK--IKGRA 155

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT GY APE ++  V++   + F+    L+E++ G
Sbjct: 156 GTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAG 190

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 24/163 (14%)

Query: 1   QMSHNHILKLI--GCCLETPIPIL--VFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIA 56
           ++ H +I+ L+  G   E P  +L  VFE V   TL + +  A             +   
Sbjct: 34  RLYHPNIVALLDSG---EAPPGLLFAVFEYVPGRTLREVL--AADGALPAGETGRLMLQV 88

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENV---AKLFDFSLSISIP----EGETH 109
           +D   ALA  H    + IV R+ K   I+ ++  V   AK+ DF +   +P         
Sbjct: 89  LD---ALACAH---NQGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRDADVAT 142

Query: 110 ITDT--VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           +T T  V+GT  YCAPE +R       S+++++ +   E LTG
Sbjct: 143 LTRTTEVLGTPTYCAPEQLRGEPVTPNSDLYAWGLIFLECLTG 185

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 57/261 (21%), Positives = 95/261 (36%), Gaps = 72/261 (27%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTL-----------------WDRILGAPQPHFEP 46
           H +I+KL+G C       L+FE + YG L                           +  P
Sbjct: 67  HPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLP 126

Query: 47  LLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEG 106
           L    +L IA  +   +AYL     R  V R+  T   L  E  V K+ DF LS +I   
Sbjct: 127 LSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNI--- 180

Query: 107 ETHITDTVMGT------LGYCAPEYMRTGVFNEKSNVFSFSVFLFEL----------LTG 150
             +  D    +      + +  PE +    +  +S+V+++ V L+E+          +  
Sbjct: 181 --YSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAH 238

Query: 151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFE 210
            +V   V+D + L CP          DN   E+ + + +                     
Sbjct: 239 EEVIYYVRDGNVLSCP----------DNCPLELYNLMRL--------------------- 267

Query: 211 CIKDSPADRPSMVDVAKKLRQ 231
           C    P+DRPS   + + L++
Sbjct: 268 CWSKLPSDRPSFASINRILQR 288

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 13/152 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE-PLLLKHRLKIA--M 57
           ++ H  +++L     E PI I V E +  G+L D + G    +   P L+    +IA  M
Sbjct: 57  KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 115

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
             V  + Y+H         R+ + + IL  E  V K+ DF L+  I + E          
Sbjct: 116 AYVERMNYVH---------RDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 166

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           + + APE    G F  KS+V+SF + L EL T
Sbjct: 167 IKWTAPEAALYGRFTIKSDVWSFGILLTELTT 198

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 53  LKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD 112
           L +A+D +H+L          I++R+ K   IL +EE   KL DF LS    + E     
Sbjct: 107 LALALDHLHSLG---------IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK-AY 156

Query: 113 TVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           +  GT+ Y APE +      + ++ +SF V +FE+LTG
Sbjct: 157 SFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 194

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I+  L ++H  F   +V+R+ K + IL +E    ++ D  L+    + + H +   +
Sbjct: 103 ATEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---V 156

Query: 116 GTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTG 150
           GT GY APE ++ G  ++  ++ FS    LF+LL G
Sbjct: 157 GTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRG 192

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 38/212 (17%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLK-IA--M 57
           Q SH++I++L G   +    +++ E ++ G L D+ L      F    L   L+ IA  M
Sbjct: 62  QFSHHNIIRLEGVVTKFKPAMIITEYMENGAL-DKYLRDHDGEFSSYQLVGMLRGIAAGM 120

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI---PEGETHITDTV 114
             +  + Y+H    R +  RN     IL N     K+ DF LS  +   PEG T+ T   
Sbjct: 121 KYLSDMNYVH----RDLAARN-----ILVNSNLECKVSDFGLSRVLEDDPEG-TYTTSGG 170

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-----GWDVS--DLVKDVHD----- 162
              + + APE +    F   S+V+SF + ++E+++      WD+S  +++K ++D     
Sbjct: 171 KIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGFRLP 230

Query: 163 --LVCPFSEY--LKNCFEDNR-----FTEIVD 185
             + CP + Y  +  C++ +R     F +IV+
Sbjct: 231 APMDCPSAVYQLMLQCWQQDRARRPRFVDIVN 262

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 30/192 (15%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPL---LLKHRLKIAMD 58
           + H +I+K IG    +    ++ E  + G+L   I       F P    L+   +     
Sbjct: 56  LKHPNIVKYIGSIETSDSLYIILEYAENGSLRQII-----KKFGPFPESLVAVYVY---Q 107

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           ++  LAYLH    + ++ R+ K + IL  ++ V KL DF ++  + +  +    +V+GT 
Sbjct: 108 VLQGLAYLH---EQGVIHRDIKAANILTTKDGVVKLADFGVATKLND-VSKDDASVVGTP 163

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG----WDVSDL------VKDVH-----DL 163
            + APE +     +  S+++S    + ELLTG    +D++ +      V+D H      +
Sbjct: 164 YWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDDHPPLPEGI 223

Query: 164 VCPFSEYLKNCF 175
                ++L  CF
Sbjct: 224 SPELKDFLMQCF 235

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 7/96 (7%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I+  L ++H  F   +V+R+ K + IL +E    ++ D  L+    + + H +   +
Sbjct: 103 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---V 156

Query: 116 GTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTG 150
           GT GY APE ++ GV ++  ++ FS    LF+LL G
Sbjct: 157 GTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG 192

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 14/153 (9%)

Query: 1   QMSHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           ++ H+ +++L   C E  PI I V E +  G+L D  L + +     L L   + +A  I
Sbjct: 57  KLRHDKLVQLYAVCSEEEPIYI-VTEYMSKGSLLD-FLKSGEGKK--LRLPQLVDMAAQI 112

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT-- 117
              +AYL     R  + R+     IL  E  V K+ DF L+  I   E        G   
Sbjct: 113 AEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLI---EDDEYTAREGAKF 166

Query: 118 -LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            + + APE    G F  KS+V+SF + L E++T
Sbjct: 167 PIKWTAPEAANYGRFTIKSDVWSFGILLTEIVT 199

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 22/160 (13%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWD-----RILGAPQPHF-------EPLLLKH 51
           H +I+ L+G C       L  E   +G L D     R+L    P F         L  + 
Sbjct: 55  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVL-ETDPAFAIANSTASTLSSQQ 113

Query: 52  RLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT 111
            L  A D+   + YL     +  + R+     IL  E  VAK+ DF LS     G+    
Sbjct: 114 LLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLS----RGQEVYV 166

Query: 112 DTVMGTLG--YCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
              MG L   + A E +   V+   S+V+S+ V L+E+++
Sbjct: 167 KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 206

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 48/237 (20%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAP-QPHFEPLLLKH------RL 53
           Q+ H +I++     LE     +V + ++         GAP   HF  L  K       R+
Sbjct: 65  QLRHPNIVRYYKTFLENDRLYIVMDLIE---------GAPLGEHFNSLKEKKQRFTEERI 115

Query: 54  -KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD 112
             I + +V AL YLH    + IV R+   + I+  E++   + DF L+    +       
Sbjct: 116 WNIFVQMVLALRYLHK--EKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQ--KQPESKLT 171

Query: 113 TVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLK 172
           +V+GT+ Y  PE ++   + EK++V++F   L+++ T             L  PF  Y  
Sbjct: 172 SVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCT-------------LQPPF--YST 216

Query: 173 NCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTF---ECIKDSPADRPSMVDVA 226
           N    +  T+IV+       +  E   +   S  VT     C+      RP ++ V+
Sbjct: 217 NML--SLATKIVE-------AVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQVS 264

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 13/152 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE-PLLLKHRLKIA--M 57
           ++ H+ ++ L     E PI I V E +  G+L D +      + + P L+    +IA  M
Sbjct: 57  KLRHDKLVPLYAVVSEEPIYI-VTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGM 115

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
             +  + Y+H         R+ + + IL  +  V K+ DF L+  I + E          
Sbjct: 116 AYIERMNYIH---------RDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFP 166

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           + + APE    G F  KS+V+SF + L EL+T
Sbjct: 167 IKWTAPEAALYGRFTIKSDVWSFGILLTELVT 198

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I+  L +LH    + I++R+ K   +L +++   K+ DF +      GE     T  
Sbjct: 102 AAEIICGLQFLH---KKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEG-KASTFC 157

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  Y APE ++   +NE  + +SF V L+E+L G
Sbjct: 158 GTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIG 192

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 20/171 (11%)

Query: 1   QMSHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           ++SH ++++L G C +  PI I V E +  G L + +    +     L  +  L +  D+
Sbjct: 55  KLSHPNLVQLYGVCTKQRPIFI-VTEYMANGCLLNYL----RERKGKLGTEWLLDMCSDV 109

Query: 60  VHALAYL--HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
             A+ YL  +    R +  RN    C L  E+NV K+ DF L+  + + +   +      
Sbjct: 110 CEAMEYLESNGFIHRDLAARN----C-LVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFP 164

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVH 161
           + +  PE      F+ KS+V+SF V ++E+ +        +  S++V+ V 
Sbjct: 165 VKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVS 215

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 7/148 (4%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H+ ++KL     + PI I+  E +  G+L D  L + +   +PL     +  +  I  
Sbjct: 58  LQHDKLVKLHAVVTKEPIYIIT-EFMAKGSLLD-FLKSDEGSKQPL--PKLIDFSAQIAE 113

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYC 121
            +A++     R  + R+ + + IL +   V K+ DF L+  I + E    +     + + 
Sbjct: 114 GMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWT 170

Query: 122 APEYMRTGVFNEKSNVFSFSVFLFELLT 149
           APE +  G F  KS+V+SF + L E++T
Sbjct: 171 APEAINFGSFTIKSDVWSFGILLMEIVT 198

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 11/145 (7%)

Query: 7   ILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYL 66
           I K  G  L+ P   ++ E  + G++  R L    P  E    K+   I  +++ AL Y+
Sbjct: 64  ITKYYGSYLKGPRLWIIMEYAEGGSV--RTLMKAGPIAE----KYISVIIREVLVALKYI 117

Query: 67  HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYM 126
           H      ++ R+ K + IL       KL DF ++  + +  +  + T +GT  + APE +
Sbjct: 118 H---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRS-TFVGTPYWMAPEVI 173

Query: 127 RTGV-FNEKSNVFSFSVFLFELLTG 150
             G  ++ K++++S  + ++E+ TG
Sbjct: 174 TEGKYYDTKADIWSLGITIYEMATG 198

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 15/159 (9%)

Query: 1   QMSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGA---PQPHFEPLLLKH 51
           +  H ++++LIG CL+T      P P+++   +++G L   +L +     P + P   + 
Sbjct: 56  EFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPT--QM 113

Query: 52  RLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT 111
            +K   DI   + YL     +  + R+      + NE     + DF LS  I  G+ +  
Sbjct: 114 LVKFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQ 170

Query: 112 DTVMGT-LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
             +    + + A E +   V+  KS+V+SF V ++E+ T
Sbjct: 171 GRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIAT 209

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 1   QMSHNHILKLIGCCLET------PIPILVFESVQYGTL-----WDRILGAPQPHFEPLLL 49
              H +++KLIG C E       P P+++   +++G L     + R+ G P    E L L
Sbjct: 57  DFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLP----EKLPL 112

Query: 50  KHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEG--- 106
           +  LK  +DI   + YL     R  + R+      +  E+    + DF LS  I  G   
Sbjct: 113 QTLLKFMVDIALGMEYLS---NRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYY 169

Query: 107 -ETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            +  I       + + A E +   V+  KS+V++F V ++E+ T
Sbjct: 170 RQGRIAKM---PVKWIAIESLADRVYTSKSDVWAFGVTMWEIAT 210

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 13/155 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWD--RILGAPQPHFEPLLLKHRLKIAMD 58
            + H +I++ +G   E     +  E V  G+L    R    P    E  ++ +       
Sbjct: 61  YLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFY----TKQ 116

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNE-ENVAKLFDFSLSISIPEGETHITDTVMGT 117
           I+  L YLH      IV R+ K   +L N    V K+ DF  S  +  G    T+T  GT
Sbjct: 117 ILEGLKYLH---DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLA-GINPCTETFTGT 172

Query: 118 LGYCAPEYMRTGV--FNEKSNVFSFSVFLFELLTG 150
           L Y APE +  G   +   ++++S    + E+ TG
Sbjct: 173 LQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATG 207

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 9/153 (5%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE---PLLLKHRLKIAMDI 59
           +H +I++LIG   E     ++ E +  G L    L   +P  E    L +K  L  A D+
Sbjct: 67  NHQNIVRLIGVSFERLPRFILLELMAGGDL-KSFLRENRPRPERPSSLTMKDLLFCARDV 125

Query: 60  VHALAYLH-FGF-PRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMG 116
                YL    F  R I  RN   +C       VAK+ DF ++  I     +      M 
Sbjct: 126 AKGCKYLEENHFIHRDIAARNCLLTCK--GPGRVAKIADFGMARDIYRASYYRKGGRAML 183

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            + +  PE    G+F  K++V+SF V L+E+ +
Sbjct: 184 PIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFS 216

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 23/157 (14%)

Query: 2   MSHNH-ILKLIGCCLETPIPIL-VFESVQYGTLW-----DRILGAPQPHFEPLLLKHRLK 54
           ++ NH  L  + CC +TP  +  V E V  G L       R     +  F          
Sbjct: 51  LARNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARF---------- 100

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL-SISIPEGETHITDT 113
            A +I  AL +LH    + I++R+ K   +L + E   KL DF +    I  G+T  T T
Sbjct: 101 YAAEITSALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKT--TST 155

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
             GT  Y APE ++  ++    + ++  V L+E+L G
Sbjct: 156 FCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCG 192

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 49.2 bits (117), Expect = 5e-07
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
           +I+ AL +LH      IV+R+ K   IL + E    L DF LS      E   T +  GT
Sbjct: 113 EIILALEHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGT 169

Query: 118 LGYCAPEYMRTGVFNEKS-NVFSFSVFLFELLTG 150
           + Y APE +R    + K+ + +S  + +FELLTG
Sbjct: 170 IEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTG 203

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           +SH +I++     LE    ++V E    GTL + I        +       L   + I+ 
Sbjct: 56  LSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDE---DTILHFFVQILL 112

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNE-ENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
           AL ++H    + I+ R+ KT  IL ++ + V K+ DF +S  +         TV+GT  Y
Sbjct: 113 ALHHVH---TKLILHRDLKTQNILLDKHKMVVKIGDFGISKIL--SSKSKAYTVVGTPCY 167

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            +PE      +N+KS++++    L+EL +
Sbjct: 168 ISPELCEGKPYNQKSDIWALGCVLYELAS 196

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 9/151 (5%)

Query: 5   NHILKLIGCCLETPIPILVFESVQYGTLWD-----RILGAPQPHFEPLLLKHRLKIAMDI 59
           +H+++L+G        ++V E +  G L       R      P   P  L+  +++A +I
Sbjct: 69  HHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEI 128

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTL 118
              +AYL     +  V R+      +  E+   K+ DF ++  I E + +      +  +
Sbjct: 129 ADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPV 185

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            + APE ++ GVF  KS+V+SF V L+E+ T
Sbjct: 186 RWMAPESLKDGVFTTKSDVWSFGVVLWEMAT 216

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSI-SIPEGETHITDTV 114
           A +IV  L +LH    R I++R+ K   +L + E   K+ DF +    I  G T  T T 
Sbjct: 102 AAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVT--TSTF 156

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            GT  Y APE +    +    + ++  V L+E+L G
Sbjct: 157 CGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAG 192

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 18/120 (15%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I   L  LH      IV+R+ K   IL ++    ++ D  L++ +PEG+T I   V 
Sbjct: 108 AAEICCGLEDLH---QERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT-IKGRV- 162

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW-------------DVSDLVKDVHD 162
           GT+GY APE ++   +    + ++    L+E++ G              +V  LVK+V +
Sbjct: 163 GTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQE 222

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 36/232 (15%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMDI 59
           +M H +I+       E     +V E    G L  RI       F E  +L   ++I++ +
Sbjct: 55  KMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGL 114

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTL 118
            H    +H    R I+ R+ K+  I  ++   VAKL DF ++  + +    +  T +GT 
Sbjct: 115 KH----IH---DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLND-SMELAYTCVGTP 166

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDN 178
            Y +PE  +   +N K++++S    L+EL T                     LK+ FE N
Sbjct: 167 YYLSPEICQNRPYNNKTDIWSLGCVLYELCT---------------------LKHPFEGN 205

Query: 179 RFTEIVDHIVVEDVSSIEK--EQQLHASAQVTFECIKDSPADRPSMVDVAKK 228
              ++V  I     + I     + L +     F   K SP DRPS+  + K+
Sbjct: 206 NLHQLVLKICQGYFAPISPNFSRDLRSLISQLF---KVSPRDRPSITSILKR 254

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 14/126 (11%)

Query: 49  LKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET 108
           LK +LK A+ I   + YL     R  V R+     +L   E+  K+ DF L+ +I   + 
Sbjct: 108 LKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKE 164

Query: 109 HIT--DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCP 166
           + T  D +   + + APE +    F   S+V+SF V L+ELLT  D             P
Sbjct: 165 YYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSE---------SSP 215

Query: 167 FSEYLK 172
            + +LK
Sbjct: 216 MTLFLK 221

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
           +IV AL +LH      I++R+ K   IL +      L DF LS    E E     +  GT
Sbjct: 113 EIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGT 169

Query: 118 LGYCAPEYMRTGVFNEKSNV--FSFSVFLFELLTG 150
           + Y AP+ +R G       V  +S  V ++ELLTG
Sbjct: 170 IEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTG 204

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 22  LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT 81
           LV   +  G L   I     P FE    +  L  A +I+  L  LH       V+R+ K 
Sbjct: 77  LVLTIMNGGDLKFHIYNMGNPGFEE---ERALFYAAEILCGLEDLH---RENTVYRDLKP 130

Query: 82  SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFS 141
             IL ++    ++ D  L++ IPEGE+ I   V GT+GY APE +    +    + +   
Sbjct: 131 ENILLDDYGHIRISDLGLAVKIPEGES-IRGRV-GTVGYMAPEVLNNQRYTLSPDYWGLG 188

Query: 142 VFLFELLTG 150
             ++E++ G
Sbjct: 189 CLIYEMIEG 197

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 19/129 (14%)

Query: 1   QMSHNHILKLIG-CCLETPIPILVFESVQYGTLWD--RILGAPQPHFEPLLLKHRLKIAM 57
           ++ H +I+KL+     E  +  LVFE        D  + L        P L+K    I  
Sbjct: 54  ELKHPNIVKLLDVIHTERKL-YLVFEYCDM----DLKKYLDKRPGPLSPNLIKS---IMY 105

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS--ISIPEGETHITDTVM 115
            ++  LAY H      I+ R+ K   IL N + V KL DF L+    IP      T  V+
Sbjct: 106 QLLRGLAYCH---SHRILHRDLKPQNILINRDGVLKLADFGLARAFGIP--LRTYTHEVV 160

Query: 116 GTLGYCAPE 124
            TL Y APE
Sbjct: 161 -TLWYRAPE 168

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 19/160 (11%)

Query: 4   HNHILKLIGCCL-ETPIPILVFESVQYGTLWD--RILGAPQP---------HFEPLLLKH 51
           H +I+ L+G C  E P+ ++V E    G L +  R    P P           E L  K 
Sbjct: 77  HKNIINLLGVCTQEGPLYVIV-EYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKD 135

Query: 52  RLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT 111
            +  A  +   + YL     R  + R+     +L  E+NV K+ DF L+  + + + +  
Sbjct: 136 LVSCAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDID-YYK 191

Query: 112 DTVMGTL--GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            T  G L   + APE +   V+  +S+V+SF + ++E+ T
Sbjct: 192 KTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFT 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 8/95 (8%)

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL-SISIPEGETHITDTVMG 116
           +I  AL +LH    + I++R+ K   IL + +   KL DF L   SI EG   +T T  G
Sbjct: 108 EISLALEHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGT--VTHTFCG 162

Query: 117 TLGYCAPE-YMRTGVFNEKSNVFSFSVFLFELLTG 150
           T+ Y APE  MR+G   +  + +S    ++++LTG
Sbjct: 163 TIEYMAPEILMRSG-HGKAVDWWSLGALMYDMLTG 196

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 21/221 (9%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLW---DRILGAPQPHFEPLLLKHRLKIA 56
           Q S N  L  +  C +T   + LV E V  G L     R    P+        +H    A
Sbjct: 51  QASSNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQRKLPE--------EHARFYA 102

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSIS-IPEGETHITDTVM 115
            +I  AL +LH    R I++R+ K   +L + +   KL D+ +    +  G+T  T T  
Sbjct: 103 AEICIALNFLH---ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDT--TSTFC 157

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCP---FSEYLK 172
           GT  Y APE +R   +    + ++  V +FE++ G    D++ D  D+      F   L+
Sbjct: 158 GTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILE 217

Query: 173 NCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIK 213
                 RF  +    V++   + + +++L    Q  F  IK
Sbjct: 218 KPIRIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGFSDIK 258

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           I    +  L YLH       + R+ K   IL NEE  AKL DF +S           +TV
Sbjct: 104 ILYQTLKGLEYLHS---NKKIHRDIKAGNILLNEEGQAKLADFGVS-GQLTDTMAKRNTV 159

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           +GT  + APE ++   +N K++++S  +   E+  G
Sbjct: 160 IGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEG 195

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 25/158 (15%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWD-------RILGAPQPHFEPLLLKHRL 53
           ++ H+ +++L     E PI I V E +  G+L D       R L  P       L+    
Sbjct: 57  KLRHDKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKDGEGRALKLPN------LVDMAA 109

Query: 54  KIA--MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT 111
           ++A  M  +  + Y+H         R+ +++ IL  +  V K+ DF L+  I + E    
Sbjct: 110 QVAAGMAYIERMNYIH---------RDLRSANILVGDGLVCKIADFGLARLIEDNEYTAR 160

Query: 112 DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
                 + + APE    G F  KS+V+SF + L EL+T
Sbjct: 161 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVT 198

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 18/106 (16%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
           KIA+ IV AL YLH      ++ R+ K S +L N     KL DF +S        ++ D+
Sbjct: 107 KIAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGIS-------GYLVDS 157

Query: 114 VMGTLG-----YCAPEY----MRTGVFNEKSNVFSFSVFLFELLTG 150
           V  T+      Y APE     +    ++ KS+V+S  + + EL TG
Sbjct: 158 VAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATG 203

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I+  L +LH    + IV+R+ K   IL + +   K+ DF +      G+   T T  
Sbjct: 102 AAEIICGLQFLH---SKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAK-TCTFC 157

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  Y APE +    +N   + +SF V L+E+L G
Sbjct: 158 GTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIG 192

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 8/149 (5%)

Query: 2   MSHNHILKLIGCCL-ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           + H+ +++L      E PI I+  E +  G+L D +          +LL   +  +  I 
Sbjct: 58  LQHDKLVRLYAVVTKEEPIYIIT-EYMAKGSLLDFL---KSDEGGKVLLPKLIDFSAQIA 113

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+     +  + R+ + + +L +E  + K+ DF L+  I + E    +     + +
Sbjct: 114 EGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKW 170

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            APE +  G F  KS+V+SF + L+E++T
Sbjct: 171 TAPEAINFGSFTIKSDVWSFGILLYEIVT 199

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 22/160 (13%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWD-----RILGAPQPHF-------EPLLLKH 51
           H +I+ L+G C       L  E   +G L D     R+L    P F         L  + 
Sbjct: 67  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVL-ETDPAFAIANSTASTLSSQQ 125

Query: 52  RLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT 111
            L  A D+   + YL     +  + R+     IL  E  VAK+ DF LS     G+    
Sbjct: 126 LLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLS----RGQEVYV 178

Query: 112 DTVMGTLG--YCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
              MG L   + A E +   V+   S+V+S+ V L+E+++
Sbjct: 179 KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 218

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 5   NHILKLIGCCLETPIPILVFESVQYGTL--WDRIL--------GAPQPHFEPLLLKHRLK 54
           +H+++L+G   +    ++V E + +G L  + R L        G P P      L+  ++
Sbjct: 69  HHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPT-----LQEMIQ 123

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           +A +I   +AYL+    +  V R+      +   +   K+ DF ++  I E + +     
Sbjct: 124 MAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETD-YYRKGG 179

Query: 115 MGTL--GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            G L   + APE ++ GVF   S+++SF V L+E+ +
Sbjct: 180 KGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 216

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 15/98 (15%)

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
           +  L  +H    + ++ R+ K++ IL     + KL DF  S            TV   +G
Sbjct: 150 IQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFS-------KMYAATVSDDVG 202

Query: 120 --------YCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
                   Y APE  R   +++K+++FS  V L+ELLT
Sbjct: 203 RTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLT 240

Length = 496

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 44/233 (18%), Positives = 92/233 (39%), Gaps = 36/233 (15%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++SH  +++L G C +     +V E ++ G L +  L   Q      +L   L +  D+ 
Sbjct: 55  KLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLN-YLRQRQGKLSKDML---LSMCQDVC 110

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             + YL        + R+      L +   V K+ DF ++  + + E   +      + +
Sbjct: 111 EGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKW 167

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
             PE      ++ KS+V+SF V ++E+ T   +            PF +           
Sbjct: 168 SPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKM------------PFEKK---------- 205

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFE----CIKDSPADRPSMVDVAKKL 229
               ++ VVE +S   +  +   ++   +E    C  + P  RP+  ++ + +
Sbjct: 206 ---SNYEVVEMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLRAI 255

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 46.2 bits (109), Expect = 6e-06
 Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 38/142 (26%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           +A+D +H++ ++H         R+ K   +L ++    KL DF   + + +      DT 
Sbjct: 153 LALDAIHSMGFIH---------RDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTA 203

Query: 115 MGTLGYCAPEYMRT----GVFNEKSNVFSFSVFLFELLTG-------------------- 150
           +GT  Y +PE +++    G +  + + +S  VFL+E+L G                    
Sbjct: 204 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHK 263

Query: 151 -----WDVSDLVKDVHDLVCPF 167
                 D +D+ K+  +L+C F
Sbjct: 264 NSLTFPDDNDISKEAKNLICAF 285

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 45.7 bits (108), Expect = 6e-06
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 8/97 (8%)

Query: 53  LKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD 112
           ++IAM    AL YLH    + I+ R+ KT  +     N+ K+ D  ++  + E +  +  
Sbjct: 109 VQIAM----ALQYLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIA-RVLENQCDMAS 160

Query: 113 TVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           T++GT  Y +PE      +N KS+V++    ++E+ T
Sbjct: 161 TLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMAT 197

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 23/160 (14%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI--LGAPQPHFEPLLLKHRLKIAMD 58
           ++ H +I++ +G  L+     +  E V  G++   +   GA    FE  L+++ ++    
Sbjct: 62  ELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGA----FEETLVRNFVR---Q 114

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT----- 113
           I+  L YLH    R I+ R+ K + IL + +   K+ DF +S  +   E +   T     
Sbjct: 115 ILKGLNYLH---NRGIIHRDIKGANILVDNKGGIKISDFGISKKL---EANSLSTKTNGA 168

Query: 114 ---VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
              + G++ + APE ++   +  K++++S    + E+LTG
Sbjct: 169 RPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTG 208

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 74  IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNE 133
           IV+R+ K   IL ++    ++ D  L++ IPEGET      +GT+GY APE +    +  
Sbjct: 123 IVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET--VRGRVGTVGYMAPEVINNEKYTF 180

Query: 134 KSNVFSFSVFLFELLTG 150
             + +     ++E++ G
Sbjct: 181 SPDWWGLGCLIYEMIQG 197

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           I+  L +LH    R I++R+ K   +L + +   ++ D  L++ + +G++  T    GT 
Sbjct: 106 IISGLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSK-TKGYAGTP 161

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELL 148
           G+ APE ++   ++   + F+  V L+E++
Sbjct: 162 GFMAPELLQGEEYDFSVDYFALGVTLYEMI 191

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 32/150 (21%), Positives = 67/150 (44%), Gaps = 8/150 (5%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
              H +I+      L      +V E +  G+L D I      +F  +       +  +++
Sbjct: 71  DCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDII----TQNFVRMNEPQIAYVCREVL 126

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             L YLH    + ++ R+ K+  IL +++   KL DF  +  + + ++    +V+GT  +
Sbjct: 127 QGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRN-SVVGTPYW 182

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            APE ++   +  K +++S  +   E+  G
Sbjct: 183 MAPEVIKRKDYGPKVDIWSLGIMCIEMAEG 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 45.8 bits (108), Expect = 8e-06
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 19/160 (11%)

Query: 4   HNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQPHF-----------EPLLLKH 51
           H +I+ L+G C +  P+ +LV E    G L + +     P             E L  K 
Sbjct: 77  HKNIINLLGACTQDGPLYVLV-EYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKD 135

Query: 52  RLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT 111
            +  A  +   + YL     +  + R+     +L  E+NV K+ DF L+  +   + +  
Sbjct: 136 LVSCAYQVARGMEYLA---SQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNID-YYK 191

Query: 112 DTVMGTL--GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            T  G L   + APE +   V+  +S+V+SF V L+E+ T
Sbjct: 192 KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFT 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 45.3 bits (107), Expect = 8e-06
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 1   QMSHNHILKLIGCCL-ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           ++SH  +++L G C  + PI I V E +  G L +  L      F+P  L   L++  D+
Sbjct: 55  KLSHEKLVQLYGVCTKQRPIYI-VTEYMSNGCLLN-YLREHGKRFQPSQL---LEMCKDV 109

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT-- 117
              +AYL     +  + R+      L +++   K+ DF LS  + + E     + +G+  
Sbjct: 110 CEGMAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEY---TSSVGSKF 163

Query: 118 -LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            + +  PE +    F+ KS+V++F V ++E+ +
Sbjct: 164 PVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYS 196

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 45.4 bits (107), Expect = 8e-06
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 17/159 (10%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE-----------PLLLKHR 52
           H +I+ L+G C +     ++ E    G L + +     P  E            +  K  
Sbjct: 80  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDL 139

Query: 53  LKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD 112
           +     +   + YL     +  + R+     +L  E NV K+ DF L+  +   + +   
Sbjct: 140 VSCTYQVARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNID-YYKK 195

Query: 113 TVMGTL--GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           T  G L   + APE +   V+  +S+V+SF V ++E+ T
Sbjct: 196 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 234

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 45.8 bits (108), Expect = 8e-06
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 13/100 (13%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           +A+D +H++  +H         R+ K   +L ++    KL DF   + + E      DT 
Sbjct: 153 LALDAIHSMGLIH---------RDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTA 203

Query: 115 MGTLGYCAPEYMRT----GVFNEKSNVFSFSVFLFELLTG 150
           +GT  Y +PE +++    G +  + + +S  VFLFE+L G
Sbjct: 204 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVG 243

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 25/180 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLL--LKHRLKIAMD 58
           Q+ + +I+++IG C E    +LV E  + G L ++ L   +   E  +  L H++ + M 
Sbjct: 52  QLDNPYIVRMIGIC-EAESWMLVMELAELGPL-NKFLQKNKHVTEKNITELVHQVSMGMK 109

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT- 117
            +    ++H    R +  RN     +L   ++ AK+ DF LS ++   E +      G  
Sbjct: 110 YLEETNFVH----RDLAARN-----VLLVTQHYAKISDFGLSKALGADENYYKAKTHGKW 160

Query: 118 -LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVKDVHDLVCP 166
            + + APE M    F+ KS+V+SF V ++E  +          G +V+ +++    + CP
Sbjct: 161 PVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGERMECP 220

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL-SISIPEGETHITDTV 114
           + +I  AL +LH    R I++R+ K   +L + E   KL D+ +    I  G+T  T T 
Sbjct: 102 SAEISLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDT--TSTF 156

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD 159
            GT  Y APE +R   +    + ++  V +FE++ G    D+V  
Sbjct: 157 CGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGM 201

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 17/159 (10%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE-----------PLLLKHR 52
           H +I+ L+G C +     ++ E    G L + +     P  E            L  K  
Sbjct: 83  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDL 142

Query: 53  LKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD 112
           +  A  +   + YL     +  + R+     +L  E+NV K+ DF L+  I   + +   
Sbjct: 143 VSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID-YYKK 198

Query: 113 TVMGTL--GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           T  G L   + APE +   ++  +S+V+SF V L+E+ T
Sbjct: 199 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 237

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 1   QMSHNHILKLIGCCLETPIP--ILVFESVQYGTLWD--RILGAPQPHFEPLLLKHRLKIA 56
           ++ H +I++L             +VFE + +    D   +L +P+  F    +K  +K  
Sbjct: 54  KLRHPNIVRLKEIVTSKGKGSIYMVFEYMDH----DLTGLLDSPEVKFTESQIKCYMK-- 107

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI-PEGETHITDTVM 115
             ++  L YLH      I+ R+ K S IL N + V KL DF L+           T+ V+
Sbjct: 108 -QLLEGLQYLH---SNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVI 163

Query: 116 GTLGYCAPE 124
            TL Y  PE
Sbjct: 164 -TLWYRPPE 171

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 27/148 (18%)

Query: 22  LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT 81
            V E    G L   I        +    +     A +I+ AL YLH    + I+ R+ K 
Sbjct: 79  FVLEYAPNGELLQYIR--KYGSLDEKCTRF---YAAEILLALEYLH---SKGIIHRDLKP 130

Query: 82  SCILFNEENVAKLFDF---------SLSISIPEGETHI----------TDTVMGTLGYCA 122
             IL +++   K+ DF         S   S     T+I            + +GT  Y +
Sbjct: 131 ENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVS 190

Query: 123 PEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           PE +      + S++++    ++++LTG
Sbjct: 191 PELLNEKPAGKSSDLWALGCIIYQMLTG 218

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 9/151 (5%)

Query: 5   NHILKLIGCCLETPIPILVFESVQYGTLWD-----RILGAPQPHFEPLLLKHRLKIAMDI 59
           +H+++L+G   +    +++ E +  G L       R      P   P  LK  +++A +I
Sbjct: 69  HHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEI 128

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD-TVMGTL 118
              +AYL+       V R+      +  E+   K+ DF ++  I E + +      +  +
Sbjct: 129 ADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV 185

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            + +PE ++ GVF   S+V+SF V L+E+ T
Sbjct: 186 RWMSPESLKDGVFTTYSDVWSFGVVLWEIAT 216

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 40  PQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL 99
           P   +E  LL +++ +A+D VH+   +H         R+ K++ I      + KL DF  
Sbjct: 165 PFQEYEVGLLFYQIVLALDEVHSRKMMH---------RDLKSANIFLMPTGIIKLGDFGF 215

Query: 100 SISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           S    +  +  +  +  GT  Y APE      +++K++++S  V L+ELLT
Sbjct: 216 SKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLT 266

Length = 478

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 7/96 (7%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +IV AL YLH    + IV+R+ K   IL ++E   KL DF  +  + +     T T+ 
Sbjct: 107 ASEIVCALEYLH---SKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDR----TWTLC 159

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW 151
           GT  Y APE +++   N+  + ++  + ++E+L G+
Sbjct: 160 GTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGY 195

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 16/154 (10%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ---PHFEPLLLKHRLKIAM 57
           Q+ + +I+++IG C E    +LV E    G L ++ L   +        + L H++ + M
Sbjct: 51  QLDNPYIVRMIGVC-EAEALMLVMEMASGGPL-NKFLSGKKDEITVSNVVELMHQVSMGM 108

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
             +    ++H    R +  RN     +L   ++ AK+ DF LS ++   +++      G 
Sbjct: 109 KYLEGKNFVH----RDLAARN-----VLLVNQHYAKISDFGLSKALGADDSYYKARSAGK 159

Query: 118 --LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
             L + APE +    F+ +S+V+S+ + ++E  +
Sbjct: 160 WPLKWYAPECINFRKFSSRSDVWSYGITMWEAFS 193

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 32/170 (18%)

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYC 121
           AL ++H    R I+ R+ K+  I   ++   KL DF ++  +      +  T +GT  Y 
Sbjct: 113 ALKHVH---DRKILHRDIKSQNIFLTKDGTIKLGDFGIA-RVLNSTVELARTCIGTPYYL 168

Query: 122 APEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFT 181
           +PE      +N KS++++    L+E+ T                     LK+ FE     
Sbjct: 169 SPEICENRPYNNKSDIWALGCVLYEMCT---------------------LKHAFEAGNMK 207

Query: 182 EIVDHIVVEDVSSIEKEQQLHASA---QVTFECIKDSPADRPSMVDVAKK 228
            +V  I+      +      H S     +  +  K +P DRPS+  + +K
Sbjct: 208 NLVLKIIRGSYPPVS----SHYSYDLRNLVSQLFKRNPRDRPSVNSILEK 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE-PLLLKHRLKIAMDI 59
           Q    ++ K  G  L+     ++ E +  G+  D +   P   F+   +LK  LK  +D 
Sbjct: 58  QCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEILK-GLDY 116

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
           +H+   +H         R+ K + +L +E+   KL DF ++  + + +    +T +GT  
Sbjct: 117 LHSEKKIH---------RDIKAANVLLSEQGDVKLADFGVAGQLTDTQIK-RNTFVGTPF 166

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           + APE ++   ++ K++++S  +   EL  G
Sbjct: 167 WMAPEVIQQSAYDSKADIWSLGITAIELAKG 197

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 52/210 (24%), Positives = 97/210 (46%), Gaps = 36/210 (17%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLK-IA--M 57
           Q  H +I+ L G   ++   ++V E ++ G+L D  L      F  + L   L+ IA  M
Sbjct: 61  QFDHPNIIHLEGVVTKSKPVMIVTEYMENGSL-DAFLRKHDGQFTVIQLVGMLRGIASGM 119

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
             +  + Y+H    R +  RN     IL N   V K+ DF LS  + +       T  G 
Sbjct: 120 KYLSDMGYVH----RDLAARN-----ILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 170

Query: 118 LG--YCAPEYMRTGVFNEKSNVFSFSVFLFELLT-----GWDVS--DLVKDVHD------ 162
           +   + APE +    F   S+V+S+ + ++E+++      W++S  D++K + +      
Sbjct: 171 IPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGYRLPA 230

Query: 163 -LVCPFSEY--LKNCFEDNR-----FTEIV 184
            + CP + +  + +C++ +R     F +IV
Sbjct: 231 PMDCPAALHQLMLDCWQKDRNERPKFEQIV 260

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
           +IA+ +V  L YL   +   I+ R+ K S +L N     KL DF +S  +      I  T
Sbjct: 99  RIAVAVVKGLTYL---WSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNS---IAKT 152

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            +GT  Y APE +    +   S+V+S  +   EL  G
Sbjct: 153 YVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALG 189

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 6/109 (5%)

Query: 50  KHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSIS-IPEGET 108
           +H    + +I  AL YLH    R I++R+ K   +L + E   KL D+ +    +  G+T
Sbjct: 96  EHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT 152

Query: 109 HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV 157
             T T  GT  Y APE +R   +    + ++  V +FE++ G    D+V
Sbjct: 153 --TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV 199

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 13/100 (13%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           +A+D +H++ ++H         R+ K   +L ++    KL DF   + +        DT 
Sbjct: 153 LALDAIHSMGFIH---------RDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTA 203

Query: 115 MGTLGYCAPEYMRT----GVFNEKSNVFSFSVFLFELLTG 150
           +GT  Y +PE +++    G +  + + +S  VFL+E+L G
Sbjct: 204 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVG 243

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 11/150 (7%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           M H H+++L+G CL +P   LV + + +G L D +      H + +  +  L   + I  
Sbjct: 66  MDHPHLVRLLGVCL-SPTIQLVTQLMPHGCLLDYV----HEHKDNIGSQLLLNWCVQIAK 120

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL--G 119
            + YL     R +V R+     +L    N  K+ DF L+  + EG+    +   G +   
Sbjct: 121 GMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLA-RLLEGDEKEYNADGGKMPIK 176

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           + A E +    F  +S+V+S+ V ++EL+T
Sbjct: 177 WMALECIHYRKFTHQSDVWSYGVTIWELMT 206

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 45  EPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP 104
           EPL L+  +  +  +   + +L     R  + R+     IL +E NV K+ DF L+  I 
Sbjct: 168 EPLTLEDLISYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIY 224

Query: 105 EGETHIT--DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           +   ++   D  +  L + APE +   V+  +S+V+SF V L+E+ +
Sbjct: 225 KDPDYVRKGDARL-PLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFS 270

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 18/230 (7%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H +++ LI          LVFE V + T+ D +   P      L      K    I+
Sbjct: 56  QLRHENLVNLIEVFRRKKRLYLVFEFVDH-TVLDDLEKYPNG----LDESRVRKYLFQIL 110

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             + + H      I+ R+ K   IL ++  V KL DF  + ++       TD V  T  Y
Sbjct: 111 RGIEFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYV-ATRWY 166

Query: 121 CAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDV----SDLVKDVHDLVC--PFSEYLKN 173
            APE +     +    ++++    + E+LTG  +    SD+ +  H + C        + 
Sbjct: 167 RAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQE 226

Query: 174 CFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTF--ECIKDSPADRPS 221
            F+ N     +    V+++  +EK     +   +    +C++  P DRPS
Sbjct: 227 IFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPS 276

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 11/150 (7%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + + H+ +L+G CL + +  L+ + + +G L D +    + H + +  ++ L   + I  
Sbjct: 66  VDNPHVCRLLGICLTSTVQ-LITQLMPFGCLLDYV----REHKDNIGSQYLLNWCVQIAK 120

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS--ISIPEGETHITDTVMGTLG 119
            + YL     R +V R+     +L       K+ DF L+  +   E E H  +     + 
Sbjct: 121 GMNYLE---ERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYH-AEGGKVPIK 176

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           + A E +   ++  +S+V+S+ V ++EL+T
Sbjct: 177 WMALESILHRIYTHQSDVWSYGVTVWELMT 206

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 29/137 (21%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL-SISIPEGETHITDTV 114
           A +I   L +LH    + I++R+ K   ++ + E   K+ DF +   +I  G+T  T T 
Sbjct: 107 AAEIAIGLFFLH---SKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKT--TRTF 161

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG---WDVSDLVKDVHDLVCPFSEYL 171
            GT  Y APE +    + +  + ++F V L+E+L G   +D  D                
Sbjct: 162 CGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGED---------------- 205

Query: 172 KNCFEDNRFTEIVDHIV 188
               ED  F  I++H V
Sbjct: 206 ----EDELFQSIMEHNV 218

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 5/97 (5%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
           K+++ ++  LAYL       I+ R+ K S IL N     KL DF +S  + +    + ++
Sbjct: 107 KVSIAVLRGLAYLRE--KHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS---MANS 161

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            +GT  Y +PE ++   ++ +S+++S  + L EL  G
Sbjct: 162 FVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIG 198

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 13/158 (8%)

Query: 1   QMSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHR-- 52
           +  H +++KLIG  L +      PIP+++   +++G L   +L   +   EP  L  +  
Sbjct: 57  EFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLL-MSRIGEEPFTLPLQTL 115

Query: 53  LKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD 112
           ++  +DI   + YL     +  + R+      + NE     + DF LS  I  G+ +   
Sbjct: 116 VRFMIDIASGMEYLS---SKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQG 172

Query: 113 TVMG-TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
                 + + A E +   V+   S+V++F V ++E++T
Sbjct: 173 CASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMT 210

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 74  IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNE 133
           IV+R+ K   +L +++   +L D  L++ + +G+T       GT GY APE ++   ++ 
Sbjct: 116 IVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT--ITQRAGTNGYMAPEILKEEPYSY 173

Query: 134 KSNVFSFSVFLFELLTG 150
             + F+    ++E++ G
Sbjct: 174 PVDWFAMGCSIYEMVAG 190

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 19/102 (18%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I   L  LH      IV+R+ K   IL ++    ++ D  L++ IPEGET I   V 
Sbjct: 108 AAEITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGET-IRGRV- 162

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSV-------FLFELLTG 150
           GT+GY APE ++    NE+   ++FS         ++E++ G
Sbjct: 163 GTVGYMAPEVVK----NER---YTFSPDWWGLGCLIYEMIEG 197

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEG---ETHITDTVMGTL 118
            L YLH       + R+ K   IL  E+   K+ DF +S S+ +G      +  T +GT 
Sbjct: 114 GLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTP 170

Query: 119 GYCAPEYM--RTGVFNEKSNVFSFSVFLFELLTG 150
            + APE M    G ++ K++++SF +   EL TG
Sbjct: 171 CWMAPEVMEQVHG-YDFKADIWSFGITAIELATG 203

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 34/172 (19%), Positives = 69/172 (40%), Gaps = 28/172 (16%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
           +I + ++  L  LH    + I+ R+ K++ IL    ++ K+ D  +S  + +    +  T
Sbjct: 107 RIFIQLLRGLQALH---EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKN---MAKT 160

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKN 173
            +GT  Y APE  +   ++ KS+++S    L+E+ T        + + DL        K 
Sbjct: 161 QIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATF-APPFEARSMQDL------RYKV 213

Query: 174 CFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV 225
                ++  I   I  +D+                   ++  P  RP+   +
Sbjct: 214 Q--RGKYPPI-PPIYSQDLQ------------NFIRSMLQVKPKLRPNCDKI 250

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 51  HRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL-SISIPEGETH 109
           H +  A +I   L +LH    + I++R+ K   ++ + E   K+ DF +   ++ +G T 
Sbjct: 102 HAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVT- 157

Query: 110 ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            T T  GT  Y APE +    + +  + ++F V L+E+L G
Sbjct: 158 -TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAG 197

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 14/104 (13%)

Query: 54  KIAMDIVHALAYL---HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHI 110
           K+ + IV AL YL   H      ++ R+ K S IL +     KL DF +S  + + +   
Sbjct: 118 KMTVAIVKALHYLKEKH-----GVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAK- 171

Query: 111 TDTVMGTLGYCAPEYM----RTGVFNEKSNVFSFSVFLFELLTG 150
                G   Y APE +        ++ +++V+S  + L EL TG
Sbjct: 172 -TRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATG 214

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
           ++V A  YLH    + I++R+ K   +L + +   K+ DF  +  +P+     T T+ GT
Sbjct: 126 ELVLAFEYLH---SKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDR----TFTLCGT 178

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW 151
             Y APE +++    +  + ++  V L+E + G+
Sbjct: 179 PEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGY 212

Length = 329

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 12/149 (8%)

Query: 4   HNHILKLIGCCLETPIPILVF-ESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
           H  I++  GC L     + +F E +  G++ D++       +  L      K    I+  
Sbjct: 63  HERIVQYYGC-LRDDETLSIFMEYMPGGSVKDQL-----KAYGALTETVTRKYTRQILEG 116

Query: 63  LAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT--DTVMGTLGY 120
           + YLH      IV R+ K + IL +     KL DF  S  +    +  T   +V GT  +
Sbjct: 117 VEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYW 173

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            +PE +    +  K++V+S    + E+LT
Sbjct: 174 MSPEVISGEGYGRKADVWSVGCTVVEMLT 202

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 26/169 (15%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLK-IA--M 57
           Q  H +I+ L G   ++   +++ E ++ G L D  L      F  + L   L+ IA  M
Sbjct: 61  QFDHPNIIHLEGVVTKSRPVMIITEFMENGAL-DSFLRQNDGQFTVIQLVGMLRGIAAGM 119

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
             +  + Y+H    R +  RN     IL N   V K+ DF LS  + +  +  T T   +
Sbjct: 120 KYLSEMNYVH----RDLAARN-----ILVNSNLVCKVSDFGLSRFLEDDTSDPTYT--SS 168

Query: 118 LG------YCAPEYMRTGVFNEKSNVFSFSVFLFELLT-----GWDVSD 155
           LG      + APE +    F   S+V+S+ + ++E+++      WD+S+
Sbjct: 169 LGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSN 217

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +IV  L +LH    + I++R+ K   ++ + +   K+ DF +      G+   + T  
Sbjct: 102 AAEIVCGLQFLH---SKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRAS-TFC 157

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  Y APE ++   +    + +SF V L+E+L G
Sbjct: 158 GTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIG 192

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 52  RLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHI 110
           +  IA ++V AL +LH      IV+R+ K   IL +      L DF LS  ++ + +T  
Sbjct: 99  KFYIA-ELVLALEHLH---KYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKT-- 152

Query: 111 TDTVMGTLGYCAPE-YMRTGVFNEKSNVFSFSVFLFELLTGW 151
           T+T  GT  Y APE  +    + +  + +S  V +FE+  GW
Sbjct: 153 TNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGW 194

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 14/98 (14%)

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD----- 112
           +IV AL YLH G    IV+R+ K   ++ +++   K+ DF L     EG   ITD     
Sbjct: 103 EIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLC---KEG---ITDAATMK 153

Query: 113 TVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           T  GT  Y APE +    +    + +   V ++E++ G
Sbjct: 154 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG 191

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--IT 111
           KI++ ++  L YL       I+ R+ K S IL N     KL DF +S     G+    + 
Sbjct: 103 KISIAVLRGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVS-----GQLIDSMA 155

Query: 112 DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           ++ +GT  Y +PE ++   +  +S+++S  + L E+  G
Sbjct: 156 NSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIG 194

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           + + ++  L YLH  F   I+ R+ K S +L  ++   K+ DF L+ +       +T  V
Sbjct: 113 LMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKV 169

Query: 115 MGTLGYCAPE 124
           + TL Y APE
Sbjct: 170 V-TLWYRAPE 178

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 16/102 (15%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           I  +++  L YLH       + R+ K + IL +EE   KL DF +S         +T T+
Sbjct: 103 ILREVLLGLEYLH---EEGKIHRDIKAANILLSEEGDVKLADFGVS-------GQLTSTM 152

Query: 115 ------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
                 +GT  + APE ++   ++EK++++S  +   EL  G
Sbjct: 153 SKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKG 194

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 5/94 (5%)

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSIS-IPEGETHITDTVMG 116
           +IV AL YLH    + +V+R+ K   ++ +++   K+ DF L    I +G T    T  G
Sbjct: 103 EIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT--MKTFCG 158

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           T  Y APE +    +    + +   V ++E++ G
Sbjct: 159 TPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG 192

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 21/156 (13%)

Query: 3   SHNHILKLIGCCLETP-IPILVFESVQYGTLWDRILGAPQPHFEPL---LLKHRLKIA-- 56
           SH ++L L+G CL +   P++V   +++G L + I         P    L+   L++A  
Sbjct: 54  SHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFI---RSETHNPTVKDLIGFGLQVAKG 110

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE---THITDT 113
           M+ + +  ++H    R +  RN    C+L +E    K+ DF L+  I + E    H    
Sbjct: 111 MEYLASKKFVH----RDLAARN----CML-DESFTVKVADFGLARDIYDKEYYSVHNHTG 161

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
               + + A E ++T  F  KS+V+SF V L+EL+T
Sbjct: 162 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 197

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 22/173 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q  H++I++L G        ++V E +  G L D  L   + H   L+    + +   + 
Sbjct: 62  QFDHSNIVRLEGVITRGNTMMIVTEYMSNGAL-DSFL---RKHEGQLVAGQLMGMLPGLA 117

Query: 61  HALAYL-HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG--- 116
             + YL   G+    V +      +L N + V K+  F     + E ++    T M    
Sbjct: 118 SGMKYLSEMGY----VHKGLAAHKVLVNSDLVCKISGFR---RLQEDKSEAIYTTMSGKS 170

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-----GWDVS--DLVKDVHD 162
            + + APE ++   F+  S+V+SF + ++E+++      WD+S  D++K V D
Sbjct: 171 PVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVED 223

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 22/154 (14%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYG--TLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           +SH  I+ LI          +V    +    T  DR          PL L+  + I   +
Sbjct: 143 ISHRAIINLIHAYRWKSTVCMVMPKYKCDLFTYVDRS--------GPLPLEQAITIQRRL 194

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV----- 114
           + ALAYLH    R I+ R+ KT  I  +E   A L DF  +  +        DT      
Sbjct: 195 LEALAYLH---GRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAH----PDTPQCYGW 247

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL 148
            GTL   +PE +    +  K++++S  + LFE+ 
Sbjct: 248 SGTLETNSPELLALDPYCAKTDIWSAGLVLFEMS 281

Length = 392

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 13/151 (8%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
           +H +I+ L+G C      +++ E   YG L +  L   +  F  L L+  L  +  +   
Sbjct: 97  NHENIVNLLGACTIGGPILVITEYCCYGDLLN-FLRRKRESF--LTLEDLLSFSYQVAKG 153

Query: 63  LAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT----L 118
           +A+L     +  + R+     +L     + K+ DF L+  I     ++   V G     +
Sbjct: 154 MAFLAS---KNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYV---VKGNARLPV 207

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            + APE +   V+  +S+V+S+ + L+E+ +
Sbjct: 208 KWMAPESIFNCVYTFESDVWSYGILLWEIFS 238

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 46  PLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPE 105
           PL   +   I  +I+  L YLH       + R+ K + +L +E+   KL DF ++  + +
Sbjct: 97  PLEETYIATILREILKGLDYLH---SERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD 153

Query: 106 GETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            +    +T +GT  + APE ++   ++ K++++S  +   EL  G
Sbjct: 154 TQIK-RNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKG 197

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
           +   ++V  +  LH    R I+ R+ K   +L ++    KL DF LS +           
Sbjct: 101 QYIAEVVLGVEDLH---QRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNG-----LENKK 152

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW 151
            +GT  Y APE +     ++ S+ +S    +FE L G+
Sbjct: 153 FVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGY 190

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL-SISIPEGETHITDTV 114
           A +I   L +LH    R I++R+ K   ++ + E   K+ DF +    + +G T  T T 
Sbjct: 107 AAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVT--TRTF 161

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            GT  Y APE +    + +  + +++ V L+E+L G
Sbjct: 162 CGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAG 197

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 66  LHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD-TVMGTLGYCAPE 124
           + F   R  + R+     IL +E NV K+ DF L+  I +   ++   +    L + APE
Sbjct: 187 MEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPE 246

Query: 125 YMRTGVFNEKSNVFSFSVFLFELLT 149
            +   V+  +S+V+SF V L+E+ +
Sbjct: 247 SIFDKVYTTQSDVWSFGVLLWEIFS 271

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 45  EPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP 104
           + L L+  +  +  +   + +L     R  + R+     IL +E NV K+ DF L+  I 
Sbjct: 174 KVLTLEDLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIY 230

Query: 105 EGETHIT--DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           +   ++   D  +  L + APE +   V+  +S+V+SF V L+E+ +
Sbjct: 231 KDPDYVRKGDARL-PLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS 276

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A ++  A+ YLH      I++R+ K   IL + +    L DF L     E E   T T  
Sbjct: 102 AAEVASAIGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPE-ETTSTFC 157

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  Y APE +R   ++   + +     L+E+L G
Sbjct: 158 GTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYG 192

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 28/164 (17%)

Query: 66  LHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEY 125
           +H+   R I+ R+ K   I F + N+ K+ DF +S  +  G   +  T  GT  Y +PE 
Sbjct: 119 VHYMHQRRILHRDLKAKNI-FLKNNLLKIGDFGVS-RLLMGSCDLATTFTGTPYYMSPEA 176

Query: 126 MRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVD 185
           ++   ++ KS+++S    L+E                + C     L + FE   F  +V 
Sbjct: 177 LKHQGYDSKSDIWSLGCILYE----------------MCC-----LAHAFEGQNFLSVVL 215

Query: 186 HIVVEDVSSIEK--EQQLHASAQVTFECIKDSPADRPSMVDVAK 227
            IV     S+ +   +QL++  Q      KD P+ RPS  ++ +
Sbjct: 216 RIVEGPTPSLPETYSRQLNSIMQSMLN--KD-PSLRPSAAEILR 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQ-YGTLWD-----RILGAPQPHFEPLLLKHRL-K 54
           +SH +IL ++  C+E   P  V      +G L       R+  A  P     L   +L  
Sbjct: 65  LSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQ---ALSTQQLVH 121

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKT-SCILFNEENVAKLFDFSLSISIPEGETH-ITD 112
           +A+ I   ++YLH    R ++ ++    +C++  E  V K+ D +LS  +   + H + D
Sbjct: 122 MAIQIACGMSYLH---KRGVIHKDIAARNCVIDEELQV-KITDNALSRDLFPMDYHCLGD 177

Query: 113 TVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
                + + A E +    ++  S+V+SF V L+EL+T
Sbjct: 178 NENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMT 214

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 19/155 (12%)

Query: 1   QMSHNHILKLIGCCL-ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAM-- 57
           ++ H +I++ +G    E  + I + E V  G+L  ++L       EP+       I +  
Sbjct: 58  KLQHPNIVQYLGTEREEDNLYIFL-ELVPGGSL-AKLLKKYGSFPEPV-------IRLYT 108

Query: 58  -DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG 116
             I+  L YLH    R  V R+ K + IL +   V KL DF ++  + E       +  G
Sbjct: 109 RQILLGLEYLH---DRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSF--AKSFKG 163

Query: 117 TLGYCAPEY-MRTGVFNEKSNVFSFSVFLFELLTG 150
           +  + APE   + G +   ++++S    + E+ TG
Sbjct: 164 SPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATG 198

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSIS-IPEGETHITDTV 114
           A +I  AL YLH      IV+R+ K   IL + +    L DF L    I + +T  T T 
Sbjct: 102 AAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDT--TTTF 156

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            GT  Y APE +R   ++   + +     L+E+L G
Sbjct: 157 CGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYG 192

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSIS-IPEGETHITDTVMG 116
           +IV AL YLH    R +V+R+ K   ++ +++   K+ DF L    I +G T    T  G
Sbjct: 103 EIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT--MKTFCG 157

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           T  Y APE +    +    + +   V ++E++ G
Sbjct: 158 TPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG 191

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
           K+++ ++  L YL       I+ R+ K S IL N     KL DF +S  + +    + ++
Sbjct: 107 KVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS---MANS 161

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            +GT  Y +PE ++   ++ +S+++S  + L E+  G
Sbjct: 162 FVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIG 198

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 29/165 (17%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTL-------WDRILGAPQPHFEPLLLKHRLK 54
           ++H ++L+ +G C+E+   +LV E    G L          +    Q     +L +   +
Sbjct: 52  LNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKD---VLQRMACE 108

Query: 55  IAMDI--VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSIS-IPEGETHIT 111
           +A  +  +H   ++H         RN    C L  + +V K+ D+ L++   PE      
Sbjct: 109 VASGLLWLHQADFIHSDL----ALRN----CQLTADLSV-KIGDYGLALEQYPEDYYITK 159

Query: 112 DTVMGTLGYCAPEYM-------RTGVFNEKSNVFSFSVFLFELLT 149
           D     L + APE +             +KSN++S  V ++EL T
Sbjct: 160 DCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFT 204

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 20/161 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTL-----------WDRILGAPQPHFEPLLL 49
           ++S  +I +L+G C   P   ++ E ++ G L                 +    F   LL
Sbjct: 75  RLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFS-TLL 133

Query: 50  KHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH 109
               +IA  + + L  L+F      V R+  T   L  +    K+ DF +S ++   + +
Sbjct: 134 YMATQIASGMRY-LESLNF------VHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYY 186

Query: 110 -ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            +       + + A E +  G F  KS+V++F V L+E+LT
Sbjct: 187 RVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILT 227

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 10/125 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H +I+ L           LVFE V+   L   +L A      P  ++        ++
Sbjct: 56  QLRHENIVNLKEAFRRKGRLYLVFEYVERTLL--ELLEASPGGLPPDAVR---SYIWQLL 110

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEG-ETHITDTVMGTLG 119
            A+AY H      I+ R+ K   IL +E  V KL DF  + ++     + +TD V  T  
Sbjct: 111 QAIAYCH---SHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYV-ATRW 166

Query: 120 YCAPE 124
           Y APE
Sbjct: 167 YRAPE 171

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I  AL YLH      I++R+ K   IL + +    L DF L     E     T T  
Sbjct: 102 AAEIASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSK-TTSTFC 157

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  Y APE +R   ++   + +     L+E+L G
Sbjct: 158 GTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYG 192

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           I  +I+  L YLH       + R+ K + +L +E    KL DF ++  + + +    +T 
Sbjct: 106 ILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK-RNTF 161

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           +GT  + APE ++   ++ K++++S  +   EL  G
Sbjct: 162 VGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKG 197

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL-SISIPEGETHITDTVMG 116
           +IV AL YLH      +V+R+ K   ++ +++   K+ DF L    I +G T    T  G
Sbjct: 103 EIVSALGYLH---SCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGAT--MKTFCG 157

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           T  Y APE +    +    + +   V ++E++ G
Sbjct: 158 TPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG 191

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 33/191 (17%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPH------------FEPLLL 49
           + H +I+ L+G C +     ++FE + +G L +  L    PH               L  
Sbjct: 65  LQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHE-FLVRNSPHSDVGAESGDETVKSSLDC 123

Query: 50  KHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH 109
              L IA+ I   + YL        V R+      L  E    K+ DF LS  I   + +
Sbjct: 124 SDFLHIAIQIAAGMEYLS---SHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYY 180

Query: 110 ITDTVMGT----LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GW---DVSD 155
               V       + +  PE +  G F  +S+++SF V L+E+ +       G+   +V +
Sbjct: 181 ---RVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIE 237

Query: 156 LVKDVHDLVCP 166
           +++    L CP
Sbjct: 238 MIRSRQLLPCP 248

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A  +V AL YLH      IV+R+ K   +L + +   K+ DF  +  +       T T+ 
Sbjct: 107 AAQVVLALEYLH---SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR----TYTLC 159

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  Y APE + +  + +  + ++  + ++E+L G
Sbjct: 160 GTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAG 194

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL-SISIPEGETHITDTV 114
           A ++  AL +LH      +++R+ K   IL + E   KL DF +    I  G T  T T 
Sbjct: 102 AAEVTLALMFLH---RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVT--TTTF 156

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            GT  Y APE ++   +    + ++  V ++E++ G
Sbjct: 157 CGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAG 192

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 11/146 (7%)

Query: 6   HILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAY 65
           ++ +L+G CL + +  LV + + YG L D +    + + + +  +  L   + I   ++Y
Sbjct: 70  YVCRLLGICLTSTVQ-LVTQLMPYGCLLDYV----RENKDRIGSQDLLNWCVQIAKGMSY 124

Query: 66  LHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS--ISIPEGETHITDTVMGTLGYCAP 123
           L       +V R+     +L    N  K+ DF L+  + I E E H  D     + + A 
Sbjct: 125 LE---EVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYH-ADGGKVPIKWMAL 180

Query: 124 EYMRTGVFNEKSNVFSFSVFLFELLT 149
           E +    F  +S+V+S+ V ++EL+T
Sbjct: 181 ESILHRRFTHQSDVWSYGVTVWELMT 206

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI-PEGETHITDT 113
           +  + + AL +LH      ++ R+ K+  +L   +   KL DF     I PE       T
Sbjct: 120 VCRECLQALEFLH---ANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKR--ST 174

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           ++GT  + APE +    +  K +++S  +   E++ G
Sbjct: 175 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I  AL YLH      IV+R+ K   IL + +    L DF L     E     T T  
Sbjct: 102 AAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE-HNGTTSTFC 157

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  Y APE +    ++   + +     L+E+L G
Sbjct: 158 GTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYG 192

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 24/154 (15%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIA---M 57
           Q+ H + ++  GC L      LV E    G+  D +    + H +PL     ++IA    
Sbjct: 71  QLRHPNTIEYKGCYLREHTAWLVMEYC-LGSASDIL----EVHKKPL---QEVEIAAICH 122

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDF-SLSISIPEGETHITDTVMG 116
             +  LAYLH       + R+ K   IL  E    KL DF S S+  P       ++ +G
Sbjct: 123 GALQGLAYLH---SHERIHRDIKAGNILLTEPGTVKLADFGSASLVSP------ANSFVG 173

Query: 117 TLGYCAPEY---MRTGVFNEKSNVFSFSVFLFEL 147
           T  + APE    M  G ++ K +V+S  +   EL
Sbjct: 174 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 207

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 5/147 (3%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H +++K +   +E     +V E    G L  R++   +     +  +   K  + + 
Sbjct: 58  QLDHPNVIKYLASFIENNELNIVLELADAGDL-SRMIKHFKKQKRLIPERTIWKYFVQLC 116

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            AL ++H    + I+ R+ K + +      V KL D  L       +T    +++GT  Y
Sbjct: 117 SALEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLG-RFFSSKTTAAHSLVGTPYY 172

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFEL 147
            +PE +    +N KS+++S    L+E+
Sbjct: 173 MSPERIHENGYNFKSDIWSLGCLLYEM 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           IA+D VH L Y+H         R+ K   IL +     +L DF   + + E  T  +   
Sbjct: 113 IAIDSVHQLHYVH---------RDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVA 163

Query: 115 MGTLGYCAPEYMRT-----GVFNEKSNVFSFSVFLFELLTG 150
           +GT  Y +PE ++      G +  + + +S  V ++E+L G
Sbjct: 164 VGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYG 204

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 31/149 (20%), Positives = 68/149 (45%), Gaps = 12/149 (8%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           ++ AL++LH    + ++ R+ K+  IL   +   KL DF     + + E     +++GT 
Sbjct: 124 VLKALSFLH---AQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSK-EVPRRKSLVGTP 179

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG----WDVSDL--VKDVHDLVCPFSEYLK 172
            + APE +    +  + +++S  + + E++ G    ++   L  +K + D + P  + L 
Sbjct: 180 YWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLKNLH 239

Query: 173 NCFEDNRFTEIVDHIVVEDVSSIEKEQQL 201
                 R    +D ++V D +      +L
Sbjct: 240 KV--SPRLRSFLDRMLVRDPAQRATAAEL 266

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 17/105 (16%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
           KIA+  V AL YL       I+ R+ K S IL +     KL DF +S         + D+
Sbjct: 111 KIAVATVKALNYLKEELK--IIHRDVKPSNILLDRNGNIKLCDFGIS-------GQLVDS 161

Query: 114 VMGTLG-----YCAPEYMRTGV---FNEKSNVFSFSVFLFELLTG 150
           +  T       Y APE +       ++ +S+V+S  + L+E+ TG
Sbjct: 162 IAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATG 206

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 16/150 (10%)

Query: 2   MSHNHILKLIGCCLETPIPILV---FESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMD 58
           ++H  ++++    +   I  +V   + S  Y  L  R          PL +   L I   
Sbjct: 114 VNHPSVIRMKDTLVSGAITCMVLPHYSSDLYTYLTKRS--------RPLPIDQALIIEKQ 165

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           I+  L YLH    + I+ R+ KT  I  N+ +   + D   +   P         + GT+
Sbjct: 166 ILEGLRYLH---AQRIIHRDVKTENIFINDVDQVCIGDLG-AAQFPVVAPAFLG-LAGTV 220

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELL 148
              APE +    +N K++++S  + LFE+L
Sbjct: 221 ETNAPEVLARDKYNSKADIWSAGIVLFEML 250

Length = 357

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 32/149 (21%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H +I++L+G C    +  LV +    G+L D +    + H + L  +  L   + I  
Sbjct: 66  LDHAYIVRLLGICPGASLQ-LVTQLSPLGSLLDHV----RQHRDSLDPQRLLNWCVQIAK 120

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMGTLGY 120
            + YL       +V RN     IL   +++ ++ DF ++ +  P+ + +        + +
Sbjct: 121 GMYYLE---EHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKW 177

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            A E +  G +  +S+V+S+ V ++E+++
Sbjct: 178 MALESILFGRYTHQSDVWSYGVTVWEMMS 206

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 9/101 (8%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           +A  I+  +AYLH    R IV R+ K S +L N     K+ DF +S  + +       +V
Sbjct: 173 VARQILSGIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSV 229

Query: 115 MGTLGYCAPEYMRTGVFNEK-----SNVFSFSVFLFELLTG 150
            GT+ Y +PE + T + +        +++S  V + E   G
Sbjct: 230 -GTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLG 269

Length = 353

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           + + ++ AL+YLH    + ++ R+ K+  IL   +   KL DF     + + E     ++
Sbjct: 123 VCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSK-EVPKRKSL 178

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           +GT  + APE +    +  + +++S  + + E++ G
Sbjct: 179 VGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDG 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI-PEGETHITDT 113
           +  + + AL +LH      ++ R+ K+  IL   +   KL DF     I PE       T
Sbjct: 120 VCRECLQALDFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKR--ST 174

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           ++GT  + APE +    +  K +++S  +   E++ G
Sbjct: 175 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           +  + + AL +LH      ++ R+ K+  IL   +   KL DF     I   ++  +  V
Sbjct: 121 VCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV 177

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            GT  + APE +    +  K +++S  +   E++ G
Sbjct: 178 -GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEG 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 54/236 (22%), Positives = 95/236 (40%), Gaps = 35/236 (14%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHF--EPLLLKHRL--KIA 56
           Q++H +++K     +E     +V E    G L   I      HF  +  L+  +   K  
Sbjct: 58  QLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMI-----KHFKKQKRLIPEKTVWKYF 112

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG 116
           + +  AL ++H    R ++ R+ K + +      V KL D  L       +T    +++G
Sbjct: 113 VQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLG-RFFSSKTTAAHSLVG 168

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFE 176
           T  Y +PE +    +N KS+++S    L+E+               L  PF     N + 
Sbjct: 169 TPYYMSPERIHENGYNFKSDIWSLGCLLYEMAA-------------LQSPFYGDKMNLYS 215

Query: 177 DNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV---DVAKKL 229
             +  E  D+     + S    ++L    Q+   CI   P  RP +    DVAK++
Sbjct: 216 LCKKIEQCDY---PPLPSDHYSEELR---QLVNMCINPDPEKRPDITYVYDVAKRM 265

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI-PEGETHITDTVMG 116
           + + AL +LH      ++ R+ K+  IL   +   KL DF     I PE       T++G
Sbjct: 123 ECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKR--STMVG 177

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           T  + APE +    +  K +++S  +   E++ G
Sbjct: 178 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 14/96 (14%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG-- 116
           I+  L Y+H      I+ R+ K S +  NE+   K+ DF L+        H  D + G  
Sbjct: 129 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLA-------RHTDDEMTGYV 178

Query: 117 -TLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTG 150
            T  Y APE M   + +N+  +++S    + ELLTG
Sbjct: 179 ATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTG 214

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 25/119 (21%)

Query: 55  IAMDIVHALAYLHFGFPRP----IVFRNFKTSCIL-----------------FNEENVAK 93
           I   ++HALAY H     P    ++ R+ K   I                   N   +AK
Sbjct: 123 ITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAK 182

Query: 94  LFDFSLSISIPEGETHITDTVMGTLGYCAPEYM--RTGVFNEKSNVFSFSVFLFELLTG 150
           + DF LS +I  G   +  + +GT  Y +PE +   T  +++KS++++    ++EL +G
Sbjct: 183 IGDFGLSKNI--GIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSG 239

Length = 1021

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 13/151 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHF--EPLLLKHRL--KIA 56
           Q++H +++K +   +E     +V E    G L   I      +F  +  L+  R   K  
Sbjct: 58  QLNHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIK-----YFKKQKRLIPERTVWKYF 112

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG 116
           + +  A+ ++H    R ++ R+ K + +      V KL D  L       +T    +++G
Sbjct: 113 VQLCSAVEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLG-RFFSSKTTAAHSLVG 168

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFEL 147
           T  Y +PE +    +N KS+++S    L+E+
Sbjct: 169 TPYYMSPERIHENGYNFKSDIWSLGCLLYEM 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           + + ++ AL+ LH    + ++ R+ K+  IL   +   KL DF     + + E     ++
Sbjct: 121 VCLAVLKALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK-EVPRRKSL 176

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           +GT  + APE +    +  + +++S  + + E++ G
Sbjct: 177 VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDG 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYC 121
           AL +LH      ++ R+ K   IL   +   KL DF +S +  +      DT +GT  + 
Sbjct: 115 ALNFLHSHK---VIHRDLKAGNILLTLDGDVKLADFGVS-AKNKSTLQKRDTFIGTPYWM 170

Query: 122 APEYMRTGVF-----NEKSNVFSFSVFLFEL 147
           APE +    F     + K++++S  + L EL
Sbjct: 171 APEVVACETFKDNPYDYKADIWSLGITLIEL 201

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.98
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.98
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.98
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.98
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.97
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.97
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.97
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.97
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.97
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.97
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.97
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.97
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.97
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.97
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.97
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.97
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.97
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.97
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.97
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.97
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.96
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.96
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.96
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.96
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.96
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.96
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.96
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.95
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.95
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.95
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.95
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.95
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.94
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.94
KOG1152	772	consensus Signal transduction serine/threonine kin	99.94
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.93
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.93
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.92
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.92
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.91
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.9
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.9
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.89
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.83
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.83
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.82
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.81
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.79
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.78
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.77
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.75
PRK09188	365	serine/threonine protein kinase; Provisional	99.75
PRK12274	218	serine/threonine protein kinase; Provisional	99.69
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.67
PRK10345	210	hypothetical protein; Provisional	99.62
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.62
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.61
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.61
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.61
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.59
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.58
PRK14879	211	serine/threonine protein kinase; Provisional	99.47
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.45
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.4
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.4
smart00090	237	RIO RIO-like kinase.	99.39
KOG1243	690	consensus Protein kinase [General function predict	99.34
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.28
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.24
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.2
COG4248	637	Uncharacterized protein with protein kinase and he	99.2
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.11
KOG2137	700	consensus Protein kinase [Signal transduction mech	99.05
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.05
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.02
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.93
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.92
KOG3087	229	consensus Serine/threonine protein kinase [General	98.9
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.85
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.83
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.73
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.7
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.68
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.58
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.51
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.31
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.17
PRK09902	216	hypothetical protein; Provisional	98.15
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.08
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.97
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.93
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.91
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.33
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	97.26
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.14
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.12
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.01
KOG1093	725	consensus Predicted protein kinase (contains TBC a	97.0
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	96.8
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	96.69
PLN02876	822	acyl-CoA dehydrogenase	96.34
KOG1235	538	consensus Predicted unusual protein kinase [Genera	96.2
KOG2268	465	consensus Serine/threonine protein kinase [Signal	95.97
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	95.69
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	95.09
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	95.06
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	94.77
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	94.48
PRK05231	319	homoserine kinase; Provisional	94.41
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	94.24
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	94.24
PRK10271	188	thiK thiamine kinase; Provisional	93.94
PF01636	239	APH: Phosphotransferase enzyme family This family	93.87
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	93.83
PHA03111	444	Ser/Thr kinase; Provisional	93.82
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	93.77
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	93.51
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	93.43
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	93.36
PF10140	359	YukC: WXG100 protein secretion system (Wss), prote	93.03
PLN02236	344	choline kinase	92.54
COG2334	331	Putative homoserine kinase type II (protein kinase	92.21
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	92.08
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	91.6
PRK06148	1013	hypothetical protein; Provisional	90.56
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	89.5
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	89.41
PRK06149	972	hypothetical protein; Provisional	88.0
PRK09550	401	mtnK methylthioribose kinase; Reviewed	87.8
COG4499	434	Predicted membrane protein [Function unknown]	87.5
PRK11768	325	serine/threonine protein kinase; Provisional	87.02
KOG1236	565	consensus Predicted unusual protein kinase [Genera	85.77
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	85.76
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	83.24

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=4e-49  Score=306.33  Aligned_cols=200  Identities=24%  Similarity=0.294  Sum_probs=175.0

Q ss_pred             CCCcccceeeEEEEeCCC-ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MSHNHILKLIGCCLETPI-PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~-~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      .+|||||.+||.|+.++. ..|+||||++|||.++++..     +++++....+++.++++||.|||.  +++|+|||||
T Consensus       134 ~~spyIV~~ygaF~~~~~~isI~mEYMDgGSLd~~~k~~-----g~i~E~~L~~ia~~VL~GL~YLh~--~~~IIHRDIK  206 (364)
T KOG0581|consen  134 CQSPYIVGFYGAFYSNGEEISICMEYMDGGSLDDILKRV-----GRIPEPVLGKIARAVLRGLSYLHE--ERKIIHRDIK  206 (364)
T ss_pred             CCCCCeeeEeEEEEeCCceEEeehhhcCCCCHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHhh--ccCeeeccCC
Confidence            479999999999999995 99999999999999999876     679999999999999999999994  4999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|+|++..|++||+|||.+..+..+   ...++.||..|||||.+.+..|+.++||||||+.++|+.+|+.|+...   
T Consensus       207 PsNlLvNskGeVKicDFGVS~~lvnS---~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~---  280 (364)
T KOG0581|consen  207 PSNLLVNSKGEVKICDFGVSGILVNS---IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPP---  280 (364)
T ss_pred             HHHeeeccCCCEEeccccccHHhhhh---hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCc---
Confidence            99999999999999999999876544   456889999999999999999999999999999999999999998543   


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                   ......+.++...++.+.........+++++.+||..||++||.+|||+.|+++
T Consensus       281 -------------~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~  334 (364)
T KOG0581|consen  281 -------------NPPYLDIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQ  334 (364)
T ss_pred             -------------CCCCCCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                         112335567777777755443333358999999999999999999999999987

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-46  Score=302.98  Aligned_cols=209  Identities=29%  Similarity=0.457  Sum_probs=174.1

Q ss_pred             CCCCcccceeeEEEEeCC-CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC-eeecc
Q 044155            1 QMSHNHILKLIGCCLETP-IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP-IVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~-~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~-i~H~d   78 (239)
                      +++|||||+++|++.+.. ..++||||+++|+|.++++....   ..++...+.+++.||+.|+.|||   +.+ |+|||
T Consensus        95 ~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~---~~l~~~~~l~~aldiArGm~YLH---~~~~iIHrD  168 (362)
T KOG0192|consen   95 RLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKKRK---RKLPLKVRLRIALDIARGMEYLH---SEGPIIHRD  168 (362)
T ss_pred             hCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhccc---CCCCHHHHHHHHHHHHHHHHHHh---cCCCeeecc
Confidence            489999999999999887 78999999999999999987422   67999999999999999999999   888 99999


Q ss_pred             ccCcceeecCCC-ceeEcccccccccCCCCcceeecccccccccCccccc--cCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           79 FKTSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR--TGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        79 lk~~nil~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~--~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |||+|+|++.++ .+||+|||+++...... ...+...||+.|||||++.  ...++.++||||||+++|||+||..||.
T Consensus       169 LK~~NiLv~~~~~~~KI~DFGlsr~~~~~~-~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~  247 (362)
T KOG0192|consen  169 LKSDNILVDLKGKTLKIADFGLSREKVISK-TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFE  247 (362)
T ss_pred             cChhhEEEcCCCCEEEECCCccceeecccc-ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCC
Confidence            999999999997 99999999997654321 1122367999999999999  5689999999999999999999999886


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ....                     ............++..+...++.+..+|.+||..||+.||++.+++..|+.+...
T Consensus       248 ~~~~---------------------~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~  306 (362)
T KOG0192|consen  248 DLAP---------------------VQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSH  306 (362)
T ss_pred             CCCH---------------------HHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHh
Confidence            5442                     2222233333333333445778899999999999999999999999999998875


Q ss_pred             hc
Q 044155          236 LS  237 (239)
Q Consensus       236 ~~  237 (239)
                      ..
T Consensus       307 ~~  308 (362)
T KOG0192|consen  307 IS  308 (362)
T ss_pred             hc
Confidence            54

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-46  Score=304.76  Aligned_cols=207  Identities=26%  Similarity=0.396  Sum_probs=176.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|+|||+++|+|..+...+|||||++.|+|.++++...+   ..+...+.+.++.|||+|++||.   ++++|||||.
T Consensus       257 ~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~yLr~~~~---~~l~~~~Ll~~a~qIaeGM~YLe---s~~~IHRDLA  330 (468)
T KOG0197|consen  257 KLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLDYLRTREG---GLLNLPQLLDFAAQIAEGMAYLE---SKNYIHRDLA  330 (468)
T ss_pred             hCcccCeEEEEEEEecCCceEEEEEecccCcHHHHhhhcCC---CccchHHHHHHHHHHHHHHHHHH---hCCccchhhh
Confidence            58999999999999998899999999999999999998444   67889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      ++|||++++..+||+|||+++...+..........-|..|+|||.+..++++.+||||||||++||++| |+.||..   
T Consensus       331 ARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~---  407 (468)
T KOG0197|consen  331 ARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPG---  407 (468)
T ss_pred             hhheeeccCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCC---
Confidence            999999999999999999999655444444445556889999999999999999999999999999999 5455533   


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                                        ....+.+.. +...++-+.+..+++.+.++|..||+.+|++|||++.+...|+.+...
T Consensus       408 ------------------msn~ev~~~-le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~  464 (468)
T KOG0197|consen  408 ------------------MSNEEVLEL-LERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFTS  464 (468)
T ss_pred             ------------------CCHHHHHHH-HhccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence                              333344433 333444455568899999999999999999999999999999988764

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-45  Score=302.14  Aligned_cols=195  Identities=22%  Similarity=0.353  Sum_probs=172.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||+++++|++.+++|||.|+|..++|..++++.     +.+++.+++.++.||+.||.|||   +++|+|||||
T Consensus        74 ~L~HpnIV~f~~~FEDs~nVYivLELC~~~sL~el~Krr-----k~ltEpEary~l~QIv~GlkYLH---~~~IiHRDLK  145 (592)
T KOG0575|consen   74 SLKHPNIVQFYHFFEDSNNVYIVLELCHRGSLMELLKRR-----KPLTEPEARYFLRQIVEGLKYLH---SLGIIHRDLK  145 (592)
T ss_pred             hcCCCcEEeeeeEeecCCceEEEEEecCCccHHHHHHhc-----CCCCcHHHHHHHHHHHHHHHHHH---hcCceecccc
Confidence            589999999999999999999999999999999999865     78999999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      ..|++++++.++||+|||+|..... ..+...+.+|||-|.|||++.....+..+||||+||++|.++.|++||+     
T Consensus       146 LGNlfL~~~~~VKIgDFGLAt~le~-~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFe-----  219 (592)
T KOG0575|consen  146 LGNLFLNENMNVKIGDFGLATQLEY-DGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFE-----  219 (592)
T ss_pred             hhheeecCcCcEEecccceeeeecC-cccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcc-----
Confidence            9999999999999999999987642 2244567889999999999999999999999999999999999999985     


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                      .....+....+....+.-+  ...+.+.++||..+|+.||.+|||+++|+.
T Consensus       220 ----------------tk~vkety~~Ik~~~Y~~P--~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~  268 (592)
T KOG0575|consen  220 ----------------TKTVKETYNKIKLNEYSMP--SHLSAEAKDLIRKLLRPNPSERPSLDEVLD  268 (592)
T ss_pred             ----------------cchHHHHHHHHHhcCcccc--cccCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                            3345566666666655433  367778899999999999999999999986

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.6e-46  Score=290.98  Aligned_cols=197  Identities=21%  Similarity=0.338  Sum_probs=164.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||+++++|+.....||||||++||.|.+++-.+     ..+.+..-+.++.|++.|+.|||   ++||+|||||
T Consensus       232 kL~HP~IV~~~d~f~~~ds~YmVlE~v~GGeLfd~vv~n-----k~l~ed~~K~~f~Qll~avkYLH---~~GI~HRDiK  303 (475)
T KOG0615|consen  232 KLSHPNIVRIKDFFEVPDSSYMVLEYVEGGELFDKVVAN-----KYLREDLGKLLFKQLLTAVKYLH---SQGIIHRDIK  303 (475)
T ss_pred             hcCCCCEEEEeeeeecCCceEEEEEEecCccHHHHHHhc-----cccccchhHHHHHHHHHHHHHHH---HcCcccccCC
Confidence            589999999999999999999999999999999999876     56778888999999999999999   9999999999


Q ss_pred             CcceeecCC---CceeEcccccccccCCCCcceeecccccccccCccccccCC---cccccchhhhhhHHHHHhcCCCCc
Q 044155           81 TSCILFNEE---NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV---FNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        81 ~~nil~~~~---~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+|||+..+   ..+||+|||+|+....  .....+++||+.|.|||++.+..   +..+.||||+||++|-+++|..||
T Consensus       304 PeNILl~~~~e~~llKItDFGlAK~~g~--~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPF  381 (475)
T KOG0615|consen  304 PENILLSNDAEDCLLKITDFGLAKVSGE--GSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPF  381 (475)
T ss_pred             cceEEeccCCcceEEEecccchhhcccc--ceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCc
Confidence            999999887   4689999999987643  33456889999999999998655   334789999999999999999998


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .....                    .+.+.+++..+.+.  +..-...+++..++|.+||..||++|||++|+++
T Consensus       382 S~~~~--------------------~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  382 SEEYT--------------------DPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             ccccC--------------------CccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence            64321                    11122333333332  2333577888999999999999999999999987

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-44  Score=290.23  Aligned_cols=224  Identities=40%  Similarity=0.669  Sum_probs=182.6

Q ss_pred             CCCCcccceeeEEEEeCC-CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETP-IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~-~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++|||+|+++|||.+.+ ..++|+||+++|||.+.++.....   .++|..+.+|+.++|.||+|||+.+...|+||||
T Consensus       127 ~l~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~---~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDi  203 (361)
T KOG1187|consen  127 RLRHPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGE---PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDI  203 (361)
T ss_pred             cCCCcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCCCCCC---CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCC
Confidence            579999999999999988 499999999999999999876431   7899999999999999999999876778999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecc-cccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTV-MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~-~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      ||.|||+|.+.++||+|||+++..+.... ..... .||.+|+|||+...+..+.++||||||+++.|++||+.+.+...
T Consensus       204 KssNILLD~~~~aKlsDFGLa~~~~~~~~-~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~  282 (361)
T KOG1187|consen  204 KSSNILLDEDFNAKLSDFGLAKLGPEGDT-SVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSR  282 (361)
T ss_pred             CHHHeeECCCCCEEccCccCcccCCcccc-ceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCC
Confidence            99999999999999999999966543111 11122 79999999999999999999999999999999999998876544


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhh-cCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVV-EDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      .....  .+.+|...........++++..+. ..+...   .....+..+..+|++.+|.+||++.||++.|..+.
T Consensus       283 ~~~~~--~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~---~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~  353 (361)
T KOG1187|consen  283 PRGEL--SLVEWAKPLLEEGKLREIVDPRLKEGEYPDE---KEVKKLAELALRCLRPDPKERPTMSQVVKELEGIL  353 (361)
T ss_pred             Ccccc--cHHHHHHHHHHCcchhheeCCCccCCCCChH---HHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhc
Confidence            21111  145555556666677777777765 232211   45566889999999999999999999999996654

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1e-45  Score=277.79  Aligned_cols=207  Identities=21%  Similarity=0.305  Sum_probs=174.5

Q ss_pred             CCCCcccceeeE-EEEeCCC-ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC--eee
Q 044155            1 QMSHNHILKLIG-CCLETPI-PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP--IVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~-~~~~~~~-~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~--i~H   76 (239)
                      ||+|||||++++ .|.+.+. ..||||+|.+|+|...++...... ..++++++.+++.|++.||.++|+-. .+  |.|
T Consensus        74 QL~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLsqmIk~~K~qk-r~ipE~~Vwk~f~QL~~AL~~cH~~~-~r~~VmH  151 (375)
T KOG0591|consen   74 QLNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLSQMIKHFKKQK-RLIPEKTVWKYFVQLCRALYHCHSKI-PRGTVMH  151 (375)
T ss_pred             hcCCchHHHHHHHhhhccchhhHHHHHhhcccCHHHHHHHHHhcc-ccCchHHHHHHHHHHHHHHHHHhccc-cccceee
Confidence            689999999999 5656655 789999999999999888654322 67899999999999999999999311 34  999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||||.||+++.+|.+||+|||+++.+. +.........|||.||+||.+...+|+.+|||||+||++|||..-..||. 
T Consensus       152 RDIKPaNIFl~~~gvvKLGDfGL~r~l~-s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~-  229 (375)
T KOG0591|consen  152 RDIKPANIFLTANGVVKLGDFGLGRFLS-SKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFY-  229 (375)
T ss_pred             ccCcchheEEcCCCceeeccchhHhHhc-chhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcc-
Confidence            9999999999999999999999998874 34445667889999999999999999999999999999999999988775 


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                                          ......+..++..+++.+......+..+..+|..|+..||..||+.-.+++.++.
T Consensus       230 --------------------g~n~~~L~~KI~qgd~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di~~  284 (375)
T KOG0591|consen  230 --------------------GDNLLSLCKKIEQGDYPPLPDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDIQS  284 (375)
T ss_pred             --------------------cccHHHHHHHHHcCCCCCCcHHHhhhHHHHHHHHHccCCcccCCCcchHHHHHHH
Confidence                                3355566777777777655556889999999999999999999986556655544

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-44  Score=289.52  Aligned_cols=196  Identities=20%  Similarity=0.289  Sum_probs=166.1

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .+|+|||.+++.|.-++..|+||||++||+|.|.+..      ..+++.+++.++.++++||+|||   .++|+|||||.
T Consensus       327 ~~H~NiVnfl~Sylv~deLWVVMEym~ggsLTDvVt~------~~~~E~qIA~Icre~l~aL~fLH---~~gIiHrDIKS  397 (550)
T KOG0578|consen  327 LHHPNIVNFLDSYLVGDELWVVMEYMEGGSLTDVVTK------TRMTEGQIAAICREILQGLKFLH---ARGIIHRDIKS  397 (550)
T ss_pred             ccchHHHHHHHHhcccceeEEEEeecCCCchhhhhhc------ccccHHHHHHHHHHHHHHHHHHH---hcceeeecccc
Confidence            5899999999999989999999999999999999976      45889999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +|||++.+|.+||+|||++....... .......||+.|||||+.....|.++.||||||++++||+.|.+||-.     
T Consensus       398 DnILL~~~g~vKltDFGFcaqi~~~~-~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYln-----  471 (550)
T KOG0578|consen  398 DNILLTMDGSVKLTDFGFCAQISEEQ-SKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLN-----  471 (550)
T ss_pred             ceeEeccCCcEEEeeeeeeecccccc-CccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccC-----
Confidence            99999999999999999987664333 256678899999999999999999999999999999999999999732     


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                     +.....+..-...+......+...+..+++|+.+||..|+.+|+||.|||+
T Consensus       472 ---------------E~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  472 ---------------ENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKELLE  522 (550)
T ss_pred             ---------------CChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHHhc
Confidence                           111111111111222222334577889999999999999999999999997

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-43  Score=296.90  Aligned_cols=210  Identities=25%  Similarity=0.397  Sum_probs=178.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCC---------CCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPH---------FEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~---------~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      .|+|||||+++|+|..++..++|+|||.+|+|.++++......         +.++...+.+.|+.||+.|+.||-   +
T Consensus       545 ~l~H~nIVrLlGVC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs---~  621 (774)
T KOG1026|consen  545 ELQHPNIVRLLGVCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLS---S  621 (774)
T ss_pred             hccCCCeEEEEEEEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            4799999999999999999999999999999999998653311         234889999999999999999999   9


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCcceee-cccccccccCccccccCCcccccchhhhhhHHHHHhc-
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD-TVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~-~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-  149 (239)
                      +.+|||||..+|+||+++..|||+|||+++..-....+... ...-+++|||||.+..++|+++|||||+||++||+++ 
T Consensus       622 ~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsy  701 (774)
T KOG1026|consen  622 HHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSY  701 (774)
T ss_pred             CcccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhcc
Confidence            99999999999999999999999999999765444444333 4456899999999999999999999999999999998 


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||.++                     ...+++.-+..+.. ...+..++.++.+||.+||+..|++|||+.|+-.+|
T Consensus       702 G~QPy~gl---------------------Sn~EVIe~i~~g~l-L~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L  759 (774)
T KOG1026|consen  702 GKQPYYGL---------------------SNQEVIECIRAGQL-LSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRL  759 (774)
T ss_pred             ccCccccc---------------------chHHHHHHHHcCCc-ccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHH
Confidence            65665433                     34456655555555 455668899999999999999999999999999999


Q ss_pred             HHHHHh
Q 044155          230 RQIYRS  235 (239)
Q Consensus       230 ~~l~~~  235 (239)
                      +.....
T Consensus       760 ~~~~~~  765 (774)
T KOG1026|consen  760 QAWAQA  765 (774)
T ss_pred             HHHHhc
Confidence            987654

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=5e-43  Score=285.17  Aligned_cols=203  Identities=23%  Similarity=0.374  Sum_probs=171.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|+||+.|.|+|.....+|||||||..|-|..+++..     ..++......|..+|+.|+.|||   .+.|+|||||
T Consensus       168 kLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka~-----~~itp~llv~Wsk~IA~GM~YLH---~hKIIHRDLK  239 (904)
T KOG4721|consen  168 KLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKAG-----RPITPSLLVDWSKGIAGGMNYLH---LHKIIHRDLK  239 (904)
T ss_pred             hccCcceeeEeeeecCCceeEEeeeccccccHHHHHhcc-----CccCHHHHHHHHHHhhhhhHHHH---HhhHhhhccC
Confidence            589999999999999999999999999999999999987     67888999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      .-||||+.+..+||+|||.++...+-  .-...+.||..|||||++...+.++|.|||||||++|||+||..||......
T Consensus       240 SPNiLIs~~d~VKIsDFGTS~e~~~~--STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdss  317 (904)
T KOG4721|consen  240 SPNILISYDDVVKISDFGTSKELSDK--STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSS  317 (904)
T ss_pred             CCceEeeccceEEeccccchHhhhhh--hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchh
Confidence            99999999999999999998765432  2234678999999999999999999999999999999999999998644422


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      --..+                 +.    .+....+.+..+++.++-||.+||+-.|..|||+.+++.-|+-+..
T Consensus       318 AIIwG-----------------VG----sNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~HldIa~p  370 (904)
T KOG4721|consen  318 AIIWG-----------------VG----SNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHLDIASP  370 (904)
T ss_pred             eeEEe-----------------cc----CCcccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCH
Confidence            11111                 00    1112233345677889999999999999999999999998875443

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-43  Score=274.05  Aligned_cols=201  Identities=25%  Similarity=0.315  Sum_probs=159.4

Q ss_pred             CCCCcccceeeEEEEeCC--CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLETP--IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~--~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +|+|||||+++|......  .+++.|||+.+|||.+++.+..    ..+++..++.+..|+++||+|||   +++++|+|
T Consensus        70 ~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~GsL~~~~~~~g----~~l~E~~v~~ytr~iL~GL~ylH---s~g~vH~D  142 (313)
T KOG0198|consen   70 RLNHPNIVQYYGSSSSRENDEYNIFMEYAPGGSLSDLIKRYG----GKLPEPLVRRYTRQILEGLAYLH---SKGIVHCD  142 (313)
T ss_pred             hCCCCCEEeeCCccccccCeeeEeeeeccCCCcHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCEeccC
Confidence            478999999999754444  5889999999999999998863    25899999999999999999999   99999999


Q ss_pred             ccCcceeecC-CCceeEcccccccccCC--CCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCc
Q 044155           79 FKTSCILFNE-ENVAKLFDFSLSISIPE--GETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        79 lk~~nil~~~-~~~~~l~dfg~~~~~~~--~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |||+|||++. ++.+||+|||.+.....  ..........||+.|||||++..+ ....++|||||||++.||+||+.||
T Consensus       143 iK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW  222 (313)
T KOG0198|consen  143 IKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPW  222 (313)
T ss_pred             cccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcc
Confidence            9999999999 69999999999876642  112224467899999999999853 3445999999999999999999998


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      ....                    ......-.+......+..+...+...++|+..|+.+||++||||+++++.
T Consensus       223 ~~~~--------------------~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~h  276 (313)
T KOG0198|consen  223 SEFF--------------------EEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEH  276 (313)
T ss_pred             hhhc--------------------chHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhC
Confidence            6430                    00011111111112223344677889999999999999999999999973

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-42  Score=271.20  Aligned_cols=145  Identities=27%  Similarity=0.444  Sum_probs=134.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      .|+|||||.+++++++.+..|+|||||.||+|.+++++.     ..+++...+.++.|++.||++||   +++|+|||||
T Consensus        65 el~H~nIV~l~d~~~~~~~i~lVMEyC~gGDLs~yi~~~-----~~l~e~t~r~Fm~QLA~alq~L~---~~~IiHRDLK  136 (429)
T KOG0595|consen   65 ELKHPNIVRLLDCIEDDDFIYLVMEYCNGGDLSDYIRRR-----GRLPEATARHFMQQLASALQFLH---ENNIIHRDLK  136 (429)
T ss_pred             hcCCcceeeEEEEEecCCeEEEEEEeCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCC
Confidence            378999999999999999999999999999999999987     67999999999999999999999   9999999999


Q ss_pred             CcceeecCC------CceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           81 TSCILFNEE------NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        81 ~~nil~~~~------~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+|||++..      -.+||+|||+++.+..+.  ...+.+|++.|||||++....|+.|+|+||+|+++|++++|+.||
T Consensus       137 PQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~--~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf  214 (429)
T KOG0595|consen  137 PQNILLSTTARNDTSPVLKIADFGFARFLQPGS--MAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPF  214 (429)
T ss_pred             cceEEeccCCCCCCCceEEecccchhhhCCchh--HHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCc
Confidence            999999875      458999999999886443  355778999999999999999999999999999999999999998


Q ss_pred             c
Q 044155          155 D  155 (239)
Q Consensus       155 ~  155 (239)
                      +
T Consensus       215 ~  215 (429)
T KOG0595|consen  215 D  215 (429)
T ss_pred             c
Confidence            6

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-41  Score=268.74  Aligned_cols=207  Identities=21%  Similarity=0.300  Sum_probs=164.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||++++..|..+...|+||.||.+||+.++++....   ..+.+..++.++.++++||.|||   .+|.+|||+|+
T Consensus        81 ~~HPNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~~---~Gl~E~~Ia~iLre~LkaL~YLH---~~G~IHRdvKA  154 (516)
T KOG0582|consen   81 IDHPNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYYP---DGLEEASIATILREVLKALDYLH---QNGHIHRDVKA  154 (516)
T ss_pred             cCCCCcceEEEEEEecceeEEeehhhcCCcHHHHHHHHcc---ccccHHHHHHHHHHHHHHHHHHH---hcCceeccccc
Confidence            6899999999999999999999999999999999998754   56899999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcce--e-ecccccccccCcccccc--CCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHI--T-DTVMGTLGYCAPEYMRT--GVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~--~-~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      .|||++.+|.+||+|||.+..+..+..+.  . ..+.|+++|||||++..  ..|+.|+||||||++..|+.+|..||..
T Consensus       155 gnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k  234 (516)
T KOG0582|consen  155 GNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSK  234 (516)
T ss_pred             ccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCccc
Confidence            99999999999999999876664443221  2 56789999999999543  4699999999999999999999999875


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...+..+..        .. ++..+....    ...........+..+.++|..||.+||.+||||++++.
T Consensus       235 ~pPmkvLl~--------tL-qn~pp~~~t----~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  235 YPPMKVLLL--------TL-QNDPPTLLT----SGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             CChHHHHHH--------Hh-cCCCCCccc----ccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence            553322211        00 011110000    00111122345568999999999999999999999986

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-41  Score=269.97  Aligned_cols=201  Identities=19%  Similarity=0.264  Sum_probs=161.4

Q ss_pred             CCCCcccceeeEEEEe----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CCee
Q 044155            1 QMSHNHILKLIGCCLE----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~i~   75 (239)
                      +++||||++++|++.+    ....++||||+++|+|.+++...     ..+++.....++.|++.||.|||   . .+++
T Consensus        74 ~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~-----~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~  145 (283)
T PHA02988         74 RIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKE-----KDLSFKTKLDMAIDCCKGLYNLY---KYTNKP  145 (283)
T ss_pred             hcCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHhhC-----CCCChhHHHHHHHHHHHHHHHHH---hcCCCC
Confidence            4799999999999877    34678999999999999999865     56788899999999999999999   6 4889


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc--CCcccccchhhhhhHHHHHhcCCCC
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT--GVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      ||||||+||+++.++.+||+|||++.......    ....++..|+|||.+.+  ..++.++||||||+++|||++|..|
T Consensus       146 Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~P  221 (283)
T PHA02988        146 YKNLTSVSFLVTENYKLKIICHGLEKILSSPP----FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIP  221 (283)
T ss_pred             CCcCChhhEEECCCCcEEEcccchHhhhcccc----ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCC
Confidence            99999999999999999999999987543221    23457889999999976  6789999999999999999999999


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      |.....                     .+..............+...+..+.+++.+||+.||.+|||++++++.|+++.
T Consensus       222 f~~~~~---------------------~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        222 FENLTT---------------------KEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             CCCCCH---------------------HHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence            864321                     11111111111111111245677999999999999999999999999999875


Q ss_pred             H
Q 044155          234 R  234 (239)
Q Consensus       234 ~  234 (239)
                      .
T Consensus       281 ~  281 (283)
T PHA02988        281 F  281 (283)
T ss_pred             h
Confidence            3

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-41  Score=275.70  Aligned_cols=194  Identities=25%  Similarity=0.369  Sum_probs=163.3

Q ss_pred             CC-CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MS-HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~-H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++ ||||+++++++......++||||+.+|+|.+++...     .++.+..+++++.|++.|++|+|   .++|+|||||
T Consensus        76 ~~~HpnI~~l~ev~~t~~~~~ivmEy~~gGdL~~~i~~~-----g~l~E~~ar~~F~Qlisav~y~H---~~gi~HRDLK  147 (370)
T KOG0583|consen   76 LRSHPNIIRLLEVFATPTKIYIVMEYCSGGDLFDYIVNK-----GRLKEDEARKYFRQLISAVAYCH---SRGIVHRDLK  147 (370)
T ss_pred             hccCCCEeEEEEEEecCCeEEEEEEecCCccHHHHHHHc-----CCCChHHHHHHHHHHHHHHHHHH---hCCEeeCCCC
Confidence            45 999999999999999999999999999999999884     67888999999999999999999   9999999999


Q ss_pred             CcceeecCC-CceeEcccccccccCCCCcceeecccccccccCccccccCC-cc-cccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEE-NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FN-EKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~-~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~-~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+|+|++.+ +.+||+|||++.... .......+..||+.|+|||++.+.. |+ .++||||+|+++|.|++|..||+. 
T Consensus       148 ~ENilld~~~~~~Kl~DFG~s~~~~-~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d-  225 (370)
T KOG0583|consen  148 PENILLDGNEGNLKLSDFGLSAISP-GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDD-  225 (370)
T ss_pred             HHHEEecCCCCCEEEeccccccccC-CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCC-
Confidence            999999999 999999999998763 2223456788999999999999876 75 789999999999999999888853 


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHH-HHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQ-LHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          .........+..+.+.-+  ... +.++.+++.+|+..||.+|+|+.++++
T Consensus       226 --------------------~~~~~l~~ki~~~~~~~p--~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~  274 (370)
T KOG0583|consen  226 --------------------SNVPNLYRKIRKGEFKIP--SYLLSPEARSLIEKMLVPDPSTRITLLEILE  274 (370)
T ss_pred             --------------------ccHHHHHHHHhcCCccCC--CCcCCHHHHHHHHHHcCCCcccCCCHHHHhh
Confidence                                222333333333332211  122 778899999999999999999999984

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-41  Score=279.00  Aligned_cols=207  Identities=26%  Similarity=0.388  Sum_probs=174.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++||++....+.++|||+|.||+|.++++...    ..++..++..++.+.+.||+|||   .++++||||.
T Consensus       217 ~l~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~----~~v~~~ek~~~~~~AA~Gl~YLh---~k~~IHRDIA  289 (474)
T KOG0194|consen  217 QLNHPNVVRFYGVAVLEEPLMLVMELCNGGSLDDYLKKNK----KSLPTLEKLRFCYDAARGLEYLH---SKNCIHRDIA  289 (474)
T ss_pred             hCCCCCEEEEEEEEcCCCccEEEEEecCCCcHHHHHHhCC----CCCCHHHHHHHHHHHHhHHHHHH---HCCCcchhHh
Confidence            5899999999999999999999999999999999999864    35999999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      .+|+|++.++.+||+|||+++... ..........-+..|+|||.+....++.++|||||||++||+++ |..||.+.. 
T Consensus       290 ARNcL~~~~~~vKISDFGLs~~~~-~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~-  367 (474)
T KOG0194|consen  290 ARNCLYSKKGVVKISDFGLSRAGS-QYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMK-  367 (474)
T ss_pred             HHHheecCCCeEEeCccccccCCc-ceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCC-
Confidence            999999999999999999987653 11111112346889999999999999999999999999999999 666765433 


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                                          ..++...+....++...+...+..+..++.+||..+|++|||+.++.+.|+.+....
T Consensus       368 --------------------~~~v~~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~  424 (474)
T KOG0194|consen  368 --------------------NYEVKAKIVKNGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKK  424 (474)
T ss_pred             --------------------HHHHHHHHHhcCccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhcc
Confidence                                224444444444444444567788899999999999999999999999999987653

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-42  Score=273.47  Aligned_cols=214  Identities=18%  Similarity=0.242  Sum_probs=165.3

Q ss_pred             CCC-CcccceeeEEEEeCC-CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMS-HNHILKLIGCCLETP-IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~-H~niv~l~~~~~~~~-~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +|+ |||||++.+++.++. ..++|||||+ .+|+++++..+    ..+++..++.|+.||++||+|+|   .+|+.|||
T Consensus        64 kln~hpniikL~Evi~d~~~~L~fVfE~Md-~NLYqLmK~R~----r~fse~~irnim~QilqGL~hiH---k~GfFHRD  135 (538)
T KOG0661|consen   64 KLNPHPNIIKLKEVIRDNDRILYFVFEFMD-CNLYQLMKDRN----RLFSESDIRNIMYQILQGLAHIH---KHGFFHRD  135 (538)
T ss_pred             hcCCCCcchhhHHHhhccCceEeeeHHhhh-hhHHHHHhhcC----CcCCHHHHHHHHHHHHHHHHHHH---hcCccccc
Confidence            467 999999999999888 8999999998 89999999873    78999999999999999999999   99999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      +||+|||+..+..+||+|||+++......  +-+....|.+|+|||++.. +.|+.+.|+|++||+++|+.+-++.|.+.
T Consensus       136 lKPENiLi~~~~~iKiaDFGLARev~Skp--PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~  213 (538)
T KOG0661|consen  136 LKPENILISGNDVIKIADFGLAREVRSKP--PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGA  213 (538)
T ss_pred             CChhheEecccceeEecccccccccccCC--CcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCC
Confidence            99999999988899999999998763322  2346678999999998875 56999999999999999999999888776


Q ss_pred             cccccccccchhhhhhhhhccchhhhh--hhhhh--------cCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIV--DHIVV--------EDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .+.+..... .+.+..+. ...+.+..  ...+.        .+..... ...+.+..++|.+|+.+||.+||||.|.++
T Consensus       214 sE~Dqi~KI-c~VLGtP~-~~~~~eg~~La~~mnf~~P~~~~~~l~~L~-p~~s~~~~~li~~ll~WDP~kRpTA~~al~  290 (538)
T KOG0661|consen  214 SEIDQIYKI-CEVLGTPD-KDSWPEGYNLASAMNFRFPQVKPSPLKDLL-PNASSEAASLIERLLAWDPDKRPTASQALQ  290 (538)
T ss_pred             cHHHHHHHH-HHHhCCCc-cccchhHHHHHHHhccCCCcCCCCChHHhC-cccCHHHHHHHHHHhcCCCccCccHHHHhc
Confidence            554433221 01111111 11111111  11100        0001111 247788899999999999999999999987

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.4e-41  Score=271.83  Aligned_cols=199  Identities=23%  Similarity=0.311  Sum_probs=175.6

Q ss_pred             CCCCcccceeeEEEEeCCC-ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETPI-PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~-~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++|||||.+++.|+.++. .+|||+||+||++.+.+.+..+   ..++++.+..|+.|++.|+.|||   +.+|+||||
T Consensus        59 ~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~l~~~i~~~k~---~~f~E~~i~~~~~Q~~~av~ylH---~~~iLHRDl  132 (426)
T KOG0589|consen   59 KLLHPNIVEYKDSFEEDGQLLCIVMEYCEGGDLAQLIKEQKG---VLFPEERILKWFVQILLAVNYLH---ENRVLHRDL  132 (426)
T ss_pred             hccCCCeeeeccchhcCCceEEEEEeecCCCCHHHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHH---hhhhhcccc
Confidence            5799999999999999888 8999999999999999998865   67899999999999999999999   999999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+.||+++.++.++|+|||+++.+.... .......||+.|++||.+.+.+|+.|+|||||||++|||++-+++|     
T Consensus       133 K~~Nifltk~~~VkLgDfGlaK~l~~~~-~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF-----  206 (426)
T KOG0589|consen  133 KCANIFLTKDKKVKLGDFGLAKILNPED-SLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAF-----  206 (426)
T ss_pred             hhhhhhccccCceeecchhhhhhcCCch-hhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhccccc-----
Confidence            9999999999999999999998875432 2456778999999999999999999999999999999999996665     


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                                      .......++.++....+.+ .+...+.++..+|..|+..+|..||++.+|+..
T Consensus       207 ----------------~a~~m~~Li~ki~~~~~~P-lp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  207 ----------------KASNMSELILKINRGLYSP-LPSMYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             ----------------CccchHHHHHHHhhccCCC-CCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence                            4455566666666666433 345778899999999999999999999999985

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-40  Score=269.44  Aligned_cols=194  Identities=21%  Similarity=0.282  Sum_probs=163.6

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .||.|++||--|.+...+|+|+||+++|+|.++|++.     ..+++...+.++.+|+.||+|||   .+||+||||||+
T Consensus       132 ~hPgivkLy~TFQD~~sLYFvLe~A~nGdll~~i~K~-----Gsfde~caR~YAAeIldAleylH---~~GIIHRDlKPE  203 (604)
T KOG0592|consen  132 GHPGIVKLYFTFQDEESLYFVLEYAPNGDLLDLIKKY-----GSFDETCARFYAAEILDALEYLH---SNGIIHRDLKPE  203 (604)
T ss_pred             CCCCeEEEEEEeecccceEEEEEecCCCcHHHHHHHh-----CcchHHHHHHHHHHHHHHHHHHH---hcCceeccCChh
Confidence            8999999999999999999999999999999999987     67999999999999999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCc------------ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcC
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGET------------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG  150 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g  150 (239)
                      |||++.++.++|+|||.++.+.....            .....++||-.|.+||++.....+..+|||+|||++|+|+.|
T Consensus       204 NILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG  283 (604)
T KOG0592|consen  204 NILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAG  283 (604)
T ss_pred             heeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcC
Confidence            99999999999999999987743211            112568999999999999999999999999999999999999


Q ss_pred             CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .+||....                     -.-..+.++.-.+..  +...++...+||...|..||++|+|+.++.+
T Consensus       284 ~PPFra~N---------------------eyliFqkI~~l~y~f--p~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~  337 (604)
T KOG0592|consen  284 QPPFRAAN---------------------EYLIFQKIQALDYEF--PEGFPEDARDLIKKLLVRDPSDRLTSQQIKA  337 (604)
T ss_pred             CCCCcccc---------------------HHHHHHHHHHhcccC--CCCCCHHHHHHHHHHHccCccccccHHHHhh
Confidence            99985322                     111222222222211  1245577889999999999999999988865

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=3.7e-41  Score=255.55  Aligned_cols=218  Identities=21%  Similarity=0.281  Sum_probs=171.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ||+|+|+|.++++|......++|+|||+. ++.+-+....    ..++.....+++.|++.|+.|+|   .++++|||||
T Consensus        57 qLkH~NLVnLiEVFrrkrklhLVFE~~dh-TvL~eLe~~p----~G~~~~~vk~~l~Q~l~ai~~cH---k~n~IHRDIK  128 (396)
T KOG0593|consen   57 QLKHENLVNLIEVFRRKRKLHLVFEYCDH-TVLHELERYP----NGVPSELVKKYLYQLLKAIHFCH---KNNCIHRDIK  128 (396)
T ss_pred             hcccchHHHHHHHHHhcceeEEEeeecch-HHHHHHHhcc----CCCCHHHHHHHHHHHHHHhhhhh---hcCeecccCC
Confidence            68999999999999999999999999984 6666676654    56888999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+|||++.+|.+||+|||+|+.+... ...-+....|.+|+|||.+.+ ..|....||||+||++.||++|.+.|.+-++
T Consensus       129 PENILit~~gvvKLCDFGFAR~L~~p-gd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SD  207 (396)
T KOG0593|consen  129 PENILITQNGVVKLCDFGFARTLSAP-GDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSD  207 (396)
T ss_pred             hhheEEecCCcEEeccchhhHhhcCC-cchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcch
Confidence            99999999999999999999887532 222346678999999999988 6799999999999999999999999988777


Q ss_pred             ccccc------ccchhhhhhhhhccchhhhhhhhhhcCCCcHHH--HHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLV------CPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEK--EQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .+.+.      +.+.......|..+....-+.--..++..+...  ...+..+.+++..|++.||.+|+|-+|++.
T Consensus       208 iDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  208 IDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             HHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhc
Confidence            65442      233333444454444333222111122221111  244567889999999999999999999875

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=8.5e-41  Score=259.82  Aligned_cols=189  Identities=24%  Similarity=0.336  Sum_probs=161.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||+||+++-.|.+....++|+||+.||.|.-.+.+.     ..+++..++-++..|+.||.|||   +++|+|||||
T Consensus        81 ~v~hPFiv~l~ysFQt~~kLylVld~~~GGeLf~hL~~e-----g~F~E~~arfYlaEi~lAL~~LH---~~gIiyRDlK  152 (357)
T KOG0598|consen   81 KIKHPFIVKLIYSFQTEEKLYLVLDYLNGGELFYHLQRE-----GRFSEDRARFYLAEIVLALGYLH---SKGIIYRDLK  152 (357)
T ss_pred             hCCCCcEeeeEEecccCCeEEEEEeccCCccHHHHHHhc-----CCcchhHHHHHHHHHHHHHHHHH---hCCeeeccCC
Confidence            479999999999999999999999999999999999876     67999999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.+|.++|+|||+++..... ...+..++||+.|||||++....++..+|-||||+++|+|++|.+||.     
T Consensus       153 PENILLd~~GHi~LtDFgL~k~~~~~-~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~-----  226 (357)
T KOG0598|consen  153 PENILLDEQGHIKLTDFGLCKEDLKD-GDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFY-----  226 (357)
T ss_pred             HHHeeecCCCcEEEeccccchhcccC-CCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCc-----
Confidence            99999999999999999999754322 223556899999999999999999999999999999999999988874     


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP  220 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp  220 (239)
                                      .....+.++++..+.... .+...+.+.++++...+..||.+|.
T Consensus       227 ----------------~~~~~~~~~~I~~~k~~~-~p~~ls~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  227 ----------------AEDVKKMYDKILKGKLPL-PPGYLSEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             ----------------CccHHHHHHHHhcCcCCC-CCccCCHHHHHHHHHHhccCHHHhc
Confidence                            333345555555544221 1223667889999999999999996

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=3.5e-40  Score=268.69  Aligned_cols=209  Identities=21%  Similarity=0.390  Sum_probs=159.7

Q ss_pred             CCcccceeeEEEEeCC-CceEEEEEccCCChhhhhhcCCCC---------------------------------------
Q 044155            3 SHNHILKLIGCCLETP-IPILVFESVQYGTLWDRILGAPQP---------------------------------------   42 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~-~~~iv~e~~~~~sL~~~l~~~~~~---------------------------------------   42 (239)
                      +||||+++++++...+ ..++||||+++|+|.+++......                                       
T Consensus        69 ~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (338)
T cd05102          69 NHLNVVNLLGACTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSR  148 (338)
T ss_pred             cCcceeeEEeEecCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccc
Confidence            7999999999987644 578999999999999998753210                                       


Q ss_pred             ------------------CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccC
Q 044155           43 ------------------HFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP  104 (239)
Q Consensus        43 ------------------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~  104 (239)
                                        ....++...+..++.|++.||.|||   +.+++||||||+||+++.++.++|+|||+++...
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~  225 (338)
T cd05102         149 FQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIY  225 (338)
T ss_pred             cccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCccceEEEcCCCcEEEeecccccccc
Confidence                              0134777888999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccccccccccchhhhhhhhhccchhh
Q 044155          105 EGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTE  182 (239)
Q Consensus       105 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (239)
                      ..... ......+++.|+|||++.+..++.++||||||+++|||++ |..||........       . ..         
T Consensus       226 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~-------~-~~---------  288 (338)
T cd05102         226 KDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEE-------F-CQ---------  288 (338)
T ss_pred             cCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHH-------H-HH---------
Confidence            22111 1223345678999999998889999999999999999997 8888754321100       0 00         


Q ss_pred             hhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          183 IVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                          .+........+...++.+.+++.+||+.||.+|||+.|+++.|+++..+
T Consensus       289 ----~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~~~  337 (338)
T cd05102         289 ----RLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFSALVEILGDLLQE  337 (338)
T ss_pred             ----HHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence                0000000011123456789999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-40  Score=288.34  Aligned_cols=211  Identities=24%  Similarity=0.421  Sum_probs=173.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC--CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP--HFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++|||||+++|++.+....+|++|||++|+|..++++.+..  ....+..+..+.++.|||.|+.||+   ++++||||
T Consensus       751 ~f~HpNiv~liGv~l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe---~~~fvHRD  827 (1025)
T KOG1095|consen  751 KFDHPNIVSLIGVCLDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLE---SKHFVHRD  827 (1025)
T ss_pred             cCCCcceeeEEEeecCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHH---hCCCcCcc
Confidence            479999999999999999999999999999999999986331  1257889999999999999999999   99999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCccee-ecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETHIT-DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~  156 (239)
                      |..+|+|++....+||+|||+++..-....+.. ....-+..|||||.+....++.++|||||||++||++| |..||..
T Consensus       828 LAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~  907 (1025)
T KOG1095|consen  828 LAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPS  907 (1025)
T ss_pred             hhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999984433333322 23356789999999999999999999999999999999 5456543


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      .                     ...++......+- +...+..++..+.++|..||+.+|++||++..+++.+.++.+..
T Consensus       908 ~---------------------~n~~v~~~~~~gg-RL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~~  965 (1025)
T KOG1095|consen  908 R---------------------SNFEVLLDVLEGG-RLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNAA  965 (1025)
T ss_pred             c---------------------chHHHHHHHHhCC-ccCCCCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhhhhh
Confidence            2                     2223333233322 33344577888999999999999999999999999998887643

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=2.2e-39  Score=255.54  Aligned_cols=203  Identities=17%  Similarity=0.245  Sum_probs=160.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..++..++||||+++++|.+++....    ..+++..+..++.|++.||+|||   +.+++|+|||
T Consensus        62 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~l~~~~~~~~~~~i~~al~~lH---~~~iiH~dik  134 (266)
T cd05064          62 QFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHE----GQLVAGQLMGMLPGLASGMKYLS---EMGYVHKGLA  134 (266)
T ss_pred             cCCCCCcCeEEEEEecCCCcEEEEEeCCCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccc
Confidence            4689999999999999999999999999999999987642    46889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++++|||.+...............++..|+|||.+.+..++.++||||||+++|++++ |..||.....
T Consensus       135 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~  214 (266)
T cd05064         135 AHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSG  214 (266)
T ss_pred             HhhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCH
Confidence            999999999999999999865432221111122334678999999998899999999999999999775 8888854321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      .                     +........ .....+...+..+.+++.+||..+|.+|||++++.+.|.++
T Consensus       215 ~---------------------~~~~~~~~~-~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         215 Q---------------------DVIKAVEDG-FRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             H---------------------HHHHHHHCC-CCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence            1                     111111111 01111224566789999999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.4e-40  Score=248.23  Aligned_cols=194  Identities=23%  Similarity=0.333  Sum_probs=165.5

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .||||+++.++++.+...++|+|.|+.|.|.|++.+.     ..++++..++++.|+.+|+.|||   .++||||||||+
T Consensus        81 GHP~II~l~D~yes~sF~FlVFdl~prGELFDyLts~-----VtlSEK~tR~iMrqlfegVeylH---a~~IVHRDLKpE  152 (411)
T KOG0599|consen   81 GHPYIIDLQDVYESDAFVFLVFDLMPRGELFDYLTSK-----VTLSEKETRRIMRQLFEGVEYLH---ARNIVHRDLKPE  152 (411)
T ss_pred             CCCcEEEeeeeccCcchhhhhhhhcccchHHHHhhhh-----eeecHHHHHHHHHHHHHHHHHHH---HhhhhhcccChh
Confidence            7999999999999999999999999999999999876     77899999999999999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc------CCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT------GVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||++++.+++|+|||++.....+.  .....+|||+|+|||.+..      ..|+...|+|++|+++|.++.|.+||.-
T Consensus       153 NILlddn~~i~isDFGFa~~l~~Ge--kLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwH  230 (411)
T KOG0599|consen  153 NILLDDNMNIKISDFGFACQLEPGE--KLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWH  230 (411)
T ss_pred             heeeccccceEEeccceeeccCCch--hHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhH
Confidence            9999999999999999998876654  3557789999999999853      3488899999999999999999999742


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      -.                     -.-....+..+.+  .+++=.+.+...+++|++||..||.+|.|++|.++
T Consensus       231 Rk---------------------QmlMLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~La  282 (411)
T KOG0599|consen  231 RK---------------------QMLMLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALA  282 (411)
T ss_pred             HH---------------------HHHHHHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence            11                     1112223333333  23333577888999999999999999999999986

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-41  Score=268.99  Aligned_cols=196  Identities=20%  Similarity=0.296  Sum_probs=164.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++++||.++||.+..+...|++||||.||++.+.++..     ..+.+.....++.+++.|+.|||   ..+.+|||||
T Consensus        67 ~~~~~~it~yygsyl~g~~LwiiMey~~gGsv~~lL~~~-----~~~~E~~i~~ilre~l~~l~ylH---~~~kiHrDIK  138 (467)
T KOG0201|consen   67 QCDSPNITEYYGSYLKGTKLWIIMEYCGGGSVLDLLKSG-----NILDEFEIAVILREVLKGLDYLH---SEKKIHRDIK  138 (467)
T ss_pred             hcCcchHHhhhhheeecccHHHHHHHhcCcchhhhhccC-----CCCccceeeeehHHHHHHhhhhh---hcceeccccc
Confidence            468899999999999999999999999999999999876     34577888889999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      +.||++..+|.+|++|||.+.++..- .....++.||+.|||||++.+..|+.++||||||++.+||.+|.+|+...-.+
T Consensus       139 aanil~s~~g~vkl~DfgVa~ql~~~-~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPm  217 (467)
T KOG0201|consen  139 AANILLSESGDVKLADFGVAGQLTNT-VKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPM  217 (467)
T ss_pred             ccceeEeccCcEEEEecceeeeeech-hhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcc
Confidence            99999999999999999998776432 33347889999999999999889999999999999999999999997533321


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                        +...++    .+...+.....+++.+++||..||++||+.||||.+++.
T Consensus       218 ------------------rvlflI----pk~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  218 ------------------RVLFLI----PKSAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             ------------------eEEEec----cCCCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhh
Confidence                              111111    122222233367788999999999999999999999986

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.9e-40  Score=263.62  Aligned_cols=217  Identities=18%  Similarity=0.208  Sum_probs=167.5

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +|+||||++|.+...+.  +.+|+|+|||+ -+|.-++....    -.++..+++.++.|++.||.|+|   .++++|||
T Consensus       172 ~l~HpNIikL~eivt~~~~~siYlVFeYMd-hDL~GLl~~p~----vkft~~qIKc~mkQLl~Gl~~cH---~~gvlHRD  243 (560)
T KOG0600|consen  172 RLDHPNIIKLEEIVTSKLSGSIYLVFEYMD-HDLSGLLSSPG----VKFTEPQIKCYMKQLLEGLEYCH---SRGVLHRD  243 (560)
T ss_pred             hcCCCcccceeeEEEecCCceEEEEEeccc-chhhhhhcCCC----cccChHHHHHHHHHHHHHHHHHh---hcCeeecc
Confidence            58999999999998866  68999999998 58988886543    57899999999999999999999   99999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      ||..||||+++|.+||+|||+++.........-+..+.|.+|+|||.+++. .|+...|+||.|||+.||+.|++++++-
T Consensus       244 IK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~  323 (560)
T KOG0600|consen  244 IKGSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGR  323 (560)
T ss_pred             ccccceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCc
Confidence            999999999999999999999998766555556677889999999999985 5999999999999999999999999876


Q ss_pred             cccccccccchhhhhhhhhccchh--hhhhhhhhc---CCCcH---HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFT--EIVDHIVVE---DVSSI---EKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~---~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .+...+...|.-....  ....|.  ++-......   .+...   .....+....+|+..+|..||.+|.||.++++
T Consensus       324 tEveQl~kIfklcGSP--~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  324 TEVEQLHKIFKLCGSP--TEDYWPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             cHHHHHHHHHHHhCCC--ChhccccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence            6554443322111100  011111  000000000   11111   11245567789999999999999999999886

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=3.1e-40  Score=268.66  Aligned_cols=194  Identities=24%  Similarity=0.357  Sum_probs=172.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      .|+|||||.++++|++..+.|+|+||+. |+|..++...     ..+++..+..++.++..||.|||   +.+|.|||+|
T Consensus        57 ~lkHpniv~m~esfEt~~~~~vVte~a~-g~L~~il~~d-----~~lpEe~v~~~a~~LVsaL~yLh---s~rilhrd~k  127 (808)
T KOG0597|consen   57 SLKHPNIVEMLESFETSAHLWVVTEYAV-GDLFTILEQD-----GKLPEEQVRAIAYDLVSALYYLH---SNRILHRDMK  127 (808)
T ss_pred             hcCCcchhhHHHhhcccceEEEEehhhh-hhHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHH---hcCcccccCC
Confidence            4799999999999999999999999998 5999999876     67999999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||+...+.+|++|||+++.+..+ +...+...|||-|||||...+.+|+..+|+||+||++||+++|++||.     
T Consensus       128 PqniLl~~~~~~KlcdFg~Ar~m~~~-t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~-----  201 (808)
T KOG0597|consen  128 PQNILLEKGGTLKLCDFGLARAMSTN-TSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFY-----  201 (808)
T ss_pred             cceeeecCCCceeechhhhhhhcccC-ceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCch-----
Confidence            99999999999999999999887553 334556679999999999999999999999999999999999988873     


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                      ...+..++..+..++...+  ...+..+.+++...|.+||..|.|+.+++.
T Consensus       202 ----------------a~si~~Lv~~I~~d~v~~p--~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~  250 (808)
T KOG0597|consen  202 ----------------ARSITQLVKSILKDPVKPP--STASSSFVNFLQGLLIKDPAQRLTWTDLLG  250 (808)
T ss_pred             ----------------HHHHHHHHHHHhcCCCCCc--ccccHHHHHHHHHHhhcChhhcccHHHHhc
Confidence                            4455567777777666544  377888999999999999999999999986

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9e-40  Score=269.96  Aligned_cols=193  Identities=23%  Similarity=0.341  Sum_probs=167.8

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      |.||||+++|+++++...+++|.||+++|-|.+++.+.     +++++.++++++.||+.|+.|+|   ..+|+||||||
T Consensus        69 i~HpnVl~LydVwe~~~~lylvlEyv~gGELFdylv~k-----G~l~e~eaa~ff~QIi~gv~yCH---~~~icHRDLKp  140 (786)
T KOG0588|consen   69 IEHPNVLRLYDVWENKQHLYLVLEYVPGGELFDYLVRK-----GPLPEREAAHFFRQILDGVSYCH---AFNICHRDLKP  140 (786)
T ss_pred             hcCCCeeeeeeeeccCceEEEEEEecCCchhHHHHHhh-----CCCCCHHHHHHHHHHHHHHHHHh---hhcceeccCCc
Confidence            58999999999999999999999999999999999887     67999999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      +|+|++..+.+||+|||+|.....+  ....+.+|++.|.|||++.+.+| +.++||||.|||+|.++||+.||+     
T Consensus       141 ENlLLd~~~nIKIADFGMAsLe~~g--klLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFd-----  213 (786)
T KOG0588|consen  141 ENLLLDVKNNIKIADFGMASLEVPG--KLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFD-----  213 (786)
T ss_pred             hhhhhhcccCEeeeccceeecccCC--ccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCC-----
Confidence            9999999999999999998664333  33556789999999999999885 578999999999999999988775     


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                      ++....+..++..+.+.-+  ...+.+.++|+++|+..||++|.|.+||+.
T Consensus       214 ----------------DdNir~LLlKV~~G~f~MP--s~Is~eaQdLLr~ml~VDp~~RiT~~eI~k  262 (786)
T KOG0588|consen  214 ----------------DDNIRVLLLKVQRGVFEMP--SNISSEAQDLLRRMLDVDPSTRITTEEILK  262 (786)
T ss_pred             ----------------CccHHHHHHHHHcCcccCC--CcCCHHHHHHHHHHhccCccccccHHHHhh
Confidence                            3344455555555554322  467788999999999999999999999986

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=4.1e-39  Score=253.58  Aligned_cols=204  Identities=22%  Similarity=0.369  Sum_probs=161.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......+++|||+++++|.+++.....   ..+++..++.++.|++.||+|||   +.+++|+|||
T Consensus        58 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlk  131 (263)
T cd05052          58 EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNR---QEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLA  131 (263)
T ss_pred             hCCCCChhheEEEEcCCCCcEEEEEeCCCCcHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccC
Confidence            47899999999999999999999999999999999976532   46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+................+..|+|||.+.+..++.++||||||+++|+|++ |..||.....
T Consensus       132 p~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~  211 (263)
T cd05052         132 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL  211 (263)
T ss_pred             cceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH
Confidence            999999999999999999987654332211122234567999999988889999999999999999998 8777653211


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                                           .+...... .......+...+..+.+++.+||+.||++|||+.++++.|+++
T Consensus       212 ---------------------~~~~~~~~-~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         212 ---------------------SQVYELLE-KGYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             ---------------------HHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence                                 00000000 0001111123457789999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=6.4e-39  Score=254.96  Aligned_cols=206  Identities=24%  Similarity=0.399  Sum_probs=163.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCC-----------CcCCHHHHHHHHHHHHHHHhHHhhC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHF-----------EPLLLKHRLKIAMDIVHALAYLHFG   69 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~-----------~~~~~~~~~~~~~~i~~~l~~LH~~   69 (239)
                      +++||||+++++++......+++|||+++++|.+++........           ..++...+..++.|++.||.|||  
T Consensus        64 ~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH--  141 (283)
T cd05048          64 DLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS--  141 (283)
T ss_pred             hcCCcccceEEEEEcCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            47899999999999988899999999999999999976432111           35778889999999999999999  


Q ss_pred             CCCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHh
Q 044155           70 FPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        70 ~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~  148 (239)
                       +.+++|+||||+||++++++.++|+|||++........ .......+++.|+|||.+.+..++.++|+||||+++|||+
T Consensus       142 -~~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~  220 (283)
T cd05048         142 -SHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIF  220 (283)
T ss_pred             -hCCeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHH
Confidence             89999999999999999999999999999865432211 1223344678899999998888999999999999999999


Q ss_pred             c-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          149 T-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       149 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      + |..||.....                     .+....+..... ...+...+.++.+++.+||+.||.+|||+.++++
T Consensus       221 ~~g~~p~~~~~~---------------------~~~~~~i~~~~~-~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~  278 (283)
T cd05048         221 SYGLQPYYGFSN---------------------QEVIEMIRSRQL-LPCPEDCPARVYALMIECWNEIPARRPRFKDIHT  278 (283)
T ss_pred             cCCCCCCCCCCH---------------------HHHHHHHHcCCc-CCCcccCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            8 8888753221                     111111111111 1122356788999999999999999999999999


Q ss_pred             HHHH
Q 044155          228 KLRQ  231 (239)
Q Consensus       228 ~L~~  231 (239)
                      .|+.
T Consensus       279 ~l~~  282 (283)
T cd05048         279 RLRS  282 (283)
T ss_pred             HHhc
Confidence            9975

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=6.8e-39  Score=260.36  Aligned_cols=217  Identities=21%  Similarity=0.273  Sum_probs=160.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC-Ceeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR-PIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~-~i~H~dl   79 (239)
                      +++||||+++++++...+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +. +++|+||
T Consensus        59 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~i~~~l~~lH---~~~~ivH~dl  130 (331)
T cd06649          59 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEA-----KRIPEEILGKVSIAVLRGLAYLR---EKHQIMHRDV  130 (331)
T ss_pred             HCCCCCCCeEEEEEEECCEEEEEeecCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHh---hcCCEEcCCC
Confidence            478999999999999999999999999999999999765     56889999999999999999999   64 6999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||+||+++.++.++|+|||++......   ......|++.|+|||++.+..++.++||||||+++|+|++|+.||.....
T Consensus       131 kp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~  207 (331)
T cd06649         131 KPSNILVNSRGEIKLCDFGVSGQLIDS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDA  207 (331)
T ss_pred             ChhhEEEcCCCcEEEccCccccccccc---ccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999999999999999998654322   12345688999999999988899999999999999999999999864221


Q ss_pred             cccc---cccc-----------h---h-----hhhh---hhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCC
Q 044155          160 VHDL---VCPF-----------S---E-----YLKN---CFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKD  214 (239)
Q Consensus       160 ~~~~---~~~~-----------~---~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  214 (239)
                      ..-.   ..+.           .   .     ....   ........+..................+.++.+||.+||+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  287 (331)
T cd06649         208 KELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIK  287 (331)
T ss_pred             HHHHHHhcccccccccCCccccCcccccccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccC
Confidence            1000   0000           0   0     0000   00000011111111111111111123567799999999999


Q ss_pred             CCCCCCCHHHHHHH
Q 044155          215 SPADRPSMVDVAKK  228 (239)
Q Consensus       215 dp~~Rps~~ell~~  228 (239)
                      ||++|||++++++.
T Consensus       288 ~P~~Rpt~~ell~h  301 (331)
T cd06649         288 NPAERADLKMLMNH  301 (331)
T ss_pred             CcccCCCHHHHhcC
Confidence            99999999999873

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=3.1e-39  Score=261.49  Aligned_cols=195  Identities=18%  Similarity=0.262  Sum_probs=158.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..++..++||||+++++|.+.+...     ..+++..+..++.|++.||+|||   +.+|+|||||
T Consensus        51 ~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~L~~lH---~~~ivHrDlk  122 (323)
T cd05571          51 NTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE-----RVFSEDRARFYGAEIVSALGYLH---SCDVVYRDLK  122 (323)
T ss_pred             hCCCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCC
Confidence            468999999999999999999999999999999998765     56889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.+||+|||+++...... .......|++.|+|||++.+..++.++|||||||++|+|++|..||..... 
T Consensus       123 p~NIll~~~~~~kl~DfG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~-  200 (323)
T cd05571         123 LENLMLDKDGHIKITDFGLCKEGISDG-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-  200 (323)
T ss_pred             HHHEEECCCCCEEEeeCCCCcccccCC-CcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCH-
Confidence            999999999999999999986532211 123345689999999999988899999999999999999999999853210 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                          .............  .+...+..+.+++.+||+.||++||     ++.++++
T Consensus       201 --------------------~~~~~~~~~~~~~--~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         201 --------------------EKLFELILMEEIR--FPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             --------------------HHHHHHHHcCCCC--CCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence                                1111111111111  1123456788999999999999999     7888875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=1.5e-39  Score=255.62  Aligned_cols=201  Identities=31%  Similarity=0.479  Sum_probs=152.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||++++|++...+..++|+||+++|+|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||+
T Consensus        57 ~l~h~ni~~~~g~~~~~~~~~lv~e~~~~g~L~~~L~~~~~---~~~~~~~~~~i~~~i~~~l~~Lh---~~~iiH~~l~  130 (259)
T PF07714_consen   57 KLRHPNIVKLYGFCIENEPLFLVMEYCPGGSLDDYLKSKNK---EPLSEQQRLSIAIQIAEALSYLH---SNNIIHGNLS  130 (259)
T ss_dssp             THSBTTBE-EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT---TTSBHHHHHHHHHHHHHHHHHHH---HTTEEEST-S
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc---cccccccccc
Confidence            46899999999999988889999999999999999998633   57889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCC-CcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEG-ETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      ++||+++.++.+||+|||++...... ..........+..|+|||.+....++.++||||||+++||+++ |..|+....
T Consensus       131 ~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~  210 (259)
T PF07714_consen  131 PSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYD  210 (259)
T ss_dssp             GGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999998765222 1122334456788999999998889999999999999999999 566654321


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                                           ..+......... ....+...+..+.++|.+||+.||.+|||+.++++.|
T Consensus       211 ---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  211 ---------------------NEEIIEKLKQGQ-RLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             ---------------------HHHHHHHHHTTE-ETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             ---------------------cccccccccccc-cceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence                                 111111111111 1111124466788999999999999999999999886

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=6.8e-39  Score=271.73  Aligned_cols=201  Identities=21%  Similarity=0.245  Sum_probs=160.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..++..++||||+++|+|.+.+...... ...++...+..++.|++.||.|||   +++|+|||||
T Consensus       121 ~l~Hpniv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~-~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlk  196 (478)
T PTZ00267        121 ACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKE-HLPFQEYEVGLLFYQIVLALDEVH---SRKMMHRDLK  196 (478)
T ss_pred             hCCCCCEeEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCcC
Confidence            478999999999999999999999999999999888643211 146788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||++........ .......||+.|+|||++.+..++.++||||||+++|+|++|..||.... 
T Consensus       197 p~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~-  275 (478)
T PTZ00267        197 SANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPS-  275 (478)
T ss_pred             HHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC-
Confidence            9999999999999999999876543221 12334568999999999998889999999999999999999999875321 


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          ..+.......+.... .+...+..+.++|.+||..||++|||+++++.
T Consensus       276 --------------------~~~~~~~~~~~~~~~-~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        276 --------------------QREIMQQVLYGKYDP-FPCPVSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             --------------------HHHHHHHHHhCCCCC-CCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence                                111122222222111 11234567899999999999999999999875

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=3e-39  Score=265.47  Aligned_cols=205  Identities=25%  Similarity=0.363  Sum_probs=175.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++.|||||+++|+|.+. ..|||||+++-|-|..+++.+.    ..++......++.||+.||+|||   +.+.|||||.
T Consensus       447 nfdHphIikLIGv~~e~-P~WivmEL~~~GELr~yLq~nk----~sL~l~tL~ly~~Qi~talaYLe---SkrfVHRDIA  518 (974)
T KOG4257|consen  447 NFDHPHIIKLIGVCVEQ-PMWIVMELAPLGELREYLQQNK----DSLPLRTLTLYCYQICTALAYLE---SKRFVHRDIA  518 (974)
T ss_pred             hCCCcchhheeeeeecc-ceeEEEecccchhHHHHHHhcc----ccchHHHHHHHHHHHHHHHHHHH---hhchhhhhhh
Confidence            47899999999999655 4799999999999999998764    57889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      .+|||+.+...+|++|||+++.......+..+...-++.|||||.++...++.++|+|.||+.+||++. |..||++..+
T Consensus       519 aRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkN  598 (974)
T KOG4257|consen  519 ARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKN  598 (974)
T ss_pred             hhheeecCcceeeecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccc
Confidence            999999999999999999999887776666666667889999999999999999999999999999876 7788876553


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      .+-..                     . +.+..+.+.++++++.+..++.+||.+||.+||++.++...|.+++..
T Consensus       599 sDVI~---------------------~-iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~qe  652 (974)
T KOG4257|consen  599 SDVIG---------------------H-IENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQE  652 (974)
T ss_pred             cceEE---------------------E-ecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHHH
Confidence            22221                     1 122223445568889999999999999999999999999999988763

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=2.5e-39  Score=257.84  Aligned_cols=219  Identities=19%  Similarity=0.190  Sum_probs=157.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++||||++++++..+....     ..++...++.++.|++.||.|||   +.+++|+|||
T Consensus        56 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlk  127 (287)
T cd07848          56 TLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLEEMP-----NGVPPEKVRSYIYQLIKAIHWCH---KNDIVHRDIK  127 (287)
T ss_pred             hCCCccccchhhhEecCCEEEEEEecCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            478999999999999999999999999976665444322     46888999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++...............+++.|+|||++.+..++.++|+||||+++|+|++|+.||......
T Consensus       128 p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~  207 (287)
T cd07848         128 PENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEI  207 (287)
T ss_pred             HHHEEEcCCCcEEEeeccCcccccccccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHH
Confidence            99999999999999999998765433222233456889999999998888999999999999999999999999754322


Q ss_pred             cccc------ccchhhhhhhhhccc-hhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLV------CPFSEYLKNCFEDNR-FTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....      .+........+.... .............  ........+..+.+++.+||+.||++|||++++++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         208 DQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             HHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            1110      000000000000000 0000000000000  00011234677999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.5e-38  Score=263.16  Aligned_cols=218  Identities=17%  Similarity=0.194  Sum_probs=158.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+||||+++++++..+...++|+|++. ++|.+++...     ..++...++.++.|++.||.|||   +++|+|||||
T Consensus       139 ~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~-----~~l~~~~~~~i~~qi~~aL~ylH---~~~IvHrDiK  209 (391)
T PHA03212        139 AINHPSIIQLKGTFTYNKFTCLILPRYK-TDLYCYLAAK-----RNIAICDILAIERSVLRAIQYLH---ENRIIHRDIK  209 (391)
T ss_pred             hCCCCCCCCEeEEEEECCeeEEEEecCC-CCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence            4799999999999999999999999996 7998888765     46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++...............||+.|+|||++.+..++.++||||||+++|+|++|..|+......
T Consensus       210 P~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~  289 (391)
T PHA03212        210 AENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGL  289 (391)
T ss_pred             hHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccc
Confidence            99999999999999999998653222222223456899999999999888999999999999999999999876432211


Q ss_pred             ccccc---cchhhhhhh--------hhc-cchhhhhhhhhhc----CC-C--cHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 044155          161 HDLVC---PFSEYLKNC--------FED-NRFTEIVDHIVVE----DV-S--SIEKEQQLHASAQVTFECIKDSPADRPS  221 (239)
Q Consensus       161 ~~~~~---~~~~~~~~~--------~~~-~~~~~~~~~~~~~----~~-~--~~~~~~~~~~~~~li~~cl~~dp~~Rps  221 (239)
                      .....   .........        ... .............    .. .  .......+.++.+++.+||+.||.+|||
T Consensus       290 ~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpt  369 (391)
T PHA03212        290 DGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPS  369 (391)
T ss_pred             cccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCC
Confidence            11000   000000000        000 0000000000000    00 0  0111245678899999999999999999


Q ss_pred             HHHHHH
Q 044155          222 MVDVAK  227 (239)
Q Consensus       222 ~~ell~  227 (239)
                      ++|+++
T Consensus       370 a~elL~  375 (391)
T PHA03212        370 AEALLD  375 (391)
T ss_pred             HHHHhc
Confidence            999986

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=1.2e-38  Score=250.61  Aligned_cols=204  Identities=20%  Similarity=0.346  Sum_probs=161.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++.+...+..+++|||+++++|.+++.....   ..++...+..++.|++.||+|||   +.+++|+|||
T Consensus        57 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~  130 (261)
T cd05072          57 TLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEG---GKVLLPKLIDFSAQIAEGMAYIE---RKNYIHRDLR  130 (261)
T ss_pred             hCCCCCeeeEEEEEcCCCCcEEEEecCCCCcHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccc
Confidence            47899999999999998999999999999999999976533   46788889999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+...............++..|+|||.+....++.++|+||||+++|+|++ |..||.....
T Consensus       131 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~  210 (261)
T cd05072         131 AANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSN  210 (261)
T ss_pred             hhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCH
Confidence            999999999999999999987654332222223345678999999988889999999999999999998 8888753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      .                     +........ .........+..+.+++.+||+.+|++|||++++.+.|+++
T Consensus       211 ~---------------------~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         211 S---------------------DVMSALQRG-YRMPRMENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             H---------------------HHHHHHHcC-CCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence            0                     000000000 00001113456788999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=9.6e-39  Score=263.42  Aligned_cols=206  Identities=18%  Similarity=0.342  Sum_probs=158.4

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCC---------------------------------------
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPH---------------------------------------   43 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~---------------------------------------   43 (239)
                      +||||+++++++.++...++||||+++|+|.+++.......                                       
T Consensus        97 ~HpnIv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  176 (375)
T cd05104          97 NHINIVNLLGACTVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVS  176 (375)
T ss_pred             CCcceeeeeeeeccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcc
Confidence            79999999999999999999999999999999987532100                                       


Q ss_pred             -------------------------------CCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCce
Q 044155           44 -------------------------------FEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVA   92 (239)
Q Consensus        44 -------------------------------~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~   92 (239)
                                                     ...+++..+..++.|++.||+|||   +.+++|+||||+||+++.++.+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nill~~~~~~  253 (375)
T cd05104         177 YVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLA---SKNCIHRDLAARNILLTHGRIT  253 (375)
T ss_pred             cccccccccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCchhhEEEECCCcE
Confidence                                           024678888999999999999999   8999999999999999999999


Q ss_pred             eEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccccccccccchhh
Q 044155           93 KLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKDVHDLVCPFSEY  170 (239)
Q Consensus        93 ~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~~~~~~~~~~~~  170 (239)
                      +|+|||++........ .......++..|+|||++.+..++.++||||||+++|+|++ |..||........        
T Consensus       254 kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~--------  325 (375)
T cd05104         254 KICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSK--------  325 (375)
T ss_pred             EEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHH--------
Confidence            9999999876533221 11122335667999999998899999999999999999998 7777754321100        


Q ss_pred             hhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          171 LKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                               ....+    ........+...+.++.+++.+||..||++|||+.|+++.|++.
T Consensus       326 ---------~~~~~----~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         326 ---------FYKMI----KEGYRMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             ---------HHHHH----HhCccCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence                     00000    10000001112346789999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-39  Score=258.73  Aligned_cols=195  Identities=20%  Similarity=0.268  Sum_probs=156.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++...     ..+++..+..++.|++.||.|||   +++++|||||
T Consensus        49 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~HrDlk  120 (312)
T cd05585          49 QVNCPFIVPLKFSFQSPEKLYLVLAFINGGELFHHLQRE-----GRFDLSRARFYTAELLCALENLH---KFNVIYRDLK  120 (312)
T ss_pred             hCCCCcEeceeeEEecCCeEEEEEcCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCC
Confidence            478999999999999999999999999999999999765     56889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||....  
T Consensus       121 p~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~--  197 (312)
T cd05585         121 PENILLDYQGHIALCDFGLCKLNMKDD-DKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDEN--  197 (312)
T ss_pred             HHHeEECCCCcEEEEECcccccCccCC-CccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCC--
Confidence            999999999999999999986532221 12334568999999999998889999999999999999999999985321  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC---HHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS---MVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps---~~ell~  227 (239)
                                         ..+...........  .+...+..+.+++.+||+.||.+||+   +.+++.
T Consensus       198 -------------------~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~  246 (312)
T cd05585         198 -------------------VNEMYRKILQEPLR--FPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKN  246 (312)
T ss_pred             -------------------HHHHHHHHHcCCCC--CCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHc
Confidence                               11111111111111  11245567889999999999999985   555553

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=2e-38  Score=252.53  Aligned_cols=200  Identities=21%  Similarity=0.311  Sum_probs=158.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++.+.+..++||||+++|+|.+.+.....   ..+++..+..++.|++.||.|||   +.+++|||||
T Consensus        56 ~l~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dik  129 (285)
T cd05631          56 KVNSRFVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGN---PGFDEQRAIFYAAELCCGLEDLQ---RERIVYRDLK  129 (285)
T ss_pred             hcCCCcEEEEEEEEccCCeEEEEEEecCCCcHHHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCC
Confidence            46899999999999999999999999999999888765422   45889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++.......  ......|+..|+|||++.+..++.++||||||+++|+|++|+.||......
T Consensus       130 p~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~  207 (285)
T cd05631         130 PENILLDDRGHIRISDLGLAVQIPEGE--TVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKER  207 (285)
T ss_pred             HHHEEECCCCCEEEeeCCCcEEcCCCC--eecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcc
Confidence            999999999999999999987653322  123446899999999999889999999999999999999999998643211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-----MVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~ell~  227 (239)
                      ..                  .+.+........ .......+..+.+++.+||+.||.+|||     ++++++
T Consensus       208 ~~------------------~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~  260 (285)
T cd05631         208 VK------------------REEVDRRVKEDQ-EEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQ  260 (285)
T ss_pred             hh------------------HHHHHHHhhccc-ccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhc
Confidence            00                  001111111100 0111235567899999999999999997     788876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=9.7e-39  Score=263.22  Aligned_cols=207  Identities=19%  Similarity=0.355  Sum_probs=159.6

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC-----------------------------------------
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-----------------------------------------   41 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~-----------------------------------------   41 (239)
                      +|+||+++++++...+..++||||+++|+|.+++.....                                         
T Consensus       100 ~h~nIv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (374)
T cd05106         100 QHKNIVNLLGACTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSD  179 (374)
T ss_pred             cCCceeeEeeEecCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccc
Confidence            799999999999999999999999999999998864311                                         


Q ss_pred             ------------------------CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEccc
Q 044155           42 ------------------------PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDF   97 (239)
Q Consensus        42 ------------------------~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~df   97 (239)
                                              ....++++..+..++.|++.||.|||   +++++||||||+||+++.++.++|+||
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~giiHrDLkp~Nil~~~~~~~kL~Df  256 (374)
T cd05106         180 TYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLA---SKNCIHRDVAARNVLLTDGRVAKICDF  256 (374)
T ss_pred             cccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCEEeccCchheEEEeCCCeEEEeec
Confidence                                    00124678888999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccccccccccchhhhhhhh
Q 044155           98 SLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKDVHDLVCPFSEYLKNCF  175 (239)
Q Consensus        98 g~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~  175 (239)
                      |++......... ......++..|+|||++....++.++||||||+++|+|++ |..||........             
T Consensus       257 Gla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~-------------  323 (374)
T cd05106         257 GLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSK-------------  323 (374)
T ss_pred             eeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHH-------------
Confidence            998655332211 1122334567999999988889999999999999999997 9888754321100             


Q ss_pred             hccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          176 EDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                          .....    ........+...+.++.+++.+||..||.+|||+.++++.|+++.
T Consensus       324 ----~~~~~----~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~  373 (374)
T cd05106         324 ----FYKMV----KRGYQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL  373 (374)
T ss_pred             ----HHHHH----HcccCccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence                00000    000000111123567899999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=6e-38  Score=250.50  Aligned_cols=210  Identities=23%  Similarity=0.356  Sum_probs=164.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFG   69 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~   69 (239)
                      +++||||+++++++......++||||+++++|.+++......           ....+++..+..++.|++.||+|||  
T Consensus        63 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH--  140 (291)
T cd05094          63 NLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA--  140 (291)
T ss_pred             cCCCCCcceEEEEEccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            478999999999999999999999999999999999764320           1134788999999999999999999  


Q ss_pred             CCCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHh
Q 044155           70 FPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        70 ~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~  148 (239)
                       +++++|+||||+||+++.++.++|+|||++........ .......++..|+|||++.+..++.++||||||+++|+|+
T Consensus       141 -~~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~  219 (291)
T cd05094         141 -SQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIF  219 (291)
T ss_pred             -hCCeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHH
Confidence             99999999999999999999999999999865432211 1122344578899999999888999999999999999999


Q ss_pred             c-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          149 T-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       149 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      + |..||......                     +........... ......+..+.+++.+||..||++|||+.++++
T Consensus       220 t~g~~p~~~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~  277 (291)
T cd05094         220 TYGKQPWFQLSNT---------------------EVIECITQGRVL-ERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYK  277 (291)
T ss_pred             hCCCCCCCCCCHH---------------------HHHHHHhCCCCC-CCCccCCHHHHHHHHHHcccChhhCcCHHHHHH
Confidence            8 88887543210                     000001111100 001134567899999999999999999999999


Q ss_pred             HHHHHHHh
Q 044155          228 KLRQIYRS  235 (239)
Q Consensus       228 ~L~~l~~~  235 (239)
                      .|.++.+.
T Consensus       278 ~l~~~~~~  285 (291)
T cd05094         278 ILHALGKA  285 (291)
T ss_pred             HHHHHHhh
Confidence            99998764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=5e-38  Score=250.60  Aligned_cols=210  Identities=23%  Similarity=0.361  Sum_probs=164.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC--------CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ--------PHFEPLLLKHRLKIAMDIVHALAYLHFGFPR   72 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~--------~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~   72 (239)
                      +++||||+++++++...+..++||||+++++|.+++.....        .....+++..+..++.|++.||+|||   +.
T Consensus        63 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH---~~  139 (288)
T cd05093          63 NLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLA---SQ  139 (288)
T ss_pred             hCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            47899999999999999999999999999999999975431        11135899999999999999999999   99


Q ss_pred             CeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-C
Q 044155           73 PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-G  150 (239)
Q Consensus        73 ~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g  150 (239)
                      +++|+||||+||+++.++.++|+|||++........ .......++..|+|||++.+..++.++|+||||+++|+|++ |
T Consensus       140 ~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g  219 (288)
T cd05093         140 HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYG  219 (288)
T ss_pred             CeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999865432211 11223345678999999998889999999999999999998 8


Q ss_pred             CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      ..||......                     +............ .....+.++.+++.+||+.||.+|||+.+++..|+
T Consensus       220 ~~p~~~~~~~---------------------~~~~~i~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~  277 (288)
T cd05093         220 KQPWYQLSNN---------------------EVIECITQGRVLQ-RPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQ  277 (288)
T ss_pred             CCCCCCCCHH---------------------HHHHHHHcCCcCC-CCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHH
Confidence            7777533210                     0111111111000 01133467899999999999999999999999999


Q ss_pred             HHHHh
Q 044155          231 QIYRS  235 (239)
Q Consensus       231 ~l~~~  235 (239)
                      ++...
T Consensus       278 ~~~~~  282 (288)
T cd05093         278 NLAKA  282 (288)
T ss_pred             HHHHh
Confidence            98764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1e-38  Score=254.57  Aligned_cols=218  Identities=17%  Similarity=0.191  Sum_probs=155.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||++ ++|.+++....    ..++...+..++.|++.||+|||   +++++|||||
T Consensus        59 ~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlk  130 (288)
T cd07871          59 NLKHANIVTLHDIIHTERCLTLVFEYLD-SDLKQYLDNCG----NLMSMHNVKIFMFQLLRGLSYCH---KRKILHRDLK  130 (288)
T ss_pred             hCCCCCEeeEEEEEcCCCeEEEEEeCCC-cCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence            4789999999999999888999999997 69999887542    45788899999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||++....... .......+++.|+|||.+.+ ..++.++||||+|+++|+|++|..||.....
T Consensus       131 p~Nil~~~~~~~kl~DfG~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~  209 (288)
T cd07871         131 PQNLLINEKGELKLADFGLARAKSVPT-KTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTV  209 (288)
T ss_pred             HHHEEECCCCCEEECcCcceeeccCCC-ccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999999999999999986543221 11233457889999998875 5688999999999999999999999864332


Q ss_pred             cccccc-------cchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......       +..+.+........+....................+.+..+++.+||..||.+|||++|+++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         210 KEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             HHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            111100       00000000000000000000000000000000123466889999999999999999999975

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.9e-39  Score=255.92  Aligned_cols=192  Identities=23%  Similarity=0.323  Sum_probs=156.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..++......++.|++.||+|||   +++++|+|||
T Consensus        57 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk  128 (291)
T cd05612          57 EVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNS-----GRFSNSTGLFYASEIVCALEYLH---SKEIVYRDLK  128 (291)
T ss_pred             hCCCCcHhhhHhhhccCCeEEEEEeCCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence            478999999999999999999999999999999999765     56888999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++......    .....|++.|+|||++.+..++.++||||||+++|+|++|..||..... 
T Consensus       129 p~NIli~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~-  203 (291)
T cd05612         129 PENILLDKEGHIKLTDFGFAKKLRDR----TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP-  203 (291)
T ss_pred             HHHeEECCCCCEEEEecCcchhccCC----cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-
Confidence            99999999999999999998765332    1234688999999999988899999999999999999999998853221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-----MVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~ell~  227 (239)
                                          ......+......  .+...+..+.+++.+||+.||.+||+     ++++++
T Consensus       204 --------------------~~~~~~i~~~~~~--~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  253 (291)
T cd05612         204 --------------------FGIYEKILAGKLE--FPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKN  253 (291)
T ss_pred             --------------------HHHHHHHHhCCcC--CCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhc
Confidence                                1111111111111  11123567889999999999999995     888775

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=3.7e-38  Score=247.26  Aligned_cols=200  Identities=19%  Similarity=0.350  Sum_probs=157.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......+++|||+.+++|.+++....    ..+++..+..++.|++.||+|||   +.+++|+|||
T Consensus        55 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~  127 (256)
T cd05113          55 KLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHG----KRFQPSQLLEMCKDVCEGMAYLE---SKQFIHRDLA  127 (256)
T ss_pred             cCCCCCeeeEEEEEccCCCcEEEEEcCCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccC
Confidence            4789999999999998888999999999999999997643    35789999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||.++..............++..|+|||...+..++.++|+||||+++|+|++ |..||.....
T Consensus       128 p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~  207 (256)
T cd05113         128 ARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNN  207 (256)
T ss_pred             cceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCH
Confidence            999999999999999999887553332211122335677999999988889999999999999999998 8888753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      .                     +.......... .......+..+.+++.+||+.+|.+|||+.++++.|
T Consensus       208 ~---------------------~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~  255 (256)
T cd05113         208 S---------------------ETVEKVSQGLR-LYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSSI  255 (256)
T ss_pred             H---------------------HHHHHHhcCCC-CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHhh
Confidence            0                     01111111100 000112356789999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=1.2e-38  Score=258.59  Aligned_cols=192  Identities=19%  Similarity=0.309  Sum_probs=155.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+++..++||||+.+++|.+.+...     ..++...+..++.|++.||+|||   +++++|+|||
T Consensus        74 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlk  145 (329)
T PTZ00263         74 ELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKA-----GRFPNDVAKFYHAELVLAFEYLH---SKDIIYRDLK  145 (329)
T ss_pred             hCCCCCCCcEEEEEEcCCEEEEEEcCCCCChHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence            478999999999999999999999999999999999765     56788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.+||+|||++.......    ....|++.|+|||++.+..++.++||||||+++|+|++|..||..... 
T Consensus       146 p~NIll~~~~~~kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~-  220 (329)
T PTZ00263        146 PENLLLDNKGHVKVTDFGFAKKVPDRT----FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTP-  220 (329)
T ss_pred             HHHEEECCCCCEEEeeccCceEcCCCc----ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCH-
Confidence            999999999999999999987653322    234689999999999988899999999999999999999999853221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-----MVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~ell~  227 (239)
                                          .+....+......  .+...+..+.+++.+||+.||.+||+     +++++.
T Consensus       221 --------------------~~~~~~i~~~~~~--~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  270 (329)
T PTZ00263        221 --------------------FRIYEKILAGRLK--FPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKN  270 (329)
T ss_pred             --------------------HHHHHHHhcCCcC--CCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence                                0111111111110  01123456889999999999999997     577663

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=3.5e-38  Score=256.31  Aligned_cols=216  Identities=20%  Similarity=0.262  Sum_probs=158.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~i~H~dl   79 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++...     ..++......++.|++.||.|||   + .+++|+||
T Consensus        59 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~l~~~l~~lH---~~~~ivH~dl  130 (333)
T cd06650          59 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-----GRIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDV  130 (333)
T ss_pred             HCCCCcccceeEEEEECCEEEEEEecCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---hcCCEEecCC
Confidence            478999999999999999999999999999999999765     55788999999999999999999   6 47999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||+||+++.++.++|+|||++......   ......++..|+|||.+.+..++.++|+||||+++|++++|..||.....
T Consensus       131 kp~Nili~~~~~~kL~Dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~  207 (333)
T cd06650         131 KPSNILVNSRGEIKLCDFGVSGQLIDS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDA  207 (333)
T ss_pred             ChhhEEEcCCCCEEEeeCCcchhhhhh---ccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcch
Confidence            999999999999999999998654222   12344688999999999988899999999999999999999999864321


Q ss_pred             cccc--c------cc-----------chhhhhhhh-h---ccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCC
Q 044155          160 VHDL--V------CP-----------FSEYLKNCF-E---DNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSP  216 (239)
Q Consensus       160 ~~~~--~------~~-----------~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp  216 (239)
                      ....  .      .+           ......... .   ........................+.++.+++.+||+.||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P  287 (333)
T cd06650         208 KELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNP  287 (333)
T ss_pred             hHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCc
Confidence            1000  0      00           000000000 0   0000011111111111111111245678999999999999


Q ss_pred             CCCCCHHHHHH
Q 044155          217 ADRPSMVDVAK  227 (239)
Q Consensus       217 ~~Rps~~ell~  227 (239)
                      ++|||+.|++.
T Consensus       288 ~~Rpt~~ell~  298 (333)
T cd06650         288 AERADLKQLMV  298 (333)
T ss_pred             ccCcCHHHHhh
Confidence            99999999975

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.9e-38  Score=247.16  Aligned_cols=204  Identities=23%  Similarity=0.396  Sum_probs=160.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..+++||++++++|.+++....+   ..+++..+..++.|++.|+.+||   +.+++|+|||
T Consensus        57 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~  130 (261)
T cd05068          57 KLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAG---RALKLPQLIDMAAQVASGMAYLE---AQNYIHRDLA  130 (261)
T ss_pred             HCCCCCccceeEEEecCCCeeeeeecccCCcHHHHHhccCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCC
Confidence            47899999999999999999999999999999999976532   46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++................+..|+|||...+..++.++|+||||++++++++ |..||.....
T Consensus       131 p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~  210 (261)
T cd05068         131 ARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTN  210 (261)
T ss_pred             cceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            999999999999999999987654322111112223457999999988889999999999999999999 8778753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                                           ........ ...........+..+.+++.+||+.+|.+||++.++.+.|+++
T Consensus       211 ---------------------~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~~  261 (261)
T cd05068         211 ---------------------AEVLQQVD-QGYRMPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLEDF  261 (261)
T ss_pred             ---------------------HHHHHHHH-cCCCCCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhcC
Confidence                                 00110110 0000011123456789999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=7e-39  Score=239.01  Aligned_cols=216  Identities=19%  Similarity=0.180  Sum_probs=169.4

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++|+||+.++++|-+.....+|+||++ .+|+..++...    ..+....++.++.++++|++|+|   .+.|+|||+||
T Consensus        58 l~h~nIi~LiD~F~~~~~l~lVfEfm~-tdLe~vIkd~~----i~l~pa~iK~y~~m~LkGl~y~H---~~~IlHRDlKP  129 (318)
T KOG0659|consen   58 LKHPNIIELIDVFPHKSNLSLVFEFMP-TDLEVVIKDKN----IILSPADIKSYMLMTLKGLAYCH---SKWILHRDLKP  129 (318)
T ss_pred             ccCcchhhhhhhccCCCceEEEEEecc-ccHHHHhcccc----cccCHHHHHHHHHHHHHHHHHHH---hhhhhcccCCc
Confidence            689999999999999999999999998 89999998764    56788999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      .|+|++.+|.+||+|||+++.+..... .......|.+|+|||.+.+.+ |+...||||.||++.|++-|.+.|.+..+.
T Consensus       130 nNLLis~~g~lKiADFGLAr~f~~p~~-~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDi  208 (318)
T KOG0659|consen  130 NNLLISSDGQLKIADFGLARFFGSPNR-IQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDI  208 (318)
T ss_pred             cceEEcCCCcEEeecccchhccCCCCc-ccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchH
Confidence            999999999999999999988754322 222336789999999998865 899999999999999999999999888877


Q ss_pred             ccccccchhhhhhhhhccchhhhhh-----hh--hhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVD-----HI--VVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      +.....|+.......  ..|++...     ..  .............+....+++..|+.+||.+|+|+.|+++.
T Consensus       209 dQL~~If~~LGTP~~--~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  209 DQLSKIFRALGTPTP--DQWPEMTSLPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             HHHHHHHHHcCCCCc--ccCccccccccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence            666555443322111  11222111     00  01111111122455667999999999999999999998863

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=2.8e-38  Score=253.92  Aligned_cols=212  Identities=21%  Similarity=0.312  Sum_probs=157.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC--------------CCCcCCHHHHHHHHHHHHHHHhHH
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP--------------HFEPLLLKHRLKIAMDIVHALAYL   66 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~i~~~l~~L   66 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++......              ....+++.....++.|++.||.||
T Consensus        75 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~l  154 (304)
T cd05096          75 RLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYL  154 (304)
T ss_pred             hcCCCCeeEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999988653210              112467788899999999999999


Q ss_pred             hhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHH
Q 044155           67 HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLF  145 (239)
Q Consensus        67 H~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  145 (239)
                      |   +.+++|+||||+||+++.++.+||+|||++........ .......++..|+|||++....++.++||||||+++|
T Consensus       155 H---~~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~  231 (304)
T cd05096         155 S---SLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLW  231 (304)
T ss_pred             H---HCCccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHH
Confidence            9   89999999999999999999999999999875533221 1122334578899999998888999999999999999


Q ss_pred             HHhcC--CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          146 ELLTG--WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       146 ~~~~g--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      +|+++  ..||.........        ..      .......... ......+...+..+.+++.+||..||.+|||+.
T Consensus       232 el~~~~~~~p~~~~~~~~~~--------~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~  296 (304)
T cd05096         232 EILMLCKEQPYGELTDEQVI--------EN------AGEFFRDQGR-QVYLFRPPPCPQGLYELMLQCWSRDCRERPSFS  296 (304)
T ss_pred             HHHHccCCCCCCcCCHHHHH--------HH------HHHHhhhccc-cccccCCCCCCHHHHHHHHHHccCCchhCcCHH
Confidence            99874  4566543211000        00      0000000000 000000113456789999999999999999999


Q ss_pred             HHHHHHH
Q 044155          224 DVAKKLR  230 (239)
Q Consensus       224 ell~~L~  230 (239)
                      ++.+.|+
T Consensus       297 ~i~~~l~  303 (304)
T cd05096         297 DIHAFLT  303 (304)
T ss_pred             HHHHHHh
Confidence            9988875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=4.7e-38  Score=246.59  Aligned_cols=200  Identities=20%  Similarity=0.361  Sum_probs=157.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++||||+++++|.+++....    ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        55 ~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~  127 (256)
T cd05114          55 KLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQ----GKLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLA  127 (256)
T ss_pred             HCCCCCceeEEEEEccCCCEEEEEEcCCCCcHHHHHHhCc----cCCCHHHHHHHHHHHHHHHHHHH---HCCccccccC
Confidence            4789999999999999999999999999999999987542    35788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+...............++..|+|||.+.+..++.++|+||||+++|++++ |..||.....
T Consensus       128 p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~  207 (256)
T cd05114         128 ARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSN  207 (256)
T ss_pred             cceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCH
Confidence            999999999999999999887553322222222335668999999988889999999999999999999 8778753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                                           .+.......... ...+...+..+.+++.+||..+|.+|||++++++.|
T Consensus       208 ---------------------~~~~~~i~~~~~-~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         208 ---------------------YEVVEMISRGFR-LYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             ---------------------HHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence                                 111111111100 000112345689999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=8.4e-38  Score=248.24  Aligned_cols=204  Identities=18%  Similarity=0.328  Sum_probs=158.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++.||||+++++++. +...++++||+++|+|.+++....    ..+++..+..++.|++.||.|||   +++++|+|||
T Consensus        65 ~l~h~~iv~~~~~~~-~~~~~~i~e~~~~gsL~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlk  136 (279)
T cd05111          65 SLDHAYIVRLLGICP-GASLQLVTQLSPLGSLLDHVRQHR----DSLDPQRLLNWCVQIAKGMYYLE---EHRMVHRNLA  136 (279)
T ss_pred             cCCCCCcceEEEEEC-CCccEEEEEeCCCCcHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHH---HCCEeccccC
Confidence            468999999999875 445678999999999999997643    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.+||+|||.++........ ......++..|+|||.+.+..++.++|+||||+++||+++ |..||....
T Consensus       137 p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~  216 (279)
T cd05111         137 ARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMR  216 (279)
T ss_pred             cceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999998765332211 1223346678999999988889999999999999999998 888875432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      ..                  ...+.+.    .......+...+..+.+++.+||..||++|||+.|+++.|..+..
T Consensus       217 ~~------------------~~~~~~~----~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~  270 (279)
T cd05111         217 PH------------------EVPDLLE----KGERLAQPQICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMAR  270 (279)
T ss_pred             HH------------------HHHHHHH----CCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHh
Confidence            10                  0001111    000000011223457889999999999999999999999988654

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.6e-38  Score=258.76  Aligned_cols=192  Identities=19%  Similarity=0.257  Sum_probs=157.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+++..++||||+++|+|.+++...     ..+++..+..++.|++.||.|||   +.+++|||||
T Consensus        87 ~l~hp~Iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLk  158 (340)
T PTZ00426         87 YINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRN-----KRFPNDVGCFYAAQIVLIFEYLQ---SLNIVYRDLK  158 (340)
T ss_pred             hCCCCCCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCC
Confidence            478999999999999999999999999999999999765     56889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.++|+|||++......    .....||+.|+|||++.+..++.++|+|||||++|+|++|..||..... 
T Consensus       159 p~NILl~~~~~ikL~DFG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~-  233 (340)
T PTZ00426        159 PENLLLDKDGFIKMTDFGFAKVVDTR----TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEP-  233 (340)
T ss_pred             HHHEEECCCCCEEEecCCCCeecCCC----cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCH-
Confidence            99999999999999999998765322    2245689999999999988899999999999999999999999853221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                          ......+......  .+...+..+.+++.+||+.||.+|+     |++++++
T Consensus       234 --------------------~~~~~~i~~~~~~--~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~  283 (340)
T PTZ00426        234 --------------------LLIYQKILEGIIY--FPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKE  283 (340)
T ss_pred             --------------------HHHHHHHhcCCCC--CCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHc
Confidence                                0111111111110  0113345678999999999999995     8888875

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=2.1e-38  Score=256.60  Aligned_cols=195  Identities=19%  Similarity=0.273  Sum_probs=156.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++||||+++++|..++...     ..+++..+..++.|++.||.|||   +++++|+|||
T Consensus        51 ~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlk  122 (323)
T cd05595          51 NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE-----RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIK  122 (323)
T ss_pred             hCCCCCCcceeeEEecCCEEEEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCC
Confidence            478999999999999999999999999999999888765     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||..... 
T Consensus       123 p~NIll~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-  200 (323)
T cd05595         123 LENLMLDKDGHIKITDFGLCKEGISDG-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-  200 (323)
T ss_pred             HHHEEEcCCCCEEecccHHhccccCCC-CccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCH-
Confidence            999999999999999999876432211 112345689999999999988899999999999999999999999853221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                          .............  .+...++.+.+++.+||+.||.+||     ++.++++
T Consensus       201 --------------------~~~~~~~~~~~~~--~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         201 --------------------ERLFELILMEEIR--FPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             --------------------HHHHHHHhcCCCC--CCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence                                1111111111111  0123456788999999999999998     7888875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=3.9e-38  Score=251.34  Aligned_cols=215  Identities=19%  Similarity=0.257  Sum_probs=156.1

Q ss_pred             CCCcccceeeEEEEe-----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            2 MSHNHILKLIGCCLE-----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         2 l~H~niv~l~~~~~~-----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      ++||||+++++++..     ....++|||++. ++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|
T Consensus        61 ~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~lH---~~~iiH  133 (290)
T cd07862          61 FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPE---PGVPTETIKDMMFQLLRGLDFLH---SHRVVH  133 (290)
T ss_pred             cCCCCcceEEEEEecccCCCCCcEEEEEccCC-CCHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeee
Confidence            479999999999852     345789999997 799999876533   45889999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      +||||+||+++.++.++|+|||++......  .......+++.|+|||.+.+..++.++||||||+++|+|++|..||..
T Consensus       134 ~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~  211 (290)
T cd07862         134 RDLKPQNILVTSSGQIKLADFGLARIYSFQ--MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRG  211 (290)
T ss_pred             CCCCHHHEEEcCCCCEEEccccceEeccCC--cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCC
Confidence            999999999999999999999998765332  123345688999999999888899999999999999999999999875


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhh---hhhhc-CCCc--HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVD---HIVVE-DVSS--IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..+........ .....+ ....+.....   ..... ....  ......+..+.+++.+||+.||++|||+.|+++
T Consensus       212 ~~~~~~~~~i~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         212 SSDVDQLGKIL-DVIGLP-GEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             CCHHHHHHHHH-HHhCCC-ChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence            44322111000 000000 0000000000   00000 0000  011134567889999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=1.1e-37  Score=245.83  Aligned_cols=208  Identities=20%  Similarity=0.270  Sum_probs=163.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++++||+++++|.+++...... ...++...+..++.|++.||.|||   +.+++|+|||
T Consensus        58 ~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~  133 (267)
T cd08228          58 QLNHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQ-KRLIPERTVWKYFVQLCSAVEHMH---SRRVMHRDIK  133 (267)
T ss_pred             hCCCcceeeeeeeEEECCeEEEEEEecCCCcHHHHHHHhhhc-cCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCC
Confidence            478999999999999999999999999999999888643211 145788899999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+....... .......+++.|+|||.+.+..++.++|+||||+++|+|++|..||......
T Consensus       134 ~~nil~~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~  212 (267)
T cd08228         134 PANVFITATGVVKLGDLGLGRFFSSKT-TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN  212 (267)
T ss_pred             HHHEEEcCCCCEEECccccceeccchh-HHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCcccccc
Confidence            999999999999999999887653222 1122345788999999998888899999999999999999999887432110


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                                         ..............+......+..+.+++.+||..+|++|||+.++++.|+++
T Consensus       213 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~  265 (267)
T cd08228         213 -------------------LFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQM  265 (267)
T ss_pred             -------------------HHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHh
Confidence                               00111111111111112234567789999999999999999999999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-39  Score=267.19  Aligned_cols=201  Identities=25%  Similarity=0.356  Sum_probs=168.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|.|||+++|.+.+++.+-|.||-.+||||.++++..+++  -.-.+.+...+..||++||.|||   +..|||||||
T Consensus       628 ~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSsLLrskWGP--lKDNEstm~fYtkQILeGLkYLH---en~IVHRDIK  702 (1226)
T KOG4279|consen  628 TLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSSLLRSKWGP--LKDNESTMNFYTKQILEGLKYLH---ENKIVHRDIK  702 (1226)
T ss_pred             HHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHHHHHhccCC--CccchhHHHHHHHHHHHHhhhhh---hcceeecccc
Confidence            479999999999999999999999999999999999988753  22367888899999999999999   9999999999


Q ss_pred             Ccceeec-CCCceeEcccccccccCCCCcceeecccccccccCccccccCC--cccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFN-EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV--FNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~--~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      .+|+|++ ..|.+||+|||.++.+ .+...++.++.||.-|||||++..++  |..++|||||||++.||.||++||.++
T Consensus       703 GDNVLvNTySGvlKISDFGTsKRL-AginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~El  781 (1226)
T KOG4279|consen  703 GDNVLVNTYSGVLKISDFGTSKRL-AGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVEL  781 (1226)
T ss_pred             CCcEEEeeccceEEecccccchhh-ccCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeec
Confidence            9999996 4689999999998876 45566788899999999999997654  889999999999999999999999766


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ++...          ..|.-+-          -...++.+...+.+.+.+|.+|+..||.+||||.++++
T Consensus       782 gspqA----------AMFkVGm----------yKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  782 GSPQA----------AMFKVGM----------YKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             CChhH----------hhhhhcc----------eecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence            53211          1111100          01224455688889999999999999999999999986

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=5.3e-38  Score=249.13  Aligned_cols=201  Identities=19%  Similarity=0.299  Sum_probs=157.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++...++||||+++++|.+++.....   ..+++..+..++.|++.||+|||   +.+++|+|||
T Consensus        49 ~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dik  122 (277)
T cd05607          49 KVNSPFIVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGE---RGLEMERVIHYSAQITCGILHLH---SMDIVYRDMK  122 (277)
T ss_pred             hcCCCcEEEEEEEEecCCeEEEEEecCCCCCHHHHHHhccc---cCCCHHHHHHHHHHHHHHHHHHH---HCCEEEccCC
Confidence            47899999999999999999999999999999988865432   45788888999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++.......  ......++..|+|||++.+..++.++|+||||+++|+|++|..||......
T Consensus       123 p~Nili~~~~~~~l~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~  200 (277)
T cd05607         123 PENVLLDDQGNCRLSDLGLAVELKDGK--TITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEK  200 (277)
T ss_pred             hHhEEEcCCCCEEEeeceeeeecCCCc--eeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcch
Confidence            999999999999999999987653322  122345788999999998888999999999999999999999998543210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                 ..+............ .....+.++.+++..||+.||.+||+++|+++
T Consensus       201 ~~-----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~  249 (277)
T cd05607         201 VA-----------------KEELKRRTLEDEVKF-EHQNFTEESKDICRLFLAKKPEDRLGSREKND  249 (277)
T ss_pred             hh-----------------HHHHHHHhhcccccc-ccccCCHHHHHHHHHHhccCHhhCCCCccchh
Confidence            00                 001111111111111 11234667899999999999999999977654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-37  Score=245.86  Aligned_cols=203  Identities=20%  Similarity=0.313  Sum_probs=161.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+++..+++|||+++++|.+++....    ..+++..+..++.|++.|++|||   +.+++|+|||
T Consensus        61 ~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~di~  133 (266)
T cd05033          61 QFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLREND----GKFTVGQLVGMLRGIASGMKYLS---EMNYVHRDLA  133 (266)
T ss_pred             hCCCCCcceEeEEEecCCceEEEEEcCCCCCHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence            4789999999999999999999999999999999997643    46789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.++|+|||++......... ......++..|+|||.+.+..++.++|+||||+++|++++ |..||....
T Consensus       134 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~  213 (266)
T cd05033         134 ARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMS  213 (266)
T ss_pred             cceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCC
Confidence            99999999999999999998766421111 1112234578999999988889999999999999999998 877774322


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      .                     .+........ .....+...+..+.+++.+||+.+|++|||+.++++.|.++
T Consensus       214 ~---------------------~~~~~~~~~~-~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         214 N---------------------QDVIKAVEDG-YRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             H---------------------HHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            1                     0111111110 00011123456789999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-39  Score=271.63  Aligned_cols=206  Identities=20%  Similarity=0.298  Sum_probs=175.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      |+.||||++|.|+.......+||+|||++|+|..+|+.++    ..++..+..-++..|+.|++||.   +.++|||||.
T Consensus       686 QFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~D----GqftviQLVgMLrGIAsGMkYLs---dm~YVHRDLA  758 (996)
T KOG0196|consen  686 QFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQND----GQFTVIQLVGMLRGIASGMKYLS---DMNYVHRDLA  758 (996)
T ss_pred             cCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcC----CceEeehHHHHHHHHHHHhHHHh---hcCchhhhhh
Confidence            6899999999999999999999999999999999999876    45888888999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcce--eecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHI--TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      .+|||++.+-.+|++|||+++.+.+.....  ...-.-+..|.|||.+...+++.+||+||+|+++||.++ |..||.  
T Consensus       759 ARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYW--  836 (996)
T KOG0196|consen  759 ARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW--  836 (996)
T ss_pred             hhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCccc--
Confidence            999999999999999999999774332111  122233678999999999999999999999999999776 766764  


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                                         ++..++.+.++ ...++.+.+-+++..+.+||..||++|-.+||.+.+++..|+++..+
T Consensus       837 -------------------dmSNQdVIkaI-e~gyRLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrn  894 (996)
T KOG0196|consen  837 -------------------DMSNQDVIKAI-EQGYRLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRN  894 (996)
T ss_pred             -------------------ccchHHHHHHH-HhccCCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcC
Confidence                               34445555444 44455555668899999999999999999999999999999998754

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=2.6e-38  Score=256.56  Aligned_cols=195  Identities=19%  Similarity=0.269  Sum_probs=157.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++||||+++++|.+.+...     ..+++..+..++.||+.||+|||   +++++|||||
T Consensus        51 ~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDik  122 (328)
T cd05593          51 NTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRE-----RVFSEDRTRFYGAEIVSALDYLH---SGKIVYRDLK  122 (328)
T ss_pred             hCCCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccC
Confidence            368999999999999999999999999999999888765     56889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.+||+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||..... 
T Consensus       123 p~NIll~~~~~~kL~DfG~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~-  200 (328)
T cd05593         123 LENLMLDKDGHIKITDFGLCKEGITDA-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-  200 (328)
T ss_pred             HHHeEECCCCcEEEecCcCCccCCCcc-cccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCH-
Confidence            999999999999999999986532211 122345689999999999988899999999999999999999999853221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                          .+...........  .+...+..+.+++.+||..||.+||     ++.++++
T Consensus       201 --------------------~~~~~~~~~~~~~--~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~  250 (328)
T cd05593         201 --------------------EKLFELILMEDIK--FPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMR  250 (328)
T ss_pred             --------------------HHHHHHhccCCcc--CCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhc
Confidence                                0111111111110  1123456788999999999999997     8898875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=9.6e-38  Score=244.20  Aligned_cols=201  Identities=24%  Similarity=0.368  Sum_probs=156.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++||||+++++|.+++....    ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        49 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~  121 (252)
T cd05084          49 QYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEG----PRLKVKELIQMVENAAAGMEYLE---SKHCIHRDLA  121 (252)
T ss_pred             hCCCCCcceEEEEEcCCCCeEEEEeeccCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH---hCCccccccc
Confidence            4789999999999999999999999999999999987542    45789999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcce-eecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHI-TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.++|+|||.+.......... ......+..|+|||.+.+..++.++|+||||+++|++++ |..||....
T Consensus       122 p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~  201 (252)
T cd05084         122 ARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLS  201 (252)
T ss_pred             hheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccC
Confidence            999999999999999999986543221110 111223456999999988889999999999999999998 777765322


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      ..                  ........    ......+...+..+.+++.+||..+|++|||+.++++.|+
T Consensus       202 ~~------------------~~~~~~~~----~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         202 NQ------------------QTREAIEQ----GVRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             HH------------------HHHHHHHc----CCCCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence            10                  00001100    0001111234567899999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=9.4e-38  Score=245.05  Aligned_cols=202  Identities=22%  Similarity=0.328  Sum_probs=158.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++.||||+++++++. ....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +++++|+|||
T Consensus        52 ~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlk  122 (257)
T cd05116          52 QLDNPYIVRMIGICE-AESWMLVMELAELGPLNKFLQKN-----KHVTEKNITELVHQVSMGMKYLE---ETNFVHRDLA  122 (257)
T ss_pred             hCCCCCcceEEEEEc-CCCcEEEEecCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccc
Confidence            368999999999885 45678999999999999999764     46889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcce--eecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHI--TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |.||+++.++.++|+|||++..........  .....++..|+|||.+....++.++|+||||+++||+++ |..||...
T Consensus       123 p~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  202 (257)
T cd05116         123 ARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM  202 (257)
T ss_pred             hhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999987654332211  122234578999999988888999999999999999998 88887543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      ...                  ...+.+..   ... ...+...+..+.++|.+||+.||.+|||+++|.+.|++.+
T Consensus       203 ~~~------------------~~~~~i~~---~~~-~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~~  256 (257)
T cd05116         203 KGN------------------EVTQMIES---GER-MECPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNYY  256 (257)
T ss_pred             CHH------------------HHHHHHHC---CCC-CCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhccc
Confidence            210                  00111111   000 0111235567899999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=1.3e-37  Score=244.37  Aligned_cols=203  Identities=21%  Similarity=0.352  Sum_probs=157.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++. ....++||||+++++|.+++....    ..+++..++.++.|++.||.|||   +++++|+|||
T Consensus        51 ~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk  122 (257)
T cd05115          51 QLDNPYIVRMIGVCE-AEALMLVMEMASGGPLNKFLSGKK----DEITVSNVVELMHQVSMGMKYLE---GKNFVHRDLA  122 (257)
T ss_pred             hcCCCCeEEEEEEEc-CCCeEEEEEeCCCCCHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH---hcCeeecccc
Confidence            478999999999885 456789999999999999987532    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcce--eecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHI--TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++..........  .....++..|+|||.+....++.++|+||||+++|++++ |..||...
T Consensus       123 p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  202 (257)
T cd05115         123 ARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKM  202 (257)
T ss_pred             hheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcC
Confidence            999999999999999999986543222111  111223568999999988889999999999999999996 88887543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      ...                     +......... ....+...+.++.+++.+||..+|++||++.++.+.|+.++
T Consensus       203 ~~~---------------------~~~~~~~~~~-~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~~  256 (257)
T cd05115         203 KGP---------------------EVMSFIEQGK-RLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTYY  256 (257)
T ss_pred             CHH---------------------HHHHHHHCCC-CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhhc
Confidence            210                     0111110100 00111234577889999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-38  Score=253.87  Aligned_cols=198  Identities=24%  Similarity=0.301  Sum_probs=162.5

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++|||||+++++..+.  ..+|+|+|||..|.+...-...     ..+...++++++.++..||.|||   .++|+|||
T Consensus       164 kl~H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~-----~els~~~Ar~ylrDvv~GLEYLH---~QgiiHRD  235 (576)
T KOG0585|consen  164 KLHHPNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDK-----PELSEQQARKYLRDVVLGLEYLH---YQGIIHRD  235 (576)
T ss_pred             hcCCcCeeEEEEeecCcccCceEEEEEeccCCccccCCCCc-----ccccHHHHHHHHHHHHHHHHHHH---hcCeeccc
Confidence            58999999999998765  4789999999988885433221     33889999999999999999999   99999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCC----cceeecccccccccCccccccCC----cccccchhhhhhHHHHHhcC
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGE----THITDTVMGTLGYCAPEYMRTGV----FNEKSNVFSFSVFLFELLTG  150 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~----~~~~~Di~slG~~l~~~~~g  150 (239)
                      |||+|+|++.+|++||+|||.+..+..+.    ........|||+|+|||...++.    .+.+.||||+||++|.++.|
T Consensus       236 IKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG  315 (576)
T KOG0585|consen  236 IKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFG  315 (576)
T ss_pred             cchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhc
Confidence            99999999999999999999987663322    11223467999999999987733    45789999999999999999


Q ss_pred             CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      +.||                     -.+...++.++++......+...+..+.++++|.+||.+||..|.+..+|..
T Consensus       316 ~~PF---------------------~~~~~~~l~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~  371 (576)
T KOG0585|consen  316 QLPF---------------------FDDFELELFDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKL  371 (576)
T ss_pred             cCCc---------------------ccchHHHHHHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhhee
Confidence            7776                     3445567777777777665555567788999999999999999999988753

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=7.7e-38  Score=245.90  Aligned_cols=203  Identities=24%  Similarity=0.402  Sum_probs=162.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++.....   ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        58 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~i~~al~~lH---~~~i~h~dl~  131 (261)
T cd05148          58 RLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEG---QVLPVASLIDMACQVAEGMAYLE---EQNSIHRDLA  131 (261)
T ss_pred             cCCCcchhheeeeEecCCCeEEEEeecccCCHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccC
Confidence            47899999999999999999999999999999999986543   56789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+........ ......++..|+|||......++.++|+||||+++|++++ |..||.....
T Consensus       132 ~~nilv~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~  210 (261)
T cd05148         132 ARNILVGEDLVCKVADFGLARLIKEDVY-LSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNN  210 (261)
T ss_pred             cceEEEcCCceEEEccccchhhcCCccc-cccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCH
Confidence            9999999999999999999866533221 1223345678999999988889999999999999999998 7788753321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                                           .+....... ......+...+..+.+++.+||+.||.+|||++++++.|+.+
T Consensus       211 ---------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         211 ---------------------HEVYDQITA-GYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             ---------------------HHHHHHHHh-CCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence                                 011111111 011111124456788999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.3e-38  Score=249.20  Aligned_cols=193  Identities=22%  Similarity=0.317  Sum_probs=165.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      |+||||+.+|++|++.....|||||..+|.|+|++...     ..+++.+.+.++.||..|+.|+|   .++++|||||.
T Consensus       110 LNHPhII~IyEVFENkdKIvivMEYaS~GeLYDYiSer-----~~LsErEaRhfFRQIvSAVhYCH---knrVvHRDLKL  181 (668)
T KOG0611|consen  110 LNHPHIIQIYEVFENKDKIVIVMEYASGGELYDYISER-----GSLSEREARHFFRQIVSAVHYCH---KNRVVHRDLKL  181 (668)
T ss_pred             cCCCceeehhhhhcCCceEEEEEEecCCccHHHHHHHh-----ccccHHHHHHHHHHHHHHHHHHh---hccceecccch
Confidence            79999999999999999999999999999999999887     67999999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcc-cccchhhhhhHHHHHhcCCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFN-EKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      +|||++.++++||+|||++..+...  ...++++|++-|.+||+.++.+|. +..|.||||+++|.++.|..||++..  
T Consensus       182 ENILLD~N~NiKIADFGLSNly~~~--kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~D--  257 (668)
T KOG0611|consen  182 ENILLDQNNNIKIADFGLSNLYADK--KFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRD--  257 (668)
T ss_pred             hheeecCCCCeeeeccchhhhhccc--cHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCch--
Confidence            9999999999999999998766433  235688999999999999998864 67999999999999999988876433  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                                         ...++.++-.+.+..+   ..+....-||+.||..+|.+|-|+.++...
T Consensus       258 -------------------hk~lvrQIs~GaYrEP---~~PSdA~gLIRwmLmVNP~RRATieDiAsH  303 (668)
T KOG0611|consen  258 -------------------HKRLVRQISRGAYREP---ETPSDASGLIRWMLMVNPERRATIEDIASH  303 (668)
T ss_pred             -------------------HHHHHHHhhcccccCC---CCCchHHHHHHHHHhcCcccchhHHHHhhh
Confidence                               3345555555555433   233445679999999999999999998763

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.5e-37  Score=248.04  Aligned_cols=209  Identities=23%  Similarity=0.373  Sum_probs=162.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-------------------CCCcCCHHHHHHHHHHHHH
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-------------------HFEPLLLKHRLKIAMDIVH   61 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-------------------~~~~~~~~~~~~~~~~i~~   61 (239)
                      +++||||+++++.+...+..++++||+.+++|.+++......                   ....+++..+..++.|++.
T Consensus        59 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~  138 (290)
T cd05045          59 QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISR  138 (290)
T ss_pred             hCCCCCEeeEEEEEecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999998753210                   1135778899999999999


Q ss_pred             HHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhh
Q 044155           62 ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSF  140 (239)
Q Consensus        62 ~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  140 (239)
                      ||.|||   +.+++|+||||+||++++++.++|+|||++......... ......++..|+|||.+.+..++.++|||||
T Consensus       139 ~l~~LH---~~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~sl  215 (290)
T cd05045         139 GMQYLA---EMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSF  215 (290)
T ss_pred             HHHHHH---HCCeehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHH
Confidence            999999   899999999999999999999999999998754322211 1123345678999999988889999999999


Q ss_pred             hhHHHHHhc-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCC
Q 044155          141 SVFLFELLT-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       141 G~~l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R  219 (239)
                      |+++++|++ |..||......         ...         ...    ........+...+..+.+++.+||+.+|.+|
T Consensus       216 G~~l~el~t~g~~p~~~~~~~---------~~~---------~~~----~~~~~~~~~~~~~~~~~~~i~~cl~~~P~~R  273 (290)
T cd05045         216 GVLLWEIVTLGGNPYPGIAPE---------RLF---------NLL----KTGYRMERPENCSEEMYNLMLTCWKQEPDKR  273 (290)
T ss_pred             HHHHHHHHhcCCCCCCCCCHH---------HHH---------HHH----hCCCCCCCCCCCCHHHHHHHHHHccCCcccC
Confidence            999999998 88887532210         000         011    0000111112345678899999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 044155          220 PSMVDVAKKLRQIYR  234 (239)
Q Consensus       220 ps~~ell~~L~~l~~  234 (239)
                      ||+.++++.|++++.
T Consensus       274 p~~~~i~~~l~~~~~  288 (290)
T cd05045         274 PTFADISKELEKMMV  288 (290)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999875

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=1.2e-37  Score=248.94  Aligned_cols=206  Identities=22%  Similarity=0.357  Sum_probs=160.1

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC-----------CCCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-----------PHFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~-----------~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +|+||+++++++..++..+++|||+++++|.+++.....           .....+++..+..++.|++.||+|||   +
T Consensus        74 ~h~~i~~~~~~~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~  150 (293)
T cd05053          74 KHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA---S  150 (293)
T ss_pred             CCCCeeeEEEEEcCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---H
Confidence            799999999999999999999999999999999975321           11256889999999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-  149 (239)
                      .+++|+||||+||+++.++.++|+|||.+......... ......++..|+|||++.+..++.++||||||+++|++++ 
T Consensus       151 ~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~  230 (293)
T cd05053         151 KKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTL  230 (293)
T ss_pred             CCccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcC
Confidence            99999999999999999999999999998765432211 1122234677999999988889999999999999999997 


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||.....                     .+.......... ...+...+..+.+++.+||..||.+|||+.++++.|
T Consensus       231 g~~p~~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l  288 (293)
T cd05053         231 GGSPYPGIPV---------------------EELFKLLKEGYR-MEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDL  288 (293)
T ss_pred             CCCCCCCCCH---------------------HHHHHHHHcCCc-CCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHH
Confidence            8777643221                     011111111100 001113346788999999999999999999999999


Q ss_pred             HHHH
Q 044155          230 RQIY  233 (239)
Q Consensus       230 ~~l~  233 (239)
                      .++.
T Consensus       289 ~~~~  292 (293)
T cd05053         289 DRML  292 (293)
T ss_pred             HHhh
Confidence            9875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=2.2e-37  Score=243.62  Aligned_cols=204  Identities=24%  Similarity=0.343  Sum_probs=159.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+ ...++||||+++++|.+++.....   ..+++..+..++.|++.||+|||   +.+++|+|||
T Consensus        57 ~l~~~~i~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~  129 (262)
T cd05071          57 KLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGEMG---KYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLR  129 (262)
T ss_pred             hCCCCCcceEEEEECC-CCcEEEEEcCCCCcHHHHHhhccc---cCCCHHHHHHHHHHHHHHHHHHH---HCCccccccC
Confidence            4789999999998754 557899999999999999976432   45788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+...............++..|+|||+.....++.++|+||||+++|++++ |..||.....
T Consensus       130 p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~  209 (262)
T cd05071         130 AANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN  209 (262)
T ss_pred             cccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCh
Confidence            999999999999999999987654332222223345678999999988889999999999999999999 7667643221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                                           .+....... ..........+..+.+++.+||+.||.+|||+.++++.|++.+
T Consensus       210 ---------------------~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~~  261 (262)
T cd05071         210 ---------------------REVLDQVER-GYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  261 (262)
T ss_pred             ---------------------HHHHHHHhc-CCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHhc
Confidence                                 011111100 0011112245677899999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=1e-37  Score=244.68  Aligned_cols=200  Identities=22%  Similarity=0.395  Sum_probs=157.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..++||||+++++|.+++....    ..+++..+..++.|++.||+|||   +.+++|+|||
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~  127 (256)
T cd05059          55 KLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERK----GKLGTEWLLDMCSDVCEAMEYLE---SNGFIHRDLA  127 (256)
T ss_pred             hCCCCCEEEEEEEEcCCCceEEEEecCCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHH---HCCccccccc
Confidence            4789999999999999899999999999999999997643    45789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.++..............++..|+|||.+.+..++.++|+||||+++|++++ |..||.....
T Consensus       128 p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~  207 (256)
T cd05059         128 ARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSN  207 (256)
T ss_pred             HhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCH
Confidence            999999999999999999886553322111122234457999999988889999999999999999999 7777753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      .                     +...... .......+...+..+.+++.+||..+|.+|||+.|+++.|
T Consensus       208 ~---------------------~~~~~~~-~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         208 S---------------------EVVESVS-AGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             H---------------------HHHHHHH-cCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence            1                     0000000 0000011113456789999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-38  Score=256.45  Aligned_cols=200  Identities=20%  Similarity=0.240  Sum_probs=158.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++...     ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        57 ~~~h~~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-----~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk  128 (333)
T cd05600          57 TTKSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNL-----GVLSEDHARFYMAEMFEAVDALH---ELGYIHRDLK  128 (333)
T ss_pred             hCCCCCCccEEEEEEcCCEEEEEEeCCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence            367999999999999999999999999999999999765     56888999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.+||+|||++.....    ......|++.|+|||++.+..++.++||||||+++|+|++|..||......
T Consensus       129 p~Nil~~~~~~~kL~Dfg~a~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~  204 (333)
T cd05600         129 PENFLIDASGHIKLTDFGLSKGIVT----YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPN  204 (333)
T ss_pred             HHHEEECCCCCEEEEeCcCCccccc----ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHH
Confidence            9999999999999999999865432    223456899999999999889999999999999999999999998643211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...        .....   +..    ..............+.++.+++.+||..+|.+|||+++++.
T Consensus       205 ~~~--------~~i~~---~~~----~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~  256 (333)
T cd05600         205 ETW--------ENLKY---WKE----TLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKN  256 (333)
T ss_pred             HHH--------HHHHh---ccc----cccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHHh
Confidence            000        00000   000    00000000000134677899999999999999999999986

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-37  Score=245.45  Aligned_cols=199  Identities=20%  Similarity=0.259  Sum_probs=158.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++...++|+|++++++|.+.+...     ..++...+..++.|++.||.|||   +.+++|+||+
T Consensus        60 ~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~  131 (263)
T cd06625          60 NLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAY-----GALTETVTRKYTRQILEGVEYLH---SNMIVHRDIK  131 (263)
T ss_pred             hCCCCCeeeeEEEEccCCeEEEEEEECCCCcHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            478999999999999999999999999999999999765     56788999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCccee--ecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHIT--DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+||+++.++.++|+|||.+...........  ....++..|+|||.+.+..++.++||||||+++|++++|+.||....
T Consensus       132 p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  211 (263)
T cd06625         132 GANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFE  211 (263)
T ss_pred             HHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccc
Confidence            9999999999999999999865432211111  23457788999999998889999999999999999999999875321


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      ..                     ...............+...+..+.+++.+||..+|.+|||+.++++.
T Consensus       212 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         212 AM---------------------AAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             hH---------------------HHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence            10                     00001111111111122455678899999999999999999999863

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=3.7e-38  Score=255.21  Aligned_cols=195  Identities=21%  Similarity=0.297  Sum_probs=156.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..++..++||||+.+++|.+.+...     ..+....+..++.|++.||.|||   +.+++|+|||
T Consensus        56 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk  127 (323)
T cd05584          56 AVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMHLERE-----GIFMEDTACFYLSEISLALEHLH---QQGIIYRDLK  127 (323)
T ss_pred             hCCCCchhceeeEEecCCeEEEEEeCCCCchHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            478999999999999999999999999999999999765     45778888899999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||..... 
T Consensus       128 p~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~-  205 (323)
T cd05584         128 PENILLDAQGHVKLTDFGLCKESIHEG-TVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENR-  205 (323)
T ss_pred             HHHeEECCCCCEEEeeCcCCeecccCC-CcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCH-
Confidence            999999999999999999986432221 122345689999999999988899999999999999999999999854221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                          .............  .+...++.+.+++.+||+.||++||     +++++++
T Consensus       206 --------------------~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         206 --------------------KKTIDKILKGKLN--LPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             --------------------HHHHHHHHcCCCC--CCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence                                0111111111111  1113456788999999999999999     7888766

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.1e-37  Score=247.97  Aligned_cols=217  Identities=23%  Similarity=0.360  Sum_probs=160.4

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++...  ...+++|||+++++|.+++..      ..+++..+..++.|++.||.|||   +.+++|+|
T Consensus        62 ~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~------~~l~~~~~~~i~~~l~~~l~~lH---~~~i~H~d  132 (283)
T cd05080          62 TLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPK------HKLNLAQLLLFAQQICEGMAYLH---SQHYIHRD  132 (283)
T ss_pred             hCCCCCEeeEEEEEecCCCceEEEEecCCCCCCHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH---HCCeeccc
Confidence            47899999999988754  357899999999999999865      35889999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||+||+++.++.++|+|||++.........  ......++..|+|||.+....++.++||||||+++|+|++|..|+..
T Consensus       133 lkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~  212 (283)
T cd05080         133 LAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQS  212 (283)
T ss_pred             cChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999998765432211  11223356679999999888899999999999999999999988754


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      .......      ............... ...........+...+..+.+++..||+.+|++|||++++++.|+++.
T Consensus       213 ~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         213 PPKKFEE------MIGPKQGQMTVVRLI-ELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             Ccchhhh------hhcccccccchhhhh-hhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            3221000      000000000000000 001111111111244578999999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=2.9e-38  Score=255.84  Aligned_cols=191  Identities=21%  Similarity=0.278  Sum_probs=154.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++...     ..+++..+..++.||+.||.|||   +++++|||||
T Consensus        52 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~givH~dik  123 (323)
T cd05575          52 NVKHPFLVGLHYSFQTADKLYFVLDYVNGGELFFHLQRE-----RSFPEPRARFYAAEIASALGYLH---SLNIIYRDLK  123 (323)
T ss_pred             hCCCCCCCCeeEEEEeCCEEEEEEcCCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCC
Confidence            378999999999999999999999999999999988765     56888999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.+||+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||....  
T Consensus       124 p~NIll~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~--  200 (323)
T cd05575         124 PENILLDSQGHVVLTDFGLCKEGIEHS-KTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRD--  200 (323)
T ss_pred             HHHeEECCCCcEEEeccCCCcccccCC-CccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCC--
Confidence            999999999999999999986532211 12334568999999999998889999999999999999999999985321  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                                         ..+............  ....+..+.+++.+||+.||.+||++.
T Consensus       201 -------------------~~~~~~~i~~~~~~~--~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         201 -------------------TAEMYDNILNKPLRL--KPNISVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             -------------------HHHHHHHHHcCCCCC--CCCCCHHHHHHHHHHhhcCHHhCCCCC
Confidence                               111111111111110  113356788999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-38  Score=238.34  Aligned_cols=183  Identities=23%  Similarity=0.353  Sum_probs=161.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      +.||+++++++.|.+....++||||.+||-|.+++++.     .++++..++-++.||+.||.|||   ..+|++|||||
T Consensus       101 v~~PFlv~l~~t~~d~~~lymvmeyv~GGElFS~Lrk~-----~rF~e~~arFYAAeivlAleylH---~~~iiYRDLKP  172 (355)
T KOG0616|consen  101 VSHPFLVKLYGTFKDNSNLYMVMEYVPGGELFSYLRKS-----GRFSEPHARFYAAEIVLALEYLH---SLDIIYRDLKP  172 (355)
T ss_pred             ccCceeEEEEEeeccCCeEEEEEeccCCccHHHHHHhc-----CCCCchhHHHHHHHHHHHHHHHH---hcCeeeccCCh
Confidence            57999999999999999999999999999999999887     67999999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +|||++.+|-+||+|||+++.....    +-+.+|||.|+|||++.+.+++.++|-||||+++|||+.|..||..     
T Consensus       173 ENiLlD~~G~iKitDFGFAK~v~~r----T~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~-----  243 (355)
T KOG0616|consen  173 ENLLLDQNGHIKITDFGFAKRVSGR----TWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYD-----  243 (355)
T ss_pred             HHeeeccCCcEEEEeccceEEecCc----EEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcC-----
Confidence            9999999999999999999876543    4477899999999999999999999999999999999999888753     


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCC
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R  219 (239)
                                      ........+++...+.-  +...+.++++|+...|+.|-++|
T Consensus       244 ----------------~~~~~iY~KI~~~~v~f--P~~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  244 ----------------DNPIQIYEKILEGKVKF--PSYFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             ----------------CChHHHHHHHHhCcccC--CcccCHHHHHHHHHHHhhhhHhh
Confidence                            22355666666666542  23566788999999999999888

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=1.4e-37  Score=249.72  Aligned_cols=204  Identities=18%  Similarity=0.361  Sum_probs=160.6

Q ss_pred             C-CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 M-SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l-~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      + +||||+++++++...+..+++|||+.+++|.++++....   ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        95 l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~---~~l~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlk  168 (302)
T cd05055          95 LGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRE---SFLTLEDLLSFSYQVAKGMAFLA---SKNCIHRDLA  168 (302)
T ss_pred             ccCCCCcceEEEEEecCCceEEEEEcCCCCcHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeehhhhc
Confidence            5 799999999999999999999999999999999976432   34789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.++++|||++........ .......++..|+|||.+.+..++.++||||||+++|++++ |..||....
T Consensus       169 p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~  248 (302)
T cd05055         169 ARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMP  248 (302)
T ss_pred             cceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCC
Confidence            9999999999999999999875533221 11223345678999999988889999999999999999998 888875332


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      ...                 .........    .....+...+..+.+++.+||..+|++|||+.|+++.|.++
T Consensus       249 ~~~-----------------~~~~~~~~~----~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         249 VDS-----------------KFYKLIKEG----YRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             chH-----------------HHHHHHHcC----CcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence            100                 000011000    00001112346789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=1.4e-37  Score=251.24  Aligned_cols=205  Identities=19%  Similarity=0.324  Sum_probs=159.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||++++|++... ..++++||+++|+|.+++....    ..++......++.|++.||+|||   +.+++|+|||
T Consensus        65 ~l~h~niv~~~g~~~~~-~~~~v~e~~~~g~l~~~l~~~~----~~~~~~~~~~~~~qi~~~L~~LH---~~~iiH~dlk  136 (316)
T cd05108          65 SVDNPHVCRLLGICLTS-TVQLITQLMPFGCLLDYVREHK----DNIGSQYLLNWCVQIAKGMNYLE---ERRLVHRDLA  136 (316)
T ss_pred             hCCCCCCCeEEEEEcCC-CceeeeecCCCCCHHHHHHhcc----ccCCHHHHHHHHHHHHHHHHHHH---hcCeeccccc
Confidence            47899999999999765 4678999999999999998653    45788899999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcce-eecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHI-TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.+||+|||++.......... .....++..|+|||.+....++.++||||||+++|++++ |..||....
T Consensus       137 p~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~  216 (316)
T cd05108         137 ARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP  216 (316)
T ss_pred             hhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC
Confidence            999999999999999999987654322211 112234668999999998889999999999999999997 888875322


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ..        +. .         ..    .......+.+...+..+.+++.+||..+|.+|||+.+++..+..+...
T Consensus       217 ~~--------~~-~---------~~----~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~  271 (316)
T cd05108         217 AS--------EI-S---------SI----LEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  271 (316)
T ss_pred             HH--------HH-H---------HH----HhCCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcC
Confidence            10        00 0         00    000000011112345678999999999999999999999999887653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=5.7e-38  Score=254.71  Aligned_cols=198  Identities=23%  Similarity=0.313  Sum_probs=154.3

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .+||||+++++++...+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +++++||||||
T Consensus        53 ~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~~-----~~l~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dikp  124 (329)
T cd05618          53 SNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ-----RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKL  124 (329)
T ss_pred             CCCCcCCceeeEEEeCCEEEEEEeCCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCH
Confidence            37999999999999999999999999999999888765     56889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++|+||||+++|+|++|..||.......
T Consensus       125 ~Nili~~~~~~kL~DfG~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~  203 (329)
T cd05618         125 DNVLLDSEGHIKLTDYGMCKEGLRPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSD  203 (329)
T ss_pred             HHEEECCCCCEEEeeCCccccccCCC-CccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcC
Confidence            99999999999999999986532211 12234568999999999998889999999999999999999999986433211


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                      .....            ...............  .+...+..+.+++.+||+.||.+|||+
T Consensus       204 ~~~~~------------~~~~~~~~i~~~~~~--~p~~~~~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         204 NPDQN------------TEDYLFQVILEKQIR--IPRSLSVKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             Ccccc------------cHHHHHHHHhcCCCC--CCCCCCHHHHHHHHHHhcCCHHHcCCC
Confidence            11100            000011111111111  112345678899999999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=6e-38  Score=254.14  Aligned_cols=193  Identities=23%  Similarity=0.317  Sum_probs=154.3

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+++..++||||+++++|...+..      ..+++..+..++.|++.||.|||   +.+++||||||
T Consensus        59 l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~------~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrdlkp  129 (324)
T cd05589          59 ERHPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIHT------DVFSEPRAVFYAACVVLGLQYLH---ENKIVYRDLKL  129 (324)
T ss_pred             cCCCChhceeeEEEcCCEEEEEEcCCCCCcHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCH
Confidence            5799999999999999999999999999999888754      45889999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.+||+|||++...... ........|++.|+|||.+.+..++.++||||||+++|+|++|..||.....  
T Consensus       130 ~Nill~~~~~~kL~Dfg~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~--  206 (324)
T cd05589         130 DNLLLDTEGFVKIADFGLCKEGMGF-GDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDE--  206 (324)
T ss_pred             HHeEECCCCcEEeCcccCCccCCCC-CCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCH--
Confidence            9999999999999999987643221 1123345689999999999988899999999999999999999999853221  


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                         .+...........  .+...+..+.+++.+||+.||.+||     ++.++++
T Consensus       207 -------------------~~~~~~i~~~~~~--~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~  256 (324)
T cd05589         207 -------------------EEVFDSIVNDEVR--YPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKK  256 (324)
T ss_pred             -------------------HHHHHHHHhCCCC--CCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhh
Confidence                               1111111111111  1123456788999999999999999     4666654

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=1.5e-37  Score=246.64  Aligned_cols=205  Identities=25%  Similarity=0.405  Sum_probs=160.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC---------CCCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ---------PHFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~---------~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +++||||+++++++......++||||+++++|.+++.....         .....+++..+..++.|++.|+.+||   +
T Consensus        64 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~  140 (280)
T cd05049          64 NFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLA---S  140 (280)
T ss_pred             hcCCCCchheeeEEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHh---h
Confidence            36899999999999999999999999999999999976532         11145788899999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-  149 (239)
                      .+++|+||||+||+++.++.++|+|||.+........ .......+++.|+|||++.+..++.++||||||+++|+|++ 
T Consensus       141 ~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~  220 (280)
T cd05049         141 QHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTY  220 (280)
T ss_pred             CCeeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999865422211 11223345678999999998899999999999999999998 


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||......                     +............ .+...+..+.+++.+||..||.+|||+.|+++.|
T Consensus       221 g~~p~~~~~~~---------------------~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l  278 (280)
T cd05049         221 GKQPWYGLSNE---------------------EVIECITQGRLLQ-RPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERL  278 (280)
T ss_pred             CCCCCCCCCHH---------------------HHHHHHHcCCcCC-CCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHh
Confidence            98887532210                     1111111111111 1124557789999999999999999999999988


Q ss_pred             H
Q 044155          230 R  230 (239)
Q Consensus       230 ~  230 (239)
                      .
T Consensus       279 ~  279 (280)
T cd05049         279 Q  279 (280)
T ss_pred             h
Confidence            5

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-38  Score=261.78  Aligned_cols=207  Identities=22%  Similarity=0.365  Sum_probs=171.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      |+|||+|+++|+|..+..+|||+|||..|+|.|++++.+.   ..++.-..++++.||..|+.||.   .++++||||..
T Consensus       320 ikHpNLVqLLGVCT~EpPFYIiTEfM~yGNLLdYLRecnr---~ev~avvLlyMAtQIsSaMeYLE---kknFIHRDLAA  393 (1157)
T KOG4278|consen  320 IKHPNLVQLLGVCTHEPPFYIITEFMCYGNLLDYLRECNR---SEVPAVVLLYMATQISSAMEYLE---KKNFIHRDLAA  393 (1157)
T ss_pred             hcCccHHHHhhhhccCCCeEEEEecccCccHHHHHHHhch---hhcchhHHHHHHHHHHHHHHHHH---Hhhhhhhhhhh
Confidence            7899999999999999999999999999999999998866   67888999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~~  160 (239)
                      +|+|++.+..+|++|||+++.+..-.........-++.|.|||.+....++.++|+|+||+++||+.| |..||.+..- 
T Consensus       394 RNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidl-  472 (1157)
T KOG4278|consen  394 RNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-  472 (1157)
T ss_pred             hhccccccceEEeeccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccH-
Confidence            99999999999999999999875433222223345789999999999999999999999999999987 6567654331 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                                          ..++ ..+.+.++-..+..+++.+.+||+.||++.|++||+++|+-+.++.+..+-
T Consensus       473 --------------------SqVY-~LLEkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~~s  527 (1157)
T KOG4278|consen  473 --------------------SQVY-GLLEKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFSSS  527 (1157)
T ss_pred             --------------------HHHH-HHHhccccccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccc
Confidence                                1111 112222222223477889999999999999999999999999999876543

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=1.8e-37  Score=248.40  Aligned_cols=207  Identities=21%  Similarity=0.327  Sum_probs=159.9

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +||||+++++++...+..++++||+++++|.+++......           ....++...+..++.|++.||+|||   +
T Consensus        61 ~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH---~  137 (297)
T cd05089          61 HHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS---E  137 (297)
T ss_pred             CCCchhheEEEEccCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            7999999999999989999999999999999999764210           1135788999999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-C
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-G  150 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g  150 (239)
                      ++++|+||||+||+++.++.+||+|||++.......  .......+..|+|||+..+..++.++||||||+++|+|++ |
T Consensus       138 ~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g  215 (297)
T cd05089         138 KQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYV--KKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLG  215 (297)
T ss_pred             CCcccCcCCcceEEECCCCeEEECCcCCCcccccee--ccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999875432111  1111223557999999988889999999999999999997 8


Q ss_pred             CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      ..||.....                     .+........ .....+...+..+.+++.+||+.+|.+|||++++++.|.
T Consensus       216 ~~pf~~~~~---------------------~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~  273 (297)
T cd05089         216 GTPYCGMTC---------------------AELYEKLPQG-YRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLS  273 (297)
T ss_pred             CCCCCCCCH---------------------HHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence            888753221                     0011111110 000111234567889999999999999999999999999


Q ss_pred             HHHHhh
Q 044155          231 QIYRSL  236 (239)
Q Consensus       231 ~l~~~~  236 (239)
                      ++....
T Consensus       274 ~~~~~~  279 (297)
T cd05089         274 RMLEAR  279 (297)
T ss_pred             HHHHhh
Confidence            887643

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=3.7e-38  Score=255.46  Aligned_cols=195  Identities=18%  Similarity=0.268  Sum_probs=156.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~i~H~dl   79 (239)
                      +++||||+++++++......++||||+++++|.+++...     ..+++..+..++.|++.||.|||   + .+++||||
T Consensus        51 ~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~lH---~~~~ivHrDi  122 (325)
T cd05594          51 NSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE-----RVFSEDRARFYGAEIVSALDYLH---SEKNVVYRDL  122 (325)
T ss_pred             hCCCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hcCCEEecCC
Confidence            368999999999999999999999999999999888765     56889999999999999999999   6 79999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||+||+++.++.+||+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||.....
T Consensus       123 kp~NIll~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~  201 (325)
T cd05594         123 KLENLMLDKDGHIKITDFGLCKEGIKDG-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  201 (325)
T ss_pred             CCCeEEECCCCCEEEecCCCCeecCCCC-cccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCH
Confidence            9999999999999999999986532211 122345689999999999988899999999999999999999999853221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                           .............  .+...++.+.+++.+||+.||.+|+     ++.++++
T Consensus       202 ---------------------~~~~~~i~~~~~~--~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~  251 (325)
T cd05594         202 ---------------------EKLFELILMEEIR--FPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQ  251 (325)
T ss_pred             ---------------------HHHHHHHhcCCCC--CCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence                                 0111111111110  0113456788999999999999997     8998875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=2.2e-37  Score=241.84  Aligned_cols=201  Identities=23%  Similarity=0.365  Sum_probs=158.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++||||+++++|.+++....    ..+++..+..++.|++.||.|+|   +.+++|+|||
T Consensus        48 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~~~H~dl~  120 (250)
T cd05085          48 QYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKK----DELKTKQLVKFALDAAAGMAYLE---SKNCIHRDLA  120 (250)
T ss_pred             hCCCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccC
Confidence            4689999999999999999999999999999999886543    45788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++++|||++...............++..|+|||++.+..++.++|+||||+++|++++ |..||.....
T Consensus       121 p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~  200 (250)
T cd05085         121 ARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTN  200 (250)
T ss_pred             hheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCH
Confidence            999999999999999999986543332222223344677999999988889999999999999999998 8888753321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      ..                     ....... ......+...+..+.+++.+||..+|.+|||+.++++.|.
T Consensus       201 ~~---------------------~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         201 QQ---------------------AREQVEK-GYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             HH---------------------HHHHHHc-CCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            00                     0000000 0000001134567899999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=7.2e-38  Score=254.48  Aligned_cols=198  Identities=22%  Similarity=0.282  Sum_probs=155.6

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++...+..++||||+++++|.+++...     ..+++..+..++.|++.||+|||   +++++||||||+
T Consensus        63 ~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~  134 (332)
T cd05614          63 QSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQR-----DNFSEDEVRFYSGEIILALEHLH---KLGIVYRDIKLE  134 (332)
T ss_pred             CCCCcccEEEEEecCCEEEEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHH
Confidence            5999999999999999999999999999999998765     56889999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      |||++.++.++|+|||++...............|++.|+|||++.+. .++.++||||||+++|+|++|..||.......
T Consensus       135 Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~  214 (332)
T cd05614         135 NILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERN  214 (332)
T ss_pred             HeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCC
Confidence            99999999999999999876533322233345689999999998765 47889999999999999999999986332110


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                      ..                 ...........  ...+...+..+.+++.+||+.||++||     +++++++
T Consensus       215 ~~-----------------~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  266 (332)
T cd05614         215 TQ-----------------SEVSRRILKCD--PPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKE  266 (332)
T ss_pred             CH-----------------HHHHHHHhcCC--CCCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence            00                 00111111111  011123456788999999999999999     6777765

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=3.4e-37  Score=242.30  Aligned_cols=202  Identities=22%  Similarity=0.314  Sum_probs=157.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++. .+..+++|||+.+++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        57 ~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dl~  129 (260)
T cd05069          57 KLRHDKLVPLYAVVS-EEPIYIVTEFMGKGSLLDFLKEGDG---KYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLR  129 (260)
T ss_pred             hCCCCCeeeEEEEEc-CCCcEEEEEcCCCCCHHHHHhhCCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccC
Confidence            478999999999875 4567899999999999999976432   45788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||++++++.++|+|||.+...............++..|+|||...+...+.++|+||||+++|++++ |..||....+
T Consensus       130 ~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~  209 (260)
T cd05069         130 AANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVN  209 (260)
T ss_pred             cceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            999999999999999999987653332222223345678999999988889999999999999999999 7778753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .                     +....... ......+...+..+.+++.+||..||.+|||++++++.|++
T Consensus       210 ~---------------------~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         210 R---------------------EVLEQVER-GYRMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             H---------------------HHHHHHHc-CCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            0                     00001100 00111112456778999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=2.8e-37  Score=244.08  Aligned_cols=204  Identities=22%  Similarity=0.317  Sum_probs=157.6

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC-----------CCCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-----------PHFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~-----------~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +||||+++++++...+..+++|||+++++|.+++.....           .....++...+..++.|++.||+|||   +
T Consensus        54 ~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH---~  130 (270)
T cd05047          54 HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---Q  130 (270)
T ss_pred             cCCCeeeEEEEEecCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            799999999999999999999999999999999976431           01135788999999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-C
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-G  150 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g  150 (239)
                      .+++|+||||+||+++.++.++++|||++.......  .......+..|+|||++....++.++|+||||+++|+|++ |
T Consensus       131 ~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~--~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g  208 (270)
T cd05047         131 KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV--KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLG  208 (270)
T ss_pred             CCEeecccccceEEEcCCCeEEECCCCCccccchhh--hccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999875322111  1111223567999999988889999999999999999997 8


Q ss_pred             CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      ..||.....        .             +........ .........+..+.+++.+||..+|.+|||+.+++..|.
T Consensus       209 ~~pf~~~~~--------~-------------~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~  266 (270)
T cd05047         209 GTPYCGMTC--------A-------------ELYEKLPQG-YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLN  266 (270)
T ss_pred             CCCccccCH--------H-------------HHHHHHhCC-CCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHH
Confidence            888753221        0             000000000 000001134456889999999999999999999999999


Q ss_pred             HHH
Q 044155          231 QIY  233 (239)
Q Consensus       231 ~l~  233 (239)
                      ++.
T Consensus       267 ~~~  269 (270)
T cd05047         267 RML  269 (270)
T ss_pred             Hhh
Confidence            875

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=7.1e-38  Score=254.16  Aligned_cols=202  Identities=22%  Similarity=0.313  Sum_probs=156.9

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+.+..++||||+++++|.+++...     ..+++..+..++.|++.||.|||   +++++||||||+
T Consensus        54 ~hp~Iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~-----~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~  125 (329)
T cd05588          54 NHPFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQ-----RKLPEEHARFYSAEISLALNFLH---ERGIIYRDLKLD  125 (329)
T ss_pred             CCCCCCceEEEEEcCCEEEEEEeCCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHH
Confidence            7999999999999999999999999999999888765     56899999999999999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      ||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++|+||||+++|+|++|..||+.......
T Consensus       126 Nili~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~  204 (329)
T cd05588         126 NVLLDAEGHIKLTDYGMCKEGIRPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDN  204 (329)
T ss_pred             HeEECCCCCEEECcCccccccccCC-CccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCccccccccc
Confidence            9999999999999999986432111 122345689999999999988899999999999999999999999964332211


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC------HHHHHH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS------MVDVAK  227 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps------~~ell~  227 (239)
                      .......            ............  .+...+..+.+++.+||+.||.+|||      ++++++
T Consensus       205 ~~~~~~~------------~~~~~~~~~~~~--~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~  261 (329)
T cd05588         205 PDQNTED------------YLFQVILEKQIR--IPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKS  261 (329)
T ss_pred             ccccchH------------HHHHHHHcCCCC--CCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhc
Confidence            1100000            111111111111  11234567889999999999999998      566653

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=6.3e-38  Score=253.54  Aligned_cols=188  Identities=22%  Similarity=0.327  Sum_probs=153.1

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+.+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +++++||||||+
T Consensus        54 ~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~L~~~i~~~-----~~l~~~~~~~~~~ql~~~L~~lH---~~~ivH~dlkp~  125 (320)
T cd05590          54 NHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKS-----RRFDEARARFYAAEITSALMFLH---DKGIIYRDLKLD  125 (320)
T ss_pred             CCCchhceeeEEEcCCEEEEEEcCCCCchHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHH
Confidence            7999999999999999999999999999999988765     56889999999999999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      ||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||.....   
T Consensus       126 NIli~~~~~~kL~DfG~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~---  201 (320)
T cd05590         126 NVLLDHEGHCKLADFGMCKEGIFNG-KTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENE---  201 (320)
T ss_pred             HeEECCCCcEEEeeCCCCeecCcCC-CcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH---
Confidence            9999999999999999986532221 123345689999999999988899999999999999999999999864221   


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                                        .+....+......  .+...+..+.+++.+||+.||.+||++
T Consensus       202 ------------------~~~~~~i~~~~~~--~~~~~~~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         202 ------------------DDLFEAILNDEVV--YPTWLSQDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             ------------------HHHHHHHhcCCCC--CCCCCCHHHHHHHHHHcccCHHHCCCC
Confidence                              1111111111111  111345678899999999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=6.2e-38  Score=253.16  Aligned_cols=194  Identities=22%  Similarity=0.324  Sum_probs=155.5

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++..+...++||||+++++|.+++...     ..++...+..++.|++.||.|||   +++++||||||
T Consensus        53 ~~hp~i~~~~~~~~~~~~~~lv~e~~~gg~L~~~~~~~-----~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dlkp  124 (316)
T cd05592          53 WEHPFLTHLFCTFQTKEHLFFVMEYLNGGDLMFHIQSS-----GRFDEARARFYAAEIICGLQFLH---KKGIIYRDLKL  124 (316)
T ss_pred             cCCCCccceeeEEEcCCEEEEEEcCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCH
Confidence            47999999999999999999999999999999998765     56889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.+||+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||.....  
T Consensus       125 ~Nill~~~~~~kL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~--  201 (316)
T cd05592         125 DNVLLDKDGHIKIADFGMCKENMNGE-GKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDE--  201 (316)
T ss_pred             HHeEECCCCCEEEccCcCCeECCCCC-CccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCH--
Confidence            99999999999999999986543222 223355689999999999988899999999999999999999999864321  


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH-HHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV-DVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~-ell~  227 (239)
                                         .+..........  ..+...+..+.+++.+||+.||.+||++. ++++
T Consensus       202 -------------------~~~~~~i~~~~~--~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05592         202 -------------------DELFDSILNDRP--HFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQ  247 (316)
T ss_pred             -------------------HHHHHHHHcCCC--CCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHc
Confidence                               011111111110  01123456678999999999999999865 5543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=6.6e-38  Score=251.64  Aligned_cols=217  Identities=18%  Similarity=0.225  Sum_probs=154.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+. ++|.+++....    ..++...+..++.|++.||+|||   +.+++|+|||
T Consensus        59 ~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlk  130 (303)
T cd07869          59 GLKHANIVLLHDIIHTKETLTLVFEYVH-TDLCQYMDKHP----GGLHPENVKLFLFQLLRGLSYIH---QRYILHRDLK  130 (303)
T ss_pred             hCCCCCcCeEEEEEecCCeEEEEEECCC-cCHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            4789999999999999999999999996 78888887543    45788899999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||++....... .......+++.|+|||++.+ ..++.++||||||+++|+|++|..||....+
T Consensus       131 p~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~  209 (303)
T cd07869         131 PQNLLISDTGELKLADFGLARAKSVPS-HTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKD  209 (303)
T ss_pred             HHHEEECCCCCEEECCCCcceeccCCC-ccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCcc
Confidence            999999999999999999986532211 11233457889999999865 4578899999999999999999999975433


Q ss_pred             cccccccchhhhhhhhhccchhhhh-----hh-hhhcCCCcHHH-----HHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIV-----DH-IVVEDVSSIEK-----EQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~-----~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..............+ ....+....     .. ...........     ...+..+.+++.+||+.||++|||+.|+++
T Consensus       210 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         210 IQDQLERIFLVLGTP-NEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             HHHHHHHHHHHhCCC-ChhhccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence            211100000000000 000000000     00 00000000000     012356789999999999999999999986

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.7e-37  Score=252.84  Aligned_cols=217  Identities=19%  Similarity=0.256  Sum_probs=154.0

Q ss_pred             CCCCcccceeeEEEEeCC-----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLETP-----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~-----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++....     ..++||||+. ++|.+++...     ..+++..+..++.|++.||.|||   +.+++
T Consensus        55 ~l~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~LH---~~~iv  125 (338)
T cd07859          55 LLRHPDIVEIKHIMLPPSRREFKDIYVVFELME-SDLHQVIKAN-----DDLTPEHHQFFLYQLLRALKYIH---TANVF  125 (338)
T ss_pred             hCCCCCEeeecceEeccCCCCCceEEEEEecCC-CCHHHHHHhc-----ccCCHHHHHHHHHHHHHHHHHHH---HCCee
Confidence            478999999999886432     4689999996 7999988765     56889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCC--cceeecccccccccCcccccc--CCcccccchhhhhhHHHHHhcCC
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGTLGYCAPEYMRT--GVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      |+||||+||+++.++.+||+|||++.......  ........+++.|+|||++.+  ..++.++||||||+++|+|++|+
T Consensus       126 H~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~  205 (338)
T cd07859         126 HRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGK  205 (338)
T ss_pred             cCCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999986542211  111234568999999999865  56889999999999999999999


Q ss_pred             CCccccccccccc-------ccchhhhhhhhhccchhhhhhhhhhcCCCcHH--HHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          152 DVSDLVKDVHDLV-------CPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIE--KEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       152 ~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                      .||..........       .+....... ......................  ....++.+.+++.+||+.||++|||+
T Consensus       206 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~  284 (338)
T cd07859         206 PLFPGKNVVHQLDLITDLLGTPSPETISR-VRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTA  284 (338)
T ss_pred             CCCCCCChHHHHHHHHHHhCCCCHHHHHH-hhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCH
Confidence            9986533211000       000000000 0000000111111110000000  01234667899999999999999999


Q ss_pred             HHHHH
Q 044155          223 VDVAK  227 (239)
Q Consensus       223 ~ell~  227 (239)
                      +|+++
T Consensus       285 ~e~l~  289 (338)
T cd07859         285 EEALA  289 (338)
T ss_pred             HHHhc
Confidence            99986

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=2.4e-37  Score=248.36  Aligned_cols=207  Identities=21%  Similarity=0.300  Sum_probs=159.8

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +||||+++++++...+..++||||+++++|.++++.....           ....++...++.++.|++.||+|||   +
T Consensus        66 ~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~  142 (303)
T cd05088          66 HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---Q  142 (303)
T ss_pred             CCCCcceEEEEECCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH---h
Confidence            7999999999999999999999999999999999764310           0135788999999999999999999   9


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-C
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-G  150 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g  150 (239)
                      .+++|+||||+||+++.++.++|+|||++.......  .......+..|+|||.+.+..++.++||||||+++|+++| |
T Consensus       143 ~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g  220 (303)
T cd05088         143 KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV--KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLG  220 (303)
T ss_pred             CCccccccchheEEecCCCcEEeCccccCcccchhh--hcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcC
Confidence            999999999999999999999999999875321111  1112234567999999988888999999999999999998 8


Q ss_pred             CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      ..||......        +...             .... ......+...+..+.+++.+||+.+|.+|||++++++.|.
T Consensus       221 ~~p~~~~~~~--------~~~~-------------~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~  278 (303)
T cd05088         221 GTPYCGMTCA--------ELYE-------------KLPQ-GYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLN  278 (303)
T ss_pred             CCCcccCChH--------HHHH-------------HHhc-CCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence            8887532210        0000             0000 0000001123456889999999999999999999999999


Q ss_pred             HHHHhh
Q 044155          231 QIYRSL  236 (239)
Q Consensus       231 ~l~~~~  236 (239)
                      ++....
T Consensus       279 ~~~~~~  284 (303)
T cd05088         279 RMLEER  284 (303)
T ss_pred             HHHHhh
Confidence            877654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=1.6e-37  Score=245.22  Aligned_cols=208  Identities=20%  Similarity=0.245  Sum_probs=152.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+.+....++||||+++++|.+++...........+......++.|++.||+|||   +.+++|+|||
T Consensus        51 ~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk  127 (269)
T cd05042          51 ELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLH---QADFIHSDLA  127 (269)
T ss_pred             hCCCCCcceEEEEECCCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHH---hcCEeccccc
Confidence            3689999999999999999999999999999999998754322234567788899999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCcccccc-------CCcccccchhhhhhHHHHHhc-CC
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRT-------GVFNEKSNVFSFSVFLFELLT-GW  151 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~-------~~~~~~~Di~slG~~l~~~~~-g~  151 (239)
                      |+||+++.++.+||+|||++........ .......+++.|+|||++..       ..++.++||||||+++|+|++ |.
T Consensus       128 p~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~  207 (269)
T cd05042         128 LRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAAD  207 (269)
T ss_pred             HhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCC
Confidence            9999999999999999998764322211 11123345677999998742       346789999999999999999 66


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      .||....+...        ..         ............+......+..+.+++..|| .||.+|||+++|++.|
T Consensus       208 ~p~~~~~~~~~--------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l  267 (269)
T cd05042         208 QPYPDLSDEQV--------LK---------QVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHELL  267 (269)
T ss_pred             CCCCcCCHHHH--------HH---------HHhhccCccCCCCcccccCCHHHHHHHHHHh-cCcccccCHHHHHHHh
Confidence            67643321100        00         0000000000011112245566788999999 5999999999999986

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=3.4e-37  Score=242.22  Aligned_cols=202  Identities=22%  Similarity=0.340  Sum_probs=157.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++. ....+++|||+++++|.+++.....   ..++...+..++.|++.||+|||   +.+++|+|||
T Consensus        57 ~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~  129 (260)
T cd05070          57 KLRHDKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKDGEG---RALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLR  129 (260)
T ss_pred             hcCCCceEEEEeEEC-CCCcEEEEEecCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCc
Confidence            478999999999885 4557899999999999999976432   45789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||++++++.++|+|||.+...............++..|+|||...+..++.++|+||||+++|++++ |..||.....
T Consensus       130 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~  209 (260)
T cd05070         130 SANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNN  209 (260)
T ss_pred             cceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCH
Confidence            999999999999999999987654332222223345678999999988889999999999999999999 7777753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .                     +....... ......+...+..+.+++.+||..+|.+|||++++.+.|++
T Consensus       210 ~---------------------~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         210 R---------------------EVLEQVER-GYRMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             H---------------------HHHHHHHc-CCCCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            0                     01111100 00111122445678999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=1.2e-37  Score=251.49  Aligned_cols=194  Identities=23%  Similarity=0.319  Sum_probs=155.3

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+....++||||+++|+|.+++...     ..++...+..++.|++.||.|||   +.+++||||||
T Consensus        53 ~~hp~iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-----~~~~~~~~~~~~~qi~~al~~LH---~~~ivHrdikp  124 (316)
T cd05619          53 WEHPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQSC-----HKFDLPRATFYAAEIICGLQFLH---SKGIVYRDLKL  124 (316)
T ss_pred             cCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCH
Confidence            48999999999999999999999999999999999764     46888999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++|+||||+++|+|++|..||.....  
T Consensus       125 ~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~--  201 (316)
T cd05619         125 DNILLDTDGHIKIADFGMCKENMLGD-AKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDE--  201 (316)
T ss_pred             HHEEECCCCCEEEccCCcceECCCCC-CceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCH--
Confidence            99999999999999999986432211 122345689999999999988899999999999999999999999853221  


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH-HHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV-DVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~-ell~  227 (239)
                                         .+..........  ..+...+..+.+++.+||+.||.+||++. ++++
T Consensus       202 -------------------~~~~~~i~~~~~--~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05619         202 -------------------EELFQSIRMDNP--CYPRWLTREAKDILVKLFVREPERRLGVKGDIRQ  247 (316)
T ss_pred             -------------------HHHHHHHHhCCC--CCCccCCHHHHHHHHHHhccCHhhcCCChHHHHc
Confidence                               011111111110  01113456688999999999999999996 5643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=4e-38  Score=232.92  Aligned_cols=196  Identities=23%  Similarity=0.355  Sum_probs=162.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      .|+|||||++.+.+......++|+|+++|++|..-+-..     .-..+..+-.++.||+++|.|+|   .++|||||+|
T Consensus        66 ~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~dl~~eIV~R-----~~ySEa~aSH~~rQiLeal~yCH---~n~IvHRDvk  137 (355)
T KOG0033|consen   66 KLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR-----EFYSEADASHCIQQILEALAYCH---SNGIVHRDLK  137 (355)
T ss_pred             hcCCCcEeehhhhhcccceeEEEEecccchHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH---hcCceeccCC
Confidence            479999999999999999999999999999997655443     34567778889999999999999   9999999999


Q ss_pred             CcceeecCCC---ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEEN---VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |.|+++-+..   -+|++|||++.....  ......+.|+|.|+|||++...+++..+|||+.|+++|-++.|..||.. 
T Consensus       138 P~nllLASK~~~A~vKL~~FGvAi~l~~--g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~-  214 (355)
T KOG0033|consen  138 PENLLLASKAKGAAVKLADFGLAIEVND--GEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD-  214 (355)
T ss_pred             hhheeeeeccCCCceeecccceEEEeCC--ccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCC-
Confidence            9999986533   479999999988762  2345577899999999999999999999999999999999999988743 


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          .+...++..+..+.+.  +++-+..+++.+++|++||..||++|.|+.|.+.
T Consensus       215 --------------------~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~  266 (355)
T KOG0033|consen  215 --------------------EDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALK  266 (355)
T ss_pred             --------------------ccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhC
Confidence                                2334455555555443  3233467788999999999999999999999874

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.1e-37  Score=242.07  Aligned_cols=202  Identities=24%  Similarity=0.402  Sum_probs=158.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++.||||+++++++. ....++||||+++++|.+++...     ..+++..+..++.|++.||+|||   ..+++|+|||
T Consensus        52 ~l~h~~iv~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~  122 (257)
T cd05060          52 QLDHPCIVRLIGVCK-GEPLMLVMELAPLGPLLKYLKKR-----REIPVSDLKELAHQVAMGMAYLE---SKHFVHRDLA  122 (257)
T ss_pred             hcCCCCeeeEEEEEc-CCceEEEEEeCCCCcHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHh---hcCeeccCcc
Confidence            468999999999876 45679999999999999999865     46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCccee--ecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHIT--DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||.+...........  ....++..|+|||...+..++.++||||||+++|++++ |..||...
T Consensus       123 p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~  202 (257)
T cd05060         123 ARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEM  202 (257)
T ss_pred             cceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccC
Confidence            9999999999999999999876543322111  11223467999999988889999999999999999998 88887543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      ...                     +......... ....+...+..+.+++.+||..+|.+|||+.++++.|+++.
T Consensus       203 ~~~---------------------~~~~~~~~~~-~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         203 KGA---------------------EVIAMLESGE-RLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             CHH---------------------HHHHHHHcCC-cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence            210                     0000000000 00111234567889999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=6.6e-38  Score=254.01  Aligned_cols=193  Identities=22%  Similarity=0.281  Sum_probs=154.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++...+..++||||+++++|.+++...     ..+.......++.|++.||.|||   +.+++||||||
T Consensus        53 ~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~qi~~~L~~lH---~~giiHrDlkp  124 (325)
T cd05602          53 VKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE-----RCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKP  124 (325)
T ss_pred             CCCCCCCceeEEEEcCCeEEEEEeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCH
Confidence            68999999999999999999999999999999999765     45778888889999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||.....  
T Consensus       125 ~Nili~~~~~~kl~DfG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--  201 (325)
T cd05602         125 ENILLDSQGHIVLTDFGLCKENIEHN-GTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT--  201 (325)
T ss_pred             HHeEECCCCCEEEccCCCCcccccCC-CCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCH--
Confidence            99999999999999999986532211 123345689999999999988899999999999999999999999853221  


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                                         .+...........  .....+..+.+++.+||+.||.+||++.+.+
T Consensus       202 -------------------~~~~~~i~~~~~~--~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~  245 (325)
T cd05602         202 -------------------AEMYDNILNKPLQ--LKPNITNSARHLLEGLLQKDRTKRLGAKDDF  245 (325)
T ss_pred             -------------------HHHHHHHHhCCcC--CCCCCCHHHHHHHHHHcccCHHHCCCCCCCH
Confidence                               1111111111111  0113456788999999999999999987433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=1.3e-37  Score=251.26  Aligned_cols=193  Identities=21%  Similarity=0.298  Sum_probs=154.5

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+.+..++||||+.+++|.+++...     ..++...+..++.|++.||+|||   +++++||||||
T Consensus        53 ~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp  124 (316)
T cd05620          53 WENPFLTHLYCTFQTKEHLFFVMEFLNGGDLMFHIQDK-----GRFDLYRATFYAAEIVCGLQFLH---SKGIIYRDLKL  124 (316)
T ss_pred             cCCCCccCeeEEEEeCCEEEEEECCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCH
Confidence            48999999999999999999999999999999998765     56888999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||.....  
T Consensus       125 ~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~--  201 (316)
T cd05620         125 DNVMLDRDGHIKIADFGMCKENVFGD-NRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDE--  201 (316)
T ss_pred             HHeEECCCCCEEeCccCCCeecccCC-CceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH--
Confidence            99999999999999999876432211 123355689999999999988999999999999999999999999853221  


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH-HHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV-DVA  226 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~-ell  226 (239)
                                         .+..........  ..+...+..+.+++.+||+.||.+||++. +++
T Consensus       202 -------------------~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         202 -------------------DELFESIRVDTP--HYPRWITKESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             -------------------HHHHHHHHhCCC--CCCCCCCHHHHHHHHHHccCCHHHcCCChHHHH
Confidence                               001111110100  00112345688999999999999999974 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.6e-38  Score=229.95  Aligned_cols=195  Identities=21%  Similarity=0.343  Sum_probs=166.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      .|+||||+++|++|.+....|+++||...|++...+..+..   .++++.....++.|++.|+.|+|   .++++|||+|
T Consensus        78 ~L~hpnilrlY~~fhd~~riyLilEya~~gel~k~L~~~~~---~~f~e~~~a~Yi~q~A~Al~y~h---~k~VIhRdiK  151 (281)
T KOG0580|consen   78 HLRHPNILRLYGYFHDSKRIYLILEYAPRGELYKDLQEGRM---KRFDEQRAATYIKQLANALLYCH---LKRVIHRDIK  151 (281)
T ss_pred             ccCCccHHhhhhheeccceeEEEEEecCCchHHHHHHhccc---ccccccchhHHHHHHHHHHHHhc---cCCcccCCCC
Confidence            37999999999999999999999999999999999986544   67888999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|+|++.++.+||+|||-+...+.   ....+.+||..|.+||+..+...+...|+|++|++.||++.|.+||+...  
T Consensus       152 penlLlg~~~~lkiAdfGwsV~~p~---~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~--  226 (281)
T KOG0580|consen  152 PENLLLGSAGELKIADFGWSVHAPS---NKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS--  226 (281)
T ss_pred             HHHhccCCCCCeeccCCCceeecCC---CCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh--
Confidence            9999999999999999998876542   23567889999999999999999999999999999999999999885322  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                         ..+.+..+..-....  +...+...+++|.+|+..+|.+|.+..|+++
T Consensus       227 -------------------~~etYkrI~k~~~~~--p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~  272 (281)
T KOG0580|consen  227 -------------------HSETYKRIRKVDLKF--PSTISGGAADLISRLLVKNPIERLALTEVMD  272 (281)
T ss_pred             -------------------hHHHHHHHHHccccC--CcccChhHHHHHHHHhccCccccccHHHHhh
Confidence                               223333333322222  1466778899999999999999999999876

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=1.3e-37  Score=251.94  Aligned_cols=194  Identities=20%  Similarity=0.289  Sum_probs=156.3

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .+||||+++++++.+++..++||||+++++|.+.+...     ..+++..+..++.|++.||.|||   +++++||||||
T Consensus        53 ~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp  124 (321)
T cd05591          53 AKHPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQRS-----RKFDEPRSRFYAAEVTLALMFLH---RHGVIYRDLKL  124 (321)
T ss_pred             cCCCCccceeeEEEcCCeEEEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCH
Confidence            37999999999999999999999999999999988765     56888999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||.....  
T Consensus       125 ~Nill~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~--  201 (321)
T cd05591         125 DNILLDAEGHCKLADFGMCKEGILNG-VTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNE--  201 (321)
T ss_pred             HHeEECCCCCEEEeecccceecccCC-ccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCH--
Confidence            99999999999999999886532221 122345689999999999988899999999999999999999999864321  


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-------CHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-------SMVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-------s~~ell~  227 (239)
                                         .+....+......  .+...+..+.+++.+||+.||.+||       +++++++
T Consensus       202 -------------------~~~~~~i~~~~~~--~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~  253 (321)
T cd05591         202 -------------------DDLFESILHDDVL--YPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQ  253 (321)
T ss_pred             -------------------HHHHHHHHcCCCC--CCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhc
Confidence                               1111111111111  0112346788999999999999999       7777764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9e-38  Score=242.24  Aligned_cols=217  Identities=19%  Similarity=0.203  Sum_probs=162.1

Q ss_pred             CCCcccceeeEEEEe-----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            2 MSHNHILKLIGCCLE-----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         2 l~H~niv~l~~~~~~-----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      ++|+||+.+++++..     -+..++|+|+|+ .+|...++.+     +.++......+++|++.||.|+|   +.+++|
T Consensus        78 ~~HeNIi~l~di~~p~~~~~f~DvYiV~elMe-tDL~~iik~~-----~~L~d~H~q~f~YQiLrgLKyiH---SAnViH  148 (359)
T KOG0660|consen   78 LRHENIIGLLDIFRPPSRDKFNDVYLVFELME-TDLHQIIKSQ-----QDLTDDHAQYFLYQILRGLKYIH---SANVIH  148 (359)
T ss_pred             hcCCCcceEEeecccccccccceeEEehhHHh-hHHHHHHHcC-----ccccHHHHHHHHHHHHHhcchhh---cccccc
Confidence            689999999999875     246799999996 8999999886     55999999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCC-cceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |||||.|++++.+..+||+|||+++...... ....+....|.+|+|||.+.. ..|+...||||.|||+.||++|+..|
T Consensus       149 RDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplF  228 (359)
T KOG0660|consen  149 RDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLF  228 (359)
T ss_pred             cccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCC
Confidence            9999999999999999999999998875431 112356678999999998765 56999999999999999999999998


Q ss_pred             cccccccccccc------chhhhhhhhhccchhhhhhhhhhcCCCc--HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          155 DLVKDVHDLVCP------FSEYLKNCFEDNRFTEIVDHIVVEDVSS--IEKEQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       155 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                      .+....+.....      -.+.......+......+.+.-..+..+  ......++...+|+.+||..||.+|+|++|++
T Consensus       229 pG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL  308 (359)
T KOG0660|consen  229 PGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEAL  308 (359)
T ss_pred             CCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHh
Confidence            765543322111      1111111111111111111111111111  11125567788999999999999999999988


Q ss_pred             H
Q 044155          227 K  227 (239)
Q Consensus       227 ~  227 (239)
                      +
T Consensus       309 ~  309 (359)
T KOG0660|consen  309 A  309 (359)
T ss_pred             c
Confidence            6

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=3.5e-37  Score=247.84  Aligned_cols=211  Identities=22%  Similarity=0.355  Sum_probs=162.8

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +||||+++++++...+..++||||+.+++|.+++......           ....++...++.++.|++.||+|||   +
T Consensus        82 ~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~  158 (307)
T cd05098          82 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA---S  158 (307)
T ss_pred             CCCCEeeEEEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---H
Confidence            7999999999999999999999999999999999764321           0134788899999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-  149 (239)
                      .+++|+||||+||+++.++.++|+|||.+......... ......+++.|+|||++.+..++.++|+||||+++|+|++ 
T Consensus       159 ~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~  238 (307)
T cd05098         159 KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTL  238 (307)
T ss_pred             CCcccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999998654322111 1112234568999999988889999999999999999998 


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||....                     ..+......... ....+...+..+.+++.+||..+|.+|||+.++++.|
T Consensus       239 g~~p~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l  296 (307)
T cd05098         239 GGSPYPGVP---------------------VEELFKLLKEGH-RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  296 (307)
T ss_pred             CCCCCCcCC---------------------HHHHHHHHHcCC-CCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHH
Confidence            767764221                     001111100111 0011123456788999999999999999999999999


Q ss_pred             HHHHHhhcC
Q 044155          230 RQIYRSLSC  238 (239)
Q Consensus       230 ~~l~~~~~~  238 (239)
                      .++....++
T Consensus       297 ~~~~~~~~~  305 (307)
T cd05098         297 DRILALTSN  305 (307)
T ss_pred             HHHHHHhhc
Confidence            998876543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=3.5e-37  Score=241.40  Aligned_cols=198  Identities=21%  Similarity=0.330  Sum_probs=160.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++.....   ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        55 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~~l~~al~~lH---~~~i~h~dl~  128 (256)
T cd08529          55 KLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRG---RPLPEDQVWRFFIQILLGLAHLH---SKKILHRDIK  128 (256)
T ss_pred             hcCCCCeehheeeeccCCEEEEEEEeCCCCcHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            47899999999999999999999999999999999987533   56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++........ ......+++.|+|||+..+..++.++|+||||+++++|++|..||..... 
T Consensus       129 ~~nili~~~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-  206 (256)
T cd08529         129 SLNLFLDAYDNVKIGDLGVAKLLSDNTN-FANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQ-  206 (256)
T ss_pred             cceEEEeCCCCEEEcccccceeccCccc-hhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH-
Confidence            9999999999999999998876543321 12334578899999999988899999999999999999999998853321 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          .+............ .....+..+.+++.+||+.+|++||++.++++
T Consensus       207 --------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  252 (256)
T cd08529         207 --------------------GALILKIIRGVFPP-VSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLR  252 (256)
T ss_pred             --------------------HHHHHHHHcCCCCC-CccccCHHHHHHHHHHccCCcccCcCHHHHhh
Confidence                                01111111111111 11245677899999999999999999999986

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=2.6e-37  Score=244.05  Aligned_cols=209  Identities=22%  Similarity=0.244  Sum_probs=153.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...........+....+.++.|++.|+.|||   +.+++|+|||
T Consensus        51 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dlk  127 (269)
T cd05087          51 SLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLH---KNNFIHSDLA  127 (269)
T ss_pred             hCCCCCEeeEEEEEcCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCEeccccC
Confidence            4789999999999998888999999999999999997643221134567788889999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcce-eecccccccccCccccccC-------CcccccchhhhhhHHHHHhc-CC
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHI-TDTVMGTLGYCAPEYMRTG-------VFNEKSNVFSFSVFLFELLT-GW  151 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~-------~~~~~~Di~slG~~l~~~~~-g~  151 (239)
                      |+||+++.++.++|+|||.+.......... .....++..|+|||++...       .++.++|+||||+++|+|++ |.
T Consensus       128 p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~  207 (269)
T cd05087         128 LRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGS  207 (269)
T ss_pred             cceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCC
Confidence            999999999999999999986543222111 1234467889999988532       35789999999999999996 98


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      .||..........                 ..+.........+......+..+.+++..|| .+|.+|||++||+..|.
T Consensus       208 ~p~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         208 QPYRHLSDEQVLT-----------------YTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             CCCCCCChHHHHH-----------------HHhhcccCCCCCCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            8885432111000                 0000000000001111123456788999999 58999999999998764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=5.3e-37  Score=242.41  Aligned_cols=205  Identities=24%  Similarity=0.324  Sum_probs=160.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++.||||+++++++.+ ...++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        63 ~~~h~~i~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~lH---~~~~~H~dl~  134 (270)
T cd05056          63 QFDHPHIVKLIGVITE-NPVWIVMELAPLGELRSYLQVNK----YSLDLASLILYSYQLSTALAYLE---SKRFVHRDIA  134 (270)
T ss_pred             hCCCCchhceeEEEcC-CCcEEEEEcCCCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccC
Confidence            4689999999999875 45689999999999999997642    45789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++++|||++...............++..|+|||.+....++.++||||||+++|++++ |..||.....
T Consensus       135 p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~  214 (270)
T cd05056         135 ARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKN  214 (270)
T ss_pred             hheEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCH
Confidence            999999999999999999987654332222223334568999999988889999999999999999886 9888754321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ..                     ......... ....+...+..+.+++.+||..+|.+|||+.++++.|.++.++
T Consensus       215 ~~---------------------~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~~  268 (270)
T cd05056         215 ND---------------------VIGRIENGE-RLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQE  268 (270)
T ss_pred             HH---------------------HHHHHHcCC-cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            10                     000000000 0001123456789999999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=4.1e-37  Score=242.58  Aligned_cols=209  Identities=21%  Similarity=0.276  Sum_probs=164.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..++..+++|||+++++|.+++...... ...+++.....++.|++.||.|||   +.+++|+|||
T Consensus        58 ~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~  133 (267)
T cd08229          58 QLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQ-KRLIPEKTVWKYFVQLCSALEHMH---SRRVMHRDIK  133 (267)
T ss_pred             HccCCchhhhhheeEeCCeEEEEEEecCCCCHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            368999999999999999999999999999999988743221 146789999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++++|||++........ ......++..|+|||.+.+..++.++|+||||+++|+|++|..||......
T Consensus       134 p~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~  212 (267)
T cd08229         134 PANVFITATGVVKLGDLGLGRFFSSKTT-AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN  212 (267)
T ss_pred             HHHEEEcCCCCEEECcchhhhccccCCc-ccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccch
Confidence            9999999999999999998766533221 122345788999999998888999999999999999999999987532210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                                         ..............+......+..+.+++.+||..||.+|||+.+|++.++++.
T Consensus       213 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         213 -------------------LYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             -------------------HHHHhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence                               000111111111111112245678999999999999999999999999998874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.5e-37  Score=251.13  Aligned_cols=193  Identities=23%  Similarity=0.320  Sum_probs=155.8

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+.+..++||||+++++|.+++...     ..+++..+..++.|++.||+|||   +.+++|+||||+
T Consensus        54 ~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~  125 (318)
T cd05570          54 KHPFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRS-----GRFDEPRARFYAAEIVLGLQFLH---ERGIIYRDLKLD  125 (318)
T ss_pred             CCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEccCCCHH
Confidence            6999999999999999999999999999999988765     46889999999999999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      ||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++|+||||+++|+|++|..||......  
T Consensus       126 Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~--  202 (318)
T cd05570         126 NVLLDSEGHIKIADFGMCKEGILGG-VTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDED--  202 (318)
T ss_pred             HeEECCCCcEEecccCCCeecCcCC-CcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHH--
Confidence            9999999999999999886432211 1223446889999999999989999999999999999999999998543210  


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH-----HHHHH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM-----VDVAK  227 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~-----~ell~  227 (239)
                                         ............  .+...+..+.++|.+||..||.+|||+     .+++.
T Consensus       203 -------------------~~~~~i~~~~~~--~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         203 -------------------ELFQSILEDEVR--YPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             -------------------HHHHHHHcCCCC--CCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence                               111111111110  112345678899999999999999999     77764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=2.7e-37  Score=245.02  Aligned_cols=205  Identities=20%  Similarity=0.345  Sum_probs=156.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCC-----CCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPH-----FEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++..+...++||||+++++|.+++.......     ...++...+..++.|++.||.|||   +.+++
T Consensus        65 ~l~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~v  141 (277)
T cd05062          65 EFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN---ANKFV  141 (277)
T ss_pred             hCCCCCeeeEEEEEcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCcc
Confidence            3689999999999999999999999999999999987642210     123567888899999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCC
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDV  153 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p  153 (239)
                      |+||||+||+++.++.++|+|||++......... ......+++.|+|||++.+..++.++|+||||+++|++++ |..|
T Consensus       142 H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p  221 (277)
T cd05062         142 HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP  221 (277)
T ss_pred             cCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCC
Confidence            9999999999999999999999998654332211 1122345678999999988889999999999999999999 5677


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      |.....                     .+........... ..+...+..+.+++.+||+.||.+|||+.|+++.|+
T Consensus       222 ~~~~~~---------------------~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~  276 (277)
T cd05062         222 YQGMSN---------------------EQVLRFVMEGGLL-DKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK  276 (277)
T ss_pred             CCCCCH---------------------HHHHHHHHcCCcC-CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence            643221                     0111111111100 001234567899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.8e-37  Score=246.43  Aligned_cols=203  Identities=18%  Similarity=0.280  Sum_probs=158.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++.+++..+...++||||+++++|.+.+..... ....+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        49 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~-~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk  124 (280)
T cd05608          49 KVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDE-ENPGFPEPRACFYTAQIISGLEHLH---QRRIIYRDLK  124 (280)
T ss_pred             hCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCHHHHHHhccc-cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            47899999999999999999999999999999887754221 1146889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++........ ......|++.|+|||++.+..++.++|+||||+++|+|++|..||......
T Consensus       125 p~Nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~  203 (280)
T cd05608         125 PENVLLDNDGNVRISDLGLAVELKDGQS-KTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEK  203 (280)
T ss_pred             HHHEEECCCCCEEEeeCccceecCCCCc-cccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcc
Confidence            9999999999999999999866533221 223456889999999999989999999999999999999999998643211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                      ..                 .............  ..+...+..+.+++.+||+.||++||     +++++++
T Consensus       204 ~~-----------------~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~  256 (280)
T cd05608         204 VE-----------------NKELKQRILNDSV--TYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRT  256 (280)
T ss_pred             hh-----------------HHHHHHhhcccCC--CCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhc
Confidence            00                 0011111111111  11124567789999999999999999     6677775

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.6e-37  Score=241.01  Aligned_cols=220  Identities=18%  Similarity=0.203  Sum_probs=163.3

Q ss_pred             CCCCcc-cceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC
Q 044155            1 QMSHNH-ILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP   73 (239)
Q Consensus         1 ~l~H~n-iv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~   73 (239)
                      +|+|+| |+.+++++.+.+      ..++|+||.+ -+|.+++....... ..++...++.++.||+.||+|||   +++
T Consensus        66 ~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d-~DL~~ymd~~~~~~-~g~~~~~ik~~m~Qll~gl~~~H---~~~  140 (323)
T KOG0594|consen   66 RLSHANHIVRLHDVIHTSNNHRGIGKLYLVFEFLD-RDLKKYMDSLPKKP-QGLPPRLIKSFMRQLLRGLAFLH---SHG  140 (323)
T ss_pred             HhCCCcceEEEEeeeeecccccccceEEEEEEeec-ccHHHHHHhccccc-cCCCHHHHHHHHHHHHHHHHHHH---hCC
Confidence            478999 999999998877      7789999997 89999999865321 34677899999999999999999   999


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCC
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      |+||||||.|+|++.+|.+||+|||+++...-.. ..-....+|.+|+|||++.+. .|+...||||+||++.||++++.
T Consensus       141 IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~-~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~  219 (323)
T KOG0594|consen  141 ILHRDLKPQNLLISSSGVLKLADFGLARAFSIPM-RTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRP  219 (323)
T ss_pred             eecccCCcceEEECCCCcEeeeccchHHHhcCCc-ccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCC
Confidence            9999999999999999999999999998653221 123455689999999999987 69999999999999999999999


Q ss_pred             Ccccccccccccccchhhhhhhhhccchhhhhhhhh-----hcCC-CcHHH---HHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIV-----VEDV-SSIEK---EQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~---~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      .|.+..+.......|.....  .....|+....-..     .... .....   ........+++..|++++|.+|.||+
T Consensus       220 LFpG~se~~ql~~If~~lGt--P~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~  297 (323)
T KOG0594|consen  220 LFPGDSEIDQLFRIFRLLGT--PNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAK  297 (323)
T ss_pred             CCCCCcHHHHHHHHHHHcCC--CCccCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHH
Confidence            88876663332222111100  01122222221110     0000 00011   12224678999999999999999999


Q ss_pred             HHHHH
Q 044155          224 DVAKK  228 (239)
Q Consensus       224 ell~~  228 (239)
                      .+++.
T Consensus       298 ~al~h  302 (323)
T KOG0594|consen  298 GALTH  302 (323)
T ss_pred             HHhcC
Confidence            99874

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=3.6e-37  Score=241.52  Aligned_cols=200  Identities=26%  Similarity=0.395  Sum_probs=156.3

Q ss_pred             CCCCcccceeeEEEE-eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCL-ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~-~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++|+||+++++++. .+...++++||+++++|.++++....   ..+++..+..++.|++.||+|||   +++++|+||
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl  128 (256)
T cd05082          55 QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLE---ANNFVHRDL  128 (256)
T ss_pred             hCCCCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCEecccc
Confidence            478999999999765 44568899999999999999976532   45788999999999999999999   999999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      ||+||+++.++.++++|||++.......    ....++..|+|||++....++.++|+||||+++|+|++ |..||....
T Consensus       129 kp~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~  204 (256)
T cd05082         129 AARNVLVSEDNVAKVSDFGLTKEASSTQ----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP  204 (256)
T ss_pred             chheEEEcCCCcEEecCCccceeccccC----CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999886543221    12334567999999988889999999999999999997 877764221


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                                           ..+........ .........+..+.+++.+||+.+|.+|||+.++++.|+++
T Consensus       205 ---------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         205 ---------------------LKDVVPRVEKG-YKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             ---------------------HHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence                                 00111111000 01111124456789999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=9.2e-37  Score=240.40  Aligned_cols=209  Identities=20%  Similarity=0.284  Sum_probs=164.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++...+..++||||+++++|.+++...... ...++...+..++.+++.||.|||   +.+++|+||+
T Consensus        58 ~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~  133 (267)
T cd08224          58 QLDHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQ-KRLIPERTIWKYFVQLCSALEHMH---SKRIMHRDIK  133 (267)
T ss_pred             hCCCCCeeeeeeeeecCCeEEEEEecCCCCCHHHHHHHhccc-CCCcCHHHHHHHHHHHHHHHHHHH---hCCEecCCcC
Confidence            468999999999999999999999999999999988653211 145789999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++........ ......++..|+|||.+.+..++.++|+||||+++|++++|..||..... 
T Consensus       134 p~nil~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-  211 (267)
T cd08224         134 PANVFITATGVVKLGDLGLGRFFSSKTT-AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM-  211 (267)
T ss_pred             hhhEEECCCCcEEEeccceeeeccCCCc-ccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCc-
Confidence            9999999999999999999865533221 12234578889999999888899999999999999999999988743220 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                                        ...+...........+......+..+.+++.+||..+|++|||+.++++.|+++.
T Consensus       212 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         212 ------------------NLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             ------------------cHHHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence                              0011111111111111111245667899999999999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=2e-37  Score=256.77  Aligned_cols=208  Identities=17%  Similarity=0.337  Sum_probs=160.2

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC----------------------------------------
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP----------------------------------------   42 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~----------------------------------------   42 (239)
                      .||||+++++++.+....++||||+++|+|.+++......                                        
T Consensus        99 ~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (400)
T cd05105          99 PHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYM  178 (400)
T ss_pred             CCCCeeeEEEEEccCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhccccccc
Confidence            4999999999999999999999999999999988653210                                        


Q ss_pred             ---------------------------------------------------CCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155           43 ---------------------------------------------------HFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus        43 ---------------------------------------------------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                                                                         ....+++..+..++.|++.||.|||   .
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~  255 (400)
T cd05105         179 DMKQADTTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLA---S  255 (400)
T ss_pred             ccccccccccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence                                                               0024677888899999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-  149 (239)
                      .+++|+||||+||+++.++.++|+|||++........ .......+++.|+|||.+.+..++.++||||||+++|+|++ 
T Consensus       256 ~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~  335 (400)
T cd05105         256 KNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSL  335 (400)
T ss_pred             CCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999875432211 11223446778999999988889999999999999999997 


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||.......                 .....    +........+...+..+.+++.+||..||++|||+.+|.+.|
T Consensus       336 g~~P~~~~~~~~-----------------~~~~~----~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l  394 (400)
T cd05105         336 GGTPYPGMIVDS-----------------TFYNK----IKSGYRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIV  394 (400)
T ss_pred             CCCCCcccchhH-----------------HHHHH----HhcCCCCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHH
Confidence            878875321100                 00000    001111111124567789999999999999999999999999


Q ss_pred             HHHHH
Q 044155          230 RQIYR  234 (239)
Q Consensus       230 ~~l~~  234 (239)
                      +++..
T Consensus       395 ~~l~~  399 (400)
T cd05105         395 ESLLP  399 (400)
T ss_pred             HHHcC
Confidence            98754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=4.4e-38  Score=254.29  Aligned_cols=192  Identities=24%  Similarity=0.291  Sum_probs=155.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+++..++||||+++++|.+++...     ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        54 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk  125 (318)
T cd05582          54 EVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE-----VMFTEEDVKFYLAELALALDHLH---SLGIIYRDLK  125 (318)
T ss_pred             hCCCCCcccEEEEEEcCCEEEEEEcCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCC
Confidence            478999999999999999999999999999999999764     56889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++....... .......|++.|+|||.+.+..++.++||||||+++|+|++|+.||..... 
T Consensus       126 p~Nil~~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~-  203 (318)
T cd05582         126 PENILLDEEGHIKLTDFGLSKESIDHE-KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDR-  203 (318)
T ss_pred             HHHeEECCCCcEEEeeccCCcccCCCC-CceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCH-
Confidence            999999999999999999986543221 123345689999999999988889999999999999999999999853221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD  224 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~e  224 (239)
                                          .+...........  .+...+..+.+++.+||+.||.+|||+.+
T Consensus       204 --------------------~~~~~~i~~~~~~--~p~~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         204 --------------------KETMTMILKAKLG--MPQFLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             --------------------HHHHHHHHcCCCC--CCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence                                0111111111110  11234567889999999999999999554

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=7.2e-37  Score=245.70  Aligned_cols=208  Identities=20%  Similarity=0.348  Sum_probs=160.9

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +||||+++++++......++||||+.+++|.+++......           ....++...+..++.|++.||.|||   +
T Consensus        79 ~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~  155 (304)
T cd05101          79 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA---S  155 (304)
T ss_pred             cCCCchheeEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH---H
Confidence            7999999999999999999999999999999999764221           0135778889999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-  149 (239)
                      ++++|+||||+||+++.++.++|+|||.+......... ......+++.|+|||++.+..++.++||||||+++|++++ 
T Consensus       156 ~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~  235 (304)
T cd05101         156 QKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTL  235 (304)
T ss_pred             CCeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcC
Confidence            99999999999999999999999999998765332211 1222345678999999988889999999999999999998 


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||....                     ..+......... ....+...+..+.+++.+||..+|.+|||+.++++.|
T Consensus       236 g~~p~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  293 (304)
T cd05101         236 GGSPYPGIP---------------------VEELFKLLKEGH-RMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDL  293 (304)
T ss_pred             CCCCcccCC---------------------HHHHHHHHHcCC-cCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHH
Confidence            666653221                     111111111100 0001123456788999999999999999999999999


Q ss_pred             HHHHHh
Q 044155          230 RQIYRS  235 (239)
Q Consensus       230 ~~l~~~  235 (239)
                      +++..-
T Consensus       294 ~~~~~~  299 (304)
T cd05101         294 DRILTL  299 (304)
T ss_pred             HHHHHh
Confidence            987653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=5.3e-37  Score=242.06  Aligned_cols=203  Identities=19%  Similarity=0.281  Sum_probs=160.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+++..++||||+++++|.+++....    ..++......++.|++.||++||   +.+++|+|||
T Consensus        61 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH---~~~i~h~dlk  133 (267)
T cd05066          61 QFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHD----GQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLA  133 (267)
T ss_pred             hCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCEeehhhc
Confidence            4789999999999999999999999999999999997643    45788999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCccee--ecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHIT--DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.++++|||.+...........  ....++..|+|||.+.+..++.++|+||||+++|++++ |..||...
T Consensus       134 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~  213 (267)
T cd05066         134 ARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEM  213 (267)
T ss_pred             hhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccC
Confidence            9999999999999999999876543322111  11223567999999988889999999999999999886 88887543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      ...                     +........ .........+..+.+++.+||+.+|.+|||+.++++.|+++
T Consensus       214 ~~~---------------------~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         214 SNQ---------------------DVIKAIEEG-YRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             CHH---------------------HHHHHHhCC-CcCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            210                     000000000 00011113456789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=1.2e-37  Score=256.39  Aligned_cols=197  Identities=18%  Similarity=0.247  Sum_probs=155.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++...++||||+++|+|.+++..      ..++...+..++.|++.||.|||   +++++|||||
T Consensus        99 ~~~h~~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~------~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLk  169 (370)
T cd05596          99 HANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMSN------YDIPEKWARFYTAEVVLALDAIH---SMGFIHRDVK  169 (370)
T ss_pred             hCCCCCcceEEEEEecCCEEEEEEcCCCCCcHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence            36899999999999999999999999999999999865      34778889999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC----CcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG----VFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~----~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+|||++.++.+||+|||++...............|++.|+|||++.+.    .++.++|+|||||++|+|++|..||..
T Consensus       170 p~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~  249 (370)
T cd05596         170 PDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA  249 (370)
T ss_pred             HHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCC
Confidence            9999999999999999999876533222222345689999999998653    378899999999999999999999864


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcC--CCcHHHHHHHHHHHHHHhhhcCCCCCC--CCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED--VSSIEKEQQLHASAQVTFECIKDSPAD--RPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~ell~  227 (239)
                      ...                     ......+....  ...+.....+..+.++|.+||+.+|.+  |+|++++++
T Consensus       250 ~~~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~  303 (370)
T cd05596         250 DSL---------------------VGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKS  303 (370)
T ss_pred             CCH---------------------HHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhc
Confidence            221                     01111111100  000111134577889999999999988  999999975

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.1e-37  Score=240.63  Aligned_cols=199  Identities=25%  Similarity=0.413  Sum_probs=159.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++.+....++||||+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        56 ~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~  129 (256)
T cd05039          56 TLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGR---AVITLAQQLGFALDVCEGMEYLE---EKNFVHRDLA  129 (256)
T ss_pred             hcCCcceeeeEEEEcCCCCeEEEEEecCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCccchhcc
Confidence            46899999999999988899999999999999999976532   36889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+........    ....+..|+|||.+....++.++|+||||++++++++ |..||.....
T Consensus       130 p~Nili~~~~~~~l~d~g~~~~~~~~~~----~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~  205 (256)
T cd05039         130 ARNVLVSEDLVAKVSDFGLAKEASQGQD----SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL  205 (256)
T ss_pred             cceEEEeCCCCEEEcccccccccccccc----cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            9999999999999999999876532211    2334567999999988889999999999999999997 8888743221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                                           .+...... .......+...++.+.+++.+||..+|.+|||++++++.|++
T Consensus       206 ---------------------~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  255 (256)
T cd05039         206 ---------------------KDVVPHVE-KGYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLAL  255 (256)
T ss_pred             ---------------------HHHHHHHh-cCCCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence                                 00110000 000111112345778999999999999999999999999975

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=5.8e-37  Score=241.30  Aligned_cols=193  Identities=24%  Similarity=0.352  Sum_probs=149.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++||||+++++|..++....    ..++...+..++.|++.||+|||   +.+++|+|||
T Consensus        60 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlk  132 (262)
T cd05077          60 QVSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLFMHRKS----DVLTTPWKFKVAKQLASALSYLE---DKDLVHGNVC  132 (262)
T ss_pred             hCCCCCEeeEEEEEecCCCCEEEEecccCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHhh---hCCeECCCCC
Confidence            4789999999999999889999999999999988886542    45888999999999999999999   9999999999


Q ss_pred             CcceeecCCCc-------eeEcccccccccCCCCcceeecccccccccCccccc-cCCcccccchhhhhhHHHHHh-cCC
Q 044155           81 TSCILFNEENV-------AKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-TGVFNEKSNVFSFSVFLFELL-TGW  151 (239)
Q Consensus        81 ~~nil~~~~~~-------~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~~l~~~~-~g~  151 (239)
                      |+||+++.++.       ++++|||.+......     ....++..|+|||.+. +..++.++||||||+++|+|+ +|.
T Consensus       133 p~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~  207 (262)
T cd05077         133 TKNILLAREGIDGECGPFIKLSDPGIPITVLSR-----QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGE  207 (262)
T ss_pred             cccEEEecCCccCCCCceeEeCCCCCCccccCc-----ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCC
Confidence            99999987664       899999987554221     2334678899999886 456889999999999999997 576


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      .|+......        +. .. +..        ... ...     ...+..+.+++.+||+.||.+||++.++++.+
T Consensus       208 ~p~~~~~~~--------~~-~~-~~~--------~~~-~~~-----~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         208 IPLKDKTLA--------EK-ER-FYE--------GQC-MLV-----TPSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             CCCCCcchh--------HH-HH-HHh--------cCc-cCC-----CCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence            665432100        00 00 000        000 000     11235688999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=5.3e-37  Score=244.21  Aligned_cols=217  Identities=24%  Similarity=0.346  Sum_probs=159.9

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++...  ...++||||+++++|.+++.+..    ..+++..+..++.|++.||+|||   +++++|+|
T Consensus        62 ~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~----~~~~~~~~~~i~~~i~~aL~~lH---~~gi~H~d  134 (284)
T cd05079          62 NLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNK----NKINLKQQLKYAVQICKGMDYLG---SRQYVHRD  134 (284)
T ss_pred             hCCCCCeeeeeeEEecCCCCceEEEEEccCCCCHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecc
Confidence            47899999999998865  56789999999999999986542    45789999999999999999999   99999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||+||+++.++.++|+|||++........  .......++..|+|||.+.+..++.++||||||+++|++++++.|...
T Consensus       135 lkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~  214 (284)
T cd05079         135 LAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESS  214 (284)
T ss_pred             cchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCcc
Confidence            999999999999999999999876543221  112234567789999999888899999999999999999998765321


Q ss_pred             cc-ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          157 VK-DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       157 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      .. .......+.       ............. ............+..+.+++.+||+.+|.+|||++++++.|+++
T Consensus       215 ~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         215 PMTLFLKMIGPT-------HGQMTVTRLVRVL-EEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             ccchhhhhcccc-------cccccHHHHHHHH-HcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            11 000000000       0000001111111 11111111123567799999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.6e-38  Score=256.85  Aligned_cols=197  Identities=20%  Similarity=0.272  Sum_probs=157.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+++..++||||+++++|.+++...     ..++...+..++.|++.||.|||   ..+++|+|||
T Consensus        57 ~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~l~~~~~~~i~~qi~~aL~~LH---~~giiH~Dlk  128 (350)
T cd05573          57 DADSPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRK-----DVFPEETARFYIAELVLALDSVH---KLGFIHRDIK  128 (350)
T ss_pred             hcCCCCccchhhheecCCeEEEEEcCCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence            368999999999999999999999999999999999865     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC----------------------------cceeecccccccccCccccccCCcc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE----------------------------THITDTVMGTLGYCAPEYMRTGVFN  132 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~  132 (239)
                      |+||+++.++.++|+|||++.......                            ........|++.|+|||++.+..++
T Consensus       129 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  208 (350)
T cd05573         129 PDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYG  208 (350)
T ss_pred             HHHeEECCCCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCC
Confidence            999999999999999999987553322                            0122345689999999999998999


Q ss_pred             cccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhh--cCCCcHHHHHHHHHHHHHHhh
Q 044155          133 EKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVV--EDVSSIEKEQQLHASAQVTFE  210 (239)
Q Consensus       133 ~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~  210 (239)
                      .++|||||||++|+|++|..||......                     .....+..  .....+.....++.+.++|.+
T Consensus       209 ~~~DiwSlG~il~ell~g~~Pf~~~~~~---------------------~~~~~i~~~~~~~~~p~~~~~~~~~~~li~~  267 (350)
T cd05573         209 LECDWWSLGVILYEMLYGFPPFYSDTLQ---------------------ETYNKIINWKESLRFPPDPPVSPEAIDLICR  267 (350)
T ss_pred             CceeeEecchhhhhhccCCCCCCCCCHH---------------------HHHHHHhccCCcccCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999998643210                     00000100  000000011246778899999


Q ss_pred             hcCCCCCCCCC-HHHHHH
Q 044155          211 CIKDSPADRPS-MVDVAK  227 (239)
Q Consensus       211 cl~~dp~~Rps-~~ell~  227 (239)
                      |+. ||.+||+ ++++++
T Consensus       268 ll~-dp~~R~~s~~~ll~  284 (350)
T cd05573         268 LLC-DPEDRLGSFEEIKS  284 (350)
T ss_pred             Hcc-ChhhcCCCHHHHhc
Confidence            997 9999999 999986

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=3.5e-37  Score=249.94  Aligned_cols=225  Identities=18%  Similarity=0.191  Sum_probs=158.0

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++..++..++||||+++++|.+++.....   ..+++..++.++.|++.||+|||   +.+++|+||||
T Consensus        56 l~hpniv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~---~~l~~~~~~~i~~qi~~~L~~LH---~~~iiH~dlkp  129 (327)
T cd08227          56 FNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFM---DGMSELAIAYILQGVLKALDYIH---HMGYVHRSVKA  129 (327)
T ss_pred             cCCCCeeeEEEEEEECCEEEEEEeccCCCcHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCh
Confidence            6899999999999999999999999999999999976432   45889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCc------ceeecccccccccCcccccc--CCcccccchhhhhhHHHHHhcCCCC
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRT--GVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      +||+++.++.++++||+..........      .......++..|+|||++.+  ..++.++||||||+++|++++|..|
T Consensus       130 ~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~p  209 (327)
T cd08227         130 SHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVP  209 (327)
T ss_pred             hhEEEecCCcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCC
Confidence            999999999999999986543221110      01122346678999999876  4588999999999999999999999


Q ss_pred             cccccccccccc----cch----------hhhhhhh-hccchhhhhh--------hhhhcCCCcHHHHHHHHHHHHHHhh
Q 044155          154 SDLVKDVHDLVC----PFS----------EYLKNCF-EDNRFTEIVD--------HIVVEDVSSIEKEQQLHASAQVTFE  210 (239)
Q Consensus       154 ~~~~~~~~~~~~----~~~----------~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~li~~  210 (239)
                      |...........    ...          +...... ..........        ...............++.+.+++.+
T Consensus       210 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  289 (327)
T cd08227         210 FKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQ  289 (327)
T ss_pred             CCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHH
Confidence            975332110000    000          0000000 0000000000        0000000011122456788999999


Q ss_pred             hcCCCCCCCCCHHHHHH--HHHHH
Q 044155          211 CIKDSPADRPSMVDVAK--KLRQI  232 (239)
Q Consensus       211 cl~~dp~~Rps~~ell~--~L~~l  232 (239)
                      ||+.||++|||++|+++  +++++
T Consensus       290 ~l~~dP~~Rpt~~ell~~p~f~~~  313 (327)
T cd08227         290 CLQRNPDARPSASTLLNHSFFKQI  313 (327)
T ss_pred             HHhhCchhcCCHHHHhcChhhhhc
Confidence            99999999999999987  45444

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=8.2e-37  Score=246.46  Aligned_cols=210  Identities=22%  Similarity=0.368  Sum_probs=161.7

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +||||+++++++......+++|||+++++|.+++......           ....++...+..++.|++.||.|||   +
T Consensus        76 ~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~  152 (314)
T cd05099          76 KHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE---S  152 (314)
T ss_pred             CCCCeeeEEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH---H
Confidence            6999999999999888899999999999999999764210           1135788899999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-  149 (239)
                      ++++|+||||+||+++.++.++|+|||.++........ ......++..|+|||++.+..++.++||||||+++|++++ 
T Consensus       153 ~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~  232 (314)
T cd05099         153 RRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTL  232 (314)
T ss_pred             CCeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhC
Confidence            99999999999999999999999999998765322111 1112234567999999988889999999999999999999 


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||.....                     .+.......... ...+...+.++.+++.+||..+|++|||+.++++.|
T Consensus       233 g~~p~~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l  290 (314)
T cd05099         233 GGSPYPGIPV---------------------EELFKLLREGHR-MDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEAL  290 (314)
T ss_pred             CCCCCCCCCH---------------------HHHHHHHHcCCC-CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            7777643221                     001111101100 000113345788999999999999999999999999


Q ss_pred             HHHHHhhc
Q 044155          230 RQIYRSLS  237 (239)
Q Consensus       230 ~~l~~~~~  237 (239)
                      .++...++
T Consensus       291 ~~~~~~~~  298 (314)
T cd05099         291 DKVLAAVS  298 (314)
T ss_pred             HHHHHHhc
Confidence            99887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=7.6e-37  Score=240.38  Aligned_cols=205  Identities=24%  Similarity=0.396  Sum_probs=155.4

Q ss_pred             CCCCcccceeeEEEE-eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCL-ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~-~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++||||+++++++. .++..++++||+.+++|.+++....    ..........++.|++.||.|||   +.+++|+||
T Consensus        52 ~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl  124 (262)
T cd05058          52 DFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSET----HNPTVKDLIGFGLQVAKGMEYLA---SKKFVHRDL  124 (262)
T ss_pred             cCCCCCcceEEEEeecCCCCcEEEEecCCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCcccccc
Confidence            478999999999876 4556789999999999999997642    34567778889999999999999   899999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCc---ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCC-Ccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGET---HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWD-VSD  155 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~-p~~  155 (239)
                      ||+||+++.++.++|+|||++........   .......++..|+|||.+.+..++.++||||||+++|+|++|.. ||.
T Consensus       125 k~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~  204 (262)
T cd05058         125 AARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  204 (262)
T ss_pred             CcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999999999865422111   01112235678999999988889999999999999999999654 443


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      ....                     .+.......... ...+...+..+.+++.+||..+|++||++.+++..|+++..
T Consensus       205 ~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~~  261 (262)
T cd05058         205 DVDS---------------------FDITVYLLQGRR-LLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIFS  261 (262)
T ss_pred             CCCH---------------------HHHHHHHhcCCC-CCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHhc
Confidence            2110                     011111111110 01111335678899999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=5.1e-37  Score=240.73  Aligned_cols=202  Identities=26%  Similarity=0.458  Sum_probs=159.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.. ...++|+||+++++|.+.+.....   ..+++.....++.|++.||+|||   +.+++|+|||
T Consensus        52 ~l~h~~iv~~~~~~~~-~~~~~v~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~di~  124 (257)
T cd05040          52 SLDHENLIRLYGVVLT-HPLMMVTELAPLGSLLDRLRKDAL---GHFLISTLCDYAVQIANGMRYLE---SKRFIHRDLA  124 (257)
T ss_pred             hcCCCCccceeEEEcC-CeEEEEEEecCCCcHHHHHHhccc---ccCcHHHHHHHHHHHHHHHHHHH---hCCccccccC
Confidence            4789999999999988 888999999999999999987532   35789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++.........  ......++..|+|||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       125 p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  204 (257)
T cd05040         125 ARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGL  204 (257)
T ss_pred             cccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999998765432211  1223456788999999988889999999999999999998 98887532


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      ...                     +..............+...+..+.+++.+||..+|++|||+.++++.|.
T Consensus       205 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         205 SGS---------------------QILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             CHH---------------------HHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence            210                     0000000000000011234567889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=8.3e-37  Score=242.93  Aligned_cols=206  Identities=22%  Similarity=0.367  Sum_probs=158.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC------------CCCCcCCHHHHHHHHHHHHHHHhHHhh
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ------------PHFEPLLLKHRLKIAMDIVHALAYLHF   68 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~------------~~~~~~~~~~~~~~~~~i~~~l~~LH~   68 (239)
                      +++||||+++++++..+...++||||+.+++|.+++.....            .....+++.....++.|++.||+||| 
T Consensus        63 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH-  141 (283)
T cd05090          63 ELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLS-  141 (283)
T ss_pred             hCCCCCeeeEEEEEecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH-
Confidence            47899999999999999999999999999999999864321            00134778889999999999999999 


Q ss_pred             CCCCCeeeccccCcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCcccccchhhhhhHHHHH
Q 044155           69 GFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFEL  147 (239)
Q Consensus        69 ~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~  147 (239)
                        +++++|+||||+||+++.++.++|+|||++....... ........++..|+|||++.+..++.++|+||||+++|+|
T Consensus       142 --~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el  219 (283)
T cd05090         142 --SHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEI  219 (283)
T ss_pred             --hcCeehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHH
Confidence              8999999999999999999999999999987653222 1122333456789999999888899999999999999999


Q ss_pred             hc-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          148 LT-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       148 ~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                      ++ |..||.....                     .+.......... ...+...+..+.+++.+||+.||.+||++.+++
T Consensus       220 ~~~g~~p~~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~  277 (283)
T cd05090         220 FSFGLQPYYGFSN---------------------QEVIEMVRKRQL-LPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIH  277 (283)
T ss_pred             HcCCCCCCCCCCH---------------------HHHHHHHHcCCc-CCCCCCCCHHHHHHHHHHcccCcccCcCHHHHH
Confidence            98 8777753221                     001111100110 011123456788999999999999999999999


Q ss_pred             HHHHH
Q 044155          227 KKLRQ  231 (239)
Q Consensus       227 ~~L~~  231 (239)
                      +.|..
T Consensus       278 ~~l~~  282 (283)
T cd05090         278 TRLRS  282 (283)
T ss_pred             HHhhc
Confidence            88763

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=9.4e-37  Score=240.69  Aligned_cols=203  Identities=21%  Similarity=0.282  Sum_probs=159.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++.+++...+..++||||+++++|.+++....    ..+++.....++.|++.|+.|||   +.+++|+|||
T Consensus        62 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dlk  134 (268)
T cd05063          62 QFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHD----GEFSSYQLVGMLRGIAAGMKYLS---DMNYVHRDLA  134 (268)
T ss_pred             cCCCCCeeEEEEEEccCCCcEEEEEcCCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccc
Confidence            4789999999999999999999999999999999987643    46788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCccee--ecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHIT--DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.++++|||++...........  .....+..|+|||.+....++.++|+||||+++|++++ |..||...
T Consensus       135 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~  214 (268)
T cd05063         135 ARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDM  214 (268)
T ss_pred             hhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcC
Confidence            9999999999999999999875533221111  11123457999999988889999999999999999997 88887532


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      ...                     +......... ..+.....+..+.+++.+||..+|.+||++.++++.|+++
T Consensus       215 ~~~---------------------~~~~~i~~~~-~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         215 SNH---------------------EVMKAINDGF-RLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             CHH---------------------HHHHHHhcCC-CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            210                     0111110000 0001113456789999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=6.7e-37  Score=242.77  Aligned_cols=205  Identities=21%  Similarity=0.365  Sum_probs=157.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC--CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP--HFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++|+||+++++++.+....++||||+++++|.+++......  ....+++..+..++.|++.||.|||   +.+++|+|
T Consensus        65 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~d  141 (277)
T cd05036          65 KFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE---ENHFIHRD  141 (277)
T ss_pred             hCCCCCEeeEEEEEccCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecc
Confidence            478999999999999988999999999999999999765321  1135889999999999999999999   89999999


Q ss_pred             ccCcceeecCCC---ceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCC
Q 044155           79 FKTSCILFNEEN---VAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDV  153 (239)
Q Consensus        79 lk~~nil~~~~~---~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p  153 (239)
                      |||+||+++.++   .++|+|||+++........ .......+..|+|||++.+..++.++||||||+++|+|++ |..|
T Consensus       142 lkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~p  221 (277)
T cd05036         142 IAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMP  221 (277)
T ss_pred             cchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCC
Confidence            999999998765   5899999998765322111 1112233567999999988889999999999999999997 8778


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      |.....                     .+......... ....+...+..+.+++.+||+.+|.+|||+.+|++.|+
T Consensus       222 f~~~~~---------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         222 YPGRTN---------------------QEVMEFVTGGG-RLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             CCCCCH---------------------HHHHHHHHcCC-cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence            753221                     01111110000 00011234567889999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=5.8e-37  Score=243.89  Aligned_cols=216  Identities=25%  Similarity=0.369  Sum_probs=157.3

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++...  ...++|+||+++++|.+++....    ..+++..+..++.|++.||+|||   +.+++|+|
T Consensus        61 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~l~~~~~~~~~~~l~~aL~~LH---~~~i~H~d  133 (284)
T cd05081          61 SLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHR----ERLDHRKLLLYASQICKGMEYLG---SKRYVHRD  133 (284)
T ss_pred             hCCCCCeeEEEEEEccCCCCceEEEEEecCCCCHHHHHHhcC----cCCCHHHHHHHHHHHHHHHHHHH---HCCceecc
Confidence            47899999999987543  46789999999999999997542    45789999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||+||+++.++.++|+|||++.........  ......++..|+|||++.+..++.++||||||++++||++|..++..
T Consensus       134 lkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~  213 (284)
T cd05081         134 LATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCS  213 (284)
T ss_pred             CCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCC
Confidence            9999999999999999999998765432211  11112234569999999888899999999999999999998766432


Q ss_pred             ccccccccccchhhhhhhhhccc---hhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNR---FTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      ....         +.........   ........+............+..+.+++.+||..+|++|||+.++++.|+++
T Consensus       214 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         214 PPAE---------FMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             cchh---------hhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence            2110         0000000000   00000011111111111123456799999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=1e-37  Score=252.90  Aligned_cols=191  Identities=22%  Similarity=0.275  Sum_probs=153.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++...+..++||||+.+++|...+...     ..+++..+..++.||+.||.|||   +.+++||||||
T Consensus        53 ~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~al~~lH---~~givH~Dlkp  124 (325)
T cd05604          53 VKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQRE-----RSFPEPRARFYAAEIASALGYLH---SINIVYRDLKP  124 (325)
T ss_pred             CCCCCCccEEEEEecCCEEEEEEcCCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCH
Confidence            68999999999999999999999999999999888764     56889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.++|+|||++...... ........|++.|+|||++.+..++.++||||||+++|+|++|..||.....  
T Consensus       125 ~NIll~~~~~~kL~DfG~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~--  201 (325)
T cd05604         125 ENILLDSQGHVVLTDFGLCKEGIAQ-SDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDV--  201 (325)
T ss_pred             HHeEECCCCCEEEeecCCcccCCCC-CCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCH--
Confidence            9999999999999999998643221 1122345689999999999988899999999999999999999999853221  


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD  224 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~e  224 (239)
                                         .+...........  .....+..+.+++.+|++.+|.+||++.+
T Consensus       202 -------------------~~~~~~~~~~~~~--~~~~~~~~~~~ll~~ll~~~p~~R~~~~~  243 (325)
T cd05604         202 -------------------AEMYDNILHKPLV--LRPGASLTAWSILEELLEKDRQRRLGAKE  243 (325)
T ss_pred             -------------------HHHHHHHHcCCcc--CCCCCCHHHHHHHHHHhccCHHhcCCCCC
Confidence                               1111111111110  01134456789999999999999998863

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=6.6e-37  Score=243.44  Aligned_cols=206  Identities=17%  Similarity=0.306  Sum_probs=159.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC-----------CCCCcCCHHHHHHHHHHHHHHHhHHhhC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-----------PHFEPLLLKHRLKIAMDIVHALAYLHFG   69 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~-----------~~~~~~~~~~~~~~~~~i~~~l~~LH~~   69 (239)
                      +++||||+++++++.+....++++||+.+++|.+++.....           .....++...+..++.|++.||.|||  
T Consensus        64 ~l~h~~iv~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH--  141 (283)
T cd05091          64 RLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLS--  141 (283)
T ss_pred             cCCCCCcCeEEEEEcCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH--
Confidence            47899999999999999999999999999999999853211           01135788889999999999999999  


Q ss_pred             CCCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHh
Q 044155           70 FPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        70 ~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~  148 (239)
                       +++++|+||||+||+++.++.+||+|||+++....... .......+++.|+|||.+.+..++.++||||||+++|||+
T Consensus       142 -~~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  220 (283)
T cd05091         142 -SHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVF  220 (283)
T ss_pred             -HcCccccccchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence             89999999999999999999999999999876533221 1123334567899999998888999999999999999999


Q ss_pred             c-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          149 T-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       149 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      + |..||.....                     .+........... ..+...+..+.+++.+||+.+|.+|||+++++.
T Consensus       221 ~~g~~p~~~~~~---------------------~~~~~~i~~~~~~-~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~  278 (283)
T cd05091         221 SYGLQPYCGYSN---------------------QDVIEMIRNRQVL-PCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHS  278 (283)
T ss_pred             cCCCCCCCCCCH---------------------HHHHHHHHcCCcC-CCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHH
Confidence            8 7667643211                     1111111111111 112245667889999999999999999999999


Q ss_pred             HHHH
Q 044155          228 KLRQ  231 (239)
Q Consensus       228 ~L~~  231 (239)
                      .|+.
T Consensus       279 ~l~~  282 (283)
T cd05091         279 RLRT  282 (283)
T ss_pred             HhhC
Confidence            9864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=7.8e-37  Score=241.32  Aligned_cols=208  Identities=21%  Similarity=0.244  Sum_probs=151.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+.+....++||||+++++|.+++.+.... ....+......++.|++.||+|||   +.+++|+|||
T Consensus        51 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dik  126 (268)
T cd05086          51 ILQHPNILQCLGQCVEAIPYLLVFEYCELGDLKSYLSQEQWH-RRNSQLLLLQRMACEIAAGVTHMH---KHNFLHSDLA  126 (268)
T ss_pred             ccCCcchhheEEEecCCCccEEEEecCCCCcHHHHHHhhhcc-cccccHHHHHHHHHHHHHHHHHHH---HCCeeccCCc
Confidence            378999999999999999999999999999999999764221 145677788899999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC-cceeecccccccccCcccccc-------CCcccccchhhhhhHHHHHhcC-C
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRT-------GVFNEKSNVFSFSVFLFELLTG-W  151 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~-------~~~~~~~Di~slG~~l~~~~~g-~  151 (239)
                      |+||+++.++.++|+|||++....... ........++..|+|||++..       ..++.++||||||+++|+|+++ .
T Consensus       127 p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~  206 (268)
T cd05086         127 LRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAA  206 (268)
T ss_pred             cceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCC
Confidence            999999999999999999875322111 111234457889999998743       2357899999999999999975 5


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      .||......        +........         .......+......++.+.+++..|| .+|.+|||++++++.|.
T Consensus       207 ~p~~~~~~~--------~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         207 QPYSHLSDR--------EVLNHVIKD---------QQVKLFKPQLELPYSERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             CCCCCCCHH--------HHHHHHHhh---------cccccCCCccCCCCcHHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            566432210        000000000         00000011111134466788999999 68999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=9.2e-37  Score=241.17  Aligned_cols=207  Identities=25%  Similarity=0.369  Sum_probs=156.7

Q ss_pred             CCCCcccceeeEEEEeC------CCceEEEEEccCCChhhhhhcCCC-CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC
Q 044155            1 QMSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQ-PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP   73 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~------~~~~iv~e~~~~~sL~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~   73 (239)
                      +++||||+++++++...      ...+++|||+++++|.+++..... .....+++.....++.|++.||+|||   +++
T Consensus        56 ~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~  132 (272)
T cd05075          56 EFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLS---SKS  132 (272)
T ss_pred             hCCCCCcceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            47899999999987532      246899999999999988753321 11245789999999999999999999   899


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCCcce-eecccccccccCccccccCCcccccchhhhhhHHHHHhc-CC
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHI-TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GW  151 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~  151 (239)
                      ++|+||||+||+++.++.++|+|||++.......... .....+++.|+|||......++.++|+||||+++|++++ |.
T Consensus       133 i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~  212 (272)
T cd05075         133 FIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQ  212 (272)
T ss_pred             eeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999987654332211 122345678999999998889999999999999999999 67


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||......                     +........... ......+..+.+++.+||..||.+|||+.++++.|++
T Consensus       213 ~p~~~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~  270 (272)
T cd05075         213 TPYPGVENS---------------------EIYDYLRQGNRL-KQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEK  270 (272)
T ss_pred             CCCCCCCHH---------------------HHHHHHHcCCCC-CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHh
Confidence            777532210                     000000000000 0011344668999999999999999999999999987


Q ss_pred             H
Q 044155          232 I  232 (239)
Q Consensus       232 l  232 (239)
                      +
T Consensus       271 ~  271 (272)
T cd05075         271 A  271 (272)
T ss_pred             h
Confidence            5

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=1.2e-36  Score=241.54  Aligned_cols=204  Identities=20%  Similarity=0.315  Sum_probs=158.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++... ..++++|++++|+|.+++....    ..++...+..++.|++.||+|||   +.+++|+|||
T Consensus        65 ~~~~~~i~~~~~~~~~~-~~~l~~~~~~~g~l~~~l~~~~----~~~~~~~~~~~~~qi~~~L~~lH---~~~iiH~dlk  136 (279)
T cd05109          65 GVGSPYVCRLLGICLTS-TVQLVTQLMPYGCLLDYVRENK----DRIGSQDLLNWCVQIAKGMSYLE---EVRLVHRDLA  136 (279)
T ss_pred             hcCCCCCceEEEEEcCC-CcEEEEEcCCCCCHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccc
Confidence            36899999999998754 4678999999999999997642    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||++++++.++|+|||+++........ ......++..|+|||...+..++.++||||||+++||+++ |..||+...
T Consensus       137 p~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~  216 (279)
T cd05109         137 ARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIP  216 (279)
T ss_pred             cceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999998765432211 1112234677999999988889999999999999999998 878875322


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      ..                  .....+.    ...........+..+.+++.+||..||++|||+.++++.|.++..
T Consensus       217 ~~------------------~~~~~~~----~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~  270 (279)
T cd05109         217 AR------------------EIPDLLE----KGERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMAR  270 (279)
T ss_pred             HH------------------HHHHHHH----CCCcCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            10                  0001111    000001112345678899999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.3e-37  Score=243.67  Aligned_cols=205  Identities=21%  Similarity=0.366  Sum_probs=159.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCC-----CCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPH-----FEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++......++||||+++++|.+++.......     ...+++..+..++.|++.||.|||   +.+++
T Consensus        65 ~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~  141 (277)
T cd05032          65 EFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA---AKKFV  141 (277)
T ss_pred             hCCCCceeEEEEEEcCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcc
Confidence            3689999999999999999999999999999999997543211     124678889999999999999999   99999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCC
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDV  153 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p  153 (239)
                      |+||||+||+++.++.++|+|||+++....... .......++..|+|||.+....++.++||||||+++|++++ |..|
T Consensus       142 H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p  221 (277)
T cd05032         142 HRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQP  221 (277)
T ss_pred             ccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCC
Confidence            999999999999999999999999875533221 12233446778999999988889999999999999999998 8777


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      |.....                     .+.......... ...+...+..+.+++.+||..+|++|||+.++++.|+
T Consensus       222 ~~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         222 YQGLSN---------------------EEVLKFVIDGGH-LDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             CccCCH---------------------HHHHHHHhcCCC-CCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence            743221                     000001111100 0011133567899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=9.4e-37  Score=239.70  Aligned_cols=202  Identities=21%  Similarity=0.347  Sum_probs=158.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++. ....+++|||+.+++|.+++.....   ..++......++.|++.||.|||   +.+++|+|||
T Consensus        57 ~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~~~~~~~---~~~~~~~~~~i~~~i~~al~~LH---~~~i~H~dl~  129 (260)
T cd05067          57 QLQHPRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPEG---IKLTINKLIDMAAQIAEGMAFIE---RKNYIHRDLR  129 (260)
T ss_pred             hcCCcCeeeEEEEEc-cCCcEEEEEcCCCCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHh---cCCeeccccc
Confidence            478999999999874 4568999999999999999876543   46788999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+...............++..|+|||++....++.++||||||+++|++++ |..||.....
T Consensus       130 p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~  209 (260)
T cd05067         130 AANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTN  209 (260)
T ss_pred             HHhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCCh
Confidence            999999999999999999987654332222233345678999999988889999999999999999998 8888753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .                     +..... ............+.++.+++.+||+.+|++|||++++++.|+.
T Consensus       210 ~---------------------~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         210 P---------------------EVIQNL-ERGYRMPRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             H---------------------HHHHHH-HcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence            0                     000000 0000111112345679999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=7.3e-37  Score=248.91  Aligned_cols=208  Identities=23%  Similarity=0.416  Sum_probs=159.3

Q ss_pred             CCcccceeeEEEEeC-CCceEEEEEccCCChhhhhhcCCCCC--------------------------------------
Q 044155            3 SHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQPH--------------------------------------   43 (239)
Q Consensus         3 ~H~niv~l~~~~~~~-~~~~iv~e~~~~~sL~~~l~~~~~~~--------------------------------------   43 (239)
                      +|+||+++++++... ...++++||+++++|.+++.......                                      
T Consensus        69 ~h~niv~~~~~~~~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
T cd05054          69 HHLNVVNLLGACTKPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFI  148 (337)
T ss_pred             cCcchhheeeeEecCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccc
Confidence            799999999988754 56789999999999999886532100                                      


Q ss_pred             ------------------CCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCC
Q 044155           44 ------------------FEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPE  105 (239)
Q Consensus        44 ------------------~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~  105 (239)
                                        ...+++..+..++.|++.||+|||   +.+|+||||||+||+++.++.++|+|||++.....
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~  225 (337)
T cd05054         149 EDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYK  225 (337)
T ss_pred             cCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEeCCCcEEEeccccchhccc
Confidence                              025788899999999999999999   89999999999999999999999999999876533


Q ss_pred             CCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccccccccccchhhhhhhhhccchhhh
Q 044155          106 GETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEI  183 (239)
Q Consensus       106 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (239)
                      .... ......++..|+|||++.+..++.++|||||||++|+|++ |..||........                 ....
T Consensus       226 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~-----------------~~~~  288 (337)
T cd05054         226 DPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEE-----------------FCRR  288 (337)
T ss_pred             CcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHH-----------------HHHH
Confidence            2211 1223345678999999999999999999999999999997 8888753211000                 0000


Q ss_pred             hhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          184 VDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                          +........+...+.++.+++.+||+.+|.+|||+.|+++.|++++.
T Consensus       289 ----~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         289 ----LKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             ----HhccCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                00000001112345678999999999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-36  Score=240.67  Aligned_cols=207  Identities=26%  Similarity=0.413  Sum_probs=159.7

Q ss_pred             CCCCcccceeeEEEEeCCC------ceEEEEEccCCChhhhhhcCCC-CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC
Q 044155            1 QMSHNHILKLIGCCLETPI------PILVFESVQYGTLWDRILGAPQ-PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP   73 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~------~~iv~e~~~~~sL~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~   73 (239)
                      +++||||+++++++.....      .++++||+++++|..++..... .....++......++.|++.||.|||   +.+
T Consensus        57 ~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH---~~~  133 (273)
T cd05035          57 DFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLS---NRN  133 (273)
T ss_pred             hCCCCCeeeEEeeeccCCccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHH---hCC
Confidence            3689999999998876543      7899999999999998865432 11246889999999999999999999   899


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCCcce-eecccccccccCccccccCCcccccchhhhhhHHHHHhc-CC
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHI-TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GW  151 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~  151 (239)
                      ++|+||||+||++++++.++|+|||+++......... .....++..|+|||.+....++.++||||||+++|||++ |.
T Consensus       134 i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~  213 (273)
T cd05035         134 FIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQ  213 (273)
T ss_pred             eeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999987654332211 122234678999999988889999999999999999999 77


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||.....                     .+..+....... ...+...+..+.+++.+||+.||.+|||+.|+++.|++
T Consensus       214 ~p~~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~  271 (273)
T cd05035         214 TPYPGVEN---------------------HEIYDYLRHGNR-LKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLEN  271 (273)
T ss_pred             CCCCCCCH---------------------HHHHHHHHcCCC-CCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHh
Confidence            77643221                     011111111111 11122455678999999999999999999999999988


Q ss_pred             H
Q 044155          232 I  232 (239)
Q Consensus       232 l  232 (239)
                      +
T Consensus       272 ~  272 (273)
T cd05035         272 I  272 (273)
T ss_pred             h
Confidence            6

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=8.6e-37  Score=242.55  Aligned_cols=205  Identities=23%  Similarity=0.340  Sum_probs=158.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC----------CCCcCCHHHHHHHHHHHHHHHhHHhhCC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP----------HFEPLLLKHRLKIAMDIVHALAYLHFGF   70 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~   70 (239)
                      +++|+||+++++++.+....+++|||+++++|.+++......          ....+++..++.++.|++.|++|||   
T Consensus        63 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---  139 (280)
T cd05092          63 VLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLA---  139 (280)
T ss_pred             cCCCCCCceEEEEEecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHH---
Confidence            478999999999999999999999999999999999764320          1134788999999999999999999   


Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~  149 (239)
                      +.+++|+||||+||++++++.++|+|||++........ .......+++.|+|||.+.+..++.++||||||+++|+|++
T Consensus       140 ~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~  219 (280)
T cd05092         140 SLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFT  219 (280)
T ss_pred             HCCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHc
Confidence            99999999999999999999999999999865432221 11122334678999999998889999999999999999998


Q ss_pred             -CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          150 -GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       150 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                       |..||......                     +.......... ...+...+..+.+++.+||+.||.+|||+++|++.
T Consensus       220 ~g~~p~~~~~~~---------------------~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~  277 (280)
T cd05092         220 YGKQPWYQLSNT---------------------EAIECITQGRE-LERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSR  277 (280)
T ss_pred             CCCCCCccCCHH---------------------HHHHHHHcCcc-CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHH
Confidence             87887432211                     01111111100 00011345678899999999999999999999998


Q ss_pred             HH
Q 044155          229 LR  230 (239)
Q Consensus       229 L~  230 (239)
                      |+
T Consensus       278 l~  279 (280)
T cd05092         278 LQ  279 (280)
T ss_pred             Hh
Confidence            86

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=2.3e-37  Score=250.42  Aligned_cols=191  Identities=21%  Similarity=0.294  Sum_probs=153.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+.+...     ..++......++.|++.||.|||   +.+++|||||
T Consensus        52 ~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~L~~lH---~~~ivH~Dlk  123 (321)
T cd05603          52 NLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQRE-----RCFLEPRARFYAAEVASAIGYLH---SLNIIYRDLK  123 (321)
T ss_pred             hCCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCC
Confidence            368999999999999999999999999999998888654     56788889999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.+||+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||....  
T Consensus       124 p~NIll~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--  200 (321)
T cd05603         124 PENILLDSQGHVVLTDFGLCKEGVEPE-ETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRD--  200 (321)
T ss_pred             HHHeEECCCCCEEEccCCCCccCCCCC-CccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCC--
Confidence            999999999999999999886532211 12234568999999999988889999999999999999999999985321  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                                         .......+......  .+...+..+.+++.+||+.||.+||++.
T Consensus       201 -------------------~~~~~~~i~~~~~~--~~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         201 -------------------VSQMYDNILHKPLQ--LPGGKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             -------------------HHHHHHHHhcCCCC--CCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence                               11111111111111  1123455688999999999999999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=1.6e-36  Score=240.89  Aligned_cols=210  Identities=21%  Similarity=0.329  Sum_probs=162.4

Q ss_pred             CCCCcccceeeEEEEe-CCCceEEEEEccCCChhhhhhcCCCC---CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            1 QMSHNHILKLIGCCLE-TPIPILVFESVQYGTLWDRILGAPQP---HFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~-~~~~~iv~e~~~~~sL~~~l~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +++||||+++++++.. +...+++++|+++++|.+++......   ....++...+..++.|++.||.|||   +.+++|
T Consensus        64 ~l~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~i~H  140 (280)
T cd05043          64 GLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH---KRGVIH  140 (280)
T ss_pred             hCCCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCEee
Confidence            4789999999998776 46788999999999999998764321   1145889999999999999999999   999999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVS  154 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~  154 (239)
                      +||||+||+++.++.++|+|||+++........ ......++..|+|||++.+..++.++||||||+++|++++ |..||
T Consensus       141 ~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~  220 (280)
T cd05043         141 KDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPY  220 (280)
T ss_pred             cccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCc
Confidence            999999999999999999999998765332221 1123345678999999988889999999999999999999 88887


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      ......                     +..... ............++.+.+++.+||..||++|||+.++++.|.++.+
T Consensus       221 ~~~~~~---------------------~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         221 VEIDPF---------------------EMAAYL-KDGYRLAQPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             CcCCHH---------------------HHHHHH-HcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            532210                     000000 0000000111345678999999999999999999999999999876


Q ss_pred             h
Q 044155          235 S  235 (239)
Q Consensus       235 ~  235 (239)
                      .
T Consensus       279 ~  279 (280)
T cd05043         279 Q  279 (280)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=4.9e-37  Score=251.57  Aligned_cols=195  Identities=20%  Similarity=0.285  Sum_probs=149.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++...+..++||||+++++|.+.         .......+..++.||+.||.|||   +.+++|+|||
T Consensus       128 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~---------~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlk  195 (353)
T PLN00034        128 DVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGT---------HIADEQFLADVARQILSGIAYLH---RRHIVHRDIK  195 (353)
T ss_pred             hCCCCCcceeeeEeccCCeEEEEEecCCCCccccc---------ccCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCC
Confidence            47899999999999999999999999999998542         23456778889999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-----CcccccchhhhhhHHHHHhcCCCCcc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-----VFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |+||+++.++.+||+|||++....... .......|+..|+|||++...     ..+.++|||||||++|+|++|+.||.
T Consensus       196 p~NIll~~~~~~kL~DfG~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~  274 (353)
T PLN00034        196 PSNLLINSAKNVKIADFGVSRILAQTM-DPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFG  274 (353)
T ss_pred             HHHEEEcCCCCEEEcccccceeccccc-ccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999987653221 112345689999999987532     24568999999999999999999986


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                  ..+........... ........+..+.++|.+||+.||++|||+.|+++
T Consensus       275 ~~~~------------------~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~  327 (353)
T PLN00034        275 VGRQ------------------GDWASLMCAICMSQ-PPEAPATASREFRHFISCCLQREPAKRWSAMQLLQ  327 (353)
T ss_pred             CCCC------------------ccHHHHHHHHhccC-CCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            2211                  01111111111100 01111245567899999999999999999999987

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-37  Score=230.34  Aligned_cols=210  Identities=18%  Similarity=0.255  Sum_probs=160.3

Q ss_pred             CCCCcccceeeEEEEeC-----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC--
Q 044155            1 QMSHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP--   73 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~-----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~--   73 (239)
                      +++||||++++++...+     ...|++++|...|||.+.+....... ..+++.+.++|+.+++.||.+||   +..  
T Consensus        74 kf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg-~~~sE~~iL~if~gic~gL~~lH---~~~~~  149 (302)
T KOG2345|consen   74 KFNSPNVLRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKG-NFVSEAQILWIFLGICRGLEALH---EKEPP  149 (302)
T ss_pred             hhCCcchHHHHHHHHHhhccCceeEEEEeehhccccHHHHHHHHhhcC-CccCHHHHHHHHHHHHHHHHHHh---ccCCc
Confidence            47899999999987643     34799999999999999887643321 56899999999999999999999   665  


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCC---c-c----eeecccccccccCcccccc---CCcccccchhhhhh
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE---T-H----ITDTVMGTLGYCAPEYMRT---GVFNEKSNVFSFSV  142 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~---~-~----~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~  142 (239)
                      +.||||||.||++++++.+++.|||.+....-..   . .    .......|..|+|||.+..   ...++++|||||||
T Consensus       150 yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGC  229 (302)
T KOG2345|consen  150 YAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGC  229 (302)
T ss_pred             ccccCCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhH
Confidence            9999999999999999999999999876543111   0 0    1122347899999999864   34789999999999


Q ss_pred             HHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          143 FLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       143 ~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                      ++|.|+.|..||+......+...                -   ++....+.-+.....+..+.++|..|++.||.+||++
T Consensus       230 tLYa~mf~~sPfe~~~~~GgSla----------------L---Av~n~q~s~P~~~~yse~l~~lik~mlqvdP~qRP~i  290 (302)
T KOG2345|consen  230 TLYAMMFGESPFERIYQQGGSLA----------------L---AVQNAQISIPNSSRYSEALHQLIKSMLQVDPNQRPTI  290 (302)
T ss_pred             HHHHHHHcCCcchHHhhcCCeEE----------------E---eeeccccccCCCCCccHHHHHHHHHHhcCCcccCCCH
Confidence            99999999999874433111110                0   1111111112222467788999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 044155          223 VDVAKKLRQIY  233 (239)
Q Consensus       223 ~ell~~L~~l~  233 (239)
                      .+++..++.+.
T Consensus       291 ~~ll~~~d~Li  301 (302)
T KOG2345|consen  291 PELLSKLDDLI  301 (302)
T ss_pred             HHHHHHHHhhc
Confidence            99999998764

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=3.5e-37  Score=253.57  Aligned_cols=197  Identities=19%  Similarity=0.254  Sum_probs=153.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++...++||||+++|+|.+++..      ..++...+..++.|++.||+|||   +.+|+|||||
T Consensus        99 ~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~------~~~~~~~~~~~~~qil~aL~~LH---~~~IvHrDLK  169 (370)
T cd05621          99 FANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSN------YDVPEKWAKFYTAEVVLALDAIH---SMGLIHRDVK  169 (370)
T ss_pred             hCCCCCEeeEEEEEEcCCEEEEEEcCCCCCcHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCC
Confidence            36899999999999999999999999999999999965      34788899999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC----cccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV----FNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+|||++.++.+||+|||++...............||+.|+|||++....    ++.++|+||||+++|+|++|..||..
T Consensus       170 p~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~  249 (370)
T cd05621         170 PDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYA  249 (370)
T ss_pred             HHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCC
Confidence            99999999999999999998765433222233556899999999987543    77899999999999999999999854


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcC--CCcHHHHHHHHHHHHHHhhhcCCCCCC--CCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED--VSSIEKEQQLHASAQVTFECIKDSPAD--RPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~ell~  227 (239)
                      ...                     ......+....  ...+.....+..+++++..|+..++.+  |+|+.|+++
T Consensus       250 ~~~---------------------~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~  303 (370)
T cd05621         250 DSL---------------------VGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQ  303 (370)
T ss_pred             CCH---------------------HHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhc
Confidence            221                     01111111100  111111234667889999999855543  889999887

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.6e-37  Score=243.46  Aligned_cols=200  Identities=21%  Similarity=0.302  Sum_probs=158.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+.++...++||||+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        56 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk  129 (285)
T cd05605          56 KVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGN---PGFDEERAVFYAAEITCGLEDLH---RERIVYRDLK  129 (285)
T ss_pred             hcCCCCEeeeeeeecCCCeEEEEEeccCCCcHHHHHHhcCc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCC
Confidence            47899999999999998999999999999999988865422   46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||++++++.++|+|||++........  .....|++.|+|||++.+..++.++||||+|+++|++++|..||......
T Consensus       130 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~  207 (285)
T cd05605         130 PENILLDDYGHIRISDLGLAVEIPEGET--IRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEK  207 (285)
T ss_pred             HHHEEECCCCCEEEeeCCCceecCCCCc--cccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchh
Confidence            9999999999999999999876533221  12346789999999998888999999999999999999999998642210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                      .                 .............  ...+...+..+.+++.+||..||.+||     ++++++.
T Consensus       208 ~-----------------~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05605         208 V-----------------KREEVERRVKEDQ--EEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKA  260 (285)
T ss_pred             h-----------------HHHHHHHHhhhcc--cccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhc
Confidence            0                 0001111111111  111124567789999999999999999     8888865

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=8.5e-37  Score=239.26  Aligned_cols=199  Identities=18%  Similarity=0.237  Sum_probs=158.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++.+.+++..+++|||+++++|.+++.....   ..++......++.|++.||.+||   +.+++|+|||
T Consensus        54 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dl~  127 (255)
T cd08219          54 KMKHPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRG---KLFPEDTILQWFVQMCLGVQHIH---EKRVLHRDIK  127 (255)
T ss_pred             hCCCCCcceEEEEEEECCEEEEEEeeCCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCC
Confidence            47899999999999999999999999999999998875432   45788999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++++|||.+........ ......+++.|+|||++.+..++.++|+||||+++|+|++|..||....  
T Consensus       128 p~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~--  204 (255)
T cd08219         128 SKNIFLTQNGKVKLGDFGSARLLTSPGA-YACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANS--  204 (255)
T ss_pred             cceEEECCCCcEEEcccCcceeeccccc-ccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCC--
Confidence            9999999999999999999865532211 1223457888999999988889999999999999999999999985321  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                                         ............... .+...+..+.+++.+||+.||.+|||+.+++.+
T Consensus       205 -------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         205 -------------------WKNLILKVCQGSYKP-LPSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             -------------------HHHHHHHHhcCCCCC-CCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence                               011111111111111 112345668899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1.5e-37  Score=252.41  Aligned_cols=197  Identities=16%  Similarity=0.157  Sum_probs=155.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+....++||||+++++|.+++....    ..+++..+..++.|++.||.|||   +.+++||||||
T Consensus        58 ~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~l~~~~~~~~~~qi~~aL~~lH---~~~i~H~Dlkp  130 (330)
T cd05601          58 SNSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYE----DQFDEDMAQFYLAELVLAIHSVH---QMGYVHRDIKP  130 (330)
T ss_pred             CCCCCCcceeeEEecCCeEEEEECCCCCCCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEcccCch
Confidence            689999999999999999999999999999999997653    46889999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc------cCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR------TGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      +||+++.++.++|+|||++...............|++.|+|||++.      ...++.++||||||+++|+|++|..||.
T Consensus       131 ~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~  210 (330)
T cd05601         131 ENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFH  210 (330)
T ss_pred             HheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCC
Confidence            9999999999999999998765433322233456899999999986      3457789999999999999999999986


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhc--CCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVE--DVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......                     ....+...  ....+.....+..+.+++..||. +|.+|||+++++.
T Consensus       211 ~~~~~~---------------------~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         211 EGTSAK---------------------TYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             CCCHHH---------------------HHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence            432110                     00000000  00000011345678899999998 9999999999875

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1e-36  Score=243.93  Aligned_cols=197  Identities=18%  Similarity=0.236  Sum_probs=155.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+..+...++||||+++++|.+++..      ..++......++.|++.||.|||   ..+++|+|||
T Consensus        73 ~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~------~~~~~~~~~~i~~ql~~aL~~LH---~~gi~H~dLk  143 (296)
T cd06654          73 ENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE------TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIK  143 (296)
T ss_pred             hCCCCCEeeEEEEEEeCCEEEEeecccCCCCHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            36899999999999999999999999999999999864      34778899999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++....... .......+++.|+|||.+.+..++.++|+||||+++|+|++|..||......
T Consensus       144 p~Nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~  222 (296)
T cd06654         144 SDNILLGMDGSVKLTDFGFCAQITPEQ-SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL  222 (296)
T ss_pred             HHHEEEcCCCCEEECccccchhccccc-cccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            999999999999999999876543221 1122345788999999998888899999999999999999999998532210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                    .............+...+..+.+++.+||..+|.+|||+.++++
T Consensus       223 ~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~  269 (296)
T cd06654         223 RAL--------------------YLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (296)
T ss_pred             HhH--------------------HHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence            000                    00000000000111244567889999999999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=9.6e-37  Score=239.67  Aligned_cols=203  Identities=24%  Similarity=0.375  Sum_probs=159.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++|||++++++|.+++.....   ..++...+..++.|++.|+.|||   +.+++|+|||
T Consensus        57 ~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~~---~~~~~~~~~~~~~~i~~al~~lh---~~~i~h~di~  130 (261)
T cd05034          57 KLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEG---KKLRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLA  130 (261)
T ss_pred             hCCCCCEeeeeeeeecCCceEEEEeccCCCCHHHHHhcccc---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcc
Confidence            47899999999999988889999999999999999977543   46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++++|||.+................+..|+|||.+.+...+.++|+||||++++++++ |+.||.....
T Consensus       131 p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~  210 (261)
T cd05034         131 ARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTN  210 (261)
T ss_pred             hheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            999999999999999999987654322111222234568999999998889999999999999999998 8888743221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .                     ......... .....+...+..+.+++.+||..+|.+|||++++.+.|+.
T Consensus       211 ~---------------------~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         211 R---------------------EVLEQVERG-YRMPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             H---------------------HHHHHHHcC-CCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            0                     001111100 0001111235678999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=2e-36  Score=239.01  Aligned_cols=203  Identities=20%  Similarity=0.308  Sum_probs=158.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++...++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        61 ~l~h~ni~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~~l~~al~~lH---~~g~~H~dl~  133 (269)
T cd05065          61 QFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQND----GQFTVIQLVGMLRGIAAGMKYLS---EMNYVHRDLA  133 (269)
T ss_pred             hCCCcCcceEEEEECCCCceEEEEecCCCCcHHHHHhhCC----CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccC
Confidence            4789999999999999999999999999999999987643    45788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcce--eeccc--ccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHI--TDTVM--GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSD  155 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~--~~~~~--~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~  155 (239)
                      |+||+++.++.++++|||.+..........  .....  .+..|+|||.+.+..++.++|+||||+++||+++ |..||.
T Consensus       134 p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~  213 (269)
T cd05065         134 ARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW  213 (269)
T ss_pred             hheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCC
Confidence            999999999999999999886553322111  11111  2357999999988889999999999999999886 888875


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      .....                     +...... ...........+..+.+++.+||..+|.+||++++++..|+++
T Consensus       214 ~~~~~---------------------~~~~~i~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         214 DMSNQ---------------------DVINAIE-QDYRLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             CCCHH---------------------HHHHHHH-cCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            33210                     0011100 0011111123456788999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.2e-36  Score=244.87  Aligned_cols=216  Identities=21%  Similarity=0.289  Sum_probs=159.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~i~H~dl   79 (239)
                      +++||||+++++.+..++..++||||+++++|.+++...     ..++...+..++.|++.||.|||   + .+++|+||
T Consensus        55 ~l~h~~iv~~~~~~~~~~~~~lv~ey~~~~~L~~~l~~~-----~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dl  126 (308)
T cd06615          55 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-----GRIPENILGKISIAVLRGLTYLR---EKHKIMHRDV  126 (308)
T ss_pred             hCCCCCCCeEEEEEeeCCEEEEEeeccCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hhCCEEECCC
Confidence            478999999999999999999999999999999999765     56889999999999999999999   6 58999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||+||+++.++.++|+|||++.......   .....++..|+|||.+.+..++.++|+||||+++|++++|..||.....
T Consensus       127 ~p~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~  203 (308)
T cd06615         127 KPSNILVNSRGEIKLCDFGVSGQLIDSM---ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDA  203 (308)
T ss_pred             ChHHEEEecCCcEEEccCCCcccccccc---cccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcch
Confidence            9999999999999999999876543221   2345678899999999888889999999999999999999999853321


Q ss_pred             cccccccchhhhhhh------------h----hccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          160 VHDLVCPFSEYLKNC------------F----EDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      .. ....+.......            .    ......+..+...............+..+.+++.+||..+|++|||+.
T Consensus       204 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~  282 (308)
T cd06615         204 KE-LEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLK  282 (308)
T ss_pred             hh-HHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHH
Confidence            11 000000000000            0    000011111111111100000112456789999999999999999999


Q ss_pred             HHHHH
Q 044155          224 DVAKK  228 (239)
Q Consensus       224 ell~~  228 (239)
                      ++++.
T Consensus       283 ~ll~~  287 (308)
T cd06615         283 ELTKH  287 (308)
T ss_pred             HHhcC
Confidence            99874

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=8.4e-37  Score=241.83  Aligned_cols=206  Identities=22%  Similarity=0.330  Sum_probs=158.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCC----CCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPH----FEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +++||||+++++++.+....++||||+++++|.+++.......    ...+++..+..++.|++.||+|||   +.+++|
T Consensus        64 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H  140 (275)
T cd05046          64 KLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLS---NARFVH  140 (275)
T ss_pred             hcCCcceeeeEEEECCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhh---hcCccc
Confidence            4789999999999998889999999999999999997653210    125889999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSD  155 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~  155 (239)
                      +||||+||+++.++.++++|||++...............++..|+|||.+.+...+.++||||||+++|++++ |..||.
T Consensus       141 ~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~  220 (275)
T cd05046         141 RDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFY  220 (275)
T ss_pred             CcCccceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCcc
Confidence            9999999999999999999999876443222222233456778999999988888899999999999999998 666764


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      .....                     ...................+..+.+++.+||+.+|.+|||+.|++..|.
T Consensus       221 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         221 GLSDE---------------------EVLNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             ccchH---------------------HHHHHHHcCCcCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence            32210                     0111111000000011234567899999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=2.5e-37  Score=237.47  Aligned_cols=218  Identities=18%  Similarity=0.206  Sum_probs=161.9

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++|||||.+.++....  +..++|||||+ -+|..++..-.    +++...+++.+..|++.|++|||   ...|+|||
T Consensus       131 ~~~H~NIV~vkEVVvG~~~d~iy~VMe~~E-hDLksl~d~m~----q~F~~~evK~L~~QlL~glk~lH---~~wilHRD  202 (419)
T KOG0663|consen  131 KARHPNIVEVKEVVVGSNMDKIYIVMEYVE-HDLKSLMETMK----QPFLPGEVKTLMLQLLRGLKHLH---DNWILHRD  202 (419)
T ss_pred             hcCCCCeeeeEEEEeccccceeeeeHHHHH-hhHHHHHHhcc----CCCchHHHHHHHHHHHHHHHHHh---hceeEecc
Confidence            36899999999887744  46899999998 69999998653    57889999999999999999999   99999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCCCcccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      ||++|+|++..|.+||+|||+|+..... ...-+....|.+|+|||.+.+.+ |+++.|+||+|||+.|++++++.|.+.
T Consensus       203 LK~SNLLm~~~G~lKiaDFGLAR~ygsp-~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~  281 (419)
T KOG0663|consen  203 LKTSNLLLSHKGILKIADFGLAREYGSP-LKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGK  281 (419)
T ss_pred             cchhheeeccCCcEEecccchhhhhcCC-cccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999999999887433 22344566899999999999865 999999999999999999999998876


Q ss_pred             cccccccccchhhh---hhhhhccchhhhhhhh-hhc-CCCcH---HH-HHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYL---KNCFEDNRFTEIVDHI-VVE-DVSSI---EK-EQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~-~~~~~---~~-~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .........|....   ...|..-.....+... ... ++...   .. ...++.-.+|+..++.+||.+|.||+|.+.
T Consensus       282 sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~  360 (419)
T KOG0663|consen  282 SEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLK  360 (419)
T ss_pred             chHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhc
Confidence            66544332221110   0001100000000000 000 00000   00 014466789999999999999999999875

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.9e-36  Score=239.29  Aligned_cols=205  Identities=20%  Similarity=0.334  Sum_probs=160.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.. ...++|+||+++++|.+++....    ..+++..+..++.|++.||+|||   +.+++|+|||
T Consensus        65 ~l~h~~i~~~~~~~~~-~~~~~v~e~~~~g~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~di~  136 (279)
T cd05057          65 SVDHPHVVRLLGICLS-SQVQLITQLMPLGCLLDYVRNHK----DNIGSQYLLNWCVQIAKGMSYLE---EKRLVHRDLA  136 (279)
T ss_pred             hCCCCCcceEEEEEec-CceEEEEecCCCCcHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH---hCCEEecccC
Confidence            4789999999999987 77899999999999999997653    45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCccee-ecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHIT-DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.++|+|||.+........... ....++..|+|||.+....++.++|+||||+++|++++ |..||....
T Consensus       137 p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  216 (279)
T cd05057         137 ARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIP  216 (279)
T ss_pred             cceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCC
Confidence            9999999999999999999876543322111 11223567999999988889999999999999999998 888875322


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      .                     .+.......... ...+...+..+.+++.+||..+|++|||+.++++.|.++.+.
T Consensus       217 ~---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05057         217 A---------------------VEIPDLLEKGER-LPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMARD  271 (279)
T ss_pred             H---------------------HHHHHHHhCCCC-CCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhC
Confidence            1                     011111111100 011112335678999999999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=8.6e-37  Score=247.63  Aligned_cols=195  Identities=24%  Similarity=0.333  Sum_probs=153.9

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+.+..++||||+++++|.+++...     ..+++..+..++.|++.||+|||   +++++||||||+
T Consensus        54 ~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~  125 (327)
T cd05617          54 SNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQ-----RKLPEEHARFYAAEICIALNFLH---ERGIIYRDLKLD  125 (327)
T ss_pred             CCCCEeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHH
Confidence            6999999999999999999999999999999888765     56899999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      ||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||........
T Consensus       126 Nili~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~  204 (327)
T cd05617         126 NVLLDADGHIKLTDYGMCKEGLGPG-DTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPD  204 (327)
T ss_pred             HEEEeCCCCEEEeccccceeccCCC-CceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcc
Confidence            9999999999999999886432211 122345689999999999988999999999999999999999999964332111


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                      ..              ...............  .+...+..+.+++.+||+.||.+|+++
T Consensus       205 ~~--------------~~~~~~~~~~~~~~~--~p~~~~~~~~~li~~~L~~dP~~R~~~  248 (327)
T cd05617         205 MN--------------TEDYLFQVILEKPIR--IPRFLSVKASHVLKGFLNKDPKERLGC  248 (327)
T ss_pred             cc--------------cHHHHHHHHHhCCCC--CCCCCCHHHHHHHHHHhccCHHHcCCC
Confidence            10              000111111111111  112345668899999999999999985

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.3e-36  Score=255.12  Aligned_cols=218  Identities=17%  Similarity=0.229  Sum_probs=156.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|+||+++++++..++..++|||++. ++|.+++....    ..+++..++.++.|++.||.|||   +++|+|||||
T Consensus       216 ~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~----~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDLK  287 (461)
T PHA03211        216 RLSHPAVLALLDVRVVGGLTCLVLPKYR-SDLYTYLGARL----RPLGLAQVTAVARQLLSAIDYIH---GEGIIHRDIK  287 (461)
T ss_pred             HCCCCCCCcEEEEEEECCEEEEEEEccC-CCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCEEECcCC
Confidence            4799999999999999999999999996 79988886542    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+|||++.++.++|+|||+++....... .......||..|+|||++.+..++.++|||||||++|||++|..++-....
T Consensus       288 P~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~  367 (461)
T PHA03211        288 TENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASR  367 (461)
T ss_pred             HHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCc
Confidence            9999999999999999999876533221 112245689999999999988899999999999999999998765432221


Q ss_pred             cccccccchhhhhhhhhc-------------cchhhhhhhhhhcCCC----c---HHHHHHHHHHHHHHhhhcCCCCCCC
Q 044155          160 VHDLVCPFSEYLKNCFED-------------NRFTEIVDHIVVEDVS----S---IEKEQQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~li~~cl~~dp~~R  219 (239)
                      ... ..++..........             ................    .   ......+..+.+||.+||+.||.+|
T Consensus       368 ~~~-~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~R  446 (461)
T PHA03211        368 GDE-RRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARR  446 (461)
T ss_pred             ccc-cCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhC
Confidence            110 00000000000000             0000000000000000    0   0001234568899999999999999


Q ss_pred             CCHHHHHH
Q 044155          220 PSMVDVAK  227 (239)
Q Consensus       220 ps~~ell~  227 (239)
                      ||+.|+++
T Consensus       447 Psa~elL~  454 (461)
T PHA03211        447 PSAAELLR  454 (461)
T ss_pred             cCHHHHhh
Confidence            99999986

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1e-36  Score=252.84  Aligned_cols=217  Identities=21%  Similarity=0.240  Sum_probs=159.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+||||+++++++......+++||++. ++|.+++...     ..+++..+..++.|++.||.|||   ..+|+|||||
T Consensus       142 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~-----~~l~~~~~~~i~~ql~~aL~~LH---~~givHrDlk  212 (392)
T PHA03207        142 TISHRAIINLIHAYRWKSTVCMVMPKYK-CDLFTYVDRS-----GPLPLEQAITIQRRLLEALAYLH---GRGIIHRDVK  212 (392)
T ss_pred             hcCCCCccceeeeEeeCCEEEEEehhcC-CCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence            4799999999999999999999999996 7898888543     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++........ .......|++.|+|||++.+..++.++|||||||++|+|++|+.||.....
T Consensus       213 p~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~  292 (392)
T PHA03207        213 TENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQV  292 (392)
T ss_pred             HHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCC
Confidence            9999999999999999999876543322 122345689999999999988899999999999999999999999865432


Q ss_pred             cccccccchhhhhhh------hhccchhhh---hhhh---hhcCCCcH---HHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 044155          160 VHDLVCPFSEYLKNC------FEDNRFTEI---VDHI---VVEDVSSI---EKEQQLHASAQVTFECIKDSPADRPSMVD  224 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~---~~~~~~~~---~~~~~~~~~~~li~~cl~~dp~~Rps~~e  224 (239)
                      .... .......+..      +........   ....   ........   .....+.++.++|.+||..||.+|||+.|
T Consensus       293 ~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e  371 (392)
T PHA03207        293 KSSS-SQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQD  371 (392)
T ss_pred             CCcH-HHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHH
Confidence            1100 0000000000      000000000   0000   00000000   01123567889999999999999999999


Q ss_pred             HHH
Q 044155          225 VAK  227 (239)
Q Consensus       225 ll~  227 (239)
                      ++.
T Consensus       372 ~l~  374 (392)
T PHA03207        372 ILS  374 (392)
T ss_pred             Hhh
Confidence            986

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=2e-36  Score=237.50  Aligned_cols=205  Identities=25%  Similarity=0.431  Sum_probs=161.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC----CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP----HFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +++|+||+++++++......+++|||+++++|.+++......    ....+++..+..++.|++.||.+||   +.+++|
T Consensus        52 ~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H  128 (262)
T cd00192          52 KLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA---SKKFVH  128 (262)
T ss_pred             hcCCCChheeeeeecCCCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHH---cCCccc
Confidence            368999999999999989999999999999999999875210    0156899999999999999999999   999999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVS  154 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~  154 (239)
                      +||||+||+++.++.++|+|||.+........ .......++..|+|||.+....++.++||||||+++|++++ |..||
T Consensus       129 ~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~  208 (262)
T cd00192         129 RDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPY  208 (262)
T ss_pred             CccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999876643321 12234456788999999988889999999999999999999 57887


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      .....                     .+........ .....+...+..+.+++.+||+.+|.+|||+.|++..|+
T Consensus       209 ~~~~~---------------------~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         209 PGLSN---------------------EEVLEYLRKG-YRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             CCCCH---------------------HHHHHHHHcC-CCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence            54321                     0111111111 111112234678899999999999999999999998773

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=2.5e-36  Score=240.07  Aligned_cols=198  Identities=20%  Similarity=0.256  Sum_probs=154.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..++|+||+++++|..++.+..    ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        58 ~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~----~~l~~~~~~~~~~qi~~~L~~LH---~~~i~H~dlk  130 (282)
T cd06643          58 SCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELE----RPLTEPQIRVVCKQTLEALNYLH---ENKIIHRDLK  130 (282)
T ss_pred             HCCCCCeeeEEEEEeeCCEEEEEEEecCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence            3789999999999999999999999999999988876532    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc-----cCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |+||+++.++.++++|||++....... .......++..|+|||++.     ...++.++|+||||+++|+|++|..||.
T Consensus       131 p~nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~  209 (282)
T cd06643         131 AGNILFTLDGDIKLADFGVSAKNTRTI-QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHH  209 (282)
T ss_pred             cccEEEccCCCEEEccccccccccccc-cccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCcc
Confidence            999999999999999999986543221 1223456788999999874     3457789999999999999999998875


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhc-CCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVE-DVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......                     ........ ......+...+..+.++|.+||+.||.+|||+.++++
T Consensus       210 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  261 (282)
T cd06643         210 ELNPMR---------------------VLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQ  261 (282)
T ss_pred             ccCHHH---------------------HHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            432100                     00000000 0000111234567899999999999999999999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-37  Score=250.77  Aligned_cols=194  Identities=22%  Similarity=0.277  Sum_probs=152.7

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+....++||||+++++|.+++...     ..++...+..++.|++.||+|||   +.+++||||||+
T Consensus        54 ~~p~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~~~~~qil~al~~LH---~~~ivHrDlkp~  125 (330)
T cd05586          54 ESPFIVGLKFSFQTDSDLYLVTDYMSGGELFWHLQKE-----GRFSEDRAKFYIAELVLALEHLH---KYDIVYRDLKPE  125 (330)
T ss_pred             CCCcCcceEEEEecCCeEEEEEcCCCCChHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHH
Confidence            6999999999999999999999999999999988765     56889999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      ||+++.++.++|+|||++....... .......|++.|+|||++.+. .++.++||||||+++|+|++|..||.....  
T Consensus       126 Nili~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~--  202 (330)
T cd05586         126 NILLDATGHIALCDFGLSKANLTDN-KTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDT--  202 (330)
T ss_pred             HeEECCCCCEEEecCCcCcCCCCCC-CCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCH--
Confidence            9999999999999999986532221 122345689999999998754 478999999999999999999999853211  


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC----CHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP----SMVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp----s~~ell~  227 (239)
                                         .+....+........ ....+..+.+++.+||+.||.+||    ++.++++
T Consensus       203 -------------------~~~~~~i~~~~~~~~-~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~  252 (330)
T cd05586         203 -------------------QQMYRNIAFGKVRFP-KNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKE  252 (330)
T ss_pred             -------------------HHHHHHHHcCCCCCC-CccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhc
Confidence                               111111111111100 012456778999999999999998    4666654

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.1e-36  Score=235.50  Aligned_cols=201  Identities=23%  Similarity=0.390  Sum_probs=157.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+.+++|.+++....    ..++......++.+++.||.|||   +.+++|+|||
T Consensus        48 ~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~lH---~~~i~h~di~  120 (251)
T cd05041          48 QYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKK----NRLTVKKLLQMSLDAAAGMEYLE---SKNCIHRDLA  120 (251)
T ss_pred             hCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCEehhhcC
Confidence            4789999999999999999999999999999999987643    45788899999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCccee-ecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHIT-DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.++|+|||.+........... .....+..|+|||.+.+..++.++|+||||+++|++++ |..||....
T Consensus       121 p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~  200 (251)
T cd05041         121 ARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS  200 (251)
T ss_pred             cceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCC
Confidence            9999999999999999999865432211111 12233567999999988889999999999999999999 667764322


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      ..                  ........    ......+...+..+.+++.+||..+|.+|||+.|+++.|+
T Consensus       201 ~~------------------~~~~~~~~----~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         201 NQ------------------QTRERIES----GYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             HH------------------HHHHHHhc----CCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence            10                  00001100    0011111244567899999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.6e-36  Score=238.19  Aligned_cols=193  Identities=20%  Similarity=0.353  Sum_probs=150.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++.||||+++++++..+...++||||+++|+|.+++....    ..+++..++.++.|++.||+|||   +.+++|+|||
T Consensus        55 ~~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dlk  127 (258)
T cd05078          55 QLSHKHLVLNYGVCVCGDESIMVQEYVKFGSLDTYLKKNK----NLINISWKLEVAKQLAWALHFLE---DKGLTHGNVC  127 (258)
T ss_pred             hCCCCChhheeeEEEeCCCcEEEEecCCCCcHHHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCc
Confidence            4689999999999999899999999999999999997653    35788999999999999999999   9999999999


Q ss_pred             CcceeecCCCc--------eeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCC
Q 044155           81 TSCILFNEENV--------AKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        81 ~~nil~~~~~~--------~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      |+||+++.++.        ++++|||.+.....     .....++..|+|||.+.+. .++.++|+||||+++|++++|.
T Consensus       128 p~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~  202 (258)
T cd05078         128 AKNVLLIREEDRKTGNPPFIKLSDPGISITVLP-----KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGG  202 (258)
T ss_pred             cceEEEecccccccCCCceEEecccccccccCC-----chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCC
Confidence            99999988765        58999998754422     2234577889999999864 4788999999999999999995


Q ss_pred             -CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          152 -DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       152 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                       .|+.......                  .......  ....    +.....++.+++.+||+.||.+|||++++++.|
T Consensus       203 ~~~~~~~~~~~------------------~~~~~~~--~~~~----~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l  257 (258)
T cd05078         203 DKPLSALDSQK------------------KLQFYED--RHQL----PAPKWTELANLINQCMDYEPDFRPSFRAIIRDL  257 (258)
T ss_pred             CCChhhccHHH------------------HHHHHHc--cccC----CCCCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence             4433211000                  0000000  0001    112235688999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=3.3e-36  Score=238.51  Aligned_cols=193  Identities=21%  Similarity=0.309  Sum_probs=149.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++....    ..++...+..++.|++.||+|||   +++++|+|||
T Consensus        72 ~l~h~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlk  144 (274)
T cd05076          72 QVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEK----GRVPVAWKITVAQQLASALSYLE---DKNLVHGNVC  144 (274)
T ss_pred             cCCCCCeeeEEEEEEeCCceEEEEecCCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---cCCccCCCCC
Confidence            4789999999999999999999999999999988886542    46788999999999999999999   9999999999


Q ss_pred             CcceeecCCC-------ceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHh-cCC
Q 044155           81 TSCILFNEEN-------VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELL-TGW  151 (239)
Q Consensus        81 ~~nil~~~~~-------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~-~g~  151 (239)
                      |+||+++..+       .++++|||.+......     ....++..|+|||.+.+ ..++.++|+||||+++|+++ +|.
T Consensus       145 p~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~-----~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~  219 (274)
T cd05076         145 AKNILLARLGLAEGTSPFIKLSDPGVSFTALSR-----EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGE  219 (274)
T ss_pred             cccEEEeccCcccCccceeeecCCccccccccc-----cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence            9999997643       3799999987543211     12346788999998865 56889999999999999984 687


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      .||........         .         ......  ....    ......+.+++.+||+.+|++|||+.++++.|
T Consensus       220 ~p~~~~~~~~~---------~---------~~~~~~--~~~~----~~~~~~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         220 VPLKERTPSEK---------E---------RFYEKK--HRLP----EPSCKELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             CCccccChHHH---------H---------HHHHhc--cCCC----CCCChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence            77753221000         0         000000  0000    01234688999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=2.6e-36  Score=237.28  Aligned_cols=202  Identities=21%  Similarity=0.357  Sum_probs=158.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++.+ ...+++|||+++++|.+++.....   ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        57 ~l~~~~i~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~  129 (260)
T cd05073          57 TLQHDKLVKLHAVVTK-EPIYIITEFMAKGSLLDFLKSDEG---SKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLR  129 (260)
T ss_pred             hcCCCCcceEEEEEcC-CCeEEEEEeCCCCcHHHHHHhCCc---cccCHHHHHHHHHHHHHHHHHHH---hCCccccccC
Confidence            4789999999999877 678999999999999999976533   45778889999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+...............++..|+|||++....++.++|+||||+++|++++ |..||.....
T Consensus       130 p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~  209 (260)
T cd05073         130 AANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN  209 (260)
T ss_pred             cceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCH
Confidence            999999999999999999887654332222223345677999999988889999999999999999998 8888753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .                     ....... ...........+..+.+++.+||..+|.+||++.++++.|+.
T Consensus       210 ~---------------------~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         210 P---------------------EVIRALE-RGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             H---------------------HHHHHHh-CCCCCCCcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            0                     0000000 000001112445678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5.9e-37  Score=252.11  Aligned_cols=195  Identities=20%  Similarity=0.297  Sum_probs=160.6

Q ss_pred             CCCcccceeeEEEEeCCC--ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            2 MSHNHILKLIGCCLETPI--PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~--~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      |+||||+++|.+|.+...  ..+|+|++..|+|+.+.++.     .++..+..+.|+.||++||.|||+. ..+|+||||
T Consensus        98 L~H~NIirfy~SW~d~~n~~in~iTEL~TSGtLr~Y~kk~-----~~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDL  171 (632)
T KOG0584|consen   98 LKHPNIIRFYDSWVDTDNKTINFITELFTSGTLREYRKKH-----RRVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDL  171 (632)
T ss_pred             CCCCceeeeeeheecCCCceeeeeeecccCCcHHHHHHHh-----ccCCHHHHHHHHHHHHHHhhhhhcC-CCCcccccc
Confidence            799999999999987654  67899999999999999987     6788899999999999999999964 668999999


Q ss_pred             cCcceeecCC-CceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           80 KTSCILFNEE-NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        80 k~~nil~~~~-~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |.+||+|+.+ |.|||+|+|+|.....+.   .....|||.|||||+.. ..|++..||||||+.++||+|+..||.+-.
T Consensus       172 KCDNIFinG~~G~VKIGDLGLAtl~r~s~---aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~  247 (632)
T KOG0584|consen  172 KCDNIFVNGNLGEVKIGDLGLATLLRKSH---AKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECT  247 (632)
T ss_pred             ccceEEEcCCcCceeecchhHHHHhhccc---cceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhC
Confidence            9999999875 799999999998765432   22467999999999998 889999999999999999999999985432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                    ...++.++..+........-..+++++||..|+.. .++|||+.|+|.
T Consensus       248 n--------------------~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  248 N--------------------PAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             C--------------------HHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHHHhh
Confidence            1                    12333344443332222223357789999999999 999999999986

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-37  Score=254.23  Aligned_cols=207  Identities=23%  Similarity=0.390  Sum_probs=164.4

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +|.||+-+.|+|...+. .||+.+|+|.+|+.+++...    ..+.....+.|+.|+++|+.|||   +++|+|+|||..
T Consensus       446 RH~NIlLFMG~~~~p~~-AIiTqwCeGsSLY~hlHv~e----tkfdm~~~idIAqQiaqGM~YLH---AK~IIHrDLKSn  517 (678)
T KOG0193|consen  446 RHENILLFMGACMNPPL-AIITQWCEGSSLYTHLHVQE----TKFDMNTTIDIAQQIAQGMDYLH---AKNIIHRDLKSN  517 (678)
T ss_pred             chhhheeeehhhcCCce-eeeehhccCchhhhhccchh----hhhhHHHHHHHHHHHHHhhhhhh---hhhhhhhhcccc
Confidence            79999999999987776 99999999999999998764    67889999999999999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCCC-CcceeecccccccccCcccccc---CCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEG-ETHITDTVMGTLGYCAPEYMRT---GVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      ||++.+++.|||+|||++...... .........|...|||||++..   .+|++.+||||||+++|||++|..||. ..
T Consensus       518 NIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPys-i~  596 (678)
T KOG0193|consen  518 NIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYS-IQ  596 (678)
T ss_pred             ceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcC-CC
Confidence            999999999999999997543221 1222345567889999998864   469999999999999999999999986 22


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      .-+....          .-+.       .....-......+.+.++++|+..||.+++++||++.+|+..|+++...
T Consensus       597 ~~dqIif----------mVGr-------G~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~~  656 (678)
T KOG0193|consen  597 NRDQIIF----------MVGR-------GYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLPS  656 (678)
T ss_pred             ChhheEE----------Eecc-------cccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhhc
Confidence            1111110          0000       0000111122346778999999999999999999999999999988764

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=1.5e-36  Score=237.90  Aligned_cols=201  Identities=23%  Similarity=0.406  Sum_probs=156.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++++||+++++|.+++....    ..+++..+..++.|++.|+++||   +.+++|+|||
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~dl~  127 (256)
T cd05112          55 KLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQR----GKFSQETLLGMCLDVCEGMAYLE---SSNVIHRDLA  127 (256)
T ss_pred             hCCCCCeeeEEEEEccCCceEEEEEcCCCCcHHHHHHhCc----cCCCHHHHHHHHHHHHHHHHHHH---HCCccccccc
Confidence            4789999999999999999999999999999999987543    35788899999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+...............++..|+|||.+.+..++.++|+||||+++|++++ |..||.....
T Consensus       128 p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~  207 (256)
T cd05112         128 ARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSN  207 (256)
T ss_pred             cceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCH
Confidence            999999999999999999886543322111122334678999999988889999999999999999998 8888753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                                           .+........ .....+...+..+.+++.+||..+|.+|||+.++++.|+
T Consensus       208 ---------------------~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l~  256 (256)
T cd05112         208 ---------------------SEVVETINAG-FRLYKPRLASQSVYELMQHCWKERPEDRPSFSLLLHQLA  256 (256)
T ss_pred             ---------------------HHHHHHHhCC-CCCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHhhC
Confidence                                 0011110000 000001123467899999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.4e-37  Score=252.87  Aligned_cols=197  Identities=15%  Similarity=0.230  Sum_probs=154.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++...++||||+++|+|.+++...     ..+++..++.++.|++.||.|||   +.+++|||||
T Consensus        57 ~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlk  128 (364)
T cd05599          57 EADNPWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKK-----DTFTEEETRFYIAETILAIDSIH---KLGYIHRDIK  128 (364)
T ss_pred             hCCCCCCcceEEEEEcCCeEEEEECCCCCcHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCC
Confidence            368999999999999999999999999999999999765     56889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc-------------------------------------eeecccccccccCc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH-------------------------------------ITDTVMGTLGYCAP  123 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~-------------------------------------~~~~~~~~~~y~aP  123 (239)
                      |+|||++.++.++|+|||++.........                                     ......||+.|+||
T Consensus       129 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  208 (364)
T cd05599         129 PDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAP  208 (364)
T ss_pred             HHHeEECCCCCEEEeecccceeccccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCH
Confidence            99999999999999999998654211100                                     00123589999999


Q ss_pred             cccccCCcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhc--CCCcHHHHHHH
Q 044155          124 EYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVE--DVSSIEKEQQL  201 (239)
Q Consensus       124 E~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  201 (239)
                      |++....++.++|||||||++|+|++|..||......                     +........  ....+.....+
T Consensus       209 E~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~---------------------~~~~~i~~~~~~~~~~~~~~~s  267 (364)
T cd05599         209 EVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQ---------------------ETYRKIINWKETLQFPDEVPLS  267 (364)
T ss_pred             HHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHH---------------------HHHHHHHcCCCccCCCCCCCCC
Confidence            9999888999999999999999999999998643211                     000001000  00000001335


Q ss_pred             HHHHHHHhhhcCCCCCCCCC---HHHHHH
Q 044155          202 HASAQVTFECIKDSPADRPS---MVDVAK  227 (239)
Q Consensus       202 ~~~~~li~~cl~~dp~~Rps---~~ell~  227 (239)
                      +.+.++|.+|+. +|.+|++   ++++++
T Consensus       268 ~~~~~li~~ll~-~p~~R~~~~~~~~ll~  295 (364)
T cd05599         268 PEAKDLIKRLCC-EAERRLGNNGVNEIKS  295 (364)
T ss_pred             HHHHHHHHHHcc-CHhhcCCCCCHHHHhc
Confidence            678899999997 9999998   888876

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.1e-36  Score=236.08  Aligned_cols=201  Identities=21%  Similarity=0.262  Sum_probs=157.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++...+++|||+.+++|.+++....    ..++...+..++.|++.||.|||   +.+++|+||+
T Consensus        56 ~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~l~~~~~~~~----~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~  128 (262)
T cd06613          56 ECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTR----GPLSELQIAYVCRETLKGLAYLH---ETGKIHRDIK  128 (262)
T ss_pred             hCCCCChhceEEEEEeCCEEEEEEeCCCCCcHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHH---hCCceecCCC
Confidence            4799999999999999999999999999999999887642    45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC---CcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG---VFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~---~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||.+....... .......++..|+|||...+.   .++.++|+||||+++|+|++|..||...
T Consensus       129 p~ni~i~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~  207 (262)
T cd06613         129 GANILLTEDGDVKLADFGVSAQLTATI-AKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDL  207 (262)
T ss_pred             hhhEEECCCCCEEECccccchhhhhhh-hccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999886543221 112334578889999998776   7889999999999999999999987532


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......                 ......... ..........+..+.+++.+||..+|.+|||+.+++.
T Consensus       208 ~~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         208 HPMRAL-----------------FLISKSNFP-PPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             CHHHHH-----------------HHHHhccCC-CccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            211000                 000000000 0001112345677899999999999999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=8.8e-37  Score=240.72  Aligned_cols=202  Identities=19%  Similarity=0.237  Sum_probs=155.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|+|
T Consensus        62 ~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~  133 (267)
T cd06646          62 ECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVT-----GPLSELQIAYVCRETLQGLAYLH---SKGKMHRDIK  133 (267)
T ss_pred             hcCCCCeeeeeEEEEeCCEEEEEEeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence            468999999999999999999999999999999988754     56789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc---cCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR---TGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++....... .......+++.|+|||.+.   ...++.++|+||||+++|+|++|..||...
T Consensus       134 p~nill~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~  212 (267)
T cd06646         134 GANILLTDNGDVKLADFGVAAKITATI-AKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDL  212 (267)
T ss_pred             HHHEEECCCCCEEECcCccceeecccc-cccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCcccc
Confidence            999999999999999999987653221 1123345788999999875   344778999999999999999999887533


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      .........         ..        ...... ........+..+.+++.+||..+|++|||++++++.|
T Consensus       213 ~~~~~~~~~---------~~--------~~~~~~-~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         213 HPMRALFLM---------SK--------SNFQPP-KLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             chhhhheee---------ec--------CCCCCC-CCccccccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence            211110000         00        000000 0000113456788999999999999999999998743

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=1.8e-36  Score=242.33  Aligned_cols=212  Identities=22%  Similarity=0.333  Sum_probs=158.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCC------CCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPH------FEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~------~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++..+...+++||++++++|.+++.......      ...+++..+..++.|++.||+|||   +.++
T Consensus        75 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH---~~~i  151 (296)
T cd05051          75 RLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE---SLNF  151 (296)
T ss_pred             hcCCCCEeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHH---HcCc
Confidence            4789999999999999999999999999999999997653211      126889999999999999999999   8999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc--CC
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT--GW  151 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~--g~  151 (239)
                      +|+||||+||+++.++.++|+|||++........ .......+++.|+|||.+.+..++.++||||||+++|++++  +.
T Consensus       152 ~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~  231 (296)
T cd05051         152 VHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCRE  231 (296)
T ss_pred             cccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCC
Confidence            9999999999999999999999999865433221 11223345778999999988889999999999999999998  55


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      .||.........     ......+....          .......+...+.++.+++.+||+.||.+|||+.++++.|+
T Consensus       232 ~p~~~~~~~~~~-----~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         232 QPYEHLTDQQVI-----ENAGHFFRDDG----------RQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             CCCCCcChHHHH-----HHHHhcccccc----------ccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence            666432210000     00000000000          00000001133467899999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.1e-38  Score=244.03  Aligned_cols=218  Identities=21%  Similarity=0.248  Sum_probs=160.3

Q ss_pred             CCCCcccceeeEEEEeCC-----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLETP-----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~-----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      ++.|||||++.-+|....     ...+||||++ .+|.++++..... ...++...++-+..||..||+|||   ..+|+
T Consensus        73 ~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP-~tL~~~~r~~~~~-~~~mp~~~iKLYt~Qlfrgl~yLh---~~~Ic  147 (364)
T KOG0658|consen   73 KLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMP-ETLYRVIRHYTRA-NQRMPLLEIKLYTYQLFRGLAYLH---SHGIC  147 (364)
T ss_pred             hcCCcCeeeEEEEEEecCCCchhHHHHHHHhch-HHHHHHHHHHhhc-CCCCceeeeHHHHHHHHHHHHHHH---hcCcc
Confidence            478999999988887443     2358999998 8999999853211 167888888899999999999999   89999


Q ss_pred             eccccCcceeecCC-CceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCC
Q 044155           76 FRNFKTSCILFNEE-NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        76 H~dlk~~nil~~~~-~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      ||||||.|+|++.+ |.+||+|||.|+....+..  ......|..|+|||.+.+. .|+.+.||||.||++.||+-|++.
T Consensus       148 HRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~ep--niSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~pl  225 (364)
T KOG0658|consen  148 HRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEP--NISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPL  225 (364)
T ss_pred             cCCCChheEEEcCCCCeEEeccCCcceeeccCCC--ceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcc
Confidence            99999999999987 8999999999988765543  3466688999999999875 599999999999999999999999


Q ss_pred             ccccccccccccc-------chhhhhhhhhccchhhhhhhhhhcCC-CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 044155          154 SDLVKDVHDLVCP-------FSEYLKNCFEDNRFTEIVDHIVVEDV-SSIEKEQQLHASAQVTFECIKDSPADRPSMVDV  225 (239)
Q Consensus       154 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~el  225 (239)
                      |.+..........       -.+.....-.  ...+.-.+.+.... ........+++..+|+.+++.++|.+|.|+.|+
T Consensus       226 FpG~s~~dQL~eIik~lG~Pt~e~I~~mn~--~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~  303 (364)
T KOG0658|consen  226 FPGDSSVDQLVEIIKVLGTPTREDIKSMNP--NYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEA  303 (364)
T ss_pred             cCCCCHHHHHHHHHHHhCCCCHHHHhhcCc--ccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHH
Confidence            9875443222111       1111110000  00000001111111 111233556788999999999999999999998


Q ss_pred             HH
Q 044155          226 AK  227 (239)
Q Consensus       226 l~  227 (239)
                      +.
T Consensus       304 l~  305 (364)
T KOG0658|consen  304 LA  305 (364)
T ss_pred             hc
Confidence            85

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=2.7e-36  Score=236.44  Aligned_cols=199  Identities=24%  Similarity=0.343  Sum_probs=161.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++.+....+++|||+++++|.+++.....   ..++...+..++.|++.||.|||   +.+++|+||+
T Consensus        55 ~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~  128 (256)
T cd08221          55 LLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKG---QLFEEEMVLWYLFQIVSAVSYIH---KAGILHRDIK  128 (256)
T ss_pred             hCCCCCeeEEEeEEecCCeEEEEEEecCCCcHHHHHHhccc---cCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCC
Confidence            47899999999999999999999999999999999976532   46789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.+||+|||.+........ ......+++.|.|||.+.+..++.++|+||||+++|+|++|..||....  
T Consensus       129 p~ni~~~~~~~~kl~d~~~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~--  205 (256)
T cd08221         129 TLNIFLTKAGLIKLGDFGISKILGSEYS-MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATN--  205 (256)
T ss_pred             hHhEEEeCCCCEEECcCcceEEcccccc-cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCC--
Confidence            9999999999999999999876533221 2334567899999999988888999999999999999999988874321  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                                         ..+............ .....+..+.+++.+||..+|.+|||+.++++.
T Consensus       206 -------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~  253 (256)
T cd08221         206 -------------------PLNLVVKIVQGNYTP-VVSVYSSELISLVHSLLQQDPEKRPTADEVLDQ  253 (256)
T ss_pred             -------------------HHHHHHHHHcCCCCC-CccccCHHHHHHHHHHcccCcccCCCHHHHhhC
Confidence                               111111111121111 113456778999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.5e-36  Score=241.89  Aligned_cols=215  Identities=20%  Similarity=0.246  Sum_probs=153.4

Q ss_pred             CCCcccceeeEEEEeC-----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            2 MSHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         2 l~H~niv~l~~~~~~~-----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      ++||||+++++++...     ...+++||++. ++|.+++.....   ..++...+..++.|++.||.|||   +.+++|
T Consensus        59 ~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH---~~~ivH  131 (288)
T cd07863          59 FDHPNIVRLMDVCATSRTDRETKVTLVFEHVD-QDLRTYLDKVPP---PGLPAETIKDLMRQFLRGLDFLH---ANCIVH  131 (288)
T ss_pred             cCCCCeeeeeeeeccccCCCCceEEEEEcccc-cCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeec
Confidence            5799999999988643     34689999997 689888876432   45889999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      +||||+||+++.++.++|+|||++.......  ......++..|+|||++.+..++.++||||||+++|+|++|..||..
T Consensus       132 ~dikp~Nili~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~  209 (288)
T cd07863         132 RDLKPENILVTSGGQVKLADFGLARIYSCQM--ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCG  209 (288)
T ss_pred             CCCCHHHEEECCCCCEEECccCccccccCcc--cCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCC
Confidence            9999999999999999999999987553221  12234578899999999888899999999999999999999998854


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhh---hhhh-cCCCc--HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVD---HIVV-EDVSS--IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ............ .... .....+.....   .... .....  ......+..+.+++.+||+.||.+|||+.|++.
T Consensus       210 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         210 NSEADQLGKIFD-LIGL-PPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             CCHHHHHHHHHH-HhCC-CChhhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            322111000000 0000 00000000000   0000 00000  011134567889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=8.5e-37  Score=252.65  Aligned_cols=142  Identities=23%  Similarity=0.268  Sum_probs=127.5

Q ss_pred             cccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcce
Q 044155            5 NHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCI   84 (239)
Q Consensus         5 ~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~ni   84 (239)
                      -|+|+++++|...++.|||+|++. -+|+++++.+..   ..++...++.++.||+.||.+||   +.+|+|+||||+||
T Consensus       248 ~n~Vrm~d~F~fr~HlciVfELL~-~NLYellK~n~f---~Glsl~~ir~~~~Qil~~L~~L~---~l~IIHcDLKPENI  320 (586)
T KOG0667|consen  248 YNIVRMLDYFYFRNHLCIVFELLS-TNLYELLKNNKF---RGLSLPLVRKFAQQILTALLFLH---ELGIIHCDLKPENI  320 (586)
T ss_pred             eeEEEeeeccccccceeeeehhhh-hhHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCChhhe
Confidence            489999999999999999999997 899999998865   77999999999999999999999   99999999999999


Q ss_pred             eecCCC--ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           85 LFNEEN--VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        85 l~~~~~--~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+.+.+  .+||+|||.+........    ....+..|+|||++++.+|+.+.||||||||+.||++|.+.|.+-
T Consensus       321 LL~~~~r~~vKVIDFGSSc~~~q~vy----tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~  391 (586)
T KOG0667|consen  321 LLKDPKRSRIKVIDFGSSCFESQRVY----TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD  391 (586)
T ss_pred             eeccCCcCceeEEecccccccCCcce----eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCC
Confidence            997654  689999999876543322    566788999999999999999999999999999999998777643

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=3.6e-36  Score=235.60  Aligned_cols=198  Identities=23%  Similarity=0.387  Sum_probs=155.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+ .+++|||+++++|.+++.....   ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        55 ~~~~~~i~~~~~~~~~~~-~~~v~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~al~~lH---~~~~~H~dl~  127 (254)
T cd05083          55 KLHHKNLVRLLGVILHNG-LYIVMELMSKGNLVNFLRTRGR---ALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLA  127 (254)
T ss_pred             hCCCCCcCeEEEEEcCCC-cEEEEECCCCCCHHHHHHhcCc---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccC
Confidence            478999999999986654 6899999999999999976532   45788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+.......    .....+..|+|||.+.+..++.++|+||||+++|+|++ |..||.....
T Consensus       128 p~nili~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~  203 (254)
T cd05083         128 ARNILVSEDGVAKVSDFGLARVGSMGV----DNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSL  203 (254)
T ss_pred             cceEEEcCCCcEEECCCccceeccccC----CCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCH
Confidence            999999999999999999886543221    12234567999999988889999999999999999997 8888753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                                           .+........ .........+..+.+++.+||+.+|.+|||++++++.|++
T Consensus       204 ---------------------~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         204 ---------------------KEVKECVEKG-YRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             ---------------------HHHHHHHhCC-CCCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence                                 0000010001 0000112445678899999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=2.5e-36  Score=250.19  Aligned_cols=208  Identities=17%  Similarity=0.309  Sum_probs=158.8

Q ss_pred             CC-CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC--------------------------------------
Q 044155            2 MS-HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP--------------------------------------   42 (239)
Q Consensus         2 l~-H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~--------------------------------------   42 (239)
                      +. ||||+++++++...+..++||||+++|+|.++++.....                                      
T Consensus        97 l~~H~niv~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (401)
T cd05107          97 LGPHLNIVNLLGACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDG  176 (401)
T ss_pred             cCCCCCeEEEEEEEccCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCc
Confidence            55 999999999999999999999999999999999754210                                      


Q ss_pred             -------------------------------------------------------CCCcCCHHHHHHHHHHHHHHHhHHh
Q 044155           43 -------------------------------------------------------HFEPLLLKHRLKIAMDIVHALAYLH   67 (239)
Q Consensus        43 -------------------------------------------------------~~~~~~~~~~~~~~~~i~~~l~~LH   67 (239)
                                                                             ....+++.....++.|++.||.|||
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH  256 (401)
T cd05107         177 GYMDMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLA  256 (401)
T ss_pred             cccccCCccccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence                                                                   0023566678889999999999999


Q ss_pred             hCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHH
Q 044155           68 FGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFE  146 (239)
Q Consensus        68 ~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~  146 (239)
                         +.+++|+||||+||+++.++.++|+|||++........ .......++..|+|||.+....++.++|+||||+++||
T Consensus       257 ---~~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e  333 (401)
T cd05107         257 ---SKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWE  333 (401)
T ss_pred             ---cCCcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHH
Confidence               89999999999999999999999999999875422111 11123346788999999988889999999999999999


Q ss_pred             Hhc-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 044155          147 LLT-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV  225 (239)
Q Consensus       147 ~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~el  225 (239)
                      |++ |..||.......                     .....+........+...+..+.+++.+||..+|.+|||+++|
T Consensus       334 ~l~~g~~P~~~~~~~~---------------------~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~el  392 (401)
T cd05107         334 IFTLGGTPYPELPMNE---------------------QFYNAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQL  392 (401)
T ss_pred             HHHcCCCCCCCCCchH---------------------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence            998 777774322100                     0000000000001111345678999999999999999999999


Q ss_pred             HHHHHHHH
Q 044155          226 AKKLRQIY  233 (239)
Q Consensus       226 l~~L~~l~  233 (239)
                      ++.|++++
T Consensus       393 l~~L~~~~  400 (401)
T cd05107         393 VHLVGDLL  400 (401)
T ss_pred             HHHHHHHh
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=4e-36  Score=237.14  Aligned_cols=206  Identities=25%  Similarity=0.417  Sum_probs=158.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC--CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP--HFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++......++||||+++++|.+++......  ....+++..+..++.|++.||.|||   +.+++|+|
T Consensus        55 ~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~d  131 (269)
T cd05044          55 NFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLE---QMHFIHRD  131 (269)
T ss_pred             hcCCCCeeeEeeeecCCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHH---hCCcccCC
Confidence            478999999999999888999999999999999999754221  1134678899999999999999999   89999999


Q ss_pred             ccCcceeecCCC-----ceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CC
Q 044155           79 FKTSCILFNEEN-----VAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GW  151 (239)
Q Consensus        79 lk~~nil~~~~~-----~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~  151 (239)
                      |||+||+++.++     .++++|||++........ .......++..|+|||.+.+..++.++||||||+++|+|++ |.
T Consensus       132 l~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~  211 (269)
T cd05044         132 LAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQ  211 (269)
T ss_pred             CChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCC
Confidence            999999999887     899999999865432211 11223345678999999998889999999999999999998 88


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||......                     +......... ........+..+.+++.+||..+|.+|||++++++.|++
T Consensus       212 ~p~~~~~~~---------------------~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         212 QPYPALNNQ---------------------EVLQHVTAGG-RLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             CCCcccCHH---------------------HHHHHHhcCC-ccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            887532210                     0000000000 001112445778999999999999999999999998863

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=1.3e-36  Score=249.94  Aligned_cols=148  Identities=19%  Similarity=0.307  Sum_probs=129.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+.+....++||||+++|+|.+++...     ..++...++.++.|++.||.|||   +++|+|||||
T Consensus        57 ~~~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~lH---~~givHrDlK  128 (363)
T cd05628          57 EADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKK-----DTLTEEETQFYIAETVLAIDSIH---QLGFIHRDIK  128 (363)
T ss_pred             hCCCCCcceEEEEEecCCeEEEEEcCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCC
Confidence            368999999999999999999999999999999999765     56889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc----------------------------------ceeecccccccccCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET----------------------------------HITDTVMGTLGYCAPEYM  126 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~----------------------------------~~~~~~~~~~~y~aPE~~  126 (239)
                      |+|||++.++.++|+|||++........                                  .......||+.|+|||++
T Consensus       129 p~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~  208 (363)
T cd05628         129 PDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVF  208 (363)
T ss_pred             HHHeEECCCCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHH
Confidence            9999999999999999999865321100                                  001234689999999999


Q ss_pred             ccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155          127 RTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus       127 ~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      .+..++.++|+|||||++|+|++|..||..
T Consensus       209 ~~~~~~~~~DvwSlGvil~ell~G~~Pf~~  238 (363)
T cd05628         209 MQTGYNKLCDWWSLGVIMYEMLIGYPPFCS  238 (363)
T ss_pred             cCCCCCCchhhhhhHHHHHHHHhCCCCCCC
Confidence            988899999999999999999999999853

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-36  Score=241.69  Aligned_cols=213  Identities=20%  Similarity=0.313  Sum_probs=157.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-------CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-------HFEPLLLKHRLKIAMDIVHALAYLHFGFPRP   73 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~   73 (239)
                      +++||||+++++++......++||||+++++|.+++......       ....+++..++.++.|++.||+|||   +.+
T Consensus        73 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~  149 (295)
T cd05097          73 RLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLA---SLN  149 (295)
T ss_pred             hCCCCCcCeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHH---hcC
Confidence            478999999999999999999999999999999998653210       0124678889999999999999999   999


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc--C
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT--G  150 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~--g  150 (239)
                      ++|+||||+||+++.++.+||+|||++........ .......++..|+|||.+....++.++|+||||+++++|++  +
T Consensus       150 i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~  229 (295)
T cd05097         150 FVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCK  229 (295)
T ss_pred             eeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999865433221 11223345678999999988889999999999999999998  4


Q ss_pred             CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      ..||.........        ...      .+........... ......+..+.+++.+||..||++|||++++++.|+
T Consensus       230 ~~p~~~~~~~~~~--------~~~------~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         230 EQPYSLLSDEQVI--------ENT------GEFFRNQGRQIYL-SQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             CCCCcccChHHHH--------HHH------HHhhhhccccccC-CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            4565432211000        000      0000000000000 001123467999999999999999999999999886


Q ss_pred             H
Q 044155          231 Q  231 (239)
Q Consensus       231 ~  231 (239)
                      +
T Consensus       295 ~  295 (295)
T cd05097         295 E  295 (295)
T ss_pred             C
Confidence            3

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=2.4e-36  Score=243.19  Aligned_cols=216  Identities=18%  Similarity=0.228  Sum_probs=155.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..++..++||||++ ++|.+++....    ..++...+..++.|++.||+|||   +.+++|||||
T Consensus        60 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~dlk  131 (309)
T cd07872          60 DLKHANIVTLHDIVHTDKSLTLVFEYLD-KDLKQYMDDCG----NIMSMHNVKIFLYQILRGLAYCH---RRKVLHRDLK  131 (309)
T ss_pred             hCCCCCcceEEEEEeeCCeEEEEEeCCC-CCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            4789999999999999999999999997 68888886542    45788889999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++....... .......+++.|+|||.+.+ ..++.++||||||+++|+|++|..||.....
T Consensus       132 p~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~  210 (309)
T cd07872         132 PQNLLINERGELKLADFGLARAKSVPT-KTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTV  210 (309)
T ss_pred             HHHEEECCCCCEEECccccceecCCCc-cccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence            999999999999999999986543221 11223456889999998865 4588999999999999999999999865432


Q ss_pred             cccccccchhhhhhhhhccchhhhhh-----hhhhcCCC--c--HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVD-----HIVVEDVS--S--IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......... ....+ ....+.....     ........  .  ......+..+.+++.+||+.||.+|||+.|+++
T Consensus       211 ~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  285 (309)
T cd07872         211 EDELHLIFR-LLGTP-TEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK  285 (309)
T ss_pred             HHHHHHHHH-HhCCC-CHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence            111100000 00000 0000000000     00000000  0  011134567889999999999999999999987

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=3.4e-36  Score=240.00  Aligned_cols=208  Identities=18%  Similarity=0.337  Sum_probs=158.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----HFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++......++||||+++|+|.+++......     .....+...+..++.|++.||.|||   +++++
T Consensus        65 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~  141 (288)
T cd05061          65 GFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFV  141 (288)
T ss_pred             hCCCCCeeeEEEEEcCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCCc
Confidence            468999999999999888999999999999999999753211     1134567788899999999999999   99999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCC
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDV  153 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p  153 (239)
                      |+||||+||+++.++.++|+|||+++........ ......++..|+|||.+.+..++.++|+||||+++|++++ |..|
T Consensus       142 H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p  221 (288)
T cd05061         142 HRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQP  221 (288)
T ss_pred             CCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999998654322211 1122334677999999988889999999999999999998 6667


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      |.....                     .+............ .+...+..+.+++.+||+.||.+|||+.++++.|++..
T Consensus       222 ~~~~~~---------------------~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~  279 (288)
T cd05061         222 YQGLSN---------------------EQVLKFVMDGGYLD-QPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL  279 (288)
T ss_pred             CCCCCH---------------------HHHHHHHHcCCCCC-CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence            643221                     01111111111000 01133467999999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=3.1e-36  Score=241.94  Aligned_cols=205  Identities=22%  Similarity=0.349  Sum_probs=158.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++... ..++++||+++|+|.+++....    ..++...+..++.|++.||.|||   +++++|+|||
T Consensus        65 ~l~h~niv~~~~~~~~~-~~~~v~e~~~~g~l~~~~~~~~----~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dik  136 (303)
T cd05110          65 SMDHPHLVRLLGVCLSP-TIQLVTQLMPHGCLLDYVHEHK----DNIGSQLLLNWCVQIAKGMMYLE---ERRLVHRDLA  136 (303)
T ss_pred             hCCCCCcccEEEEEcCC-CceeeehhcCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHh---hcCeeccccc
Confidence            47899999999998754 4678999999999999987643    45788899999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.+||+|||++......... ......++..|+|||.+.+..++.++||||||+++|++++ |..||....
T Consensus       137 p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~  216 (303)
T cd05110         137 ARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP  216 (303)
T ss_pred             cceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999998765332211 1122335678999999988889999999999999999997 878875321


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ..                  ...+...    ...........+..+.+++..||..+|.+|||++++++.|.++...
T Consensus       217 ~~------------------~~~~~~~----~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~  271 (303)
T cd05110         217 TR------------------EIPDLLE----KGERLPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARD  271 (303)
T ss_pred             HH------------------HHHHHHH----CCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            00                  0001110    0000000112345678999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=4.9e-36  Score=235.27  Aligned_cols=192  Identities=23%  Similarity=0.379  Sum_probs=151.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.. ...++||||+++++|.+++....    ..++...+..++.|++.||+|||   +++++|+|||
T Consensus        57 ~l~h~~i~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dlk  128 (259)
T cd05037          57 QLSHKHLVKLYGVCVR-DENIMVEEYVKFGPLDVFLHREK----NNVSLHWKLDVAKQLASALHYLE---DKKLVHGNVC  128 (259)
T ss_pred             cCCCcchhheeeEEec-CCcEEEEEcCCCCcHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHh---hCCeecccCc
Confidence            4789999999999988 77899999999999999998653    36889999999999999999999   9999999999


Q ss_pred             CcceeecCCC-------ceeEcccccccccCCCCcceeecccccccccCccccccC--CcccccchhhhhhHHHHHhcC-
Q 044155           81 TSCILFNEEN-------VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG--VFNEKSNVFSFSVFLFELLTG-  150 (239)
Q Consensus        81 ~~nil~~~~~-------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~~~Di~slG~~l~~~~~g-  150 (239)
                      |+||+++.++       .++|+|||++.....     .....++..|+|||++.+.  .++.++|+||||+++|++++| 
T Consensus       129 p~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~  203 (259)
T cd05037         129 GKNILVARYGLNEGYVPFIKLSDPGIPITVLS-----REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNG  203 (259)
T ss_pred             cceEEEecCccccCCceeEEeCCCCccccccc-----ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCC
Confidence            9999999887       799999999876533     1233466789999999876  688999999999999999995 


Q ss_pred             CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      ..|+...... ..        .....            .....+   ......+.+++.+||..+|.+|||+.++++.|
T Consensus       204 ~~p~~~~~~~-~~--------~~~~~------------~~~~~~---~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l  258 (259)
T cd05037         204 EEPLSTLSSS-EK--------ERFYQ------------DQHRLP---MPDCAELANLINQCWTYDPTKRPSFRAILRDL  258 (259)
T ss_pred             CCCcccCCch-hH--------HHHHh------------cCCCCC---CCCchHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence            5555432210 00        00000            000000   01116788999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=1.7e-36  Score=249.68  Aligned_cols=197  Identities=17%  Similarity=0.252  Sum_probs=152.8

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++.+.++...++||||+++|+|.+++..      ..++...+..++.|++.||.|||   +++|+||||||
T Consensus       100 ~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~~~~------~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp  170 (371)
T cd05622         100 ANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSN------YDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKP  170 (371)
T ss_pred             CCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCH
Confidence            6899999999999999999999999999999999865      34788889999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC----cccccchhhhhhHHHHHhcCCCCcccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV----FNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      +||+++.++.+||+|||++...............||+.|+|||++....    ++.++||||||+++|+|++|..||...
T Consensus       171 ~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  250 (371)
T cd05622         171 DNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (371)
T ss_pred             HHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCC
Confidence            9999999999999999998765433222233556899999999987543    788999999999999999999998632


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhc--CCCcHHHHHHHHHHHHHHhhhcCCCCCC--CCCHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVE--DVSSIEKEQQLHASAQVTFECIKDSPAD--RPSMVDVAKK  228 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~ell~~  228 (239)
                      ..                     ......+...  ....+.....+..++++|..|+..++.+  |++++++++.
T Consensus       251 ~~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h  304 (371)
T cd05622         251 SL---------------------VGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH  304 (371)
T ss_pred             CH---------------------HHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcC
Confidence            21                     0111111110  0011111245667889999999844433  7789888873

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=3.7e-36  Score=237.19  Aligned_cols=200  Identities=19%  Similarity=0.245  Sum_probs=154.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..++||||+++++|.+++...     ..++...+..++.|++.|+.|||   +.+++|+|||
T Consensus        62 ~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk  133 (267)
T cd06645          62 DCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVT-----GPLSESQIAYVSRETLQGLYYLH---SKGKMHRDIK  133 (267)
T ss_pred             hCCCCCeeeEEEEEEeCCEEEEEEeccCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            368999999999999999999999999999999998765     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc---cCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR---TGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++....... .......|+..|+|||++.   ...++.++|+||||+++|+|++|..||...
T Consensus       134 p~nili~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~  212 (267)
T cd06645         134 GANILLTDNGHVKLADFGVSAQITATI-AKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDL  212 (267)
T ss_pred             HHHEEECCCCCEEECcceeeeEccCcc-cccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccc
Confidence            999999999999999999986543221 1223456889999999874   345788999999999999999999887533


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .......       ..  ....        .... ........+..+.+++.+||..+|++|||++++++
T Consensus       213 ~~~~~~~-------~~--~~~~--------~~~~-~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         213 HPMRALF-------LM--TKSN--------FQPP-KLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             cchhhHH-------hh--hccC--------CCCC-cccccCCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence            2111000       00  0000        0000 00000123456889999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=4.8e-36  Score=238.35  Aligned_cols=217  Identities=24%  Similarity=0.368  Sum_probs=161.7

Q ss_pred             CCCCcccceeeEEEEe--CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLE--TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~--~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++..  +...+++|||+++++|.+++....    ..+++..+..++.|++.||+|||   +.+++|+|
T Consensus        62 ~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~d  134 (284)
T cd05038          62 TLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHR----DQINLKRLLLFSSQICKGMDYLG---SQRYIHRD  134 (284)
T ss_pred             hCCCCChheEEeeeecCCCCceEEEEecCCCCCHHHHHHhCc----cccCHHHHHHHHHHHHHHHHHHH---hCCeecCC
Confidence            4789999999999887  557899999999999999997653    35889999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||+||+++.++.++|+|||.+.........  ......++..|+|||.+.+..++.++|+||||+++++|++|..|+..
T Consensus       135 l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~  214 (284)
T cd05038         135 LAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQS  214 (284)
T ss_pred             CCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCccc
Confidence            9999999999999999999998766432211  11123345679999999888899999999999999999999988653


Q ss_pred             ccccc-cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          157 VKDVH-DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       157 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      ..... ....+       ........... ..+........+...+..+.+++.+||+.+|.+|||+.|+++.|+++
T Consensus       215 ~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         215 PPAEFLRMIGI-------AQGQMIVTRLL-ELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             ccchhcccccc-------ccccccHHHHH-HHHHcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence            22111 00000       00000011111 11111111111223456789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=3.4e-36  Score=237.65  Aligned_cols=203  Identities=20%  Similarity=0.326  Sum_probs=159.3

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++..++..+++|||+++++|.+++...... ...++...+..++.|++.||.|||.  ..+++|+||+|
T Consensus        66 ~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~--~~~i~H~dl~~  142 (269)
T cd08528          66 LRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEK-KQRFTEERIWNIFVQMVLALRYLHK--EKRIVHRDLTP  142 (269)
T ss_pred             CCCCCeeeEEeeEccCCeEEEEEecCCCCcHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHhcc--CCceeecCCCH
Confidence            68999999999999999999999999999999987542111 1468889999999999999999993  36899999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.++|+|||.+.......  ......++..|+|||...+..++.++|+||||+++|++++|..||.....  
T Consensus       143 ~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~--  218 (269)
T cd08528         143 NNIMLGEDDKVTITDFGLAKQKQPES--KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNM--  218 (269)
T ss_pred             HHEEECCCCcEEEecccceeeccccc--ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCH--
Confidence            99999999999999999987653322  23345678899999999988899999999999999999999988753211  


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                                         .............+......+..+.+++.+||+.||.+|||+.|+.+++.
T Consensus       219 -------------------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         219 -------------------LSLATKIVEAVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             -------------------HHHHHHHhhccCCcCCcccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence                               01111111111111111134567889999999999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=6e-36  Score=243.39  Aligned_cols=207  Identities=22%  Similarity=0.355  Sum_probs=160.0

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC-----------CCCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-----------PHFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~-----------~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +||||+++++++...+..++++||+++++|.+++.....           .....++...+..++.|++.||.|||   +
T Consensus        76 ~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~  152 (334)
T cd05100          76 KHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA---S  152 (334)
T ss_pred             CCCCeeeeeEEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---H
Confidence            799999999999998899999999999999999976421           01135778889999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-  149 (239)
                      ++++|+||||+||+++.++.++|+|||+++........ ......++..|+|||++.+..++.++||||||+++|+|++ 
T Consensus       153 ~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~  232 (334)
T cd05100         153 QKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTL  232 (334)
T ss_pred             CCeeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhc
Confidence            99999999999999999999999999998755332211 1122234567999999998889999999999999999998 


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||....                     ..+.......... ...+...+..+.+++.+||+.+|.+|||+.|+++.|
T Consensus       233 g~~p~~~~~---------------------~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l  290 (334)
T cd05100         233 GGSPYPGIP---------------------VEELFKLLKEGHR-MDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDL  290 (334)
T ss_pred             CCCCCCCCC---------------------HHHHHHHHHcCCC-CCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHH
Confidence            767764321                     0111111111110 001113456788999999999999999999999999


Q ss_pred             HHHHH
Q 044155          230 RQIYR  234 (239)
Q Consensus       230 ~~l~~  234 (239)
                      +++..
T Consensus       291 ~~~~~  295 (334)
T cd05100         291 DRVLT  295 (334)
T ss_pred             HHHhh
Confidence            98874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=7.2e-37  Score=260.20  Aligned_cols=203  Identities=21%  Similarity=0.256  Sum_probs=160.5

Q ss_pred             CCcccceeeEE-EEe------CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            3 SHNHILKLIGC-CLE------TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         3 ~H~niv~l~~~-~~~------~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      .|+|||.+++. ...      ...+.+.||||.+|+|-|++.....   ..|++.++++|++|+++|+++||.. ..+|+
T Consensus        93 gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq---~~lte~eVLkIf~dv~~AVa~mH~~-~pPiI  168 (738)
T KOG1989|consen   93 GHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQ---TRLTEDEVLKIFYDVCEAVAAMHYL-KPPII  168 (738)
T ss_pred             CCCceeeEeccccccccCCCceeEEEeehhhccCCcHHHHHHHHHh---ccCChHHHHHHHHHHHHHHHHHhcC-CCccc
Confidence            49999999993 221      1246789999999999999986544   5699999999999999999999943 44699


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCc--------ceeecccccccccCccccc---cCCcccccchhhhhhHH
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGET--------HITDTVMGTLGYCAPEYMR---TGVFNEKSNVFSFSVFL  144 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~--------~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~~l  144 (239)
                      |||||.+|||++.++..||||||.+..-.....        ...-...-|+.|+|||++.   +.+.++|+|||+|||+|
T Consensus       169 HRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclL  248 (738)
T KOG1989|consen  169 HRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLL  248 (738)
T ss_pred             hhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHH
Confidence            999999999999999999999998753221110        0111233578899999874   56789999999999999


Q ss_pred             HHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 044155          145 FELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD  224 (239)
Q Consensus       145 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~e  224 (239)
                      |-++....||+.....                         +++...+.-+.....+..+++||..||+.||.+||++-+
T Consensus       249 YkLCy~t~PFe~sg~l-------------------------aIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Q  303 (738)
T KOG1989|consen  249 YKLCYFTTPFEESGKL-------------------------AILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQ  303 (738)
T ss_pred             HHHHHhCCCcCcCcce-------------------------eEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHH
Confidence            9999999998753211                         233334443333578889999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 044155          225 VAKKLRQIYR  234 (239)
Q Consensus       225 ll~~L~~l~~  234 (239)
                      |++.+.++..
T Consensus       304 v~~~~~~l~~  313 (738)
T KOG1989|consen  304 VLEEIFELAN  313 (738)
T ss_pred             HHHHHHHHhc
Confidence            9999988754

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.5e-36  Score=247.60  Aligned_cols=144  Identities=22%  Similarity=0.353  Sum_probs=125.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++|+|++. ++|.+++....    ..+++..+..++.|++.||.|||   +++|+|||||
T Consensus       113 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlk  184 (357)
T PHA03209        113 NVNHPSVIRMKDTLVSGAITCMVLPHYS-SDLYTYLTKRS----RPLPIDQALIIEKQILEGLRYLH---AQRIIHRDVK  184 (357)
T ss_pred             hCCCCCCcChhheEEeCCeeEEEEEccC-CcHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            4799999999999999999999999996 79988887543    56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+||+++.++.++|+|||+++......  ......|++.|+|||++.+..++.++||||||+++|+|+++..++
T Consensus       185 p~Nill~~~~~~kl~DfG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        185 TENIFINDVDQVCIGDLGAAQFPVVAP--AFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             HHHEEECCCCCEEEecCccccccccCc--ccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            999999999999999999986432211  122445889999999999889999999999999999999866544

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=5.8e-36  Score=239.57  Aligned_cols=213  Identities=18%  Similarity=0.290  Sum_probs=158.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCC------CCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPH------FEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~------~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++|+||+++++++......+++|||+++++|.+++.......      ...++...+..++.|++.||+|||   +.++
T Consensus        75 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i  151 (296)
T cd05095          75 RLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLS---SLNF  151 (296)
T ss_pred             hCCCCCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCe
Confidence            4789999999999999999999999999999999987643211      124677889999999999999999   8999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc--CC
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT--GW  151 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~--g~  151 (239)
                      +|+||||+||+++.++.++|+|||++........ .......+++.|+|||...+..++.++|+||||+++|||++  |.
T Consensus       152 ~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~  231 (296)
T cd05095         152 VHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKE  231 (296)
T ss_pred             ecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999875433221 11222334678999999888889999999999999999998  55


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||.........        ...      ............. ..+...+..+.+++.+||+.||.+|||+.++.+.|++
T Consensus       232 ~p~~~~~~~~~~--------~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         232 QPYSQLSDEQVI--------ENT------GEFFRDQGRQVYL-PKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             CCccccChHHHH--------HHH------HHHHhhccccccC-CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            676533211100        000      0000000000000 0011344678899999999999999999999998863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=2.1e-36  Score=245.02  Aligned_cols=188  Identities=21%  Similarity=0.320  Sum_probs=151.9

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +|++|+++++++.+.+..++||||+++|+|.+.+...     ..+++..+..++.|++.||.|||   +.+++||||||+
T Consensus        59 ~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~  130 (323)
T cd05616          59 KPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQV-----GRFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLD  130 (323)
T ss_pred             CCCeEeeEEEEEecCCEEEEEEcCCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEEecCCCHH
Confidence            6899999999999999999999999999999988765     56888999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      |||++.++.+||+|||++....... .......|++.|+|||++.+..++.++|+|||||++|+|++|..||.....   
T Consensus       131 Nill~~~~~~kL~DfG~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~---  206 (323)
T cd05616         131 NVMLDSEGHIKIADFGMCKENMWDG-VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE---  206 (323)
T ss_pred             HeEECCCCcEEEccCCCceecCCCC-CccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCH---
Confidence            9999999999999999986432111 122345689999999999988999999999999999999999999854221   


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                                        ......+......  .+...+..+.+++.+||+.||.+|++.
T Consensus       207 ------------------~~~~~~i~~~~~~--~p~~~s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         207 ------------------DELFQSIMEHNVA--YPKSMSKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             ------------------HHHHHHHHhCCCC--CCCcCCHHHHHHHHHHcccCHHhcCCC
Confidence                              1111111111111  112345678899999999999999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=2e-36  Score=250.35  Aligned_cols=200  Identities=16%  Similarity=0.203  Sum_probs=152.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++|+|.+++.+.     ..+++..++.++.|++.||.|||   ..+|+|||||
T Consensus        57 ~l~h~~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-----~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDlK  128 (381)
T cd05626          57 EADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM-----EVFPEVLARFYIAELTLAIESVH---KMGFIHRDIK  128 (381)
T ss_pred             hcCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCc
Confidence            468999999999999999999999999999999999765     56888999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC----------------------------------------------cceeecc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE----------------------------------------------THITDTV  114 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~----------------------------------------------~~~~~~~  114 (239)
                      |+||+++.++.++|+|||++.......                                              .......
T Consensus       129 p~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (381)
T cd05626         129 PDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSL  208 (381)
T ss_pred             HHHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhccccccccccccccc
Confidence            999999999999999999875321000                                              0001234


Q ss_pred             cccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCc
Q 044155          115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSS  194 (239)
Q Consensus       115 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (239)
                      .||+.|+|||++.+..++.++|||||||++|||++|..||.........                 ......  ......
T Consensus       209 ~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~-----------------~~i~~~--~~~~~~  269 (381)
T cd05626         209 VGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQ-----------------LKVINW--ENTLHI  269 (381)
T ss_pred             cCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHHHH-----------------HHHHcc--ccccCC
Confidence            6899999999999888999999999999999999999998542210000                 000000  000000


Q ss_pred             HHHHHHHHHHHHHHhhh--cCCCCCCCCCHHHHHH
Q 044155          195 IEKEQQLHASAQVTFEC--IKDSPADRPSMVDVAK  227 (239)
Q Consensus       195 ~~~~~~~~~~~~li~~c--l~~dp~~Rps~~ell~  227 (239)
                      +.....++++.++|.+|  +..+|..||++++++.
T Consensus       270 ~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~  304 (381)
T cd05626         270 PPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKA  304 (381)
T ss_pred             CCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhc
Confidence            01113456778899884  4556666999999986

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-36  Score=251.27  Aligned_cols=197  Identities=17%  Similarity=0.239  Sum_probs=151.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++|+|.+++...     ..++...++.++.|++.||.|||   +.+++|||||
T Consensus        57 ~l~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~ql~~aL~~LH---~~givHrDlk  128 (377)
T cd05629          57 ESDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKY-----DTFSEDVTRFYMAECVLAIEAVH---KLGFIHRDIK  128 (377)
T ss_pred             hCCCCCcceEEEEEEcCCeeEEEEeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence            468999999999999999999999999999999999765     56888999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc------------c----------------------------------eeecc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET------------H----------------------------------ITDTV  114 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~------------~----------------------------------~~~~~  114 (239)
                      |+||+++.++.++|+|||++........            .                                  .....
T Consensus       129 p~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (377)
T cd05629         129 PDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYST  208 (377)
T ss_pred             HHHEEECCCCCEEEeecccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhccccccccc
Confidence            9999999999999999999853211000            0                                  00124


Q ss_pred             cccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhh--cCC
Q 044155          115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVV--EDV  192 (239)
Q Consensus       115 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  192 (239)
                      .||+.|+|||++.+..++.++|||||||++|||++|..||.......                     ....+..  ...
T Consensus       209 ~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~---------------------~~~~i~~~~~~~  267 (377)
T cd05629         209 VGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHE---------------------TYRKIINWRETL  267 (377)
T ss_pred             CCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCCHHH---------------------HHHHHHccCCcc
Confidence            58999999999998889999999999999999999999985322100                     0000000  000


Q ss_pred             CcHHHHHHHHHHHHHHhhhcCCCCCCC---CCHHHHHH
Q 044155          193 SSIEKEQQLHASAQVTFECIKDSPADR---PSMVDVAK  227 (239)
Q Consensus       193 ~~~~~~~~~~~~~~li~~cl~~dp~~R---ps~~ell~  227 (239)
                      ..+.....+..+.+++.+|+. +|.+|   +|+.|+++
T Consensus       268 ~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~  304 (377)
T cd05629         268 YFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKS  304 (377)
T ss_pred             CCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhc
Confidence            000001234678899999998 66665   59999876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=3.2e-36  Score=242.93  Aligned_cols=221  Identities=19%  Similarity=0.244  Sum_probs=159.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......+++|||+++++|.+++.....   ..++......++.|++.||+|||   +.+++|+|||
T Consensus        55 ~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~LH---~~~ivH~dlk  128 (314)
T cd08216          55 QLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFP---EGLPELAIAFILKDVLNALDYIH---SKGFIHRSVK  128 (314)
T ss_pred             hcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            47899999999999999999999999999999999986533   45788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc------ceeecccccccccCcccccc--CCcccccchhhhhhHHHHHhcCCC
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRT--GVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      |+||+++.++.++++|||.+........      .......++..|+|||++..  ..++.++|+||||+++|+|++|..
T Consensus       129 ~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~  208 (314)
T cd08216         129 ASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHV  208 (314)
T ss_pred             cceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCC
Confidence            9999999999999999998765432111      11223346778999999875  357889999999999999999999


Q ss_pred             Ccccccccccccccchhhhhhhhhccchhhh-----------hhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEI-----------VDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS  221 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps  221 (239)
                      ||.............................           .................+..+.+++.+||..||++|||
T Consensus       209 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt  288 (314)
T cd08216         209 PFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPS  288 (314)
T ss_pred             CCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcC
Confidence            9875432211100000000000000000000           00000011111222355678899999999999999999


Q ss_pred             HHHHHH
Q 044155          222 MVDVAK  227 (239)
Q Consensus       222 ~~ell~  227 (239)
                      ++++++
T Consensus       289 ~~~ll~  294 (314)
T cd08216         289 ASQLLN  294 (314)
T ss_pred             HHHHhc
Confidence            999997

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=4.7e-36  Score=240.15  Aligned_cols=197  Identities=17%  Similarity=0.260  Sum_probs=155.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++|+||+++++|.+++..      ..+++..+..++.|++.|+.|||   +.+++|+|||
T Consensus        72 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~------~~l~~~~~~~i~~~l~~al~~LH---~~~i~H~dL~  142 (296)
T cd06655          72 ELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVTE------TCMDEAQIAAVCRECLQALEFLH---ANQVIHRDIK  142 (296)
T ss_pred             hcCCCceeeeeeeEecCceEEEEEEecCCCcHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            47899999999999999999999999999999998864      45789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++....... .......++..|+|||.+.+..++.++|+||||+++|++++|..||......
T Consensus       143 p~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~  221 (296)
T cd06655         143 SDNVLLGMDGSVKLTDFGFCAQITPEQ-SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL  221 (296)
T ss_pred             HHHEEECCCCCEEEccCccchhccccc-ccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            999999999999999999876543221 1122345788999999998888999999999999999999999988542211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...        .         . ...  ........+...+..+.++|.+||..||.+|||+.+++.
T Consensus       222 ~~~--------~---------~-~~~--~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         222 RAL--------Y---------L-IAT--NGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             HHH--------H---------H-HHh--cCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence            000        0         0 000  000000011234567889999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=6.4e-36  Score=234.22  Aligned_cols=199  Identities=23%  Similarity=0.328  Sum_probs=158.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++++|++.+++|.+++....    ..+++..+..++.|++.|+.|||   +.+++|+||+
T Consensus        54 ~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~~----~~l~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~  126 (256)
T cd06612          54 QCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITN----KTLTEEEIAAILYQTLKGLEYLH---SNKKIHRDIK  126 (256)
T ss_pred             hCCCCcEeeeeeeeecCCcEEEEEecCCCCcHHHHHHhCc----cCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            3689999999999999999999999999999999987543    56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+....... .......++..|+|||++.+..++.++||||||+++|+|++|..||......
T Consensus       127 ~~ni~~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~  205 (256)
T cd06612         127 AGNILLNEEGQAKLADFGVSGQLTDTM-AKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPM  205 (256)
T ss_pred             cceEEECCCCcEEEcccccchhcccCc-cccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchh
Confidence            999999999999999999987653322 1223445788999999998888999999999999999999999998643211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                  ........  ........+..+.+++.+||+.||++|||+.|+++
T Consensus       206 ~~~~------------------~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         206 RAIF------------------MIPNKPPP--TLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             hhhh------------------hhccCCCC--CCCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence            1000                  00000000  00111234567899999999999999999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=2e-36  Score=249.67  Aligned_cols=213  Identities=22%  Similarity=0.262  Sum_probs=155.1

Q ss_pred             CCCCcccceeeEEEEeCC-----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLETP-----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~-----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++....     ..++|+||+. ++|.+.+...     ..++...+..++.|++.||.|||   +.+++
T Consensus        55 ~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-----~~l~~~~~~~~~~qi~~aL~~LH---~~~iv  125 (372)
T cd07853          55 FFKHDNVLSALDILQPPHIDPFEEIYVVTELMQ-SDLHKIIVSP-----QPLSSDHVKVFLYQILRGLKYLH---SAGIL  125 (372)
T ss_pred             hCCCCCcCCHhheecCCCccccceEEEEeeccc-cCHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH---hCCee
Confidence            378999999999998766     6789999997 7888888654     56889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+||||+||+++.++.+||+|||++...............+++.|+|||.+.+. .++.++|||||||++|+|++|+.||
T Consensus       126 H~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf  205 (372)
T cd07853         126 HRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILF  205 (372)
T ss_pred             CCCCChHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCC
Confidence            999999999999999999999999876433222222334578899999998874 4789999999999999999999999


Q ss_pred             ccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCCCcH-------HHHHHHHHHHHHHhhhcCCCCCCCC
Q 044155          155 DLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVSSI-------EKEQQLHASAQVTFECIKDSPADRP  220 (239)
Q Consensus       155 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~li~~cl~~dp~~Rp  220 (239)
                      ...........       +..+......     ...............       .....++.+.++|.+||+.||.+||
T Consensus       206 ~~~~~~~~~~~i~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~  280 (372)
T cd07853         206 QAQSPIQQLDLITDLLGTPSLEAMRSAC-----EGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRI  280 (372)
T ss_pred             CCCCHHHHHHHHHHHcCCCCHHHHHHhh-----HHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCc
Confidence            65432211100       0000000000     000000001110000       0012356788999999999999999


Q ss_pred             CHHHHHH
Q 044155          221 SMVDVAK  227 (239)
Q Consensus       221 s~~ell~  227 (239)
                      |+.|+++
T Consensus       281 t~~e~l~  287 (372)
T cd07853         281 SAADALA  287 (372)
T ss_pred             CHHHHhc
Confidence            9999986

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=1.2e-36  Score=255.52  Aligned_cols=223  Identities=18%  Similarity=0.285  Sum_probs=153.0

Q ss_pred             CCCCcccceeeEEEEeC--------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC
Q 044155            1 QMSHNHILKLIGCCLET--------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR   72 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~   72 (239)
                      +++||||+++++++...        ...++||||++ ++|.+++..... ....++...+..++.|++.||+|||   +.
T Consensus       115 ~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~-~~l~~~~~~~~~-~~~~l~~~~~~~~~~qi~~gL~yLH---~~  189 (440)
T PTZ00036        115 NLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIP-QTVHKYMKHYAR-NNHALPLFLVKLYSYQLCRALAYIH---SK  189 (440)
T ss_pred             hcCCCCCcceeeeEeecccccCCCceEEEEEEecCC-ccHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            47899999999987542        13568999997 688777754211 1156889999999999999999999   89


Q ss_pred             CeeeccccCcceeecCCC-ceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcC
Q 044155           73 PIVFRNFKTSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTG  150 (239)
Q Consensus        73 ~i~H~dlk~~nil~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g  150 (239)
                      +|+||||||+||+++.++ .+||+|||+++.......  .....+++.|+|||++.+. .++.++|||||||++|+|++|
T Consensus       190 ~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG  267 (440)
T PTZ00036        190 FICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQR--SVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILG  267 (440)
T ss_pred             CEecCCcCHHHEEEcCCCCceeeeccccchhccCCCC--cccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            999999999999998665 699999999976543221  2234678999999998764 689999999999999999999


Q ss_pred             CCCcccccccccccc-------cchhhhhhhhhccchhhh-hhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          151 WDVSDLVKDVHDLVC-------PFSEYLKNCFEDNRFTEI-VDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                      ..||...........       +..+.....  ...+.+. .............+...+.++.+|+.+||..||.+|||+
T Consensus       268 ~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta  345 (440)
T PTZ00036        268 YPIFSGQSSVDQLVRIIQVLGTPTEDQLKEM--NPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNP  345 (440)
T ss_pred             CCCCCCCChHHHHHHHHHHhCCCCHHHHHHh--chhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCH
Confidence            999865432211100       000000000  0000000 000000000000112345678999999999999999999


Q ss_pred             HHHHH--HHHHH
Q 044155          223 VDVAK--KLRQI  232 (239)
Q Consensus       223 ~ell~--~L~~l  232 (239)
                      .|+++  ++..+
T Consensus       346 ~e~l~hp~f~~~  357 (440)
T PTZ00036        346 IEALADPFFDDL  357 (440)
T ss_pred             HHHhCChhHHhh
Confidence            99985  44443

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=2.4e-36  Score=240.32  Aligned_cols=220  Identities=16%  Similarity=0.179  Sum_probs=155.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+++..++||||++ ++|.+++......  ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        55 ~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~  128 (285)
T cd07861          55 ELQHPNIVCLQDVLMQESRLYLIFEFLS-MDLKKYLDSLPKG--QYMDAELVKSYLYQILQGILFCH---SRRVLHRDLK  128 (285)
T ss_pred             hcCCCCEeeeEEEEeeCCeEEEEEecCC-CCHHHHHhcCCCC--CcCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCC
Confidence            4689999999999999999999999997 7898888654321  46889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++....... .......+++.|+|||.+.+. .++.++|+||||+++|+|++|+.||.....
T Consensus       129 p~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~  207 (285)
T cd07861         129 PQNLLIDNKGVIKLADFGLARAFGIPV-RVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSE  207 (285)
T ss_pred             HHHEEEcCCCcEEECcccceeecCCCc-ccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCH
Confidence            999999999999999999986543221 112233567889999988654 478899999999999999999999864332


Q ss_pred             cccccccchhh---hhhhhhccchhhhhhhhhhcCCC---cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEY---LKNCFEDNRFTEIVDHIVVEDVS---SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .......+...   ....+..................   .......++++.++|.+||..||.+|||+.++++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         208 IDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             HHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence            11110000000   00000000000000000000000   0001134567889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=4.6e-36  Score=239.22  Aligned_cols=206  Identities=24%  Similarity=0.369  Sum_probs=157.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC-----------------CCCCcCCHHHHHHHHHHHHHHH
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-----------------PHFEPLLLKHRLKIAMDIVHAL   63 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~i~~~l   63 (239)
                      +++||||+++++++.++...++++||+++++|.+++.....                 .....++...+..++.|++.||
T Consensus        64 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL  143 (288)
T cd05050          64 EFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGM  143 (288)
T ss_pred             hcCCCchheEEEEEcCCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999975321                 0113467888999999999999


Q ss_pred             hHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhh
Q 044155           64 AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSV  142 (239)
Q Consensus        64 ~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  142 (239)
                      .|||   +.+++|+||||+||+++.++.++|+|||.+........ ........+..|+|||.+.+..++.++|+||||+
T Consensus       144 ~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~  220 (288)
T cd05050         144 AYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGV  220 (288)
T ss_pred             HHHH---hCCeecccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHH
Confidence            9999   89999999999999999999999999998765422211 1112223467799999998888999999999999


Q ss_pred             HHHHHhc-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 044155          143 FLFELLT-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS  221 (239)
Q Consensus       143 ~l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps  221 (239)
                      ++|+|++ |..||.....                     .+........... ..+...+..+.+++.+||..||.+|||
T Consensus       221 il~el~~~~~~p~~~~~~---------------------~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~Rpt  278 (288)
T cd05050         221 VLWEIFSYGMQPYYGMAH---------------------EEVIYYVRDGNVL-SCPDNCPLELYNLMRLCWSKLPSDRPS  278 (288)
T ss_pred             HHHHHHhCCCCCCCCCCH---------------------HHHHHHHhcCCCC-CCCCCCCHHHHHHHHHHcccCcccCCC
Confidence            9999997 7667643211                     0111111111111 011234567899999999999999999


Q ss_pred             HHHHHHHHHH
Q 044155          222 MVDVAKKLRQ  231 (239)
Q Consensus       222 ~~ell~~L~~  231 (239)
                      +.|+++.|++
T Consensus       279 ~~el~~~l~~  288 (288)
T cd05050         279 FASINRILQR  288 (288)
T ss_pred             HHHHHHHhhC
Confidence            9999998863

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=1.4e-36  Score=245.95  Aligned_cols=189  Identities=18%  Similarity=0.248  Sum_probs=153.0

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      ..|+||+||-.|.+...+|+||||++||++..+|...     ..+++.+++.++.+++.|+..+|   ..|++||||||+
T Consensus       199 ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTLL~~~-----~~L~e~~arfYiaE~vlAI~~iH---~~gyIHRDIKPd  270 (550)
T KOG0605|consen  199 DSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTLLMRK-----DTLTEDWARFYIAETVLAIESIH---QLGYIHRDIKPD  270 (550)
T ss_pred             CCCcEEEEEEEecCCCeeEEEEEecCCccHHHHHHhc-----CcCchHHHHHHHHHHHHHHHHHH---HcCcccccCChh
Confidence            5789999999999999999999999999999999876     67999999999999999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCC----------------------CCcc------------------------eeecccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPE----------------------GETH------------------------ITDTVMG  116 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~----------------------~~~~------------------------~~~~~~~  116 (239)
                      |+||+..|.+||+|||++..+..                      ....                        .....+|
T Consensus       271 NlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVG  350 (550)
T KOG0605|consen  271 NLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVG  350 (550)
T ss_pred             heeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccC
Confidence            99999999999999999753211                      0000                        0113579


Q ss_pred             cccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcC--CCc
Q 044155          117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED--VSS  194 (239)
Q Consensus       117 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  194 (239)
                      ||.|+|||++.+..++..+|.||||||+|||+.|.+||..-                     ...+....++...  ...
T Consensus       351 TPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~---------------------tp~~T~rkI~nwr~~l~f  409 (550)
T KOG0605|consen  351 TPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSE---------------------TPQETYRKIVNWRETLKF  409 (550)
T ss_pred             CccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCC---------------------CHHHHHHHHHHHhhhccC
Confidence            99999999999999999999999999999999999998532                     2222222222211  111


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 044155          195 IEKEQQLHASAQVTFECIKDSPADRPS  221 (239)
Q Consensus       195 ~~~~~~~~~~~~li~~cl~~dp~~Rps  221 (239)
                      +.....+.+.++||.+|+. ||.+|.-
T Consensus       410 P~~~~~s~eA~DLI~rll~-d~~~RLG  435 (550)
T KOG0605|consen  410 PEEVDLSDEAKDLITRLLC-DPENRLG  435 (550)
T ss_pred             CCcCcccHHHHHHHHHHhc-CHHHhcC
Confidence            2222445788999999999 9999985

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.4e-35  Score=270.97  Aligned_cols=218  Identities=28%  Similarity=0.430  Sum_probs=164.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||+++|+|.+....++||||+++|+|.++++        .+++..+.+++.|++.|++|||..+..+++|||+|
T Consensus       739 ~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~--------~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlk  810 (968)
T PLN00113        739 KLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR--------NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLS  810 (968)
T ss_pred             hCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHh--------cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCC
Confidence            4789999999999999999999999999999999994        37788999999999999999996556799999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.+++. ++.......     .....+++.|+|||++.+..++.++||||||+++|||++|+.||......
T Consensus       811 p~Nil~~~~~~~~~~-~~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~  884 (968)
T PLN00113        811 PEKIIIDGKDEPHLR-LSLPGLLCT-----DTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGV  884 (968)
T ss_pred             HHhEEECCCCceEEE-ecccccccc-----CCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCC
Confidence            999999998887765 554322211     11235788999999999889999999999999999999999998533221


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhhc
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLS  237 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~~  237 (239)
                      .   ....++.+............+..+.....  .......++.+++.+||+.||++|||++|+++.|+++....+
T Consensus       885 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~~~  956 (968)
T PLN00113        885 H---GSIVEWARYCYSDCHLDMWIDPSIRGDVS--VNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRSSS  956 (968)
T ss_pred             C---CcHHHHHHHhcCccchhheeCccccCCCC--ccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhcccc
Confidence            1   11122222222222222222222222111  112445678899999999999999999999999999877543

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=2.5e-36  Score=256.56  Aligned_cols=200  Identities=21%  Similarity=0.264  Sum_probs=156.7

Q ss_pred             CCCcccceeeEEEEeCC--------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC
Q 044155            2 MSHNHILKLIGCCLETP--------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP   73 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~--------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~   73 (239)
                      ++|+||+++++.+....        ..++||||+++|+|.++++..... ...++...+..++.|++.||.|||   +.+
T Consensus        88 ~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~-~~~l~e~~~~~i~~qll~aL~~lH---~~~  163 (496)
T PTZ00283         88 CDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKT-NRTFREHEAGLLFIQVLLAVHHVH---SKH  163 (496)
T ss_pred             CCCCcEEEeecceecccccCcccceEEEEEEeCCCCCcHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHH---hCC
Confidence            68999999988775432        257999999999999998754321 156889999999999999999999   899


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCC
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      ++||||||+||+++.++.+||+|||+++...... ........|++.|+|||++.+..++.++||||||+++|+|++|..
T Consensus       164 IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~  243 (496)
T PTZ00283        164 MIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKR  243 (496)
T ss_pred             EecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999987653221 112335568999999999998889999999999999999999999


Q ss_pred             CcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ||....                     ..+........... ..+...++.+.+++.+||+.||.+|||+.+++.
T Consensus       244 Pf~~~~---------------------~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~  296 (496)
T PTZ00283        244 PFDGEN---------------------MEEVMHKTLAGRYD-PLPPSISPEMQEIVTALLSSDPKRRPSSSKLLN  296 (496)
T ss_pred             CCCCCC---------------------HHHHHHHHhcCCCC-CCCCCCCHHHHHHHHHHcccChhhCcCHHHHHh
Confidence            985321                     11112222221111 112245677899999999999999999999986

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=8.3e-38  Score=273.93  Aligned_cols=197  Identities=18%  Similarity=0.255  Sum_probs=161.3

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      |+|||+|++||+=.+....+|.||||++|+|.+.+..+     ...++.....+-.|++.|++|||   ++||||||+||
T Consensus      1291 lnHpNlV~YyGVEvHRekv~IFMEyC~~GsLa~ll~~g-----ri~dE~vt~vyt~qll~gla~LH---~~gIVHRDIK~ 1362 (1509)
T KOG4645|consen 1291 LNHPNLVRYYGVEVHREKVYIFMEYCEGGSLASLLEHG-----RIEDEMVTRVYTKQLLEGLAYLH---EHGIVHRDIKP 1362 (1509)
T ss_pred             ccCccccccCceeecHHHHHHHHHHhccCcHHHHHHhc-----chhhhhHHHHHHHHHHHHHHHHH---hcCceecCCCc
Confidence            79999999999999999999999999999999999876     45677777888999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcc---eeecccccccccCccccccCC---cccccchhhhhhHHHHHhcCCCCcc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETH---ITDTVMGTLGYCAPEYMRTGV---FNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~---~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      .||+++.+|.+|++|||.+.....+...   -.....||+.|||||++.+..   ...++|||||||++.||+||+.||.
T Consensus      1363 aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~ 1442 (1509)
T KOG4645|consen 1363 ANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWA 1442 (1509)
T ss_pred             cceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchh
Confidence            9999999999999999999877554311   134668999999999997644   5678999999999999999999986


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .+......                 +.   ++-.++.. ..+...+.+-.+|+..||..||+.|.++.|+++
T Consensus      1443 ~~dne~aI-----------------My---~V~~gh~P-q~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1443 ELDNEWAI-----------------MY---HVAAGHKP-QIPERLSSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred             hccchhHH-----------------Hh---HHhccCCC-CCchhhhHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence            55421111                 11   12222222 223347788899999999999999999988876

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=4.6e-36  Score=237.95  Aligned_cols=195  Identities=21%  Similarity=0.322  Sum_probs=156.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..++..++|+||+++++|.+++..      ..+++..+..++.|++.|+.|||   +.+++|+||+
T Consensus        58 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~------~~~~~~~~~~~~~~i~~~l~~lH---~~~ivH~dl~  128 (277)
T cd06642          58 QCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKP------GPLEETYIATILREILKGLDYLH---SERKIHRDIK  128 (277)
T ss_pred             cCCCCccHhhhcccccCCceEEEEEccCCCcHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHh---cCCeeccCCC
Confidence            47899999999999999999999999999999998864      45788899999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++++|||++....... .......++..|+|||++.+..++.++|+||||+++|++++|..|+......
T Consensus       129 p~ni~i~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~  207 (277)
T cd06642         129 AANVLLSEQGDVKLADFGVAGQLTDTQ-IKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPM  207 (277)
T ss_pred             hheEEEeCCCCEEEccccccccccCcc-hhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchh
Confidence            999999999999999999986553321 1122345788899999999888999999999999999999999987533211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...        .          .    .............+..+.+++.+||..+|.+|||+.+++.
T Consensus       208 ~~~--------~----------~----~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06642         208 RVL--------F----------L----IPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLK  252 (277)
T ss_pred             hHH--------h----------h----hhcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence            000        0          0    0000000111234567889999999999999999999998

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.6e-36  Score=256.99  Aligned_cols=221  Identities=14%  Similarity=0.202  Sum_probs=154.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++|++++. ++|.+++................+.++.|++.||.|||   +++|+|||||
T Consensus       219 ~l~HpnIv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH---~~gIiHrDLK  294 (501)
T PHA03210        219 RLNHENILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIH---DKKLIHRDIK  294 (501)
T ss_pred             hCCCCCcCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            4799999999999999999999999996 78888776543211123345677889999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCC-cccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDV-SDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p-~~~~~~  159 (239)
                      |+|||++.++.+||+|||++...............|+..|+|||++.+..++.++|||||||++|||++|..+ +.....
T Consensus       295 P~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~  374 (501)
T PHA03210        295 LENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGG  374 (501)
T ss_pred             HHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCC
Confidence            9999999999999999999976644332223345689999999999988999999999999999999998754 332211


Q ss_pred             cccccccchhhhh------hhhhc--cchhhhhhhhhhcCC-C---cH-HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          160 VHDLVCPFSEYLK------NCFED--NRFTEIVDHIVVEDV-S---SI-EKEQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       160 ~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                      ...  ....+...      ..+..  ....+.+........ .   .. .....+..+.+++.+||..||.+|||+.|++
T Consensus       375 ~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL  452 (501)
T PHA03210        375 KPG--KQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELL  452 (501)
T ss_pred             CHH--HHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHh
Confidence            000  00000000      00000  000000100000000 0   00 0112345678899999999999999999998


Q ss_pred             H
Q 044155          227 K  227 (239)
Q Consensus       227 ~  227 (239)
                      .
T Consensus       453 ~  453 (501)
T PHA03210        453 A  453 (501)
T ss_pred             h
Confidence            6

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=5.1e-36  Score=236.30  Aligned_cols=197  Identities=19%  Similarity=0.291  Sum_probs=157.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++++||+++++|.+++...     ..++...+..++.|++.||+|||   +.+++|+||+
T Consensus        62 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~~l~~~l~~lH---~~~ivH~di~  133 (267)
T cd06628          62 ELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNY-----GAFEETLVRNFVRQILKGLNYLH---NRGIIHRDIK  133 (267)
T ss_pred             hcCCCCeeeEEEEEEeCCccEEEEEecCCCCHHHHHHhc-----cCccHHHHHHHHHHHHHHHHHHH---hcCcccccCC
Confidence            478999999999999999999999999999999999765     56788899999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-----ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-----HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |+||+++.++.++|+|||.++.......     .......++..|+|||.+.+..++.++|+||||+++|++++|..||.
T Consensus       134 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  213 (267)
T cd06628         134 GANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFP  213 (267)
T ss_pred             HHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCC
Confidence            9999999999999999998876542111     11123457889999999988888999999999999999999999986


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......                     .+..... ...+..+...+..+.+++.+||+.||.+||++.++++
T Consensus       214 ~~~~~~---------------------~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         214 DCTQLQ---------------------AIFKIGE-NASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             CccHHH---------------------HHHHHhc-cCCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence            422100                     0000000 0011111244567889999999999999999999886

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=3.6e-36  Score=239.61  Aligned_cols=200  Identities=20%  Similarity=0.305  Sum_probs=157.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++.+.+.+..++||||+++++|.+++.....   ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        56 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~---~~l~~~~~~~~~~qi~~~l~~lH---~~~iiH~dik  129 (285)
T cd05630          56 KVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGE---AGFEEGRAVFYAAEICCGLEDLH---QERIVYRDLK  129 (285)
T ss_pred             hCCCCCeeeeeEEEecCCEEEEEEEecCCCcHHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCC
Confidence            47899999999999999999999999999999998865432   45889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++........  .....|+..|+|||++.+..++.++|+||||+++|+|++|..||......
T Consensus       130 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~  207 (285)
T cd05630         130 PENILLDDHGHIRISDLGLAVHVPEGQT--IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK  207 (285)
T ss_pred             HHHEEECCCCCEEEeeccceeecCCCcc--ccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCcc
Confidence            9999999999999999998865432221  12346889999999999888999999999999999999999998643211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-----MVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~ell~  227 (239)
                      ...     .         ......... .    .......++.+.+++.+||+.||.+|||     ++|+++
T Consensus       208 ~~~-----~---------~~~~~~~~~-~----~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         208 IKR-----E---------EVERLVKEV-Q----EEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKE  260 (285)
T ss_pred             chH-----H---------HHHhhhhhh-h----hhcCccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence            000     0         000000000 0    0011234566889999999999999999     888887

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=2e-36  Score=229.63  Aligned_cols=200  Identities=22%  Similarity=0.311  Sum_probs=161.5

Q ss_pred             CCcccceeeEEEEeC----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            3 SHNHILKLIGCCLET----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         3 ~H~niv~l~~~~~~~----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      .|||||.+++++++.    ..+.+|||.++||.|.+.+...+.   ..++++++..|..||+.|+.|||   +.+|.|||
T Consensus       113 ~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~---~afTErea~eI~~qI~~Av~~lH---~~nIAHRD  186 (400)
T KOG0604|consen  113 GHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGD---QAFTEREASEIMKQIGLAVRYLH---SMNIAHRD  186 (400)
T ss_pred             CCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHccc---ccchHHHHHHHHHHHHHHHHHHH---hcchhhcc
Confidence            599999999998753    356799999999999999988755   67999999999999999999999   99999999


Q ss_pred             ccCcceeecCC---CceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           79 FKTSCILFNEE---NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        79 lk~~nil~~~~---~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |||+|+|....   ..+||+|||+++......  ...+.+.|+.|.|||++-..+++...|+||+|+++|-|+.|.+||.
T Consensus       187 lKpENLLyt~t~~na~lKLtDfGFAK~t~~~~--~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFY  264 (400)
T KOG0604|consen  187 LKPENLLYTTTSPNAPLKLTDFGFAKETQEPG--DLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFY  264 (400)
T ss_pred             CChhheeeecCCCCcceEecccccccccCCCc--cccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCccc
Confidence            99999998754   468999999998754332  2445667999999999999999999999999999999999999986


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..-.   .          ...    +.....+..+.+.  .++=+..++..+++|+.+|+.+|++|.|+.+++.
T Consensus       265 S~hg---~----------ais----pgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~  321 (400)
T KOG0604|consen  265 SNHG---L----------AIS----PGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMD  321 (400)
T ss_pred             ccCC---c----------cCC----hhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence            4321   0          000    1111222333332  2233577889999999999999999999999875

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=2.2e-36  Score=250.22  Aligned_cols=197  Identities=15%  Similarity=0.228  Sum_probs=151.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+.++...++||||+++|+|.+++.+.     ..+++..+..++.|++.||.|||   +.+|+|||||
T Consensus        57 ~~~h~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-----~~~~e~~~~~~~~qi~~al~~lH---~~~ivHrDlK  128 (382)
T cd05625          57 EADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM-----GIFPEDLARFYIAELTCAVESVH---KMGFIHRDIK  128 (382)
T ss_pred             hCCCCcCCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            468999999999999999999999999999999998765     45788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC----------------------------------------------cceeecc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE----------------------------------------------THITDTV  114 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~----------------------------------------------~~~~~~~  114 (239)
                      |+|||++.++.++|+|||++.......                                              .......
T Consensus       129 p~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (382)
T cd05625         129 PDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSL  208 (382)
T ss_pred             HHHEEECCCCCEEEeECCCCccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccc
Confidence            999999999999999999874321000                                              0001134


Q ss_pred             cccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhh--cCC
Q 044155          115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVV--EDV  192 (239)
Q Consensus       115 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  192 (239)
                      .||+.|+|||++.+..++.++|||||||++|||++|..||......                     +....+..  ...
T Consensus       209 ~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~---------------------~~~~~i~~~~~~~  267 (382)
T cd05625         209 VGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPL---------------------ETQMKVINWQTSL  267 (382)
T ss_pred             ccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCCHH---------------------HHHHHHHccCCCc
Confidence            6899999999999889999999999999999999999998643210                     00000100  000


Q ss_pred             CcHHHHHHHHHHHHHHhhhcCCCCCCCCC---HHHHHH
Q 044155          193 SSIEKEQQLHASAQVTFECIKDSPADRPS---MVDVAK  227 (239)
Q Consensus       193 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps---~~ell~  227 (239)
                      ..+.....+++..++|.+|+ .+|.+|++   ++++++
T Consensus       268 ~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~  304 (382)
T cd05625         268 HIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKA  304 (382)
T ss_pred             CCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhc
Confidence            11111234566788888876 49999997   887764

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=3.3e-36  Score=243.96  Aligned_cols=187  Identities=24%  Similarity=0.343  Sum_probs=149.2

Q ss_pred             CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcc
Q 044155            4 HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSC   83 (239)
Q Consensus         4 H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~n   83 (239)
                      |++|+++++++.+.+..++||||+++++|.+++...     ..+++..+..++.|++.||.|||   +++++||||||+|
T Consensus        60 ~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~-----~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~N  131 (324)
T cd05587          60 PPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-----GKFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDN  131 (324)
T ss_pred             CCceeeeEEEEEcCCEEEEEEcCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHH
Confidence            456889999999999999999999999999998765     56788999999999999999999   8999999999999


Q ss_pred             eeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccccc
Q 044155           84 ILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDL  163 (239)
Q Consensus        84 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~  163 (239)
                      |+++.++.++|+|||++....... .......|++.|+|||++.+..++.++|+||||+++|+|++|..||.....    
T Consensus       132 ill~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~----  206 (324)
T cd05587         132 VMLDAEGHIKIADFGMCKENIFGG-KTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE----  206 (324)
T ss_pred             eEEcCCCCEEEeecCcceecCCCC-CceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH----
Confidence            999999999999999876432211 122345689999999999988899999999999999999999999853221    


Q ss_pred             cccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          164 VCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                                       .+...........  .+...+..+.+++.+||..||.+|+++
T Consensus       207 -----------------~~~~~~i~~~~~~--~~~~~~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         207 -----------------DELFQSIMEHNVS--YPKSLSKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             -----------------HHHHHHHHcCCCC--CCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence                             0111111111110  111345678899999999999999976

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=6.7e-36  Score=237.84  Aligned_cols=208  Identities=24%  Similarity=0.306  Sum_probs=160.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..++||||+++++|.+++...     ..++......++.+++.||.|||.  ..+++|+|||
T Consensus        59 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~  131 (284)
T cd06620          59 ECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKG-----GPIPVEILGKIAVAVVEGLTYLYN--VHRIMHRDIK  131 (284)
T ss_pred             HcCCCCcceEeeeEecCCEEEEEEecCCCCCHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHH--hcCeeccCCC
Confidence            368999999999999999999999999999999988764     568899999999999999999993  3689999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++.......   .....++..|+|||++.+..++.++|+||||+++|++++|..||......
T Consensus       132 p~nil~~~~~~~~l~d~gl~~~~~~~~---~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~  208 (284)
T cd06620         132 PSNILVNSRGQIKLCDFGVSGELINSI---ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNID  208 (284)
T ss_pred             HHHEEECCCCcEEEccCCcccchhhhc---cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchh
Confidence            999999999999999999875432221   22456889999999998888999999999999999999999998754322


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      .+...          ......+..................+..+.+++.+||..||.+|||+.|++..
T Consensus       209 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~  266 (284)
T cd06620         209 DDGQD----------DPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAM  266 (284)
T ss_pred             hhhhh----------hhhHHHHHHHHHhhccCCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            11000          00011122222222111111112356678999999999999999999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=1.1e-36  Score=251.47  Aligned_cols=199  Identities=15%  Similarity=0.211  Sum_probs=152.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+.+++..++||||+++|+|.+++...     ..++...+..++.||+.||+|||   +.+|+|||||
T Consensus        57 ~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~-----~~~~~~~~~~~~~qi~~al~~lH---~~~ivHrDlk  128 (376)
T cd05598          57 EADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRL-----GIFEEDLARFYIAELTCAIESVH---KMGFIHRDIK  128 (376)
T ss_pred             hCCCCCcceEEEEEEcCCEEEEEEeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCC
Confidence            478999999999999999999999999999999999765     45788899999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCC------------------------------------------Ccceeecccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEG------------------------------------------ETHITDTVMGTL  118 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~------------------------------------------~~~~~~~~~~~~  118 (239)
                      |+||+++.++.++|+|||++..+...                                          .........|++
T Consensus       129 p~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  208 (376)
T cd05598         129 PDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTP  208 (376)
T ss_pred             HHHEEECCCCCEEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCc
Confidence            99999999999999999987432100                                          000011346899


Q ss_pred             cccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHH
Q 044155          119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKE  198 (239)
Q Consensus       119 ~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (239)
                      .|+|||++.+..++.++|||||||++|+|++|..||.........        .         .....  ..........
T Consensus       209 ~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~--------~---------~i~~~--~~~~~~~~~~  269 (376)
T cd05598         209 NYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQ--------L---------KVINW--ETTLHIPSQA  269 (376)
T ss_pred             cccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHHHHH--------H---------HHhcc--CccccCCCCC
Confidence            999999999888999999999999999999999998643211000        0         00000  0000000011


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCC---CHHHHHH
Q 044155          199 QQLHASAQVTFECIKDSPADRP---SMVDVAK  227 (239)
Q Consensus       199 ~~~~~~~~li~~cl~~dp~~Rp---s~~ell~  227 (239)
                      ..+..+.+++.+|+ .+|.+|+   |+.+++.
T Consensus       270 ~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~  300 (376)
T cd05598         270 KLSREASDLILRLC-CGAEDRLGKNGADEIKA  300 (376)
T ss_pred             CCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhC
Confidence            34556778888876 4999999   8898875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=3.1e-36  Score=241.68  Aligned_cols=222  Identities=16%  Similarity=0.197  Sum_probs=157.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..++||||++ ++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        60 ~l~h~nI~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~----~~~~~~~~~~~~~qi~~aL~~lH---~~~i~H~dlk  131 (301)
T cd07873          60 DLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCG----NSINMHNVKLFLFQLLRGLNYCH---RRKVLHRDLK  131 (301)
T ss_pred             hcCCCCcceEEEEEecCCeEEEEEeccc-cCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence            4789999999999999999999999997 69988887543    45788999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++....... .......+++.|+|||++.+. .++.++||||||+++|+|++|..||.....
T Consensus       132 p~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~  210 (301)
T cd07873         132 PQNLLINERGELKLADFGLARAKSIPT-KTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTV  210 (301)
T ss_pred             HHHEEECCCCcEEECcCcchhccCCCC-CcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999999999999999986543221 112233568899999988654 478899999999999999999999864332


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhh-----cCCC----cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH--H
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVV-----EDVS----SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK--K  228 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~--~  228 (239)
                      ...... .......+ ....+.........     ....    .......+..+.++|.+||+.||.+|||++|+++  +
T Consensus       211 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h~~  288 (301)
T cd07873         211 EEQLHF-IFRILGTP-TEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPY  288 (301)
T ss_pred             HHHHHH-HHHHcCCC-ChhhchhhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcCcc
Confidence            110000 00000000 00011111000000     0000    0011134567889999999999999999999987  4


Q ss_pred             HHHHH
Q 044155          229 LRQIY  233 (239)
Q Consensus       229 L~~l~  233 (239)
                      ++.+.
T Consensus       289 f~~~~  293 (301)
T cd07873         289 FHCLG  293 (301)
T ss_pred             ccccc
Confidence            44443

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=2.7e-36  Score=247.72  Aligned_cols=213  Identities=18%  Similarity=0.255  Sum_probs=151.2

Q ss_pred             CCCCcccceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++....      ..++||||++ ++|.+.+.       ..++...+..++.|++.||.|||   ++++
T Consensus        76 ~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~~~~qi~~~L~~LH---~~~i  144 (359)
T cd07876          76 CVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQVIH-------MELDHERMSYLLYQMLCGIKHLH---SAGI  144 (359)
T ss_pred             hCCCCCEeeeeeeeccCCCccccceeEEEEeCCC-cCHHHHHh-------ccCCHHHHHHHHHHHHHHHHHHH---hCCc
Confidence            478999999999986443      4689999997 67777664       34778888999999999999999   9999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      +||||||+||+++.++.++|+|||++.......  ......+++.|+|||++.+..++.++||||||+++|+|++|..||
T Consensus       145 vHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf  222 (359)
T cd07876         145 IHRDLKPSNIVVKSDCTLKILDFGLARTACTNF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIF  222 (359)
T ss_pred             ccCCCCHHHEEECCCCCEEEecCCCccccccCc--cCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999986542221  123456789999999999889999999999999999999999999


Q ss_pred             cccccccccc-------ccchhhhhhh-------hhcc------chhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCC
Q 044155          155 DLVKDVHDLV-------CPFSEYLKNC-------FEDN------RFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKD  214 (239)
Q Consensus       155 ~~~~~~~~~~-------~~~~~~~~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  214 (239)
                      ..........       .+..++....       ....      ...+....... ..........+..+.+++.+||..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~mL~~  301 (359)
T cd07876         223 QGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIF-PSESERDKLKTSQARDLLSKMLVI  301 (359)
T ss_pred             CCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhcccccc-ccccccccccchhHHHHHHHHhcc
Confidence            7543211100       0000000000       0000      00000000000 000000112346688999999999


Q ss_pred             CCCCCCCHHHHHH
Q 044155          215 SPADRPSMVDVAK  227 (239)
Q Consensus       215 dp~~Rps~~ell~  227 (239)
                      ||.+|||+.|+++
T Consensus       302 dP~~R~t~~e~l~  314 (359)
T cd07876         302 DPDKRISVDEALR  314 (359)
T ss_pred             CcccCCCHHHHhc
Confidence            9999999999987

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1.4e-35  Score=239.56  Aligned_cols=154  Identities=20%  Similarity=0.275  Sum_probs=124.0

Q ss_pred             CCCCcccceeeEEEEe--CCCceEEEEEccCCChhhhhhcCCCC----CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLE--TPIPILVFESVQYGTLWDRILGAPQP----HFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~--~~~~~iv~e~~~~~sL~~~l~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++..  +...+++|||+. ++|.+++......    ....++...+..++.|++.||.|||   +.++
T Consensus        54 ~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~i  129 (317)
T cd07868          54 ELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWV  129 (317)
T ss_pred             hcCCCCCcceeeeEecCCCcEEEEEEeccC-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCE
Confidence            4789999999999864  345789999996 7898887643211    1135889999999999999999999   8999


Q ss_pred             eeccccCcceee----cCCCceeEcccccccccCCCCc--ceeecccccccccCccccccC-CcccccchhhhhhHHHHH
Q 044155           75 VFRNFKTSCILF----NEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFEL  147 (239)
Q Consensus        75 ~H~dlk~~nil~----~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~  147 (239)
                      +||||||+|||+    +.++.+||+|||++........  .......+|+.|+|||++.+. .++.++||||+||++|+|
T Consensus       130 vHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el  209 (317)
T cd07868         130 LHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAEL  209 (317)
T ss_pred             EcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHH
Confidence            999999999999    4557899999999876533221  122345678999999998764 588999999999999999


Q ss_pred             hcCCCCccccc
Q 044155          148 LTGWDVSDLVK  158 (239)
Q Consensus       148 ~~g~~p~~~~~  158 (239)
                      ++|..||....
T Consensus       210 ~~g~~~f~~~~  220 (317)
T cd07868         210 LTSEPIFHCRQ  220 (317)
T ss_pred             HhCCCCccCCc
Confidence            99999996543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-37  Score=253.16  Aligned_cols=193  Identities=23%  Similarity=0.368  Sum_probs=163.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||++.+.|.|......|+|||||- ||-.|++....    +++.+.++..|+.+.+.||+|||   +++.+|||||
T Consensus        82 ~l~HPntieYkgCyLre~TaWLVMEYCl-GSAsDlleVhk----KplqEvEIAAi~~gaL~gLaYLH---S~~~IHRDiK  153 (948)
T KOG0577|consen   82 QLRHPNTIEYKGCYLREHTAWLVMEYCL-GSASDLLEVHK----KPLQEVEIAAITHGALQGLAYLH---SHNRIHRDIK  153 (948)
T ss_pred             hccCCCcccccceeeccchHHHHHHHHh-ccHHHHHHHHh----ccchHHHHHHHHHHHHHHHHHHH---HhhHHhhhcc
Confidence            5899999999999999999999999997 78889888764    67889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc---CCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT---GVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      ..|||+++.|.|||+|||.+...     .+...+.|||.|||||++..   +.|+-++||||||++..|+...++|+-.+
T Consensus       154 AGNILLse~g~VKLaDFGSAsi~-----~PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnM  228 (948)
T KOG0577|consen  154 AGNILLSEPGLVKLADFGSASIM-----APANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  228 (948)
T ss_pred             ccceEecCCCeeeeccccchhhc-----CchhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCc
Confidence            99999999999999999987554     33558899999999999874   45999999999999999999998886332


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                    ....++ ++..+.........++..|.+||..||..-|.+|||.++++.
T Consensus       229 N--------------------AMSALY-HIAQNesPtLqs~eWS~~F~~Fvd~CLqKipqeRptse~ll~  277 (948)
T KOG0577|consen  229 N--------------------AMSALY-HIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQERPTSEELLK  277 (948)
T ss_pred             h--------------------HHHHHH-HHHhcCCCCCCCchhHHHHHHHHHHHHhhCcccCCcHHHHhh
Confidence            2                    222222 233333333334588999999999999999999999998875

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=1.7e-35  Score=234.66  Aligned_cols=196  Identities=19%  Similarity=0.314  Sum_probs=157.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+.+++..++||||+++++|.+++..      .+++......++.|++.||++||   ..+++|+||+
T Consensus        58 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~------~~l~~~~~~~~~~~l~~~l~~lh---~~~ivH~dl~  128 (277)
T cd06640          58 QCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRA------GPFDEFQIATMLKEILKGLDYLH---SEKKIHRDIK  128 (277)
T ss_pred             hCCCCCEeeEEEEEEECCEEEEEEecCCCCcHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---hCCccCcCCC
Confidence            46899999999999999999999999999999999864      35778888999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++++|||++....... .......++..|+|||.+.+..++.++|+||||+++|+|++|..||......
T Consensus       129 p~Nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~  207 (277)
T cd06640         129 AANVLLSEQGDVKLADFGVAGQLTDTQ-IKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPM  207 (277)
T ss_pred             hhhEEEcCCCCEEEcccccceeccCCc-cccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChH
Confidence            999999999999999999986653322 1223345778899999998888999999999999999999999987543211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      ...                  ...    ............+..+.+++.+||+.+|.+||++.+++..
T Consensus       208 ~~~------------------~~~----~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         208 RVL------------------FLI----PKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             hHh------------------hhh----hcCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence            000                  000    0000111123456778999999999999999999999774

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4e-36  Score=242.73  Aligned_cols=194  Identities=24%  Similarity=0.350  Sum_probs=164.2

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++|||||++|++..+....|+|+|+=++|+|.|++-++.    ..+.+....+++.||..|+.|+|   ...+|||||||
T Consensus        74 VQHpNiVRLYEViDTQTKlyLiLELGD~GDl~DyImKHe----~Gl~E~La~kYF~QI~~AI~YCH---qLHVVHRDLKP  146 (864)
T KOG4717|consen   74 VQHPNIVRLYEVIDTQTKLYLILELGDGGDLFDYIMKHE----EGLNEDLAKKYFAQIVHAISYCH---QLHVVHRDLKP  146 (864)
T ss_pred             hcCcCeeeeeehhcccceEEEEEEecCCchHHHHHHhhh----ccccHHHHHHHHHHHHHHHHHHh---hhhhhcccCCc
Confidence            489999999999999999999999999999999998765    56889999999999999999999   89999999999


Q ss_pred             cceeecC-CCceeEcccccccccCCCCcceeecccccccccCccccccCCcc-cccchhhhhhHHHHHhcCCCCcccccc
Q 044155           82 SCILFNE-ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFN-EKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        82 ~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      +|+++.. -|-+||.|||++..+..+.  ...+.+|+.+|-|||++.+..|. ++.||||||+|+|.++.|+.||+...+
T Consensus       147 ENVVFFEKlGlVKLTDFGFSNkf~PG~--kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeAND  224 (864)
T KOG4717|consen  147 ENVVFFEKLGLVKLTDFGFSNKFQPGK--KLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEAND  224 (864)
T ss_pred             ceeEEeeecCceEeeeccccccCCCcc--hhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccc
Confidence            9998765 5789999999998776554  35677899999999999998876 578999999999999999999875432


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                     +....++.-.+.  .+...+.+.++||.+||.+||.+|.|.+|+..
T Consensus       225 S---------------------ETLTmImDCKYt--vPshvS~eCrdLI~sMLvRdPkkRAslEeI~s  269 (864)
T KOG4717|consen  225 S---------------------ETLTMIMDCKYT--VPSHVSKECRDLIQSMLVRDPKKRASLEEIVS  269 (864)
T ss_pred             h---------------------hhhhhhhccccc--CchhhhHHHHHHHHHHHhcCchhhccHHHHhc
Confidence            2                     222233333332  23467788999999999999999999999875

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=1.5e-35  Score=236.73  Aligned_cols=198  Identities=20%  Similarity=0.252  Sum_probs=153.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+...+..++||||+++++|..++.+..    ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        65 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~----~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlk  137 (292)
T cd06644          65 TCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELD----RGLTEPQIQVICRQMLEALQYLH---SMKIIHRDLK  137 (292)
T ss_pred             hCCCCcEeeeEEEEEeCCeEEEEEecCCCCcHHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHh---cCCeeecCCC
Confidence            4789999999999999999999999999999988876543    45789999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc-----cCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |+||+++.++.++|+|||.+....... .......+++.|+|||.+.     ...++.++|+||||+++|+|++|..||.
T Consensus       138 p~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~  216 (292)
T cd06644         138 AGNVLLTLDGDIKLADFGVSAKNVKTL-QRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHH  216 (292)
T ss_pred             cceEEEcCCCCEEEccCccceeccccc-cccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCc
Confidence            999999999999999999876432221 1122445788999999885     3446789999999999999999998875


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCC-CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......                     .......... ....+...+..+.+++.+||..+|++||+++++++
T Consensus       217 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         217 ELNPMR---------------------VLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             cccHHH---------------------HHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            422100                     0000000000 00011234456889999999999999999999976

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-36  Score=252.34  Aligned_cols=187  Identities=23%  Similarity=0.355  Sum_probs=161.7

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||.++.++..|.+..+.++||||+.||++...++.      ..+++..++-++..|+.||+|||   +++|++||||.+
T Consensus       427 ~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~~~~------~~F~e~rarfyaAev~l~L~fLH---~~~IIYRDlKLd  497 (694)
T KOG0694|consen  427 RHPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHHIHT------DVFSEPRARFYAAEVVLGLQFLH---ENGIIYRDLKLD  497 (694)
T ss_pred             cCCeEeecccccccCCeEEEEEEecCCCcEEEEEec------ccccHHHHHHHHHHHHHHHHHHH---hcCceeeecchh
Confidence            699999999999999999999999999996544433      56889999999999999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      |||++.+|.+||+|||+++... .....+++++||+.|+|||++.+..|+...|-|||||++|||+.|..||.       
T Consensus       498 NiLLD~eGh~kiADFGlcKe~m-~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~-------  569 (694)
T KOG0694|consen  498 NLLLDTEGHVKIADFGLCKEGM-GQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFP-------  569 (694)
T ss_pred             heEEcccCcEEecccccccccC-CCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCC-------
Confidence            9999999999999999998653 23346789999999999999999999999999999999999999987774       


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                                    .++-.++.++++...+.  .+...+.+..+++.++|.++|++|.-+
T Consensus       570 --------------gddEee~FdsI~~d~~~--yP~~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  570 --------------GDDEEEVFDSIVNDEVR--YPRFLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             --------------CCCHHHHHHHHhcCCCC--CCCcccHHHHHHHHHHhccCcccccCC
Confidence                          34445666666655533  234677889999999999999999954

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=1.1e-35  Score=232.95  Aligned_cols=201  Identities=25%  Similarity=0.429  Sum_probs=157.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++.+.+..+++||++++++|.+++.....   ..+++..+..++.|++.||++||   +.+++|+|||
T Consensus        57 ~l~~~~i~~~~~~~~~~~~~~~i~e~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~ql~~~l~~lh---~~~~~h~dl~  130 (258)
T smart00219       57 KLDHPNIVKLLGVCTEEEPLMIVMEYMEGGDLLDYLRKNRP---KELSLSDLLSFALQIARGMEYLE---SKNFIHRDLA  130 (258)
T ss_pred             hcCCCchheEEEEEcCCCeeEEEEeccCCCCHHHHHHhhhh---ccCCHHHHHHHHHHHHHHHHHHh---cCCeeecccc
Confidence            36899999999999999999999999999999999976532   22899999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+...............+++.|+|||.+.+..++.++|+||||+++++|++ |..||.....
T Consensus       131 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~  210 (258)
T smart00219      131 ARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSN  210 (258)
T ss_pred             cceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            999999999999999999987654332222212236788999999988889999999999999999998 6677643110


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                                           ............ .......+..+.+++.+||..||.+|||+.++++.|
T Consensus       211 ---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      211 ---------------------EEVLEYLKKGYR-LPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             ---------------------HHHHHHHhcCCC-CCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence                                 011111111110 011113566789999999999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=9.3e-36  Score=233.45  Aligned_cols=198  Identities=21%  Similarity=0.300  Sum_probs=159.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++|+||+.+++|.+.+.....   ..++...+..++.|++.|+.|||   +.+++|+||+
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~l~  128 (256)
T cd08218          55 NMKHPNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRG---VLFPEDQILDWFVQICLALKHVH---DRKILHRDIK  128 (256)
T ss_pred             hCCCCCeeeeEeeecCCCeEEEEEecCCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCC
Confidence            47899999999999999999999999999999999876432   35788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++++|||.+........ ......+++.|+|||++.+...+.++|+||||++++++++|..||....  
T Consensus       129 ~~nil~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~--  205 (256)
T cd08218         129 SQNIFLTKDGTIKLGDFGIARVLNSTVE-LARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGN--  205 (256)
T ss_pred             HHHEEEcCCCCEEEeeccceeecCcchh-hhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCC--
Confidence            9999999999999999999876533221 1223347788999999988888999999999999999999988874211  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                         ..+.......+... ..+...+..+.++|.+||+.+|.+||++.++++
T Consensus       206 -------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         206 -------------------MKNLVLKIIRGSYP-PVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             -------------------HHHHHHHHhcCCCC-CCcccCCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence                               11122222222111 112245677899999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=8.1e-36  Score=235.79  Aligned_cols=197  Identities=21%  Similarity=0.294  Sum_probs=151.8

Q ss_pred             CCcccceeeEEEEeC------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            3 SHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         3 ~H~niv~l~~~~~~~------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +||||+++++++...      ...+++|||+.+++|.+++.....   ..+++..+..++.|++.|++|||   +++++|
T Consensus        61 ~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~---~~l~~~~~~~~~~qi~~~l~~LH---~~~ivh  134 (272)
T cd06637          61 HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKG---NTLKEEWIAYICREILRGLSHLH---QHKVIH  134 (272)
T ss_pred             CCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCCcc
Confidence            699999999998753      347899999999999999886432   46889999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-----CCcccccchhhhhhHHHHHhcCC
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-----GVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      +|+||+||+++.++.++|+|||++....... .......|+..|+|||++.+     ..++.++|+||||+++|+|++|.
T Consensus       135 ~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~  213 (272)
T cd06637         135 RDIKGQNVLLTENAEVKLVDFGVSAQLDRTV-GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGA  213 (272)
T ss_pred             CCCCHHHEEECCCCCEEEccCCCceeccccc-ccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCC
Confidence            9999999999999999999999986543221 12234568889999998863     35778999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .||..........       .              ..............+..+.+++.+||..+|.+|||+.++++
T Consensus       214 ~p~~~~~~~~~~~-------~--------------~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         214 PPLCDMHPMRALF-------L--------------IPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             CCccccCHHHHHH-------H--------------HhcCCCCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence            9885322110000       0              00000000011134467889999999999999999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=1.3e-35  Score=235.67  Aligned_cols=198  Identities=23%  Similarity=0.315  Sum_probs=153.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..++||||+++++|..+         ..+++.....++.|++.||.|||   +.+++|+|||
T Consensus        55 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~---------~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk  122 (279)
T cd06619          55 KCDSPYIIGFYGAFFVENRISICTEFMDGGSLDVY---------RKIPEHVLGRIAVAVVKGLTYLW---SLKILHRDVK  122 (279)
T ss_pred             hCCCCCeeeEEEEEEECCEEEEEEecCCCCChHHh---------hcCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCC
Confidence            47899999999999999999999999999988543         24678888899999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++.......   .....++..|+|||.+.+..++.++|+||||+++|+|++|..||......
T Consensus       123 p~Nill~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~  199 (279)
T cd06619         123 PSNMLVNTRGQVKLCDFGVSTQLVNSI---AKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKN  199 (279)
T ss_pred             HHHEEECCCCCEEEeeCCcceeccccc---ccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhccc
Confidence            999999999999999999986553221   23456888999999999888999999999999999999999998653322


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .....+              ....................+.++.+++.+||..+|.+||+++|+++
T Consensus       200 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~  252 (279)
T cd06619         200 QGSLMP--------------LQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPENLMD  252 (279)
T ss_pred             ccccch--------------HHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence            111100              00000000010000001134567899999999999999999999976

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-37  Score=249.19  Aligned_cols=212  Identities=20%  Similarity=0.276  Sum_probs=164.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ||+||||++++|+|......++|+||+++|+|.+++.++..   ..+.......++.||+.|++||.   +.++||||+.
T Consensus       591 qLkhPNIveLvGVC~~DePicmI~EYmEnGDLnqFl~ahea---pt~~t~~~vsi~tqiasgmaYLe---s~nfVHrd~a  664 (807)
T KOG1094|consen  591 RLKHPNIVELLGVCVQDDPLCMITEYMENGDLNQFLSAHEL---PTAETAPGVSICTQIASGMAYLE---SLNFVHRDLA  664 (807)
T ss_pred             ccCCCCeeEEEeeeecCCchHHHHHHHhcCcHHHHHHhccC---cccccchhHHHHHHHHHHHHHHH---hhchhhcccc
Confidence            68999999999999999999999999999999999988643   22345556679999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcce-eecccccccccCccccccCCcccccchhhhhhHHHHHhc--CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHI-TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT--GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~--g~~p~~~~  157 (239)
                      ++|+|++.++.+||+|||+++.+-.+..+. .+...-+..|||||.+..++++.++|+|+||+++||+++  ...||+.+
T Consensus       665 ~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~l  744 (807)
T KOG1094|consen  665 TRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQL  744 (807)
T ss_pred             ccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhh
Confidence            999999999999999999998665554443 344556889999999999999999999999999999876  45666544


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      .+......     ....+.....          ..-...+.-++..+.++|.+||++|-.+|||++++...|++..
T Consensus       745 t~e~vven-----~~~~~~~~~~----------~~~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~~  805 (807)
T KOG1094|consen  745 TDEQVVEN-----AGEFFRDQGR----------QVVLSRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQEDA  805 (807)
T ss_pred             hHHHHHHh-----hhhhcCCCCc----------ceeccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHhc
Confidence            32110000     0000000000          0001112245677889999999999999999999999988753

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=8.7e-36  Score=234.69  Aligned_cols=201  Identities=24%  Similarity=0.318  Sum_probs=159.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~i~H~dl   79 (239)
                      +++||||+++++++...+..++++||+++++|.+++....    ..++......++.|++.|+.|||   + .+++|+||
T Consensus        55 ~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~lH---~~~~i~H~dl  127 (265)
T cd06605          55 KCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQ----GRIPERILGKIAVAVLKGLTYLH---EKHKIIHRDV  127 (265)
T ss_pred             HCCCCchhhhheeeecCCEEEEEEEecCCCcHHHHHHHcc----CCCCHHHHHHHHHHHHHHHHHHc---CCCCeecCCC
Confidence            3689999999999999999999999999999999997653    46788999999999999999999   7 99999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||+||+++.++.++|+|||.+.......   .....++..|+|||.+.+..++.++|+||||++++++++|..||.....
T Consensus       128 ~~~ni~~~~~~~~~l~d~g~~~~~~~~~---~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~  204 (265)
T cd06605         128 KPSNILVNSRGQIKLCDFGVSGQLVNSL---AKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPEND  204 (265)
T ss_pred             CHHHEEECCCCCEEEeecccchhhHHHH---hhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccc
Confidence            9999999999999999999876542221   1125678899999999888899999999999999999999999864322


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                ....+..................+..+.++|.+||..||.+|||+.+++.
T Consensus       205 ~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  256 (265)
T cd06605         205 PP----------------DGIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLE  256 (265)
T ss_pred             cc----------------ccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence            00                01111111111111111111125677899999999999999999999986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=2.9e-35  Score=237.60  Aligned_cols=153  Identities=20%  Similarity=0.273  Sum_probs=123.2

Q ss_pred             CCCCcccceeeEEEEe--CCCceEEEEEccCCChhhhhhcCCC----CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLE--TPIPILVFESVQYGTLWDRILGAPQ----PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~--~~~~~iv~e~~~~~sL~~~l~~~~~----~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++..  +...++|+||+. ++|.+++.....    .....+++..+..++.|++.||.|||   +.++
T Consensus        54 ~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~i  129 (317)
T cd07867          54 ELKHPNVIALQKVFLSHSDRKVWLLFDYAE-HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLH---ANWV  129 (317)
T ss_pred             hCCCCCeeeEEEEEeccCCCeEEEEEeeeC-CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHH---hCCE
Confidence            4789999999999864  456789999997 688888754321    11135788899999999999999999   8999


Q ss_pred             eeccccCcceee----cCCCceeEcccccccccCCCCc--ceeecccccccccCccccccC-CcccccchhhhhhHHHHH
Q 044155           75 VFRNFKTSCILF----NEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFEL  147 (239)
Q Consensus        75 ~H~dlk~~nil~----~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~  147 (239)
                      +|+||||+||++    +.++.+||+|||+++.......  .......+++.|+|||++.+. .++.++||||||+++|+|
T Consensus       130 vH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el  209 (317)
T cd07867         130 LHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAEL  209 (317)
T ss_pred             EcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHH
Confidence            999999999999    4567899999999876533221  122345678999999998764 578999999999999999


Q ss_pred             hcCCCCcccc
Q 044155          148 LTGWDVSDLV  157 (239)
Q Consensus       148 ~~g~~p~~~~  157 (239)
                      ++|..||...
T Consensus       210 ~tg~~~f~~~  219 (317)
T cd07867         210 LTSEPIFHCR  219 (317)
T ss_pred             HhCCCCcccc
Confidence            9999998643

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=9.4e-36  Score=234.60  Aligned_cols=199  Identities=20%  Similarity=0.318  Sum_probs=156.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++.+.+..++++||+++++|.+++.+.     ..++......++.|++.||+|||   +.+++|+||+
T Consensus        58 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~  129 (265)
T cd06631          58 SLKHVNIVQYLGTCLDDNTISIFMEFVPGGSISSILNRF-----GPLPEPVFCKYTKQILDGVAYLH---NNCVVHRDIK  129 (265)
T ss_pred             hcCCCCEeeEeeEeecCCeEEEEEecCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcC
Confidence            468999999999999999999999999999999999765     45788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC-----cceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE-----THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |+||+++.++.++|+|||.+.......     ........++..|+|||++.+..++.++|+||||+++|++++|..||.
T Consensus       130 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~  209 (265)
T cd06631         130 GNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLA  209 (265)
T ss_pred             HHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccc
Confidence            999999999999999999886542111     111223457889999999998888999999999999999999999985


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ........                    .............+...+..+.+++.+||..+|.+||++.+++.
T Consensus       210 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         210 SMDRLAAM--------------------FYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             cCChHHHH--------------------HHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            43211000                    00000000000111234567899999999999999999999875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=7.2e-36  Score=239.18  Aligned_cols=197  Identities=18%  Similarity=0.238  Sum_probs=155.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..+...++||||+++++|.+++..      ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        72 ~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~------~~~~~~~~~~~~~~l~~~L~~LH---~~~i~H~dL~  142 (297)
T cd06656          72 ENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE------TCMDEGQIAAVCRECLQALDFLH---SNQVIHRDIK  142 (297)
T ss_pred             hCCCCCEeeEEEEEecCCEEEEeecccCCCCHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            36899999999999999999999999999999999865      35788899999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+....... .......+++.|+|||.+.+..++.++|+||||+++|++++|..||......
T Consensus       143 p~Nili~~~~~~~l~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~  221 (297)
T cd06656         143 SDNILLGMDGSVKLTDFGFCAQITPEQ-SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL  221 (297)
T ss_pred             HHHEEECCCCCEEECcCccceEccCCc-cCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcc
Confidence            999999999999999999886543221 1122345788899999998888999999999999999999999998532211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .....        ..            .........+...+..+.+++.+||..+|.+|||++++++
T Consensus       222 ~~~~~--------~~------------~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         222 RALYL--------IA------------TNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             hheee--------ec------------cCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            10000        00            0000000011234566789999999999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-35  Score=235.67  Aligned_cols=198  Identities=20%  Similarity=0.289  Sum_probs=155.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..+...++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        58 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~  130 (280)
T cd06611          58 ECKHPNIVGLYEAYFYENKLWILIEFCDGGALDSIMLELE----RGLTEPQIRYVCRQMLEALNFLH---SHKVIHRDLK  130 (280)
T ss_pred             hCCCCceeEEEEEEecCCeEEEEeeccCCCcHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            4789999999999999999999999999999999887643    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc-----cCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |+||+++.++.++|+|||.+....... .......+++.|+|||.+.     ...++.++|+||||+++|+|++|..||.
T Consensus       131 p~nili~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~  209 (280)
T cd06611         131 AGNILLTLDGDVKLADFGVSAKNKSTL-QKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHH  209 (280)
T ss_pred             hhhEEECCCCCEEEccCccchhhcccc-cccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcc
Confidence            999999999999999999876543221 1223445788999999874     3446789999999999999999999986


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCC-CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......                     .......... ....+...+..+.+++..||..+|.+|||+.++++
T Consensus       210 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (280)
T cd06611         210 ELNPMR---------------------VLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLK  261 (280)
T ss_pred             cCCHHH---------------------HHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHHhc
Confidence            432110                     0000000000 00011234567889999999999999999999986

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=5.9e-36  Score=239.14  Aligned_cols=198  Identities=16%  Similarity=0.271  Sum_probs=155.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+..++..++||||+++++|.+++..      ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        75 ~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~------~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlk  145 (292)
T cd06658          75 DYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTH------TRMNEEQIATVCLSVLRALSYLH---NQGVIHRDIK  145 (292)
T ss_pred             hCCCCcHHHHHHheecCCeEEEEEeCCCCCcHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCC
Confidence            36899999999999999999999999999999988854      45788899999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++....... .......++..|+|||.+.+..++.++|+||||+++|++++|..||......
T Consensus       146 p~Nill~~~~~~kL~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~  224 (292)
T cd06658         146 SDSILLTSDGRIKLSDFGFCAQVSKEV-PKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPL  224 (292)
T ss_pred             HHHEEEcCCCCEEEccCcchhhccccc-ccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            999999999999999999886543221 1122345788999999998888999999999999999999999987532210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      ..                  .............  .....+..+.+++..||..||++|||++++++.
T Consensus       225 ~~------------------~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         225 QA------------------MRRIRDNLPPRVK--DSHKVSSVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             HH------------------HHHHHhcCCCccc--cccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            00                  0000000111100  111345678899999999999999999999873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=5.3e-36  Score=235.10  Aligned_cols=201  Identities=27%  Similarity=0.431  Sum_probs=156.6

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++......++|||++++++|.+++...     ..++...+..++.|++.||.+||   +.+++|+||||
T Consensus        55 l~~~~i~~~~~~~~~~~~~~~v~~~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~L~~Lh---~~~i~H~dikp  126 (260)
T PF00069_consen   55 LRHPNIVQILDVFQDDNYLYIVMEYCPGGSLQDYLQKN-----KPLSEEEILKIAYQILEALAYLH---SKGIVHRDIKP  126 (260)
T ss_dssp             HTBTTBCHEEEEEEESSEEEEEEEEETTEBHHHHHHHH-----SSBBHHHHHHHHHHHHHHHHHHH---HTTEEESSBSG
T ss_pred             cccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccc---ccccccccccc
Confidence            58999999999999999999999999988999999843     67899999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc-cCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-TGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      +||+++.++.++|+|||.+.... ..........++..|+|||.+. +...+.++|+||||+++++|++|..||......
T Consensus       127 ~NIl~~~~~~~~l~Dfg~~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~  205 (260)
T PF00069_consen  127 ENILLDENGEVKLIDFGSSVKLS-ENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSD  205 (260)
T ss_dssp             GGEEESTTSEEEESSGTTTEEST-STTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHH
T ss_pred             ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            99999999999999999987531 1122334556788999999998 788999999999999999999999988643100


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...        .      ................  .......+.+++.+||+.||++|||+.++++
T Consensus       206 ~~~--------~------~~~~~~~~~~~~~~~~--~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  206 DQL--------E------IIEKILKRPLPSSSQQ--SREKSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             HHH--------H------HHHHHHHTHHHHHTTS--HTTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             hhh--------h------hhhhcccccccccccc--cchhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            000        0      0000000000000000  0011267899999999999999999999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=4e-36  Score=246.41  Aligned_cols=212  Identities=17%  Similarity=0.223  Sum_probs=151.5

Q ss_pred             CCCCcccceeeEEEEeC------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++...      ...++||||++ +++.+.+.       ..++...+..++.|++.||.|||   ++++
T Consensus        72 ~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~-------~~l~~~~~~~~~~qi~~aL~~LH---~~gi  140 (355)
T cd07874          72 CVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQVIQ-------MELDHERMSYLLYQMLCGIKHLH---SAGI  140 (355)
T ss_pred             HhCCCchhceeeeeeccccccccceeEEEhhhhc-ccHHHHHh-------hcCCHHHHHHHHHHHHHHHHHHH---hCCc
Confidence            36899999999988643      24689999997 67777774       34778888999999999999999   9999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      +||||||+||+++.++.+||+|||++.......  ......++..|+|||++.+..++.++||||||+++|+|++|..||
T Consensus       141 vHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf  218 (355)
T cd07874         141 IHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILF  218 (355)
T ss_pred             ccCCCChHHEEECCCCCEEEeeCcccccCCCcc--ccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999987543221  123456889999999999888999999999999999999999998


Q ss_pred             cccccccccc-------ccchhhhhhhhhccchhhhhhh-----------hhhcC---CCcHHHHHHHHHHHHHHhhhcC
Q 044155          155 DLVKDVHDLV-------CPFSEYLKNCFEDNRFTEIVDH-----------IVVED---VSSIEKEQQLHASAQVTFECIK  213 (239)
Q Consensus       155 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~~~~~~~~~li~~cl~  213 (239)
                      ..........       .+..++.....  .........           .....   .........+..+.+++.+||.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~  296 (355)
T cd07874         219 PGRDYIDQWNKVIEQLGTPCPEFMKKLQ--PTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLV  296 (355)
T ss_pred             CCCCHHHHHHHHHHHhCCCCHHHHHhhc--HHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhc
Confidence            6533211110       00000000000  000000000           00000   0000111234567899999999


Q ss_pred             CCCCCCCCHHHHHH
Q 044155          214 DSPADRPSMVDVAK  227 (239)
Q Consensus       214 ~dp~~Rps~~ell~  227 (239)
                      .||.+|||+.|+++
T Consensus       297 ~dP~~Rps~~ell~  310 (355)
T cd07874         297 IDPAKRISVDEALQ  310 (355)
T ss_pred             CCchhcCCHHHHhc
Confidence            99999999999997

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=5.6e-36  Score=246.29  Aligned_cols=213  Identities=17%  Similarity=0.238  Sum_probs=151.8

Q ss_pred             CCCCcccceeeEEEEeC------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++...      ...++||||++ ++|.+.+.       ..++...+..++.|++.||+|||   ++++
T Consensus        79 ~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~~~~qi~~aL~~LH---~~~i  147 (364)
T cd07875          79 CVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD-ANLCQVIQ-------MELDHERMSYLLYQMLCGIKHLH---SAGI  147 (364)
T ss_pred             hcCCCCccccceeecccccccccCeEEEEEeCCC-CCHHHHHH-------hcCCHHHHHHHHHHHHHHHHHHh---hCCe
Confidence            36899999999987643      34689999997 68877774       34678888999999999999999   9999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      +||||||+||+++.++.++|+|||++.......  ......++..|+|||++.+..++.++||||||+++|+|++|+.||
T Consensus       148 vH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf  225 (364)
T cd07875         148 IHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLF  225 (364)
T ss_pred             ecCCCCHHHEEECCCCcEEEEeCCCccccCCCC--cccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCC
Confidence            999999999999999999999999987543221  123456889999999999989999999999999999999999999


Q ss_pred             cccccccccc-------ccchhhhhhhh-------hcc------chhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCC
Q 044155          155 DLVKDVHDLV-------CPFSEYLKNCF-------EDN------RFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKD  214 (239)
Q Consensus       155 ~~~~~~~~~~-------~~~~~~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  214 (239)
                      ..........       .+..++.....       ...      .......... ..............+.+++.+||..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dll~~mL~~  304 (364)
T cd07875         226 PGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVL-FPADSEHNKLKASQARDLLSKMLVI  304 (364)
T ss_pred             CCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCcccc-ccccccccccccHHHHHHHHHhcCc
Confidence            7543221110       00000000000       000      0000000000 0000000112345688999999999


Q ss_pred             CCCCCCCHHHHHH
Q 044155          215 SPADRPSMVDVAK  227 (239)
Q Consensus       215 dp~~Rps~~ell~  227 (239)
                      ||.+|||+.|+++
T Consensus       305 dP~~R~t~~e~L~  317 (364)
T cd07875         305 DASKRISVDEALQ  317 (364)
T ss_pred             CcccCCCHHHHhc
Confidence            9999999999987

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-35  Score=239.72  Aligned_cols=200  Identities=20%  Similarity=0.274  Sum_probs=157.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+.++...++||||+.+++|.+++.....   ..+++.....++.|++.||+|||   +.+++|+|||
T Consensus        57 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk  130 (316)
T cd05574          57 TLDHPFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPG---KCLSEEVARFYAAEVLLALEYLH---LLGIVYRDLK  130 (316)
T ss_pred             hCCCCCchhheeeeecCCEEEEEEEecCCCCHHHHHHhCCC---CccCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence            46899999999999999999999999999999999876533   56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc----------------------------ceeecccccccccCccccccCCcc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET----------------------------HITDTVMGTLGYCAPEYMRTGVFN  132 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~----------------------------~~~~~~~~~~~y~aPE~~~~~~~~  132 (239)
                      |+||+++.++.++|+|||++........                            .......|+..|+|||++.+..++
T Consensus       131 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~  210 (316)
T cd05574         131 PENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHG  210 (316)
T ss_pred             hHHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCC
Confidence            9999999999999999998765422110                            011234578889999999988899


Q ss_pred             cccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhc
Q 044155          133 EKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECI  212 (239)
Q Consensus       133 ~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  212 (239)
                      .++||||||+++|++++|..||.......                     ..................+..+.+++.+||
T Consensus       211 ~~~Di~slG~ll~~l~~g~~pf~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  269 (316)
T cd05574         211 SAVDWWTLGILLYEMLYGTTPFKGSNRDE---------------------TFSNILKKEVTFPGSPPVSSSARDLIRKLL  269 (316)
T ss_pred             chHHHHHHHHHHHHHhhCCCCCCCCchHH---------------------HHHHHhcCCccCCCccccCHHHHHHHHHHc
Confidence            99999999999999999999986432110                     000111111111111125678999999999


Q ss_pred             CCCCCCCCC----HHHHHH
Q 044155          213 KDSPADRPS----MVDVAK  227 (239)
Q Consensus       213 ~~dp~~Rps----~~ell~  227 (239)
                      ..||.+|||    +++++.
T Consensus       270 ~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         270 VKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             cCCHhHCCCchhhHHHHHc
Confidence            999999999    777776

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=2.2e-35  Score=232.94  Aligned_cols=199  Identities=23%  Similarity=0.330  Sum_probs=152.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcC--CHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPL--LLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~--~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++|+||+++++++..++..++|+||+++++|.+++....    ..+  +...+..++.|++.||+|||   +.+++|+|
T Consensus        61 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~h~d  133 (268)
T cd06624          61 YLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKW----GPLKDNEQTIIFYTKQILEGLKYLH---DNQIVHRD  133 (268)
T ss_pred             hcCCCCeeeeeeeeccCCEEEEEEecCCCCCHHHHHHHhc----ccCCCcHHHHHHHHHHHHHHHHHHH---HCCEeecC
Confidence            4789999999999999999999999999999999997643    233  77888889999999999999   89999999


Q ss_pred             ccCcceeecC-CCceeEcccccccccCCCCcceeecccccccccCccccccCC--cccccchhhhhhHHHHHhcCCCCcc
Q 044155           79 FKTSCILFNE-ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV--FNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        79 lk~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~--~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |||+||+++. ++.++|+|||.+....... .......+++.|+|||.+....  ++.++|+||||+++|++++|..||.
T Consensus       134 l~p~nil~~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~  212 (268)
T cd06624         134 IKGDNVLVNTYSGVVKISDFGTSKRLAGIN-PCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFI  212 (268)
T ss_pred             CCHHHEEEcCCCCeEEEecchhheecccCC-CccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCc
Confidence            9999999976 6689999999876543221 1122345788999999986543  7889999999999999999999875


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .........                   ....... .....+...++.+.+++.+||..+|.+|||+.++++
T Consensus       213 ~~~~~~~~~-------------------~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         213 ELGEPQAAM-------------------FKVGMFK-IHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             cccChhhhH-------------------hhhhhhc-cCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence            432110000                   0000000 001112244567889999999999999999999876

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=2.4e-35  Score=231.18  Aligned_cols=198  Identities=19%  Similarity=0.306  Sum_probs=156.1

Q ss_pred             CCCCcccceeeEEEEeC-CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~-~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++|+||+++++.+... ...++++||+++++|.+++.....   ..+++.++..++.|++.|+.+||   +.+++|+||
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~---~~l~~~~~~~~~~~l~~~l~~lH---~~~i~H~di  128 (257)
T cd08223          55 QLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKG---KLLPENQVVEWFVQIAMALQYLH---EKHILHRDL  128 (257)
T ss_pred             hCCCCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCC
Confidence            46899999999987643 457899999999999999976432   45889999999999999999999   899999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||+||+++.++.++|+|||++....... .......+++.|+|||+..+..++.++|+||||++++++++|..||.....
T Consensus       129 ~p~nil~~~~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~  207 (257)
T cd08223         129 KTQNVFLTRTNIIKVGDLGIARVLENQC-DMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDM  207 (257)
T ss_pred             CchhEEEecCCcEEEecccceEEecccC-CccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH
Confidence            9999999999999999999987653221 222344578899999999988899999999999999999999888753210


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           ............. ..+...+..+.+++.+||+.+|.+|||+.++++
T Consensus       208 ---------------------~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  253 (257)
T cd08223         208 ---------------------NSLVYRIIEGKLP-PMPKDYSPELGELIATMLSKRPEKRPSVKSILR  253 (257)
T ss_pred             ---------------------HHHHHHHHhcCCC-CCccccCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence                                 0111111111111 112245677899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=2.4e-35  Score=239.32  Aligned_cols=228  Identities=19%  Similarity=0.217  Sum_probs=160.2

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||++++++|..+...++|+||+.+++|.+++.....   ..+++..+..++.|++.||+|||   +.+++|+||||
T Consensus        56 l~h~niv~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~qi~~aL~~lH---~~~ivHrDlkp  129 (328)
T cd08226          56 FRHPNIMTSWTVFTTGSWLWVISPFMAYGSANSLLKTYFP---EGMSEALIGNILFGALRGLNYLH---QNGYIHRNIKA  129 (328)
T ss_pred             CCCCCcceEeeeEecCCceEEEEecccCCCHHHHHHhhcc---cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCH
Confidence            7899999999999999999999999999999999876532   45888999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcc------eeecccccccccCccccccC--CcccccchhhhhhHHHHHhcCCCC
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETH------ITDTVMGTLGYCAPEYMRTG--VFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~--~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      +||+++.++.++++||+...........      ......++..|+|||++.+.  .++.++||||||+++|++++|..|
T Consensus       130 ~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p  209 (328)
T cd08226         130 SHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVP  209 (328)
T ss_pred             HHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence            9999999999999999754322111100      01122345679999998763  478999999999999999999999


Q ss_pred             ccccccccccccc-------------chhhhhhhhhcc-chh----hhh-h-----hhhhcCCCcHHHHHHHHHHHHHHh
Q 044155          154 SDLVKDVHDLVCP-------------FSEYLKNCFEDN-RFT----EIV-D-----HIVVEDVSSIEKEQQLHASAQVTF  209 (239)
Q Consensus       154 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~----~~~-~-----~~~~~~~~~~~~~~~~~~~~~li~  209 (239)
                      |............             +........... ...    +.. .     ...............+..+.+++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  289 (328)
T cd08226         210 FQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVE  289 (328)
T ss_pred             CCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHH
Confidence            8754321110000             000000000000 000    000 0     000011112223456788999999


Q ss_pred             hhcCCCCCCCCCHHHHHH--HHHHHHHh
Q 044155          210 ECIKDSPADRPSMVDVAK--KLRQIYRS  235 (239)
Q Consensus       210 ~cl~~dp~~Rps~~ell~--~L~~l~~~  235 (239)
                      +||..||++|||++|+++  ++.++.++
T Consensus       290 ~~l~~dP~~Rpta~e~l~~~~~~~~~~~  317 (328)
T cd08226         290 LCLQQDPEKRPSASSLLSHAFFKQVKEQ  317 (328)
T ss_pred             HHccCCcccCCCHHHHhhCHHHHHHHHh
Confidence            999999999999999985  56665554

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=2.5e-35  Score=234.75  Aligned_cols=200  Identities=21%  Similarity=0.314  Sum_probs=156.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++.+.+..++..+++|||+++++|.+.+.....   ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        56 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH---~~~iiH~dik  129 (285)
T cd05632          56 KVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGN---PGFEEERALFYAAEILCGLEDLH---RENTVYRDLK  129 (285)
T ss_pred             HcCCcCceeEEEEEecCCEEEEEEEeccCccHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCC
Confidence            47899999999999999999999999999999988865432   46899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++........  .....|+..|+|||.+.+..++.++|+||||+++|++++|..||......
T Consensus       130 p~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~  207 (285)
T cd05632         130 PENILLDDYGHIRISDLGLAVKIPEGES--IRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEK  207 (285)
T ss_pred             HHHEEECCCCCEEEecCCcceecCCCCc--ccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHH
Confidence            9999999999999999998865432211  12346889999999998888999999999999999999999998643210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-----MVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~ell~  227 (239)
                      ...                  +.......... .......+..+.+++..||+.||.+||+     +.+++.
T Consensus       208 ~~~------------------~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05632         208 VKR------------------EEVDRRVLETE-EVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKR  260 (285)
T ss_pred             HHH------------------HHHHHhhhccc-cccCccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHc
Confidence            000                  00001000000 0011234566789999999999999999     667665

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=1.2e-35  Score=237.92  Aligned_cols=197  Identities=17%  Similarity=0.273  Sum_probs=155.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..++..++|+||+++++|.+++..      ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        74 ~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~------~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dl~  144 (297)
T cd06659          74 DYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ------TRLNEEQIATVCESVLQALCYLH---SQGVIHRDIK  144 (297)
T ss_pred             hCCCCchhhhhhheeeCCeEEEEEecCCCCCHHHHHhh------cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            37899999999999999999999999999999987754      45788999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++....... .......++..|+|||++.+..++.++|+||||+++++|++|..||......
T Consensus       145 p~Nill~~~~~~kL~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~  223 (297)
T cd06659         145 SDSILLTLDGRVKLSDFGFCAQISKDV-PKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPV  223 (297)
T ss_pred             HHHeEEccCCcEEEeechhHhhccccc-ccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            999999999999999999886543221 1223455788999999998888999999999999999999999988532211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...        ..          .....  ..........+..+.+++.+||..+|.+|||++++++
T Consensus       224 ~~~--------~~----------~~~~~--~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~  270 (297)
T cd06659         224 QAM--------KR----------LRDSP--PPKLKNAHKISPVLRDFLERMLTREPQERATAQELLD  270 (297)
T ss_pred             HHH--------HH----------HhccC--CCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence            000        00          00000  0000001133456889999999999999999999988

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=2.7e-35  Score=232.24  Aligned_cols=197  Identities=21%  Similarity=0.272  Sum_probs=152.0

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++.+.  ...++++||+++++|.+++...     ..++......++.|++.||+|||   +.+++|+|
T Consensus        60 ~l~h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~qi~~~l~~LH---~~~i~H~~  131 (266)
T cd06651          60 NLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAY-----GALTESVTRKYTRQILEGMSYLH---SNMIVHRD  131 (266)
T ss_pred             HcCCCCeeeEEEEEEcCCCCEEEEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCC
Confidence            47899999999988753  4678999999999999999765     45788899999999999999999   99999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCC--cceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||+||+++.++.++|+|||++.......  ........++..|+|||.+.+..++.++|+||||+++|++++|..||..
T Consensus       132 l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~  211 (266)
T cd06651         132 IKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAE  211 (266)
T ss_pred             CCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccc
Confidence            99999999999999999999986543211  1112234578889999999888899999999999999999999999853


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                     ...............+...++.+.+++ +||..+|++|||++|+++
T Consensus       212 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         212 YEAM---------------------AAIFKIATQPTNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             cchH---------------------HHHHHHhcCCCCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence            2110                     000111111111111223456677887 788899999999999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=2.3e-35  Score=234.75  Aligned_cols=218  Identities=20%  Similarity=0.217  Sum_probs=156.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++||||+++++|..++...     ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        56 ~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~ql~~~l~~LH---~~~i~H~dl~  127 (286)
T cd07847          56 QLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKNP-----RGVPEHLIKKIIWQTLQAVNFCH---KHNCIHRDVK  127 (286)
T ss_pred             hCCCCCEeeeeeEEeeCCEEEEEEeccCccHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCC
Confidence            478999999999999999999999999988887766543     46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++........ ......++..|+|||.+.+ ..++.++|+||||+++|+|++|..||.....
T Consensus       128 p~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~  206 (286)
T cd07847         128 PENILITKQGQIKLCDFGFARILTGPGD-DYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSD  206 (286)
T ss_pred             hhhEEEcCCCcEEECccccceecCCCcc-cccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCCh
Confidence            9999999999999999999876543221 1223456788999999876 4578899999999999999999999865432


Q ss_pred             cccccc------cchhhhhhhhhccchhhhhhhhhhcCCCc--HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVC------PFSEYLKNCFEDNRFTEIVDHIVVEDVSS--IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......      .........+....+..............  ......+..+.+++.+||..+|++|||+.|++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         207 VDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             HHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence            211100      00000000000000000000000000000  011234577899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-35  Score=240.79  Aligned_cols=202  Identities=18%  Similarity=0.204  Sum_probs=152.1

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++|+||+++++++.+++..++||||+++++|.+++....    ..++...+..++.|++.||+|||   +++++||||||
T Consensus        58 ~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp  130 (331)
T cd05597          58 GDRRWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFE----DRLPEDMARFYLAEMVLAIDSVH---QLGYVHRDIKP  130 (331)
T ss_pred             CCCCCCCceEEEEecCCeEEEEEecCCCCcHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEECCCCH
Confidence            689999999999999999999999999999999997532    46889999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-----CCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-----GVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      +||+++.++.++|+|||++...............|++.|+|||++..     ..++.++||||||+++|+|++|..||..
T Consensus       131 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~  210 (331)
T cd05597         131 DNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYA  210 (331)
T ss_pred             HHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCC
Confidence            99999999999999999986554332222234568999999999863     3467899999999999999999999853


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCC--CCCCHHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPA--DRPSMVDVAKK  228 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~--~Rps~~ell~~  228 (239)
                      ....        +....         ........... ......+..+.+++.+|+..++.  .|++++++++.
T Consensus       211 ~~~~--------~~~~~---------i~~~~~~~~~~-~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         211 ESLV--------ETYGK---------IMNHKEHFQFP-PDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             CCHH--------HHHHH---------HHcCCCcccCC-CccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            2110        00000         00000000000 01113456788999998865444  37899888763

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=6.1e-36  Score=237.98  Aligned_cols=215  Identities=15%  Similarity=0.163  Sum_probs=154.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++|+||++ ++|.+++....    ..+++..++.++.|++.||.|||   +.+++|+|||
T Consensus        55 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dl~  126 (284)
T cd07839          55 ELKHKNIVRLYDVLHSDKKLTLVFEYCD-QDLKKYFDSCN----GDIDPEIVKSFMFQLLKGLAFCH---SHNVLHRDLK  126 (284)
T ss_pred             hcCCCCeeeHHHHhccCCceEEEEecCC-CCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCC
Confidence            4789999999999999999999999997 68888876543    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++....... .......++..|+|||.+.+. .++.++||||||+++|+|++|..|+....+
T Consensus       127 ~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~  205 (284)
T cd07839         127 PQNLLINKNGELKLADFGLARAFGIPV-RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND  205 (284)
T ss_pred             HHHEEEcCCCcEEECccchhhccCCCC-CCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence            999999999999999999987543221 112234567889999988764 478999999999999999999988643222


Q ss_pred             cccccccchhhhhhhh--hccchhhhhh---hhhhcCCC-----cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCF--EDNRFTEIVD---HIVVEDVS-----SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .....   ........  ....+.....   ........     .......+..+.+++.+||..||.+|||+++++.
T Consensus       206 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         206 VDDQL---KRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             HHHHH---HHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence            11100   00000000  0000000000   00000000     0011134567889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=3e-35  Score=239.63  Aligned_cols=194  Identities=24%  Similarity=0.325  Sum_probs=163.3

Q ss_pred             CC-CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MS-HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~-H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      |. |||||.+++.|++....++|||++.||.|.+.+...      .+++..+..++.|++.++.|||   ..|++|||+|
T Consensus        92 l~~hpniv~l~~~~e~~~~~~lvmEL~~GGeLfd~i~~~------~~sE~da~~~~~~il~av~~lH---~~gvvHrDlK  162 (382)
T KOG0032|consen   92 LSGHPNIVQLKDAFEDPDSVYLVMELCEGGELFDRIVKK------HYSERDAAGIIRQILEAVKYLH---SLGVVHRDLK  162 (382)
T ss_pred             ccCCCCEEEEEEEEEcCCeEEEEEEecCCchHHHHHHHc------cCCHHHHHHHHHHHHHHHHHHH---hCCceeccCC
Confidence            55 999999999999999999999999999999999764      2889999999999999999999   9999999999


Q ss_pred             CcceeecCC----CceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEE----NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~----~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+|+|+...    +.++++|||++.....  ........||+.|+|||++....++..+||||+|+++|.|++|..||..
T Consensus       163 pEN~L~~~~~~~~~~ik~~DFGla~~~~~--~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~  240 (382)
T KOG0032|consen  163 PENLLLASKDEGSGRIKLIDFGLAKFIKP--GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWG  240 (382)
T ss_pred             HHHeeeccccCCCCcEEEeeCCCceEccC--CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcC
Confidence            999998754    3699999999988755  3446677899999999999999999999999999999999999999865


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcC--CCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED--VSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .......                     ..+....  +....-+..+...+++|..|+..||.+|+|+.++++
T Consensus       241 ~~~~~~~---------------------~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~  292 (382)
T KOG0032|consen  241 ETEFEIF---------------------LAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQ  292 (382)
T ss_pred             CChhHHH---------------------HHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhc
Confidence            4421111                     1111111  122222466788999999999999999999999987

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=3e-35  Score=232.14  Aligned_cols=193  Identities=20%  Similarity=0.257  Sum_probs=155.0

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++.+...+..++||||+++++|.+++...     ..+++..+..++.|++.||.|||   +.+++|+||||+
T Consensus        67 ~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~  138 (267)
T PHA03390         67 DNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLKKE-----GKLSEAEVKKIIRQLVEALNDLH---KHNIIHNDIKLE  138 (267)
T ss_pred             cCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHH
Confidence            6999999999999999999999999999999999765     46889999999999999999999   899999999999


Q ss_pred             ceeecCCC-ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           83 CILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        83 nil~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      ||+++.++ .++|+|||.+......     ....++..|+|||++.+..++.++|+||||+++|+|++|..||.......
T Consensus       139 nil~~~~~~~~~l~dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~  213 (267)
T PHA03390        139 NVLYDRAKDRIYLCDYGLCKIIGTP-----SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEE  213 (267)
T ss_pred             HEEEeCCCCeEEEecCccceecCCC-----ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcch
Confidence            99999998 9999999988655322     13457889999999998889999999999999999999999986322111


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-HHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-MVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-~~ell~  227 (239)
                       .               ......... ....  ......+..+.+++.+||+.+|.+||+ ++++++
T Consensus       214 -~---------------~~~~~~~~~-~~~~--~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        214 -L---------------DLESLLKRQ-QKKL--PFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             -h---------------hHHHHHHhh-cccC--CcccccCHHHHHHHHHHhccChhhCCchHHHHhc
Confidence             0               000000000 1110  111245677899999999999999996 588874

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.7e-35  Score=233.11  Aligned_cols=196  Identities=23%  Similarity=0.306  Sum_probs=157.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++.++...++|+||+++++|.+++..      ..++...+..++.|++.|+.|||   +.+++|+||+
T Consensus        55 ~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~------~~~~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~  125 (274)
T cd06609          55 QCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKP------GKLDETYIAFILREVLLGLEYLH---EEGKIHRDIK  125 (274)
T ss_pred             HcCCCCeeeeeEEEEECCeEEEEEEeeCCCcHHHHHhh------cCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence            36899999999999999999999999999999999875      36789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||++++++.++|+|||.+....... .......++..|+|||.+.+..++.++|+||||+++|++++|..||......
T Consensus       126 p~ni~i~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~  204 (274)
T cd06609         126 AANILLSEEGDVKLADFGVSGQLTSTM-SKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPM  204 (274)
T ss_pred             HHHEEECCCCCEEEcccccceeecccc-cccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchH
Confidence            999999999999999999987664321 2233445778899999999888999999999999999999999998532210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           ...................+..+.+++.+||..+|.+|||+++++.
T Consensus       205 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         205 ---------------------RVLFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             ---------------------HHHHHhhhcCCCCCcccccCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence                                 0000000011111111114567889999999999999999999976

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=1.4e-35  Score=241.08  Aligned_cols=199  Identities=18%  Similarity=0.187  Sum_probs=153.5

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++|+||+++++.+.+....++||||+++|+|.+++.+..    ..+++..++.++.|++.||.|||   +.+++||||||
T Consensus        58 ~~~~~i~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~----~~l~~~~~~~~~~qi~~al~~lH---~~~iiHrDlkp  130 (332)
T cd05623          58 GDNQWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFE----DRLPEDMARFYLAEMVIAIDSVH---QLHYVHRDIKP  130 (332)
T ss_pred             CCCCCEeeEEEEEecCCEEEEEEeccCCCcHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCH
Confidence            689999999999999999999999999999999997642    46888999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-----CCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-----GVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      +||+++.++.++|+|||++...............|++.|+|||++..     ..++.++|+||||+++|+|++|+.||..
T Consensus       131 ~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~  210 (332)
T cd05623         131 DNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYA  210 (332)
T ss_pred             HHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCC
Confidence            99999999999999999986543332222334568999999999863     4578899999999999999999999853


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCC---CcHHHHHHHHHHHHHHhhhcCCCCCC--CCCHHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV---SSIEKEQQLHASAQVTFECIKDSPAD--RPSMVDVAKK  228 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~ell~~  228 (239)
                      ...                     .+....+.....   .+......+..+.+++.+|+..++.+  |++++++++.
T Consensus       211 ~~~---------------------~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         211 ESL---------------------VETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             CCH---------------------HHHHHHHhCCCccccCCCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            221                     011111111000   01111234677889999988665444  6889988764

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=1.6e-35  Score=239.75  Aligned_cols=188  Identities=22%  Similarity=0.317  Sum_probs=151.1

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +|++|+++++++.+.+..++||||+++++|.+++...     ..+++..+..++.|++.||.|||   +++++||||||+
T Consensus        59 ~~~~i~~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~-----~~l~~~~~~~i~~qi~~al~~lH---~~~ivHrDikp~  130 (323)
T cd05615          59 KPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQV-----GKFKEPQAVFYAAEISVGLFFLH---RRGIIYRDLKLD  130 (323)
T ss_pred             CCCchhheeeEEecCCEEEEEEcCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHH
Confidence            5688889999999999999999999999999998765     56889999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      ||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++|+||||+++|+|++|..||.....   
T Consensus       131 Nill~~~~~ikL~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~---  206 (323)
T cd05615         131 NVMLDSEGHIKIADFGMCKEHMVDG-VTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDE---  206 (323)
T ss_pred             HeEECCCCCEEEeccccccccCCCC-ccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCH---
Confidence            9999999999999999986532211 122345589999999999988899999999999999999999999864321   


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                                        ......+......  .+...+..+.+++.+||+.+|.+|++.
T Consensus       207 ------------------~~~~~~i~~~~~~--~p~~~~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         207 ------------------DELFQSIMEHNVS--YPKSLSKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             ------------------HHHHHHHHhCCCC--CCccCCHHHHHHHHHHcccCHhhCCCC
Confidence                              1111111111111  112345678899999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=3.2e-35  Score=234.07  Aligned_cols=201  Identities=20%  Similarity=0.285  Sum_probs=155.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+...+..++||||+++++|..++.....  ...+++..+..++.|++.||.|||.  ..+++|+|||
T Consensus        55 ~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~  130 (286)
T cd06622          55 KAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVA--TEGIPEDVLRRITYAVVKGLKFLKE--EHNIIHRDVK  130 (286)
T ss_pred             hcCCCcHHhhhhheecCCeEEEEEeecCCCCHHHHHHhccc--cCCCCHHHHHHHHHHHHHHHHHHHh--cCCEeeCCCC
Confidence            47899999999999999999999999999999888876321  1468899999999999999999993  3599999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC------cccccchhhhhhHHHHHhcCCCCc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV------FNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+||+++.++.++|+|||.+.......   .....++..|+|||.+.+..      ++.++|+||||+++|++++|..||
T Consensus       131 p~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf  207 (286)
T cd06622         131 PTNVLVNGNGQVKLCDFGVSGNLVASL---AKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPY  207 (286)
T ss_pred             HHHEEECCCCCEEEeecCCcccccCCc---cccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCC
Confidence            999999999999999999986543221   22345778899999986543      478999999999999999999998


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .....                  ................ ..+...+..+.+++.+||..+|.+||++++++.
T Consensus       208 ~~~~~------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  261 (286)
T cd06622         208 PPETY------------------ANIFAQLSAIVDGDPP-TLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLE  261 (286)
T ss_pred             CCcch------------------hhHHHHHHHHhhcCCC-CCCcccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence            53210                  0000111111111111 112246677899999999999999999999987

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=2.9e-35  Score=232.10  Aligned_cols=201  Identities=20%  Similarity=0.346  Sum_probs=157.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++.+++..++|+||+++++|.+++...     ..+++.....++.|++.||.|||   +++++|+||+
T Consensus        59 ~l~h~~iv~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~ql~~al~~LH---~~~i~H~~i~  130 (268)
T cd06630          59 RLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSKY-----GAFKEAVIINYTEQLLRGLSYLH---ENQIIHRDVK  130 (268)
T ss_pred             HcCCCceehhhceeccCCeEEEEEeccCCCcHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            478999999999999999999999999999999999764     56788999999999999999999   9999999999


Q ss_pred             CcceeecCCC-ceeEcccccccccCCCCc---ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEEN-VAKLFDFSLSISIPEGET---HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~-~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+||+++.++ .++|+|||.+........   .......++..|+|||.+.+..++.++|+||+|++++++++|..||..
T Consensus       131 ~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~  210 (268)
T cd06630         131 GANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNA  210 (268)
T ss_pred             HHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCC
Confidence            9999998775 589999999866533211   112234578899999999888889999999999999999999988752


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                  ..................+...+..+.+++.+||..+|.+|||+.+++.
T Consensus       211 ~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         211 EKHS------------------NHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             CCCc------------------chHHHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence            2110                  0001111111111111222356678899999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=2.9e-35  Score=232.68  Aligned_cols=202  Identities=16%  Similarity=0.279  Sum_probs=156.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+||+
T Consensus        64 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~  135 (272)
T cd06629          64 DLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTY-----GRFEEQLVRFFTEQVLEGLAYLH---SKGILHRDLK  135 (272)
T ss_pred             hcCCCCcceEEEEeccCCceEEEEecCCCCcHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHh---hCCeeecCCC
Confidence            468999999999999999999999999999999999765     46888999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCC--cccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGV--FNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~--~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++.++++|||++........ .......++..|+|||.+....  ++.++|+||||++++++++|..||...
T Consensus       136 ~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  215 (272)
T cd06629         136 ADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDE  215 (272)
T ss_pred             hhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCc
Confidence            9999999999999999999865432211 1123445788999999987654  789999999999999999999987432


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......           +      +..................+..+.+++.+||..+|.+|||++++++
T Consensus       216 ~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (272)
T cd06629         216 EAIAAM-----------F------KLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELLQ  268 (272)
T ss_pred             chHHHH-----------H------HhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHHhh
Confidence            211000           0      0000000000000111134577899999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=2.6e-35  Score=240.48  Aligned_cols=208  Identities=22%  Similarity=0.378  Sum_probs=155.5

Q ss_pred             CCcccceeeEEEEeC-CCceEEEEEccCCChhhhhhcCCCCC--------------------------------------
Q 044155            3 SHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQPH--------------------------------------   43 (239)
Q Consensus         3 ~H~niv~l~~~~~~~-~~~~iv~e~~~~~sL~~~l~~~~~~~--------------------------------------   43 (239)
                      +||||+++++++... ...+++|||+++|+|.+++.......                                      
T Consensus        69 ~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (343)
T cd05103          69 HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSA  148 (343)
T ss_pred             CCccHhhhcceeecCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccc
Confidence            689999999988654 46789999999999999987532100                                      


Q ss_pred             ------------------------CCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEccccc
Q 044155           44 ------------------------FEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL   99 (239)
Q Consensus        44 ------------------------~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~   99 (239)
                                              ...+++.....++.|++.||+|||   +++++|+||||+||+++.++.++|+|||+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~dfg~  225 (343)
T cd05103         149 SSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGL  225 (343)
T ss_pred             cccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCccCeEEEcCCCcEEEEeccc
Confidence                                    023577788899999999999999   89999999999999999999999999999


Q ss_pred             ccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccccccccccchhhhhhhhhc
Q 044155          100 SISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKDVHDLVCPFSEYLKNCFED  177 (239)
Q Consensus       100 ~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  177 (239)
                      +........ .......+++.|+|||.+.+..++.++||||||+++|++++ |..||.......       .. .     
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~-------~~-~-----  292 (343)
T cd05103         226 ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-------EF-C-----  292 (343)
T ss_pred             ccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccH-------HH-H-----
Confidence            865422211 11222335677999999988889999999999999999997 777774321100       00 0     


Q ss_pred             cchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          178 NRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                          ..    .........+...++.+.+++..||..||.+|||+.++++.|+.+..
T Consensus       293 ----~~----~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         293 ----RR----LKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             ----HH----HhccCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                00    00000000011234568899999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=2.3e-35  Score=232.01  Aligned_cols=198  Identities=23%  Similarity=0.320  Sum_probs=158.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++...++++||+++++|.+++.+.     ..++...+..++.|++.||.|||   +.+++|+||+
T Consensus        49 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~~i~~~l~~lH---~~~~~h~dl~  120 (262)
T cd05572          49 ECNHPFIVKLYRTFKDKKYIYMLMEYCLGGELWTILRDR-----GLFDEYTARFYIACVVLAFEYLH---NRGIIYRDLK  120 (262)
T ss_pred             hCCCCCEeeeeeeEEcCCccEEEEecCCCCcHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCC
Confidence            478999999999999999999999999999999999765     45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+.......  ......++..|+|||.+....++.++|+||||+++|++++|..||......
T Consensus       121 ~~nilv~~~~~~~l~df~~~~~~~~~~--~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  198 (262)
T cd05572         121 PENLLLDSNGYVKLVDFGFAKKLKSGQ--KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDED  198 (262)
T ss_pred             HHHEEEcCCCCEEEeeCCcccccCccc--ccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCC
Confidence            999999999999999999987654332  122345788899999998888899999999999999999999998643310


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-----MVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~ell~  227 (239)
                                         ..+..............+...+..+.+++.+||..+|.+|||     ++|+++
T Consensus       199 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         199 -------------------PMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             -------------------HHHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhc
Confidence                               011111111111111111233678999999999999999999     777776

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=2.5e-35  Score=259.08  Aligned_cols=211  Identities=18%  Similarity=0.236  Sum_probs=159.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC------CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP------HFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++.+++..++||||++|++|.+++......      .....+......++.|++.||+|||   +.++
T Consensus        58 ~L~HPNIVkl~~v~~d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLH---s~GI  134 (932)
T PRK13184         58 DLIHPGIVPVYSICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVH---SKGV  134 (932)
T ss_pred             hCCCcCcCeEEEEEeeCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHH---HCCc
Confidence            478999999999999999999999999999999988753210      0123556778899999999999999   8999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCC-----------------cceeecccccccccCccccccCCcccccch
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-----------------THITDTVMGTLGYCAPEYMRTGVFNEKSNV  137 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~-----------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  137 (239)
                      +||||||+||+++.++.++|+|||++.......                 ........||+.|+|||++.+..++.++||
T Consensus       135 IHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDI  214 (932)
T PRK13184        135 LHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDI  214 (932)
T ss_pred             cccCCchheEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHH
Confidence            999999999999999999999999987551110                 001123468999999999998899999999


Q ss_pred             hhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCC
Q 044155          138 FSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPA  217 (239)
Q Consensus       138 ~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~  217 (239)
                      ||||+++|+|++|..||.........           . .        ...............++.+.+++.+||+.||+
T Consensus       215 WSLGVILyELLTG~~PF~~~~~~ki~-----------~-~--------~~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~  274 (932)
T PRK13184        215 YALGVILYQMLTLSFPYRRKKGRKIS-----------Y-R--------DVILSPIEVAPYREIPPFLSQIAMKALAVDPA  274 (932)
T ss_pred             HHHHHHHHHHHHCCCCCCCcchhhhh-----------h-h--------hhccChhhccccccCCHHHHHHHHHHccCChh
Confidence            99999999999999998542110000           0 0        00000000000124456788999999999999


Q ss_pred             CCC-CHHHHHHHHHHHHH
Q 044155          218 DRP-SMVDVAKKLRQIYR  234 (239)
Q Consensus       218 ~Rp-s~~ell~~L~~l~~  234 (239)
                      +|| +++++.+.|+....
T Consensus       275 kR~ss~eeLl~~Le~~lq  292 (932)
T PRK13184        275 ERYSSVQELKQDLEPHLQ  292 (932)
T ss_pred             hCcCHHHHHHHHHHHHHh
Confidence            997 57778888877655

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=7.4e-36  Score=245.22  Aligned_cols=197  Identities=15%  Similarity=0.237  Sum_probs=151.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+.+....++||||+++|+|.+++...     ..++...+..++.|++.||.|||   +.+++|||||
T Consensus        57 ~l~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-----~~l~~~~~~~~~~qi~~~L~~lH---~~givHrDLk  128 (360)
T cd05627          57 EADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKK-----DTLSEEATQFYIAETVLAIDAIH---QLGFIHRDIK  128 (360)
T ss_pred             hCCCCCEeeEEEEEEcCCEEEEEEeCCCCccHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCC
Confidence            468999999999999999999999999999999999765     56889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc----------------------------------ceeecccccccccCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET----------------------------------HITDTVMGTLGYCAPEYM  126 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~----------------------------------~~~~~~~~~~~y~aPE~~  126 (239)
                      |+||+++.++.++|+|||++........                                  .......||+.|+|||++
T Consensus       129 p~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~  208 (360)
T cd05627         129 PDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVF  208 (360)
T ss_pred             HHHEEECCCCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHH
Confidence            9999999999999999998764321100                                  001134689999999999


Q ss_pred             ccCCcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcC--CCcHHHHHHHHHH
Q 044155          127 RTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED--VSSIEKEQQLHAS  204 (239)
Q Consensus       127 ~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  204 (239)
                      .+..++.++|+|||||++|+|++|..||......                     .....+....  ...+.....+...
T Consensus       209 ~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~---------------------~~~~~i~~~~~~~~~p~~~~~s~~~  267 (360)
T cd05627         209 MQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQ---------------------ETYRKVMNWKETLVFPPEVPISEKA  267 (360)
T ss_pred             cCCCCCCcceeccccceeeecccCCCCCCCCCHH---------------------HHHHHHHcCCCceecCCCCCCCHHH
Confidence            9889999999999999999999999998543211                     0111111000  0000001234567


Q ss_pred             HHHHhhhcCCCCCCCCC---HHHHHH
Q 044155          205 AQVTFECIKDSPADRPS---MVDVAK  227 (239)
Q Consensus       205 ~~li~~cl~~dp~~Rps---~~ell~  227 (239)
                      +++|.+|+. ||.+|++   ++++++
T Consensus       268 ~~li~~l~~-~p~~R~~~~~~~ei~~  292 (360)
T cd05627         268 KDLILRFCT-DSENRIGSNGVEEIKS  292 (360)
T ss_pred             HHHHHHhcc-ChhhcCCCCCHHHHhc
Confidence            889988774 9999995   556554

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=2.8e-35  Score=233.81  Aligned_cols=195  Identities=19%  Similarity=0.252  Sum_probs=154.7

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .+||||+.+++++...+..++||||+++++|.+++...     ..+++..+..++.|++.||.|||   +.+++|+||||
T Consensus        54 ~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~-----~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dikp  125 (279)
T cd05633          54 GDCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLSQH-----GVFSEKEMRFYATEIILGLEHMH---NRFVVYRDLKP  125 (279)
T ss_pred             CCCCcEeEEEEEEecCCeEEEEEecCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcCCCCCCH
Confidence            37999999999999989999999999999999988765     56899999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      +||+++.++.++++|||++.......   .....++..|+|||.+.. ..++.++|+||+|+++|++++|..||......
T Consensus       126 ~Nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~  202 (279)
T cd05633         126 ANILLDEHGHVRISDLGLACDFSKKK---PHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK  202 (279)
T ss_pred             HHEEECCCCCEEEccCCcceeccccC---ccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCc
Confidence            99999999999999999986543221   123458899999998864 55889999999999999999999998643211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                      ...                  ........  .....+...+..+.+++.+||..||++||     |+.++++
T Consensus       203 ~~~------------------~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~  254 (279)
T cd05633         203 DKH------------------EIDRMTLT--VNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKE  254 (279)
T ss_pred             CHH------------------HHHHHhhc--CCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHh
Confidence            000                  00000000  01111224567889999999999999999     5888877

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=5.1e-35  Score=230.02  Aligned_cols=201  Identities=22%  Similarity=0.309  Sum_probs=161.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~i~H~dl   79 (239)
                      +++|+||+++++++...+..++|+||+++++|.+++...     ..++...+..++.|++.|++|||   + .+++|+||
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~~l~~~l~~lh---~~~~~~H~~l  126 (264)
T cd06623          55 SCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKKV-----GKIPEPVLAYIARQILKGLDYLH---TKRHIIHRDI  126 (264)
T ss_pred             hcCCCCeeeEEEEEccCCeEEEEEEecCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHh---ccCCCccCCC
Confidence            368999999999999999999999999999999999865     56889999999999999999999   8 99999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      +|+||+++.++.++|+|||.+........ ......++..|+|||.+....++.++|+||||+++|++++|..||.....
T Consensus       127 ~~~ni~~~~~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~  205 (264)
T cd06623         127 KPSNLLINSKGEVKIADFGISKVLENTLD-QCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQ  205 (264)
T ss_pred             CHHHEEECCCCCEEEccCccceecccCCC-cccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccc
Confidence            99999999999999999998876533221 12234578889999999888899999999999999999999999865432


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                                        ....+..................+..+.+++.+||+.+|++|||+.++++.
T Consensus       206 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         206 ------------------PSFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             ------------------cCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence                              011111111111111111111156789999999999999999999999973

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=2.2e-35  Score=234.63  Aligned_cols=197  Identities=21%  Similarity=0.288  Sum_probs=151.7

Q ss_pred             CCcccceeeEEEEe------CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            3 SHNHILKLIGCCLE------TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         3 ~H~niv~l~~~~~~------~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +|+||+++++++..      ....+++|||+.+++|.+++.....   ..+++..+..++.|++.|+.|||   +.+++|
T Consensus        71 ~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~qi~~al~~LH---~~~ivH  144 (282)
T cd06636          71 HHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKG---NALKEDWIAYICREILRGLAHLH---AHKVIH  144 (282)
T ss_pred             CCCcEEEEeeehhcccccCCCCEEEEEEEeCCCCcHHHHHHHccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCccc
Confidence            69999999999863      3467899999999999999976543   45788889999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc-----cCCcccccchhhhhhHHHHHhcCC
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      +|++|+||+++.++.++|+|||++........ ......++..|+|||.+.     ...++.++|+||||+++|+|++|.
T Consensus       145 ~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~  223 (282)
T cd06636         145 RDIKGQNVLLTENAEVKLVDFGVSAQLDRTVG-RRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGA  223 (282)
T ss_pred             CCCCHHHEEECCCCCEEEeeCcchhhhhcccc-CCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCC
Confidence            99999999999999999999998765432211 123455788999999876     345778999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .||..........                     ...............+..+.++|.+||..||.+|||+.|+++
T Consensus       224 ~p~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         224 PPLCDMHPMRALF---------------------LIPRNPPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             CCccccCHHhhhh---------------------hHhhCCCCCCcccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            9985432111000                     000000111111245567999999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=2.4e-35  Score=237.00  Aligned_cols=201  Identities=19%  Similarity=0.216  Sum_probs=155.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+..+...++||||+++++|.+++...     ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        57 ~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~  128 (305)
T cd05609          57 FAENPFVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNI-----GALPVDMARMYFAETVLALEYLH---NYGIVHRDLK  128 (305)
T ss_pred             hCCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCc
Confidence            368999999999999999999999999999999999765     46888999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc--------------ceeecccccccccCccccccCCcccccchhhhhhHHHH
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET--------------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFE  146 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~--------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~  146 (239)
                      |+||+++.++.++++|||+++.......              .......++..|+|||.+....++.++|+||||+++|+
T Consensus       129 p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~e  208 (305)
T cd05609         129 PDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYE  208 (305)
T ss_pred             hHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHH
Confidence            9999999999999999998763211000              01112346788999999988889999999999999999


Q ss_pred             HhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCC-cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 044155          147 LLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS-SIEKEQQLHASAQVTFECIKDSPADRPSMVDV  225 (239)
Q Consensus       147 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~dp~~Rps~~el  225 (239)
                      +++|..||....                     ..+........... +......+..+.+++.+||+.||.+|||+.++
T Consensus       209 l~~g~~pf~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~  267 (305)
T cd05609         209 FLVGCVPFFGDT---------------------PEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPLERLGTGGA  267 (305)
T ss_pred             HHhCCCCCCCCC---------------------HHHHHHHHHhcccCCCCccccCCHHHHHHHHHHhccChhhccCccCH
Confidence            999998874321                     01111111111110 01111355678999999999999999996555


Q ss_pred             HHHHH
Q 044155          226 AKKLR  230 (239)
Q Consensus       226 l~~L~  230 (239)
                      .+.|+
T Consensus       268 ~~ll~  272 (305)
T cd05609         268 FEVKQ  272 (305)
T ss_pred             HHHHh
Confidence            55444

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=3.3e-35  Score=233.82  Aligned_cols=217  Identities=18%  Similarity=0.254  Sum_probs=156.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..+...++|+||+ +++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        55 ~~~~~~i~~~~~~~~~~~~~~~v~e~~-~~~L~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~  126 (286)
T cd07832          55 ACQHPYVVKLLDVFPHGSGFVLVMEYM-PSDLSEVLRDEE----RPLPEAQVKSYMRMLLKGVAYMH---ANGIMHRDLK  126 (286)
T ss_pred             hCCCCCCcceeeEEecCCeeEEEeccc-CCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcC
Confidence            468999999999999999999999999 899999987643    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+...............++..|+|||.+.+. .++.++||||+|++++++++|..+|....+
T Consensus       127 p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~  206 (286)
T cd07832         127 PANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGEND  206 (286)
T ss_pred             HHHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCH
Confidence            9999999999999999999876543321122344578899999988654 468899999999999999999777754332


Q ss_pred             cccccccchhhhhhhhhccchhhhh-----hhhhh-cCCCc---HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIV-----DHIVV-EDVSS---IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ........... ..+. ...+++..     ..... .....   ......+..+.+++.+||..+|.+|||++++++
T Consensus       207 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~  281 (286)
T cd07832         207 IEQLAIVFRTL-GTPN-EETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALR  281 (286)
T ss_pred             HHHHHHHHHHc-CCCC-hHHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            11110000000 0000 00000000     00000 00000   001133578899999999999999999999975

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.9e-35  Score=231.72  Aligned_cols=200  Identities=24%  Similarity=0.321  Sum_probs=164.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++.||.+..+|+.|+.....|++||||+||+|..+.+++.+   +.+++..++-++..++.||.|||   ..|||.||||
T Consensus       133 ~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~---~~fse~~aRFYaAEvl~ALEYLH---mlGivYRDLK  206 (459)
T KOG0610|consen  133 LLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPG---KRFSESAARFYAAEVLLALEYLH---MLGIVYRDLK  206 (459)
T ss_pred             hcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCC---CccchhhHHHHHHHHHHHHHHHH---hhceeeccCC
Confidence            37899999999999999999999999999999999988766   78999999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCC---------------------------------C-C-------------------
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPE---------------------------------G-E-------------------  107 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~---------------------------------~-~-------------------  107 (239)
                      |+|||+.++|.+-|+||.++.....                                 . .                   
T Consensus       207 PENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~ae  286 (459)
T KOG0610|consen  207 PENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAE  286 (459)
T ss_pred             cceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcC
Confidence            9999999999999999987542110                                 0 0                   


Q ss_pred             --cceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhh
Q 044155          108 --THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVD  185 (239)
Q Consensus       108 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (239)
                        ......+.||-.|.|||++.+...+.++|-|+|||++|||+.|..||.+..                     ..+...
T Consensus       287 p~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~---------------------~~~Tl~  345 (459)
T KOG0610|consen  287 PTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSN---------------------NKETLR  345 (459)
T ss_pred             CCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCC---------------------chhhHH
Confidence              011234678999999999999999999999999999999999988885322                     223333


Q ss_pred             hhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC----HHHHHH
Q 044155          186 HIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS----MVDVAK  227 (239)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps----~~ell~  227 (239)
                      .++..+...+.....+...++||++.|.+||++|.-    |.||-+
T Consensus       346 NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~  391 (459)
T KOG0610|consen  346 NIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKR  391 (459)
T ss_pred             HHhcCCCcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhc
Confidence            444444433333366678899999999999999997    666643

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-35  Score=245.51  Aligned_cols=197  Identities=19%  Similarity=0.281  Sum_probs=162.2

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ..||+||++++.|+..+.+||..|||.||....++-.-+    ..+++.++..+++|++.||.|||   +++|+|||||.
T Consensus        86 CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDaimlEL~----r~LtE~QIqvvc~q~ldALn~LH---s~~iIHRDLKA  158 (1187)
T KOG0579|consen   86 CDHPVIVKLLSAYYFENKLWILIEFCGGGAVDAIMLELG----RVLTEDQIQVVCYQVLDALNWLH---SQNIIHRDLKA  158 (1187)
T ss_pred             CCChHHHHHHHHHhccCceEEEEeecCCchHhHHHHHhc----cccchHHHHHHHHHHHHHHHHHh---hcchhhhhccc
Confidence            369999999999999999999999999999977776643    57899999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc-----cCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      .|||+.-+|.++|+|||.+... .........+.|||.|||||+..     ..+|+.++||||||+++.||.-+.+|-..
T Consensus       159 GNiL~TldGdirLADFGVSAKn-~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhe  237 (1187)
T KOG0579|consen  159 GNILLTLDGDIRLADFGVSAKN-KSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHE  237 (1187)
T ss_pred             cceEEEecCcEeeecccccccc-hhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccc
Confidence            9999999999999999987543 22233456889999999999874     35689999999999999999999777322


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhh-cCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVV-EDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                     .+.++-.+.+ .+.....+..++..+.+|+..||..||..||++.++++
T Consensus       238 ln---------------------pMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  238 LN---------------------PMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             cc---------------------hHHHHHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence            11                     1222222222 22333445688899999999999999999999999986

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-35  Score=231.46  Aligned_cols=194  Identities=22%  Similarity=0.190  Sum_probs=154.8

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++|+||+++++++..++..++|+||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+||+|
T Consensus        54 ~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~lH---~~~i~H~dl~p  125 (260)
T cd05611          54 GESPYVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKTL-----GGLPEDWAKQYIAEVVLGVEDLH---QRGIIHRDIKP  125 (260)
T ss_pred             CCCCCeeeeeeeEEcCCeEEEEEeccCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCH
Confidence            58999999999999999999999999999999999765     46889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.++|+|||++.....     .....++..|+|||.+.+..++.++|+||||+++|++++|..||...... 
T Consensus       126 ~nil~~~~~~~~l~dfg~~~~~~~-----~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-  199 (260)
T cd05611         126 ENLLIDQTGHLKLTDFGLSRNGLE-----NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPD-  199 (260)
T ss_pred             HHeEECCCCcEEEeecccceeccc-----cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHH-
Confidence            999999999999999998765422     22345778899999998877899999999999999999999998532210 


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcC--CCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVED--VSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                                          ..........  .........+..+.+++.+||+.+|.+|||+.++.+.|
T Consensus       200 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l  249 (260)
T cd05611         200 --------------------AVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIK  249 (260)
T ss_pred             --------------------HHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHH
Confidence                                0000000000  01111123567789999999999999999876555443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-35  Score=234.61  Aligned_cols=224  Identities=22%  Similarity=0.320  Sum_probs=176.3

Q ss_pred             CCCcccceeeEEEEeCC----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhC------CC
Q 044155            2 MSHNHILKLIGCCLETP----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFG------FP   71 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~------~~   71 (239)
                      ++|+||++++++-..+.    .+|+|++|.+.|||.++++.      ..++|....+++..++.||+|||+.      +.
T Consensus       261 m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~dyL~~------ntisw~~~cria~SmarGLa~LHee~p~~d~~K  334 (534)
T KOG3653|consen  261 MKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLCDYLKA------NTISWNSLCRIAESMARGLAHLHEELPRGDHHK  334 (534)
T ss_pred             ccchhHHHhhchhccCCccccceeEEeeeccCCcHHHHHHh------ccccHHHHHHHHHHHHHHHHHhcccCCcCCCCC
Confidence            68999999999876555    78999999999999999987      4689999999999999999999942      35


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCC-cc-----cccchhhhhhHH
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGV-FN-----EKSNVFSFSVFL  144 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~-~~-----~~~Di~slG~~l  144 (239)
                      .+|+|||||+.|||+.+|+.+.|+|||++..+..... .....-.||.+|||||++.+.. +.     .+.||||+|.++
T Consensus       335 p~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVL  414 (534)
T KOG3653|consen  335 PPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVL  414 (534)
T ss_pred             CccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999988754432 2233467999999999998753 32     358999999999


Q ss_pred             HHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHH-----HHHHHHHHHHhhhcCCCCCCC
Q 044155          145 FELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKE-----QQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       145 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~cl~~dp~~R  219 (239)
                      ||++++....+. ....++..||...+.....-+...+.+   +.+..++..++     .....+.+.+..||..||+.|
T Consensus       415 WEi~SRC~~~~~-~~vp~Yqlpfe~evG~hPt~e~mq~~V---V~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeAR  490 (534)
T KOG3653|consen  415 WEIASRCTDADP-GPVPEYQLPFEAEVGNHPTLEEMQELV---VRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEAR  490 (534)
T ss_pred             HHHHhhcccccC-CCCCcccCchhHHhcCCCCHHHHHHHH---HhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhh
Confidence            999999877665 556666667665555444333333333   22222222222     345678899999999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 044155          220 PSMVDVAKKLRQIYRS  235 (239)
Q Consensus       220 ps~~ell~~L~~l~~~  235 (239)
                      .||.-+.+++.++...
T Consensus       491 LTA~Cv~eR~~~l~~~  506 (534)
T KOG3653|consen  491 LTAGCVEERMAELMML  506 (534)
T ss_pred             hhhHHHHHHHHHHhcc
Confidence            9999999999998654

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.4e-35  Score=231.64  Aligned_cols=199  Identities=23%  Similarity=0.292  Sum_probs=152.6

Q ss_pred             CCcccceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            3 SHNHILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +|+||+++++++....      ..++||||+++++|.+++..... ....++...+..++.|++.||.|||   +.+++|
T Consensus        61 ~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H  136 (275)
T cd06608          61 NHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRK-KGKRLKEEWIAYILRETLRGLAYLH---ENKVIH  136 (275)
T ss_pred             CCCChheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHHh---cCCccc
Confidence            6999999999997654      37899999999999998875321 0156889999999999999999999   999999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-----CCcccccchhhhhhHHHHHhcCC
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-----GVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      +||+|+||+++.++.++|+|||.+....... .......++..|+|||++..     ..++.++||||||+++|++++|.
T Consensus       137 ~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~  215 (275)
T cd06608         137 RDIKGQNILLTKNAEVKLVDFGVSAQLDSTL-GRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGK  215 (275)
T ss_pred             CCCCHHHEEEccCCeEEECCCccceecccch-hhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCC
Confidence            9999999999999999999999876543222 22234457889999998754     23678899999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCC-CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .||.........                     ........ ........+..+.+++.+||..||++|||+.++++
T Consensus       216 ~p~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         216 PPLCDMHPMRAL---------------------FKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             CCccccchHHHH---------------------HHhhccCCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            998532211000                     00000000 11112245678899999999999999999999975

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=5.8e-35  Score=230.08  Aligned_cols=205  Identities=21%  Similarity=0.325  Sum_probs=158.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++.+......++++|++++++|.+++......  ..+++.....++.|++.||++||   +.+++|+||+
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ql~~al~~lh---~~~i~h~~l~  129 (267)
T cd06610          55 QCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPR--GGLDEAIIATVLKEVLKGLEYLH---SNGQIHRDIK  129 (267)
T ss_pred             hcCCCCEEEEEEEEeeCCEEEEEEeccCCCcHHHHHHHhccc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            378999999999999999999999999999999999764221  45789999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc---eeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH---ITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+||++++++.++|+|||++.........   ......++..|+|||++... .++.++|+||||+++++|++|..||..
T Consensus       130 p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~  209 (267)
T cd06610         130 AGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSK  209 (267)
T ss_pred             HHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccc
Confidence            99999999999999999998765433221   22344578899999998776 688999999999999999999999854


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .......        ........      .....   .......+..+.+++.+||..||.+|||+.++++
T Consensus       210 ~~~~~~~--------~~~~~~~~------~~~~~---~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         210 YPPMKVL--------MLTLQNDP------PSLET---GADYKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             cChhhhH--------HHHhcCCC------CCcCC---ccccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            3221100        00000000      00000   0001245577899999999999999999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=5.7e-35  Score=228.84  Aligned_cols=197  Identities=24%  Similarity=0.319  Sum_probs=156.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+..++..++||||+++++|.+++.....   ..++...+..++.+++.|+.|||   +++++|+||+
T Consensus        55 ~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~  128 (256)
T cd08220          55 LLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCN---SLLDEDTILHFFVQILLALHHVH---TKLILHRDLK  128 (256)
T ss_pred             hCCCCchhheeeeEecCCEEEEEEecCCCCCHHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            46899999999999988999999999999999999976532   45789999999999999999999   9999999999


Q ss_pred             CcceeecCCC-ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++ .++++|||.+.......  ......++..|+|||.+.+...+.++|+||||+++|++++|..||.....
T Consensus       129 ~~nil~~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~  206 (256)
T cd08220         129 TQNILLDKHKMVVKIGDFGISKILSSKS--KAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANL  206 (256)
T ss_pred             HHHEEEcCCCCEEEEccCCCceecCCCc--cccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCch
Confidence            9999998654 57999999987653322  12234578899999999888889999999999999999999888753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           ............. ......+..+.+++.+||..+|.+|||++|+++
T Consensus       207 ---------------------~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         207 ---------------------PALVLKIMSGTFA-PISDRYSPDLRQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             ---------------------HHHHHHHHhcCCC-CCCCCcCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence                                 0111111111111 111234567899999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=8.1e-35  Score=229.32  Aligned_cols=197  Identities=19%  Similarity=0.241  Sum_probs=152.6

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++.+.  ...+++|||+++++|.+++.+.     ..++......++.|++.||.|||   +.+++|+|
T Consensus        60 ~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~d  131 (265)
T cd06652          60 NLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSY-----GALTENVTRKYTRQILEGVSYLH---SNMIVHRD  131 (265)
T ss_pred             hcCCCCeeeEEeEeccCCCceEEEEEEecCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCC
Confidence            47899999999988764  4567899999999999999765     45788889999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||+||+++.++.++|+|||.+........  .......++..|+|||.+.+..++.++|+||||+++|++++|+.||..
T Consensus       132 l~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~  211 (265)
T cd06652         132 IKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAE  211 (265)
T ss_pred             CCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCc
Confidence            999999999999999999998865432111  112234578899999999888899999999999999999999999853


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                     ...............+...+..+.+++.+||. +|++|||++++++
T Consensus       212 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         212 FEAM---------------------AAIFKIATQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             cchH---------------------HHHHHHhcCCCCCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence            2110                     00011111111111223455678899999995 9999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=5.6e-35  Score=232.24  Aligned_cols=199  Identities=23%  Similarity=0.290  Sum_probs=153.1

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC-Ceeecccc
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR-PIVFRNFK   80 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~-~i~H~dlk   80 (239)
                      ++||||+++++++...+..+++|||++ ++|.+++....... ..+++..+..++.|++.||+|||   ++ +++|+|||
T Consensus        57 ~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~~i~h~dlk  131 (283)
T cd06617          57 VDCPYTVTFYGALFREGDVWICMEVMD-TSLDKFYKKVYDKG-LTIPEDILGKIAVSIVKALEYLH---SKLSVIHRDVK  131 (283)
T ss_pred             cCCCCeeeeeEEEecCCcEEEEhhhhc-ccHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCC
Confidence            579999999999999999999999997 79988886532211 56899999999999999999999   76 99999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc----CCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT----GVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~----~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+||+++.++.+||+|||.+.......  ......++..|+|||.+.+    ..++.++|+||||+++|+|++|..||..
T Consensus       132 p~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  209 (283)
T cd06617         132 PSNVLINRNGQVKLCDFGISGYLVDSV--AKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDS  209 (283)
T ss_pred             HHHEEECCCCCEEEeeccccccccccc--ccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCc
Confidence            999999999999999999986543221  1223457888999998865    3468899999999999999999998753


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .....                    +..................+..+.++|.+||..+|.+|||++++++
T Consensus       210 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         210 WKTPF--------------------QQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             cccCH--------------------HHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            21100                    0001111111111111234577899999999999999999999986

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=4.3e-35  Score=233.92  Aligned_cols=192  Identities=21%  Similarity=0.307  Sum_probs=156.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++.||||+++++++.+++..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+||+
T Consensus        57 ~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-----~~l~~~~~~~~~~qil~~l~~lH---~~~i~H~dl~  128 (290)
T cd05580          57 SIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKS-----GRFPEPVARFYAAQVVLALEYLH---SLDIVYRDLK  128 (290)
T ss_pred             hCCCCCccceeeEEEcCCeEEEEEecCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCC
Confidence            468999999999999999999999999999999999775     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++......    .....+++.|+|||.+.+...+.++|+||||+++|+|++|..||..... 
T Consensus       129 p~nili~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-  203 (290)
T cd05580         129 PENLLLDSDGYIKITDFGFAKRVKGR----TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNP-  203 (290)
T ss_pred             HHHEEECCCCCEEEeeCCCccccCCC----CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH-
Confidence            99999999999999999998765333    2344578899999999888888999999999999999999988753220 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                          ............  ..+...+..+.+++.+||..||.+|+     +++|+++
T Consensus       204 --------------------~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~  253 (290)
T cd05580         204 --------------------IQIYEKILEGKV--RFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKN  253 (290)
T ss_pred             --------------------HHHHHHHhcCCc--cCCccCCHHHHHHHHHHccCCHHHccCcccCCHHHHHc
Confidence                                011111111111  11123356788999999999999999     7777764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=6.1e-35  Score=247.27  Aligned_cols=212  Identities=13%  Similarity=0.181  Sum_probs=149.9

Q ss_pred             CCcccceeeEEEEeC-CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CCeeecccc
Q 044155            3 SHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RPIVFRNFK   80 (239)
Q Consensus         3 ~H~niv~l~~~~~~~-~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~i~H~dlk   80 (239)
                      .|.+|+++++++... ...++|||++ +++|.+++...     ..+++..+..++.||+.||.|||   . .+|+|||||
T Consensus       189 ~~~~i~~i~~~~~~~~~~~~iv~~~~-g~~l~~~l~~~-----~~l~~~~~~~i~~qi~~aL~yLH---~~~gIiHrDlK  259 (467)
T PTZ00284        189 DRFPLMKIQRYFQNETGHMCIVMPKY-GPCLLDWIMKH-----GPFSHRHLAQIIFQTGVALDYFH---TELHLMHTDLK  259 (467)
T ss_pred             cCcceeeeEEEEEcCCceEEEEEecc-CCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---hcCCeecCCCC
Confidence            466789999998765 4678999988 58998988765     56889999999999999999999   6 599999999


Q ss_pred             CcceeecCCC----------------ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHH
Q 044155           81 TSCILFNEEN----------------VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFL  144 (239)
Q Consensus        81 ~~nil~~~~~----------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l  144 (239)
                      |+|||++.++                .+||+|||.+.....    ......||+.|+|||++.+..++.++|||||||++
T Consensus       260 P~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~----~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil  335 (467)
T PTZ00284        260 PENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERH----SRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCII  335 (467)
T ss_pred             HHHEEEecCCcccccccccccCCCCceEEECCCCccccCcc----ccccccCCccccCcHHhhcCCCCcHHHHHHHHHHH
Confidence            9999998765                489999998753221    12355789999999999999999999999999999


Q ss_pred             HHHhcCCCCcccccccccc------cccchhhhhhhhhccchhhhhhhh-----------hhc--CCCcHHHHHHHHHHH
Q 044155          145 FELLTGWDVSDLVKDVHDL------VCPFSEYLKNCFEDNRFTEIVDHI-----------VVE--DVSSIEKEQQLHASA  205 (239)
Q Consensus       145 ~~~~~g~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~~~~~~  205 (239)
                      |||++|+.||.........      ...+...+..........+.....           +..  .............+.
T Consensus       336 ~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (467)
T PTZ00284        336 YELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLC  415 (467)
T ss_pred             HHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHH
Confidence            9999999999754432111      011111110000000000000000           000  000000111245678


Q ss_pred             HHHhhhcCCCCCCCCCHHHHHH
Q 044155          206 QVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       206 ~li~~cl~~dp~~Rps~~ell~  227 (239)
                      +||..||.+||.+|||++|+++
T Consensus       416 dli~~mL~~dP~~R~ta~e~L~  437 (467)
T PTZ00284        416 DLIYGLLHYDRQKRLNARQMTT  437 (467)
T ss_pred             HHHHHhCCcChhhCCCHHHHhc
Confidence            9999999999999999999987

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=1e-34  Score=231.80  Aligned_cols=199  Identities=22%  Similarity=0.244  Sum_probs=150.6

Q ss_pred             CCcccceeeEEEEeC-----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeec
Q 044155            3 SHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFR   77 (239)
Q Consensus         3 ~H~niv~l~~~~~~~-----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~   77 (239)
                      +||||+++++++...     ...++|+||+++++|.++++..... ...+++..+..++.|++.||.|||   +.+++|+
T Consensus        77 ~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~  152 (291)
T cd06639          77 NHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLIC-GQRLDEAMISYILYGALLGLQHLH---NNRIIHR  152 (291)
T ss_pred             CCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecc
Confidence            799999999998754     3578999999999999988642111 156889999999999999999999   8999999


Q ss_pred             cccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-----CcccccchhhhhhHHHHHhcCCC
Q 044155           78 NFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-----VFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        78 dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      ||||+||+++.++.++|+|||.+........ ......++..|+|||.+...     .++.++|+||||+++|+|++|+.
T Consensus       153 dlkp~nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~  231 (291)
T cd06639         153 DVKGNNILLTTEGGVKLVDFGVSAQLTSTRL-RRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDP  231 (291)
T ss_pred             CCCHHHEEEcCCCCEEEeecccchhcccccc-cccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCC
Confidence            9999999999999999999999876532221 12234578889999987543     26789999999999999999999


Q ss_pred             CcccccccccccccchhhhhhhhhccchhhhhhhhhhcC-CCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED-VSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ||.........                     ....... .........+..+.++|.+||..+|.+|||+.++++
T Consensus       232 p~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~  286 (291)
T cd06639         232 PLFDMHPVKTL---------------------FKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLE  286 (291)
T ss_pred             CCCCCcHHHHH---------------------HHHhcCCCCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            88543211000                     0000000 000011234456899999999999999999999986

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=6.6e-35  Score=232.30  Aligned_cols=196  Identities=16%  Similarity=0.252  Sum_probs=154.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..++..++++||+++++|.+++..      .+++...+..++.|++.||++||   +.+++|+||+
T Consensus        72 ~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~------~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~dl~  142 (285)
T cd06648          72 DYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTH------TRMNEEQIATVCLAVLKALSFLH---AQGVIHRDIK  142 (285)
T ss_pred             HcCCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            36899999999999999999999999999999998875      34778899999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+....... .......+++.|+|||.+.+..++.++|+||||+++|++++|..||..... 
T Consensus       143 p~Nil~~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~-  220 (285)
T cd06648         143 SDSILLTSDGRVKLSDFGFCAQVSKEV-PRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPP-  220 (285)
T ss_pred             hhhEEEcCCCcEEEcccccchhhccCC-cccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCH-
Confidence            999999999999999999876543221 112234578899999999888899999999999999999999988743110 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCC-CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          ............ ........+..+.+++.+||..+|.+|||+.++++
T Consensus       221 --------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         221 --------------------LQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             --------------------HHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence                                000000000000 00001124567899999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=2.4e-35  Score=236.17  Aligned_cols=216  Identities=19%  Similarity=0.174  Sum_probs=155.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++.+.+..++||||+ +++|.+++....    ..+++..+..++.|++.||.|||   +++++|+|||
T Consensus        58 ~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~i~~~~----~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~  129 (298)
T cd07841          58 ELKHPNIIGLLDVFGHKSNINLVFEFM-ETDLEKVIKDKS----IVLTPADIKSYMLMTLRGLEYLH---SNWILHRDLK  129 (298)
T ss_pred             hcCCCCChhhhheeecCCEEEEEEccc-CCCHHHHHhccC----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCC
Confidence            478999999999999988999999999 799999997642    26889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++....... .......+++.|+|||.+.+ ..++.++|+||||+++++|++|..+|....+
T Consensus       130 p~nill~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~  208 (298)
T cd07841         130 PNNLLIASDGVLKLADFGLARSFGSPN-RKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSD  208 (298)
T ss_pred             hhhEEEcCCCCEEEccceeeeeccCCC-ccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCcc
Confidence            999999999999999999987653322 11223345778999998855 4578899999999999999999777654332


Q ss_pred             cccccccchhhhhhhhhccchh------hhhhhhhhcCCC-cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFT------EIVDHIVVEDVS-SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .......+... ..+. ...+.      ............ .......+..+.++|.+||+.||.+|||+.|+++
T Consensus       209 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~  281 (298)
T cd07841         209 IDQLGKIFEAL-GTPT-EENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALE  281 (298)
T ss_pred             HHHHHHHHHHc-CCCc-hhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence            21111000000 0000 00000      000000000000 0011234577899999999999999999999987

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=3.1e-35  Score=238.92  Aligned_cols=198  Identities=18%  Similarity=0.200  Sum_probs=152.3

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++|+||+++++++.+.+..++||||+++|+|.+++....    ..+++..+..++.|++.||.|||   +++++||||||
T Consensus        58 ~~~~~i~~l~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~----~~l~~~~~~~~~~qi~~~L~~lH---~~~iiHrDlkp  130 (331)
T cd05624          58 GDCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFE----DRLPEDMARFYIAEMVLAIHSIH---QLHYVHRDIKP  130 (331)
T ss_pred             CCCCCEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCch
Confidence            589999999999999999999999999999999997642    46788999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-----CCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-----GVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      +||+++.++.++|+|||++...............|++.|+|||++.+     ..++.++|+||||+++|+|++|+.||..
T Consensus       131 ~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~  210 (331)
T cd05624         131 DNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYA  210 (331)
T ss_pred             HHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccC
Confidence            99999999999999999987654332222334568999999999875     4578899999999999999999999853


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcC--C-CcHHHHHHHHHHHHHHhhhcCCCCCC--CCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED--V-SSIEKEQQLHASAQVTFECIKDSPAD--RPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~ell~  227 (239)
                      ....                     +....+....  . .+......+..+.+++.+|+..++.+  |+++++++.
T Consensus       211 ~~~~---------------------~~~~~i~~~~~~~~~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~  265 (331)
T cd05624         211 ESLV---------------------ETYGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKK  265 (331)
T ss_pred             CCHH---------------------HHHHHHHcCCCcccCCCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhc
Confidence            2210                     0011111000  0 00011134567889999999865544  457887765

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=1.1e-34  Score=233.44  Aligned_cols=193  Identities=25%  Similarity=0.365  Sum_probs=152.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++|+||++ |++.+.+....    ..+++..+..++.|++.||.|||   +.+++|+||+
T Consensus        71 ~l~h~niv~~~~~~~~~~~~~lv~e~~~-g~l~~~~~~~~----~~l~~~~~~~~~~ql~~~L~~LH---~~~i~H~dl~  142 (307)
T cd06607          71 QLRHPNTIEYKGCYLREHTAWLVMEYCL-GSASDILEVHK----KPLQEVEIAAICHGALQGLAYLH---SHERIHRDIK  142 (307)
T ss_pred             hCCCCCEEEEEEEEEeCCeEEEEHHhhC-CCHHHHHHHcc----cCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCC
Confidence            3789999999999999999999999997 78877776432    45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc---cCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR---TGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++......     ....+++.|+|||++.   ...++.++||||||+++|++++|..||...
T Consensus       143 p~nIl~~~~~~~kL~dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~  217 (307)
T cd06607         143 AGNILLTEPGTVKLADFGSASLVSPA-----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (307)
T ss_pred             cccEEECCCCCEEEeecCcceecCCC-----CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCc
Confidence            99999999999999999988654322     2345778899999874   345788999999999999999999887432


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                     ..................+..+.+++.+||..+|.+|||+.+++.
T Consensus       218 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  266 (307)
T cd06607         218 NAMS---------------------ALYHIAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLK  266 (307)
T ss_pred             cHHH---------------------HHHHHhcCCCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            2110                     000000001111112245667899999999999999999999986

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=8.4e-35  Score=231.63  Aligned_cols=201  Identities=21%  Similarity=0.268  Sum_probs=150.7

Q ss_pred             CCcccceeeEEEE-----eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeec
Q 044155            3 SHNHILKLIGCCL-----ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFR   77 (239)
Q Consensus         3 ~H~niv~l~~~~~-----~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~   77 (239)
                      +||||+++++++.     .++..++||||+++++|.+++...... ...++...+..++.|++.||.|||   +.+++|+
T Consensus        73 ~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~  148 (286)
T cd06638          73 DHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKR-GERMEEPIIAYILHEALMGLQHLH---VNKTIHR  148 (286)
T ss_pred             cCCCeeeeeeeeeecccCCCCeEEEEEeecCCCCHHHHHHHhhcc-CccccHHHHHHHHHHHHHHHHHHH---hCCcccc
Confidence            6999999999885     345679999999999999987643211 146788899999999999999999   8999999


Q ss_pred             cccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-----CCcccccchhhhhhHHHHHhcCCC
Q 044155           78 NFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-----GVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        78 dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      ||||+||+++.++.++|+|||++........ ......+++.|+|||++..     ..++.++|+||||+++|+|++|..
T Consensus       149 dlkp~nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~  227 (286)
T cd06638         149 DVKGNNILLTTEGGVKLVDFGVSAQLTSTRL-RRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDP  227 (286)
T ss_pred             CCCHHhEEECCCCCEEEccCCceeecccCCC-ccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCC
Confidence            9999999999999999999999876533221 1223458899999998753     347889999999999999999999


Q ss_pred             CcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      |+..........       .  .....           ......+...+..+.+++.+||..||.+|||+.|+++.
T Consensus       228 p~~~~~~~~~~~-------~--~~~~~-----------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         228 PLADLHPMRALF-------K--IPRNP-----------PPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             CCCCCchhHHHh-------h--ccccC-----------CCcccCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence            875432111000       0  00000           00000011234568899999999999999999999874

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=5e-35  Score=233.81  Aligned_cols=216  Identities=19%  Similarity=0.223  Sum_probs=154.9

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++...  ...++|+||++ ++|.+++....    ..++......++.|++.||+|||   +.+++|+|
T Consensus        60 ~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~d  131 (293)
T cd07843          60 KLQHPNIVTVKEVVVGSNLDKIYMVMEYVE-HDLKSLMETMK----QPFLQSEVKCLMLQLLSGVAHLH---DNWILHRD  131 (293)
T ss_pred             hcCCCCEEEEEEEEEecCCCcEEEEehhcC-cCHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecc
Confidence            47899999999999877  78999999997 69999887643    35889999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |||+||+++.++.++|+|||.+........ ......+++.|+|||.+.+. .++.++|+||||+++|+|++|..||...
T Consensus       132 l~p~nili~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~  210 (293)
T cd07843         132 LKTSNLLLNNRGILKICDFGLAREYGSPLK-PYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGK  210 (293)
T ss_pred             CCHHHEEECCCCcEEEeecCceeeccCCcc-ccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999998876543221 12234467889999988754 4688999999999999999999998754


Q ss_pred             cccccccccchhhhhhhhhccchhhhhh--hh----h----hcCCCcHHHHH-HHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVD--HI----V----VEDVSSIEKEQ-QLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~----~~~~~~~~~~~-~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                      ............ ...+. ...+.....  ..    .    ........+.. .++.+.++|.+||+.||++|||+.|++
T Consensus       211 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell  288 (293)
T cd07843         211 SEIDQLNKIFKL-LGTPT-EKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDAL  288 (293)
T ss_pred             ChHHHHHHHHHH-hCCCc-hHHHHHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHh
Confidence            322111100000 00000 000000000  00    0    00000001111 366788999999999999999999998


Q ss_pred             H
Q 044155          227 K  227 (239)
Q Consensus       227 ~  227 (239)
                      +
T Consensus       289 ~  289 (293)
T cd07843         289 K  289 (293)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=7.2e-35  Score=228.44  Aligned_cols=196  Identities=20%  Similarity=0.287  Sum_probs=156.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++......++++||+++++|.+++...     ..+++.....++.|++.||+|||   +.+++|+||+
T Consensus        58 ~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~  129 (258)
T cd06632          58 KLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKY-----GSFPEPVIRLYTRQILLGLEYLH---DRNTVHRDIK  129 (258)
T ss_pred             hcCCCCchheeeeEecCCeEEEEEEecCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            368999999999999999999999999999999999765     45788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||.+.......  ......++..|+|||.+.... ++.++|+||||+++|++++|..||.....
T Consensus       130 ~~ni~~~~~~~~kl~d~~~~~~~~~~~--~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~  207 (258)
T cd06632         130 GANILVDTNGVVKLADFGMAKQVVEFS--FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEG  207 (258)
T ss_pred             HHHEEECCCCCEEEccCccceeccccc--cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcH
Confidence            999999999999999999876543222  223455788899999987666 88999999999999999999999864321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                     .............+...+..+.+++.+||..+|.+|||+.+++.
T Consensus       208 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         208 VAA---------------------VFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             HHH---------------------HHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence            000                     00000000001111234567889999999999999999999875

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.5e-35  Score=240.56  Aligned_cols=211  Identities=18%  Similarity=0.219  Sum_probs=149.6

Q ss_pred             CCCCcccceeeEEEEeC------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++...      ...+++++++ +++|.+++..      ..++...+..++.|++.||.|||   +.++
T Consensus        70 ~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~------~~l~~~~~~~i~~qi~~aL~~LH---~~~i  139 (343)
T cd07878          70 HMKHENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLNNIVKC------QKLSDEHVQFLIYQLLRGLKYIH---SAGI  139 (343)
T ss_pred             hcCCCchhhhhhhhcccccccccCcEEEEeecC-CCCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCe
Confidence            47899999999987643      3468899988 5899888754      45889999999999999999999   9999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCC
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      +||||||+||+++.++.+||+|||++......    .....+++.|+|||++.+ ..++.++||||||+++|+|++|..|
T Consensus       140 vHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~p  215 (343)
T cd07878         140 IHRDLKPSNVAVNEDCELRILDFGLARQADDE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKAL  215 (343)
T ss_pred             ecccCChhhEEECCCCCEEEcCCccceecCCC----cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCC
Confidence            99999999999999999999999998765332    224467899999999876 4688999999999999999999999


Q ss_pred             ccccccccccc-------ccchhhhhhhhhccchhhhhhhhhhcCCCc---HHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          154 SDLVKDVHDLV-------CPFSEYLKNCFEDNRFTEIVDHIVVEDVSS---IEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       154 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      |..........       .+..+..... ......... ..+......   ......++.+.+++.+||..||.+|||+.
T Consensus       216 f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~  293 (343)
T cd07878         216 FPGNDYIDQLKRIMEVVGTPSPEVLKKI-SSEHARKYI-QSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISAS  293 (343)
T ss_pred             CCCCCHHHHHHHHHHHhCCCCHHHHHhc-chhhHHHHh-hccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHH
Confidence            86432111000       0000000000 000000000 000000000   00012234578999999999999999999


Q ss_pred             HHHH
Q 044155          224 DVAK  227 (239)
Q Consensus       224 ell~  227 (239)
                      |+++
T Consensus       294 ell~  297 (343)
T cd07878         294 EALA  297 (343)
T ss_pred             HHhc
Confidence            9985

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-34  Score=250.79  Aligned_cols=207  Identities=23%  Similarity=0.356  Sum_probs=164.5

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCC---------CCCCC--cCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAP---------QPHFE--PLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~---------~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +|+||+.++|.|...+..++|+||+..|+|.++++..+         .....  .++......++.||+.|++||+   +
T Consensus       360 ~H~niv~llG~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~---~  436 (609)
T KOG0200|consen  360 KHPNIVNLLGACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLA---S  436 (609)
T ss_pred             CCcchhhheeeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHh---h
Confidence            69999999999999999999999999999999999876         11111  2888999999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCcceeeccc--ccccccCccccccCCcccccchhhhhhHHHHHhc
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM--GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~--~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~  149 (239)
                      .+++||||..+|||+..+..+||+|||+++..............  -+..|||||.+....++.+||+||||+++||++|
T Consensus       437 ~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~Eifs  516 (609)
T KOG0200|consen  437 VPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFT  516 (609)
T ss_pred             CCccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhh
Confidence            99999999999999999999999999999865443332222222  4667999999999999999999999999999999


Q ss_pred             -CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          150 -GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       150 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                       |..||....                    ...+++. .+..-.+...+..++.++.++|..||+.+|++||++.++.+.
T Consensus       517 LG~~PYp~~~--------------------~~~~l~~-~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~  575 (609)
T KOG0200|consen  517 LGGTPYPGIP--------------------PTEELLE-FLKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEF  575 (609)
T ss_pred             CCCCCCCCCC--------------------cHHHHHH-HHhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHH
Confidence             455664311                    0112222 122222222233567889999999999999999999999999


Q ss_pred             HHHHH
Q 044155          229 LRQIY  233 (239)
Q Consensus       229 L~~l~  233 (239)
                      +...+
T Consensus       576 ~~~~l  580 (609)
T KOG0200|consen  576 FEKHL  580 (609)
T ss_pred             HHHHH
Confidence            99854

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=1.7e-34  Score=229.06  Aligned_cols=195  Identities=21%  Similarity=0.330  Sum_probs=156.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..+...++||||+++++|.+++..      ..++...+..++.|++.|+.+||   +.+++|+||+
T Consensus        58 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~------~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~  128 (277)
T cd06641          58 QCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEP------GPLDETQIATILREILKGLDYLH---SEKKIHRDIK  128 (277)
T ss_pred             hcCCCCEeEEEEEEEeCCeEEEEEEeCCCCcHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHc---cCCeecCCCC
Confidence            47899999999999999999999999999999998864      35788999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++....... .......++..|+|||.+.+..++.++|+||||+++|++++|..|+......
T Consensus       129 p~Ni~i~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~  207 (277)
T cd06641         129 AANVLLSEHGEVKLADFGVAGQLTDTQ-IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPM  207 (277)
T ss_pred             HHhEEECCCCCEEEeecccceecccch-hhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchH
Confidence            999999999999999999886553221 1223345788899999998888899999999999999999999887532210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           ...... ............+..+.+++.+||..+|.+||++.++++
T Consensus       208 ---------------------~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  252 (277)
T cd06641         208 ---------------------KVLFLI-PKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLK  252 (277)
T ss_pred             ---------------------HHHHHH-hcCCCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence                                 000000 000000111234567889999999999999999999998

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-35  Score=233.43  Aligned_cols=217  Identities=21%  Similarity=0.248  Sum_probs=156.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++..++..++++||++++.+..+....     ..++...+..++.|++.||.|||   ..+++|+||+
T Consensus        56 ~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~  127 (288)
T cd07833          56 QLRHENIVNLKEAFRRKGRLYLVFEYVERTLLELLEASP-----GGLPPDAVRSYIWQLLQAIAYCH---SHNIIHRDIK  127 (288)
T ss_pred             hcCCCCeeehhheEEECCEEEEEEecCCCCHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            468999999999999999999999999976665555433     45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+...............++..|+|||++.+. .++.++|+||||+++|++++|..||.....
T Consensus       128 ~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~  207 (288)
T cd07833         128 PENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSD  207 (288)
T ss_pred             HHHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9999999999999999999876544332223345678889999999887 788999999999999999999998864332


Q ss_pred             cccccc------cchhhhhhhhhccchhhhhhhhhhcCCCc-----HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVC------PFSEYLKNCFEDNRFTEIVDHIVVEDVSS-----IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......      .+.......+.........  ........     ..+...+..+.++|.+||..+|++|||+++++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         208 IDQLYLIQKCLGPLPPSHQELFSSNPRFAGV--AFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             HHHHHHHHHHhCCCCHHHhhhcccCcccccc--ccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence            111000      0000000000000000000  00000000     001123677899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=9.5e-35  Score=232.28  Aligned_cols=198  Identities=18%  Similarity=0.249  Sum_probs=156.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..++|+||+++++|.+++.+      ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        72 ~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~------~~l~~~~~~~i~~~l~~al~~LH---~~gi~H~dL~  142 (293)
T cd06647          72 ENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE------TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIK  142 (293)
T ss_pred             hcCCCCeeehhheeeeCCcEEEEEecCCCCcHHHHHhh------cCCCHHHHHHHHHHHHHHHHHHH---hCCEeeccCC
Confidence            36899999999999999999999999999999999865      34678889999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++........ ......+++.|+|||.+....++.++|+||||+++|++++|..||......
T Consensus       143 p~Nili~~~~~~kL~dfg~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~  221 (293)
T cd06647         143 SDNILLGMDGSVKLTDFGFCAQITPEQS-KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL  221 (293)
T ss_pred             HHHEEEcCCCCEEEccCcceeccccccc-ccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChh
Confidence            9999999999999999998765433221 223345788899999998888899999999999999999999998643221


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      .....        ...            ............+..+.+++.+||..+|.+||++++++..
T Consensus       222 ~~~~~--------~~~------------~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         222 RALYL--------IAT------------NGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             hheee--------hhc------------CCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            11100        000            0000001112345678899999999999999999999873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=1.7e-34  Score=229.93  Aligned_cols=198  Identities=19%  Similarity=0.293  Sum_probs=157.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++......++++||+++++|.+++....    ..++...+..++.|++.||.+||   ..+++|+||+
T Consensus        71 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~l~~~~~~~i~~~i~~~L~~lH---~~gi~H~dl~  143 (286)
T cd06614          71 DCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNF----VRMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIK  143 (286)
T ss_pred             HCCCCCeeEEEEEEEECCEEEEEEeccCCCcHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCC
Confidence            4789999999999999999999999999999999998752    36889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+....... .......++..|+|||.+.+..++.++|+||||+++|++++|..||......
T Consensus       144 p~ni~i~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~  222 (286)
T cd06614         144 SDNILLSKDGSVKLADFGFAAQLTKEK-SKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPL  222 (286)
T ss_pred             hhhEEEcCCCCEEECccchhhhhccch-hhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHH
Confidence            999999999999999999876543221 1122344678899999998888999999999999999999999887532210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcC-CCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVED-VSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                     ......... .........+..+.++|.+||+.+|.+|||+.++++
T Consensus       223 ~---------------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  269 (286)
T cd06614         223 R---------------------ALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQ  269 (286)
T ss_pred             H---------------------HHHHHHhcCCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence            0                     000000001 011111235677899999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-35  Score=241.24  Aligned_cols=188  Identities=25%  Similarity=0.325  Sum_probs=155.9

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++.+.+.++...|+|||.+.|+-+.+.+...      +....++..|+.+|+.++.|||   ++|++||||||+
T Consensus       374 ~h~niv~~~~v~~~~~~~~~v~e~l~g~ell~ri~~~------~~~~~e~~~w~~~lv~Av~~LH---~~gvvhRDLkp~  444 (612)
T KOG0603|consen  374 DHPNIVKSHDVYEDGKEIYLVMELLDGGELLRRIRSK------PEFCSEASQWAAELVSAVDYLH---EQGVVHRDLKPG  444 (612)
T ss_pred             CCCcceeecceecCCceeeeeehhccccHHHHHHHhc------chhHHHHHHHHHHHHHHHHHHH---hcCeeecCCChh
Confidence            7999999999999999999999999998888888764      3333777889999999999999   999999999999


Q ss_pred             ceee-cCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           83 CILF-NEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        83 nil~-~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      |||+ ++.+.++|+|||.++.....    .....-|..|.|||++....+++++|+||||+++|+|++|+.||+...+. 
T Consensus       445 NIL~~~~~g~lrltyFG~a~~~~~~----~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~-  519 (612)
T KOG0603|consen  445 NILLDGSAGHLRLTYFGFWSELERS----CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG-  519 (612)
T ss_pred             heeecCCCCcEEEEEechhhhCchh----hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch-
Confidence            9999 68889999999998776443    11334577899999999899999999999999999999999998755532 


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                         .++...+.....    ....+...++|+.+||+.||.+||++.++..
T Consensus       520 -------------------~ei~~~i~~~~~----s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~  562 (612)
T KOG0603|consen  520 -------------------IEIHTRIQMPKF----SECVSDEAKDLLQQLLQVDPALRLGADEIGA  562 (612)
T ss_pred             -------------------HHHHHhhcCCcc----ccccCHHHHHHHHHhccCChhhCcChhhhcc
Confidence                               122222221211    1467788999999999999999999999865

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=3.2e-34  Score=228.57  Aligned_cols=209  Identities=22%  Similarity=0.238  Sum_probs=154.9

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++.+.  +..++||||+++++|.+++..... ....++......++.|++.||+|||   +.+++|+|
T Consensus        55 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~l~~~~~~~i~~~i~~~L~~lH---~~~i~H~d  130 (287)
T cd06621          55 SCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKK-RGGRIGEKVLGKIAESVLKGLSYLH---SRKIIHRD  130 (287)
T ss_pred             hCCCCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCC
Confidence            47999999999998653  467899999999999988764211 1156788999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+|+||+++.++.++|+|||++.......   .....++..|+|||.+.+..++.++|+||||+++|+|++|..||....
T Consensus       131 l~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  207 (287)
T cd06621         131 IKPSNILLTRKGQVKLCDFGVSGELVNSL---AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEG  207 (287)
T ss_pred             CCHHHEEEecCCeEEEeeccccccccccc---cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCccc
Confidence            99999999999999999999976442221   123446788999999988889999999999999999999999986443


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......   .+.... .........     ...  .......++.+.+++.+||+.+|++|||+.|+++
T Consensus       208 ~~~~~~---~~~~~~-~~~~~~~~~-----~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         208 EPPLGP---IELLSY-IVNMPNPEL-----KDE--PGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             CCCCCh---HHHHHH-HhcCCchhh-----ccC--CCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence            200000   000000 000000000     000  0000134567899999999999999999999988

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=9e-35  Score=232.06  Aligned_cols=217  Identities=18%  Similarity=0.245  Sum_probs=152.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+. ++|.+++....    ..++......++.|++.||.|||   +.+++|+|||
T Consensus        59 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~----~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~dl~  130 (291)
T cd07844          59 DLKHANIVTLHDIIHTKKTLTLVFEYLD-TDLKQYMDDCG----GGLSMHNVRLFLFQLLRGLAYCH---QRRVLHRDLK  130 (291)
T ss_pred             hCCCcceeeEEEEEecCCeEEEEEecCC-CCHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCC
Confidence            4789999999999999999999999998 69999887543    45788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+........ ......++..|+|||++.+ ..++.++|+||+|+++|+|++|..||.....
T Consensus       131 p~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~  209 (291)
T cd07844         131 PQNLLISERGELKLADFGLARAKSVPSK-TYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTD  209 (291)
T ss_pred             HHHEEEcCCCCEEECccccccccCCCCc-cccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCcc
Confidence            9999999999999999998764322111 1112345788999998875 4588999999999999999999999864331


Q ss_pred             cccccccchhhhhhhhhccchhhhhhh-----hhhcCCC-cHHH---HHH--HHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDH-----IVVEDVS-SIEK---EQQ--LHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~---~~~--~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..............+ ....+......     ....... ....   ...  ...+.+++.+||+.+|.+|||+.++++
T Consensus       210 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         210 VEDQLHKIFRVLGTP-TEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             HHHHHHHHHHhcCCC-ChhhhhhhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence            111000000000000 00000000000     0000000 0000   011  256789999999999999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=2.8e-34  Score=227.14  Aligned_cols=207  Identities=23%  Similarity=0.371  Sum_probs=155.5

Q ss_pred             CCCCcccceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCC-CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC
Q 044155            1 QMSHNHILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQ-PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP   73 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~   73 (239)
                      +++||||+++++++....      ..+++++|+.+++|.+++..... .....++......++.|++.||+|||   +.+
T Consensus        57 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~  133 (273)
T cd05074          57 EFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLS---SKN  133 (273)
T ss_pred             cCCCCCcceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCC
Confidence            478999999999886532      23688999999999888754321 11135788899999999999999999   899


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CC
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GW  151 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~  151 (239)
                      ++|+||||+||+++.++.++++|||.+......... ......+++.|++||.+....++.++||||||+++|++++ |.
T Consensus       134 i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~  213 (273)
T cd05074         134 FIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQ  213 (273)
T ss_pred             EeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCC
Confidence            999999999999999999999999998765332211 1123345678999999988889999999999999999999 77


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||......                     +........... ......+..+.+++.+||..+|++|||+.++++.|++
T Consensus       214 ~p~~~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~  271 (273)
T cd05074         214 TPYAGVENS---------------------EIYNYLIKGNRL-KQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLEL  271 (273)
T ss_pred             CCCCCCCHH---------------------HHHHHHHcCCcC-CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHh
Confidence            776532210                     000000000000 0001344678999999999999999999999999987


Q ss_pred             H
Q 044155          232 I  232 (239)
Q Consensus       232 l  232 (239)
                      +
T Consensus       272 ~  272 (273)
T cd05074         272 I  272 (273)
T ss_pred             h
Confidence            6

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=1.5e-34  Score=229.35  Aligned_cols=200  Identities=21%  Similarity=0.286  Sum_probs=156.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..++||||+++++|.+++.....   ..++...+..++.|++.||.|||   ..+++|+||+
T Consensus        49 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~  122 (277)
T cd05577          49 KVSSRFIVSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGE---PGFPEARAIFYAAQIICGLEHLH---QRRIVYRDLK  122 (277)
T ss_pred             hCCCCCEeeeeeEEecCCeEEEEEecCCCCcHHHHHHHcCc---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence            47899999999999999999999999999999999876532   36889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+......  .......++..|+|||.+.+..++.++|+||||+++++|++|..||......
T Consensus       123 p~Nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  200 (277)
T cd05577         123 PENVLLDDHGNVRISDLGLAVELKGG--KKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEK  200 (277)
T ss_pred             HHHEEECCCCCEEEccCcchhhhccC--CccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCccc
Confidence            99999999999999999988654321  1222345678899999998888999999999999999999999998543210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                      ..                 .............  ..+...++.+.+++.+||+.||.+||     ++.+++.
T Consensus       201 ~~-----------------~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~  253 (277)
T cd05577         201 VE-----------------KEELKRRTLEMAV--EYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVRE  253 (277)
T ss_pred             cc-----------------HHHHHhccccccc--cCCccCCHHHHHHHHHHccCChhHccCCCcccHHHHHh
Confidence            00                 0001111110000  01123466789999999999999999     6666764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=4.6e-34  Score=230.40  Aligned_cols=223  Identities=18%  Similarity=0.246  Sum_probs=155.4

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++.+.  ...++||||++ ++|.+.+..........++...+..++.|++.||.|||   +.+++|+|
T Consensus        58 ~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~h~d  133 (316)
T cd07842          58 ELKHENVVSLVEVFLEHADKSVYLLFDYAE-HDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLH---SNWVLHRD  133 (316)
T ss_pred             hcCCCCccceEEEEeCCCCceEEEEEeCCC-cCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHH---hCCEeeCC
Confidence            47899999999999988  77899999997 67878776443222236889999999999999999999   89999999


Q ss_pred             ccCcceeecC----CCceeEcccccccccCCCCc--ceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCC
Q 044155           79 FKTSCILFNE----ENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        79 lk~~nil~~~----~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      |||+||+++.    ++.+||+|||++........  .......+++.|+|||.+.+. .++.++|+||||+++++|++|.
T Consensus       134 lkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~  213 (316)
T cd07842         134 LKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLE  213 (316)
T ss_pred             CCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcC
Confidence            9999999999    88999999999876533221  112234568889999988764 5789999999999999999999


Q ss_pred             CCcccccccccccccchh-hhhhhhh---------------ccchhhhhhhhhhcCCC-cHHHH------HHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSE-YLKNCFE---------------DNRFTEIVDHIVVEDVS-SIEKE------QQLHASAQVT  208 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~-~~~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~li  208 (239)
                      .||...........++.. .......               ...+....+........ .....      ..+..+.+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  293 (316)
T cd07842         214 PIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLL  293 (316)
T ss_pred             CCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHH
Confidence            998754332211111000 0000000               00000000000000000 00010      2345688999


Q ss_pred             hhhcCCCCCCCCCHHHHHH
Q 044155          209 FECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       209 ~~cl~~dp~~Rps~~ell~  227 (239)
                      .+||+.||++|||+.|+++
T Consensus       294 ~~~l~~~P~~Rps~~eil~  312 (316)
T cd07842         294 RKLLEYDPTKRITAEEALE  312 (316)
T ss_pred             HHHhcCCcccCcCHHHHhc
Confidence            9999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=6.7e-35  Score=257.46  Aligned_cols=202  Identities=20%  Similarity=0.299  Sum_probs=150.8

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCC----CCCe
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGF----PRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~----~~~i   74 (239)
                      +|+|||||+++++|.+.  ..+++||||+++++|.+++...... ...+++..++.++.||+.||.|||...    ..+|
T Consensus        68 ~L~HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~-~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~I  146 (1021)
T PTZ00266         68 ELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKM-FGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERV  146 (1021)
T ss_pred             HcCCCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCc
Confidence            47899999999998654  4678999999999999998753221 146899999999999999999999311    1459


Q ss_pred             eeccccCcceeecCC-----------------CceeEcccccccccCCCCcceeecccccccccCcccccc--CCccccc
Q 044155           75 VFRNFKTSCILFNEE-----------------NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT--GVFNEKS  135 (239)
Q Consensus        75 ~H~dlk~~nil~~~~-----------------~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~~~  135 (239)
                      +|+||||+|||++..                 +.+||+|||++.......  ......|++.|+|||++.+  ..++.++
T Consensus       147 VHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s--~~~s~vGTp~YmAPEvL~ge~~~~s~KS  224 (1021)
T PTZ00266        147 LHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIES--MAHSCVGTPYYWSPELLLHETKSYDDKS  224 (1021)
T ss_pred             eeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccc--cccccCCCccccCHHHHhccCCCCCchh
Confidence            999999999999642                 348999999987553221  1234468999999999864  3478999


Q ss_pred             chhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCC
Q 044155          136 NVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDS  215 (239)
Q Consensus       136 Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~d  215 (239)
                      |||||||++|+|++|..||.......                    ............ + ....+..+.+||..||..+
T Consensus       225 DVWSLG~ILYELLTGk~PF~~~~~~~--------------------qli~~lk~~p~l-p-i~~~S~eL~dLI~~~L~~d  282 (1021)
T PTZ00266        225 DMWALGCIIYELCSGKTPFHKANNFS--------------------QLISELKRGPDL-P-IKGKSKELNILIKNLLNLS  282 (1021)
T ss_pred             HHHHHHHHHHHHHHCCCCCCcCCcHH--------------------HHHHHHhcCCCC-C-cCCCCHHHHHHHHHHhcCC
Confidence            99999999999999999985322111                    111111111100 0 1133567889999999999


Q ss_pred             CCCCCCHHHHHH
Q 044155          216 PADRPSMVDVAK  227 (239)
Q Consensus       216 p~~Rps~~ell~  227 (239)
                      |.+|||+.|++.
T Consensus       283 PeeRPSa~QlL~  294 (1021)
T PTZ00266        283 AKERPSALQCLG  294 (1021)
T ss_pred             hhHCcCHHHHhc
Confidence            999999999984

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-36  Score=228.92  Aligned_cols=199  Identities=20%  Similarity=0.296  Sum_probs=164.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      |...|++|++||.+.....+|||||||.-||+.|.++..+    +++.+.++..++...++||+|||   ...-+|||||
T Consensus        84 QC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~R~----K~L~E~EIs~iL~~TLKGL~YLH---~~~KIHRDIK  156 (502)
T KOG0574|consen   84 QCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRARR----KPLSEQEISAVLRDTLKGLQYLH---DLKKIHRDIK  156 (502)
T ss_pred             HcCCchhhhhhhhhccCCceEeehhhcCCCcHHHHHHHhc----CCccHHHHHHHHHHHHhHHHHHH---HHHHHHhhcc
Confidence            3467999999999988889999999999999999998765    78999999999999999999999   8889999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      ..|||++-+|..||+|||.+-.+..-. ....+..||+.|||||++..-.|+.++||||||++..||..|++||...-.+
T Consensus       157 AGNILLNT~G~AKLADFGVAGQLTDTM-AKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPM  235 (502)
T KOG0574|consen  157 AGNILLNTDGIAKLADFGVAGQLTDTM-AKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPM  235 (502)
T ss_pred             cccEEEcccchhhhhhccccchhhhhH-HhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCccccccc
Confidence            999999999999999999986653221 2345677999999999999999999999999999999999999998643322


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......       +             ...+....-+..++.++-++|.+||..+|++|-||-++++
T Consensus       236 RAIFMI-------P-------------T~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~  282 (502)
T KOG0574|consen  236 RAIFMI-------P-------------TKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCE  282 (502)
T ss_pred             ceeEec-------c-------------CCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence            222110       0             0000011123477888999999999999999999998876

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=6.7e-35  Score=231.96  Aligned_cols=218  Identities=18%  Similarity=0.202  Sum_probs=154.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++...++||||+. ++|.+++.....   ..+++..+..++.|++.||+|||   +.+++|+||+
T Consensus        55 ~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~~~~~~---~~l~~~~~~~~~~~i~~~l~~lh---~~~i~H~~l~  127 (284)
T cd07860          55 ELNHPNIVKLLDVIHTENKLYLVFEFLH-QDLKKFMDASPL---SGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLK  127 (284)
T ss_pred             hcCCCCCcchhhhcccCCcEEEEeeccc-cCHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            4789999999999999999999999996 789888876533   56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++........ ......++..|+|||.+.+.. ++.++|+||||+++|+++||+.||.....
T Consensus       128 p~nill~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~  206 (284)
T cd07860         128 PQNLLINTEGAIKLADFGLARAFGVPVR-TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE  206 (284)
T ss_pred             HHHEEECCCCCEEEeeccchhhcccCcc-ccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH
Confidence            9999999999999999998865432211 122334678899999887644 58889999999999999999999864332


Q ss_pred             cccccccchhhhhhhh----hc-cchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCF----ED-NRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......... ....+.    .. ..................  .....+..+.++|.+||+.||++|||+++++.
T Consensus       207 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         207 IDQLFRIFR-TLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             HHHHHHHHH-HhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence            111100000 000000    00 000000000000000000  01123466789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=2.4e-34  Score=226.15  Aligned_cols=203  Identities=19%  Similarity=0.250  Sum_probs=157.7

Q ss_pred             CCCCcccceeeEEEEe--CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCC--CCCeee
Q 044155            1 QMSHNHILKLIGCCLE--TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGF--PRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~--~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--~~~i~H   76 (239)
                      +++||||+++++++..  +...+++|||+++++|.+++..... ....+++..+..++.|++.||.+||..+  +.+++|
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~-~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h  133 (265)
T cd08217          55 ELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKK-ERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLH  133 (265)
T ss_pred             hcCCCccceeeeeeecCCCCEEEEEehhccCCCHHHHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHHhcCccccCccee
Confidence            4789999999998764  3457899999999999999876421 1156889999999999999999999433  578999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      +||+|+||+++.++.++++|||++........ ......++..|+|||++....++.++|+||||+++++|++|..||..
T Consensus       134 ~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~  212 (265)
T cd08217         134 RDLKPANIFLDANNNVKLGDFGLAKILGHDSS-FAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTA  212 (265)
T ss_pred             cCCCHHHEEEecCCCEEEecccccccccCCcc-cccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccC
Confidence            99999999999999999999999876543321 12334678899999999888889999999999999999999998853


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                     ............ ...+...+..+.+++.+||..+|.+|||+.++++
T Consensus       213 ~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~  261 (265)
T cd08217         213 RNQ---------------------LQLASKIKEGKF-RRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQ  261 (265)
T ss_pred             cCH---------------------HHHHHHHhcCCC-CCCccccCHHHHHHHHHHccCCcccCCCHHHHhh
Confidence            220                     001111111111 1112245677899999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=2e-34  Score=228.79  Aligned_cols=195  Identities=19%  Similarity=0.247  Sum_probs=154.7

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ..||||+++++++.+....++||||+.+++|.+++...     ..+++..+..++.|++.|+.|||   +.+++|+||||
T Consensus        54 ~~~~~i~~~~~~~~~~~~~~~v~e~~~g~~L~~~l~~~-----~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p  125 (278)
T cd05606          54 GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH-----GVFSEAEMRFYAAEIILGLEHMH---NRFVVYRDLKP  125 (278)
T ss_pred             CCCCcEeeeeeeeecCCEEEEEEecCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCCCCH
Confidence            47999999999999999999999999999999988754     56899999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      +||+++.++.++|+|||++.......   .....|+..|+|||.+.+. .++.++||||+|+++|+|++|..||......
T Consensus       126 ~nili~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~  202 (278)
T cd05606         126 ANILLDEHGHVRISDLGLACDFSKKK---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK  202 (278)
T ss_pred             HHEEECCCCCEEEccCcCccccCccC---CcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCcc
Confidence            99999999999999999986543221   2234688999999998754 5889999999999999999999998643211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                      ...                  ...........  ..+...+..+.+++.+||..+|.+||     ++.++++
T Consensus       203 ~~~------------------~~~~~~~~~~~--~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~  254 (278)
T cd05606         203 DKH------------------EIDRMTLTMAV--ELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  254 (278)
T ss_pred             chH------------------HHHHHhhccCC--CCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHh
Confidence            100                  00000000000  01112356789999999999999999     9999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=2.5e-34  Score=229.91  Aligned_cols=204  Identities=14%  Similarity=0.121  Sum_probs=151.6

Q ss_pred             CCCcccceeeEEEEeCC----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeec
Q 044155            2 MSHNHILKLIGCCLETP----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFR   77 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~   77 (239)
                      +.|+||+++++.+....    ..+++++++. .++.+.+...     ...++..+..++.|++.||+|||   +.+++||
T Consensus        80 ~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH---~~~iiHr  150 (294)
T PHA02882         80 IDHLGIPKYYGCGSFKRCRMYYRFILLEKLV-ENTKEIFKRI-----KCKNKKLIKNIMKDMLTTLEYIH---EHGISHG  150 (294)
T ss_pred             CCCCCCCcEEEeeeEecCCceEEEEEEehhc-cCHHHHHHhh-----ccCCHHHHHHHHHHHHHHHHHHH---hCCeecC
Confidence            57999999998766543    2367788875 6777777543     33567888899999999999999   8999999


Q ss_pred             cccCcceeecCCCceeEcccccccccCCCCc------ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCC
Q 044155           78 NFKTSCILFNEENVAKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        78 dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      ||||+|||++.++.++|+|||+++.......      .......||+.|+|||++.+..++.++||||||+++++|++|.
T Consensus       151 DiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~  230 (294)
T PHA02882        151 DIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIK  230 (294)
T ss_pred             CCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999876532211      1122346899999999999889999999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      .||...........       .     ...+..........   .....++.+.+++..||+.+|.+||+++++.+.+
T Consensus       231 ~P~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        231 LPWKGFGHNGNLIH-------A-----AKCDFIKRLHEGKI---KIKNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             CCCCccccchHHHH-------H-----hHHHHHHHhhhhhh---ccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            99975532111100       0     00011111111111   1123457789999999999999999999998865

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-35  Score=244.52  Aligned_cols=201  Identities=25%  Similarity=0.426  Sum_probs=163.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||++++||+..+ ....+|||+++.|||.+.++....   ..+.......++.||+.|+.||.   .+++|||||.
T Consensus       167 ~L~H~hliRLyGvVl~-qp~mMV~ELaplGSLldrLrka~~---~~llv~~Lcdya~QiA~aM~YLe---skrlvHRDLA  239 (1039)
T KOG0199|consen  167 KLQHPHLIRLYGVVLD-QPAMMVFELAPLGSLLDRLRKAKK---AILLVSRLCDYAMQIAKAMQYLE---SKRLVHRDLA  239 (1039)
T ss_pred             hccCcceeEEeeeecc-chhhHHhhhcccchHHHHHhhccc---cceeHHHHHHHHHHHHHHHHHHh---hhhhhhhhhh
Confidence            5899999999999987 667899999999999999998433   67888999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCccccccCCcccccchhhhhhHHHHHhcCC-CCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW-DVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~-~p~~~~  157 (239)
                      .+|+++.....+||+|||+.+.+..+...  .......++.|+|||.+....++.++|+|++||++|||+|+. .||-+.
T Consensus       240 ARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~  319 (1039)
T KOG0199|consen  240 ARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGC  319 (1039)
T ss_pred             hhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCC
Confidence            99999999999999999999888655433  234556788999999999999999999999999999999953 455332


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      .                     -..+...+. ......-+..+++++.+++..||..+|.+|||+..+.+.+-
T Consensus       320 ~---------------------g~qIL~~iD-~~erLpRPk~csedIY~imk~cWah~paDRptFsair~~~~  370 (1039)
T KOG0199|consen  320 R---------------------GIQILKNID-AGERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDLV  370 (1039)
T ss_pred             C---------------------HHHHHHhcc-ccccCCCCCCChHHHHHHHHHhccCCccccccHHHHHHhHH
Confidence            2                     111111111 11112223467889999999999999999999999986543

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=7.2e-35  Score=226.12  Aligned_cols=183  Identities=21%  Similarity=0.221  Sum_probs=147.2

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ..||||+++++++.+....++||||+++++|.+++...     ..+++.....++.|++.||.|||   +.+++|+||||
T Consensus        42 ~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp  113 (237)
T cd05576          42 HCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKF-----LNIPEECVKRWAAEMVVALDALH---REGIVCRDLNP  113 (237)
T ss_pred             cCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCH
Confidence            36899999999999999999999999999999998765     45889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.++++|||.+.......    ....++..|+|||......++.++|+||+|+++|++++|..|+.......
T Consensus       114 ~Nil~~~~~~~~l~df~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~  189 (237)
T cd05576         114 NNILLDDRGHIQLTYFSRWSEVEDSC----DGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGI  189 (237)
T ss_pred             HHEEEcCCCCEEEecccchhcccccc----ccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc
Confidence            99999999999999999875543221    12335677999999988888999999999999999999987754221100


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      .                   ...    .    ...+...+..+.+++.+||+.||++|||+.
T Consensus       190 ~-------------------~~~----~----~~~~~~~~~~~~~li~~~l~~dp~~R~~~~  224 (237)
T cd05576         190 N-------------------THT----T----LNIPEWVSEEARSLLQQLLQFNPTERLGAG  224 (237)
T ss_pred             c-------------------ccc----c----cCCcccCCHHHHHHHHHHccCCHHHhcCCC
Confidence            0                   000    0    000113456788999999999999999973

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=2.5e-34  Score=226.13  Aligned_cols=200  Identities=21%  Similarity=0.336  Sum_probs=155.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++...+..++|+||+++++|.+++...     ..++...+..++.|++.|+.|||   +.+++|+||+
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~  126 (264)
T cd06626          55 LLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHG-----RILDEHVIRVYTLQLLEGLAYLH---SHGIVHRDIK  126 (264)
T ss_pred             hCCCCChhheeeeEecCCEEEEEEecCCCCcHHHHHhhc-----CCCChHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            478999999999999999999999999999999999764     45778889999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcce---eecccccccccCccccccCC---cccccchhhhhhHHHHHhcCCCCc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHI---TDTVMGTLGYCAPEYMRTGV---FNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~---~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+||+++.++.++|+|||.+..........   .....++..|+|||++.+..   .+.++|+||||++++++++|..||
T Consensus       127 ~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf  206 (264)
T cd06626         127 PANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPW  206 (264)
T ss_pred             HHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCc
Confidence            999999999999999999987654332211   11345778999999988765   889999999999999999999998


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .........          ..       ....  ......+.....+..+.+++.+||+.+|.+|||+.+++.
T Consensus       207 ~~~~~~~~~----------~~-------~~~~--~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         207 SELDNEFQI----------MF-------HVGA--GHKPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             cCCcchHHH----------HH-------HHhc--CCCCCCCcccccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            643210000          00       0000  000000011123566789999999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=3.3e-34  Score=227.64  Aligned_cols=213  Identities=20%  Similarity=0.270  Sum_probs=151.6

Q ss_pred             CCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            3 SHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         3 ~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+||+++++++.++  +..++|+||++ ++|.+.+....    ..+++..+..++.|++.||.|||   +.+++|+||+
T Consensus        56 ~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~----~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~  127 (282)
T cd07831          56 PHPNILRLIEVLFDRKTGRLALVFELMD-MNLYELIKGRK----RPLPEKRVKSYMYQLLKSLDHMH---RNGIFHRDIK  127 (282)
T ss_pred             CCCCccceEEEEecCCCCcEEEEEecCC-ccHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecccC
Confidence            499999999999987  78899999997 68888887542    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++. +.++|+|||.+........  .....++..|+|||.+.. ..++.++|+||||+++|+|++|..||.....
T Consensus       128 p~ni~l~~-~~~kl~dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~  204 (282)
T cd07831         128 PENILIKD-DILKLADFGSCRGIYSKPP--YTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNE  204 (282)
T ss_pred             HHHEEEcC-CCeEEEecccccccccCCC--cCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCH
Confidence            99999999 9999999999876533221  123457888999997754 4578899999999999999999999864322


Q ss_pred             cccc------cccchhhhhhhhhccchhh-hhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDL------VCPFSEYLKNCFEDNRFTE-IVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....      ...........+....... ......... ........+..+.++|.+||..+|++|||++++++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         205 LDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTG-LRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             HHHHHHHHHHcCCCCHHHHHhhcccccccccCccccccc-HHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence            1100      0000000000000000000 000000000 00011245688999999999999999999999985

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-34  Score=228.04  Aligned_cols=194  Identities=21%  Similarity=0.357  Sum_probs=153.2

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .|||++++++++..+...++||||+++++|.+++..      ..+++..+..++.|++.||.|||   +.+++|+||+|+
T Consensus        60 ~~~~vi~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~------~~l~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~p~  130 (277)
T cd06917          60 QPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKA------GPIAEKYISVIIREVLVALKYIH---KVGVIHRDIKAA  130 (277)
T ss_pred             CCCCeeeEeeeeeeCCEEEEEEecCCCCcHHHHHHc------cCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHH
Confidence            499999999999999999999999999999998864      35789999999999999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      ||+++.++.++|+|||.+....... .......|+..|+|||.+.+ ..++.++|+||||+++|+|++|..||.......
T Consensus       131 ni~i~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~  209 (277)
T cd06917         131 NILVTNTGNVKLCDFGVAALLNQNS-SKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFR  209 (277)
T ss_pred             HEEEcCCCCEEEccCCceeecCCCc-cccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhh
Confidence            9999999999999999887654332 12233457888999998865 347889999999999999999999986432111


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                  .....   ..........+..+.+++.+||+.||.+||++.+++.
T Consensus       210 ~~~------------------~~~~~---~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~  254 (277)
T cd06917         210 AMM------------------LIPKS---KPPRLEDNGYSKLLREFVAACLDEEPKERLSAEELLK  254 (277)
T ss_pred             hhh------------------ccccC---CCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence            000                  00000   0000001124567889999999999999999999976

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=8.3e-35  Score=228.76  Aligned_cols=200  Identities=22%  Similarity=0.227  Sum_probs=156.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+..+...++++||+++++|.+++.+.     ..++...+..++.|++.||+|||   +.+++|+||+
T Consensus        49 ~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~di~  120 (265)
T cd05579          49 QAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLASLLENV-----GSLDEDVARIYIAEIVLALEYLH---SNGIIHRDLK  120 (265)
T ss_pred             hCCCcchhHHHHheecCcEEEEEEecCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HcCeecCCCC
Confidence            368999999999999999999999999999999999865     46889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-------ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCC
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      |+||+++.++.++|+|||++........       .......++..|+|||.......+.++|+||||++++++++|..|
T Consensus       121 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p  200 (265)
T cd05579         121 PDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPP  200 (265)
T ss_pred             HHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCC
Confidence            9999999999999999998765432211       122334567889999999888889999999999999999999988


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |.....                     .+..................+..+.+++.+||+.+|.+|||+.++.+.|
T Consensus       201 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l  255 (265)
T cd05579         201 FHGETP---------------------EEIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIK  255 (265)
T ss_pred             CCCCCH---------------------HHHHHHHhcCCcCCCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHh
Confidence            753221                     1111111111111111112367789999999999999999995544443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=1.8e-34  Score=229.99  Aligned_cols=200  Identities=22%  Similarity=0.225  Sum_probs=149.4

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .||||+++++++...+..+++||++. +++.++...........++...+..++.|++.||+|||.  ..+++|+||||+
T Consensus        61 ~~~~iv~~~~~~~~~~~~~~~~e~~~-~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~--~~~i~H~dlkp~  137 (288)
T cd06616          61 DCPYIVKFYGALFREGDCWICMELMD-ISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKE--ELKIIHRDVKPS  137 (288)
T ss_pred             CCCCEeeeeeEEecCCcEEEEEeccc-CCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh--cCCeeccCCCHH
Confidence            49999999999999889999999996 677664432100011568899999999999999999993  359999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC---CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG---VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~---~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||+++.++.++|+|||++........  .....++..|+|||++.+.   .++.++||||||+++|++++|..||.....
T Consensus       138 Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~  215 (288)
T cd06616         138 NILLDRNGNIKLCDFGISGQLVDSIA--KTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNS  215 (288)
T ss_pred             HEEEccCCcEEEeecchhHHhccCCc--cccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcch
Confidence            99999999999999999865433221  1233578889999998766   588999999999999999999999853320


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhc---CCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVE---DVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                    .+........   ..........+..+.+++.+||+.+|++|||+++++.
T Consensus       216 ~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~  266 (288)
T cd06616         216 V--------------------FDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLE  266 (288)
T ss_pred             H--------------------HHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            0                    0000000000   0000001235667899999999999999999999987

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-35  Score=221.36  Aligned_cols=195  Identities=21%  Similarity=0.265  Sum_probs=154.2

Q ss_pred             CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcc
Q 044155            4 HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSC   83 (239)
Q Consensus         4 H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~n   83 (239)
                      -|+||+++|+|..+..++|.||.|. -.+..++++-.    .++++..+=++...+..||.||-+  .++|+|||+||+|
T Consensus       150 cpyIV~c~GyFi~n~dV~IcMelMs-~C~ekLlkrik----~piPE~ilGk~tva~v~AL~YLKe--KH~viHRDvKPSN  222 (391)
T KOG0983|consen  150 CPYIVQCFGYFITNTDVFICMELMS-TCAEKLLKRIK----GPIPERILGKMTVAIVKALYYLKE--KHGVIHRDVKPSN  222 (391)
T ss_pred             CCeeeeeeeEEeeCchHHHHHHHHH-HHHHHHHHHhc----CCchHHhhhhhHHHHHHHHHHHHH--hcceeecccCccc
Confidence            4899999999999999999999985 45555555443    568898888899999999999997  7899999999999


Q ss_pred             eeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc---CCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           84 ILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT---GVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        84 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      ||++..|++|++|||++-.+-.+..  .+.-.|.+.|||||.+..   .+|..++|+||||+.++|+.||..||..-.  
T Consensus       223 ILlDe~GniKlCDFGIsGrlvdSkA--htrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~--  298 (391)
T KOG0983|consen  223 ILLDERGNIKLCDFGISGRLVDSKA--HTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCK--  298 (391)
T ss_pred             eEEccCCCEEeecccccceeecccc--cccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCC--
Confidence            9999999999999999866644432  223358899999999864   358899999999999999999999986422  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcC-CCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVED-VSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                        .-.+....++... .........++.+.+|+..||..|+.+||...++++
T Consensus       299 ------------------tdFe~ltkvln~ePP~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~  348 (391)
T KOG0983|consen  299 ------------------TDFEVLTKVLNEEPPLLPGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLE  348 (391)
T ss_pred             ------------------ccHHHHHHHHhcCCCCCCcccCcCHHHHHHHHHHhhcCcccCcchHHHhc
Confidence                              1122233333221 111222347889999999999999999999999876

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=6.6e-34  Score=229.85  Aligned_cols=195  Identities=23%  Similarity=0.363  Sum_probs=152.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||++++++++.+....++||||+. |+|.+.+....    ..+++..+..++.|++.|+.|||   +.+++|+||+
T Consensus        81 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~-g~l~~~~~~~~----~~l~~~~~~~i~~~i~~~l~~lH---~~~i~H~dL~  152 (317)
T cd06635          81 RIKHPNSIEYKGCYLREHTAWLVMEYCL-GSASDLLEVHK----KPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIK  152 (317)
T ss_pred             hCCCCCEEEEEEEEeeCCeEEEEEeCCC-CCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            4789999999999999999999999997 68878775432    46889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc---cCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR---TGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++.....     .....+++.|+|||.+.   ...++.++|+||||+++|+|++|..||...
T Consensus       153 p~Nil~~~~~~~kl~dfg~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~  227 (317)
T cd06635         153 AGNILLTEPGQVKLADFGSASIASP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  227 (317)
T ss_pred             cccEEECCCCCEEEecCCCccccCC-----cccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCc
Confidence            9999999999999999998754422     22345788899999874   345888999999999999999999887532


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      ...                     ...................+..+.+++.+||+.+|.+||++.++++.+
T Consensus       228 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~  278 (317)
T cd06635         228 NAM---------------------SALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHM  278 (317)
T ss_pred             cHH---------------------HHHHHHHhccCCCCCCccccHHHHHHHHHHccCCcccCcCHHHHHhCh
Confidence            100                     000011111111111123456789999999999999999999998753

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=1.9e-34  Score=226.04  Aligned_cols=198  Identities=24%  Similarity=0.303  Sum_probs=155.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++.+......++|+||+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        55 ~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~  128 (257)
T cd08225          55 KMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRG---VLFSEDQILSWFVQISLGLKHIH---DRKILHRDIK  128 (257)
T ss_pred             hCCCCChhhhhheeccCCeEEEEEecCCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCC
Confidence            36899999999999999999999999999999999976533   45789999999999999999999   8999999999


Q ss_pred             CcceeecCCC-ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++ .++++|||.+....... .......+++.|+|||...+..++.++|+||||++++++++|..||.....
T Consensus       129 ~~nil~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~  207 (257)
T cd08225         129 SQNIFLSKNGMVAKLGDFGIARQLNDSM-ELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNL  207 (257)
T ss_pred             HHHEEEcCCCCeEEecccccchhccCCc-ccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccH
Confidence            9999999886 46999999886653322 122234578899999999888899999999999999999999988753210


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           .+........... ......+..+.+++.+||..+|++|||+.+++.
T Consensus       208 ---------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  253 (257)
T cd08225         208 ---------------------HQLVLKICQGYFA-PISPNFSRDLRSLISQLFKVSPRDRPSITSILK  253 (257)
T ss_pred             ---------------------HHHHHHHhcccCC-CCCCCCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence                                 0001011111110 011134467899999999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=6.1e-34  Score=227.29  Aligned_cols=218  Identities=18%  Similarity=0.206  Sum_probs=151.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++..+...++|+||+. +++.+.+....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        59 ~l~h~ni~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlk  130 (291)
T cd07870          59 GLKHANIVLLHDIIHTKETLTFVFEYMH-TDLAQYMIQHP----GGLHPYNVRLFMFQLLRGLAYIH---GQHILHRDLK  130 (291)
T ss_pred             hcCCCCEeEEEEEEecCCeEEEEEeccc-CCHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence            4789999999999999889999999996 78877775432    34677888899999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++........ ......+++.|+|||.+.+ ..++.++|+||||+++|++++|..||+...+
T Consensus       131 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~  209 (291)
T cd07870         131 PQNLLISYLGELKLADFGLARAKSIPSQ-TYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSD  209 (291)
T ss_pred             hHHEEEcCCCcEEEeccccccccCCCCC-CCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchh
Confidence            9999999999999999998865322111 1123346888999999875 3578899999999999999999999875433


Q ss_pred             cccccc--------cchhhhhhhhhccc-hhhhhhhhhhcCCCcH-HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVC--------PFSEYLKNCFEDNR-FTEIVDHIVVEDVSSI-EKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..+...        +............. ................ .....+..+.+++.+|+..||++|||+.|++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         210 VFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             HHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence            211000        00000000000000 0000000000000000 00012456789999999999999999999874

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=1.1e-34  Score=227.56  Aligned_cols=196  Identities=19%  Similarity=0.237  Sum_probs=156.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+.++...++|+||+.+++|.+++...     ..++......++.|++.||.|||   +.+++|+||+
T Consensus        56 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~  127 (258)
T cd05578          56 ELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQK-----VKFSEEQVKFWICEIVLALEYLH---SKGIIHRDIK  127 (258)
T ss_pred             hCCCCChHHHHHhhcCCCeEEEEEeCCCCCCHHHHHHhc-----CCcCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence            478999999999999999999999999999999999764     46888999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||++++++.++|+|||.+.......  ......++..|+|||.+....++.++|+||||+++|++++|..||......
T Consensus       128 ~~nil~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~  205 (258)
T cd05578         128 PDNILLDEQGHVHITDFNIATKVTPDT--LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT  205 (258)
T ss_pred             HHHeEEcCCCCEEEeecccccccCCCc--cccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc
Confidence            999999999999999999886653322  123445778899999998888999999999999999999999998644321


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH--HHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM--VDVA  226 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~--~ell  226 (239)
                      .                  ..... ..... .....+...+..+.++|.+||+.||.+||++  .|++
T Consensus       206 ~------------------~~~~~-~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         206 I------------------RDQIR-AKQET-ADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             H------------------HHHHH-HHhcc-ccccCcccCcHHHHHHHHHHccCChhHcCCccHHHHh
Confidence            0                  00000 00000 0011112345788899999999999999999  5554

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=3.1e-34  Score=228.65  Aligned_cols=202  Identities=22%  Similarity=0.268  Sum_probs=156.6

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++.+..+...++||||+.+++|.+.+...     ..++......++.|++.||.|||   ..+++|+||+|+
T Consensus        63 ~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~ql~~~l~~lH---~~~~~H~dl~p~  134 (288)
T cd05583          63 RCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQR-----EHFTESEVRVYIAEIVLALDHLH---QLGIIYRDIKLE  134 (288)
T ss_pred             CCcchhhhheeeecCCEEEEEEecCCCCcHHHHHhhc-----CCcCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHH
Confidence            6999999999999999999999999999999998754     45788899999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC--cccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV--FNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~--~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      ||+++.++.++|+|||++...............++..|+|||...+..  .+.++|+||||+++|+|++|..||......
T Consensus       135 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~  214 (288)
T cd05583         135 NILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQ  214 (288)
T ss_pred             HeEECCCCCEEEEECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCccc
Confidence            999999999999999998765433322233445788999999987655  788999999999999999999987532110


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .                 ...+..........  ..+...+..+.+++.+||+.||++|||+.++.+.|.-
T Consensus       215 ~-----------------~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~  266 (288)
T cd05583         215 N-----------------SQSEISRRILKSKP--PFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNH  266 (288)
T ss_pred             c-----------------hHHHHHHHHHccCC--CCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcC
Confidence            0                 00011111111111  1112345678899999999999999998877765543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=5.6e-34  Score=227.69  Aligned_cols=197  Identities=16%  Similarity=0.272  Sum_probs=154.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++..++..++||||+++++|.+++..      ..+++.....++.|++.|++|||   +.+++|+||+
T Consensus        73 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~------~~~~~~~~~~~~~ql~~~l~~lH---~~givH~dl~  143 (292)
T cd06657          73 DYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH------TRMNEEQIAAVCLAVLKALSVLH---AQGVIHRDIK  143 (292)
T ss_pred             hcCCcchhheeeEEEeCCEEEEEEecCCCCcHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            36899999999999999999999999999999988754      35788899999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++....... .......++..|+|||...+..++.++|+||+|+++|++++|..||......
T Consensus       144 p~Nilv~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~  222 (292)
T cd06657         144 SDSILLTHDGRVKLSDFGFCAQVSKEV-PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL  222 (292)
T ss_pred             HHHEEECCCCCEEEcccccceeccccc-ccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            999999999999999999876543221 1122345788899999998888899999999999999999999987532110


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                  .............  .....+..+.+++.+||..+|.+||++.++++
T Consensus       223 ~~------------------~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         223 KA------------------MKMIRDNLPPKLK--NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             HH------------------HHHHHhhCCcccC--CcccCCHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence            00                  0000000000000  01134556789999999999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=2.8e-34  Score=235.33  Aligned_cols=214  Identities=18%  Similarity=0.247  Sum_probs=152.4

Q ss_pred             CCCCcccceeeEEEEeC------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++...      ...++||||+. ++|.+.+..       .++...+..++.|++.||.|||   ..++
T Consensus        71 ~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~-------~l~~~~~~~~~~ql~~aL~~LH---~~gi  139 (353)
T cd07850          71 LVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQVIQM-------DLDHERMSYLLYQMLCGIKHLH---SAGI  139 (353)
T ss_pred             hcCCCCCcceeeeeccCCCccccCcEEEEEeccC-CCHHHHHhh-------cCCHHHHHHHHHHHHHHHHHHH---hCCe
Confidence            47899999999988643      24689999997 789888753       3778888999999999999999   8999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      +|+||||+||+++.++.++|+|||++.......  ......++..|+|||.+.+..++.++||||||+++|+|++|+.||
T Consensus       140 ~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf  217 (353)
T cd07850         140 IHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLF  217 (353)
T ss_pred             eeCCCCHHHEEECCCCCEEEccCccceeCCCCC--CCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCC
Confidence            999999999999999999999999987653321  122345788899999999888999999999999999999999998


Q ss_pred             ccccccccc-------cccchhhhhhh-------hhc------cchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCC
Q 044155          155 DLVKDVHDL-------VCPFSEYLKNC-------FED------NRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKD  214 (239)
Q Consensus       155 ~~~~~~~~~-------~~~~~~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  214 (239)
                      .........       ..+..++....       ...      ..+.+..................+..+.+++.+||+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~  297 (353)
T cd07850         218 PGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVI  297 (353)
T ss_pred             CCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCC
Confidence            644321110       00000000000       000      0000000000000000000123456788999999999


Q ss_pred             CCCCCCCHHHHHH
Q 044155          215 SPADRPSMVDVAK  227 (239)
Q Consensus       215 dp~~Rps~~ell~  227 (239)
                      ||++|||+.|+++
T Consensus       298 dP~~R~t~~eiL~  310 (353)
T cd07850         298 DPEKRISVDDALQ  310 (353)
T ss_pred             ChhhCcCHHHHhc
Confidence            9999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=8.7e-34  Score=228.26  Aligned_cols=194  Identities=23%  Similarity=0.343  Sum_probs=151.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+|++++++++......++|+||+. +++.+.+....    ..++...+..++.|++.|+.|||   +.+++|+||+
T Consensus        71 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~  142 (308)
T cd06634          71 KLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHK----KPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVK  142 (308)
T ss_pred             hCCCCCcccEEEEEEcCCeeEEEEEccC-CCHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence            3689999999999999999999999997 78888776432    45788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc---cCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR---TGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++......     ....+++.|+|||.+.   ....+.++||||||+++|++++|..||...
T Consensus       143 p~nil~~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  217 (308)
T cd06634         143 AGNILLSEPGLVKLGDFGSASIMAPA-----NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (308)
T ss_pred             HHhEEECCCCcEEECCcccceeecCc-----ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccc
Confidence            99999999999999999987654322     2345788899999874   345788999999999999999999887532


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      ...                     ...................+..+.++|.+||..+|.+||++.+++..
T Consensus       218 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~  267 (308)
T cd06634         218 NAM---------------------SALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH  267 (308)
T ss_pred             cHH---------------------HHHHHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHhhC
Confidence            210                     00000011111111122455678899999999999999999998864

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-34  Score=229.07  Aligned_cols=219  Identities=17%  Similarity=0.199  Sum_probs=155.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+++..++++||++ ++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||+
T Consensus        54 ~l~~~~iv~~~~~~~~~~~~~iv~e~~~-~~l~~~~~~~~~---~~~~~~~~~~~~~~i~~~L~~lH---~~~~~H~dl~  126 (283)
T cd07835          54 ELNHPNIVRLLDVVHSENKLYLVFEFLD-LDLKKYMDSSPL---TGLDPPLIKSYLYQLLQGIAYCH---SHRVLHRDLK  126 (283)
T ss_pred             hcCCCCccCHhheeccCCeEEEEEeccC-cCHHHHHhhCCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCC
Confidence            3689999999999999999999999996 799999876532   36889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+........ ......++..|+|||++.+. .++.++|+||||+++|+|++|..||....+
T Consensus       127 p~nil~~~~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~  205 (283)
T cd07835         127 PQNLLIDREGALKLADFGLARAFGVPVR-TYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSE  205 (283)
T ss_pred             HHHEEEcCCCcEEEeecccccccCCCcc-ccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9999999999999999999865432211 11223457889999988764 468899999999999999999999864432


Q ss_pred             cccccccchhh---hhhhhhc-cchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEY---LKNCFED-NRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...........   ....+.. ....+...........  .......+..+.+++.+||+.||.+|||++|+++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         206 IDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             HHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            21111000000   0000000 0000000000000000  0011133467889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=2.6e-34  Score=228.78  Aligned_cols=215  Identities=21%  Similarity=0.295  Sum_probs=154.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++...++|+||+++++|..+....     ..+++..+..++.|++.||+|||   +.+++|+|++
T Consensus        56 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~LH---~~~i~h~~l~  127 (286)
T cd07846          56 QLRHENLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYP-----NGLDESRVRKYLFQILRGIEFCH---SHNIIHRDIK  127 (286)
T ss_pred             hcCCcchhhHHHhcccCCeEEEEEecCCccHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence            368999999999999999999999999988887766543     45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++....... .......++..|+|||++.+ ..++.++||||||+++|+|++|..||.....
T Consensus       128 p~ni~~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~  206 (286)
T cd07846         128 PENILVSQSGVVKLCDFGFARTLAAPG-EVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSD  206 (286)
T ss_pred             HHHEEECCCCcEEEEeeeeeeeccCCc-cccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCch
Confidence            999999999999999999987653322 22233457889999998875 3477899999999999999999988864322


Q ss_pred             cccccc------cchhhhhhhhhccchhhhhhhhhhcCCCc-----HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVC------PFSEYLKNCFEDNRFTEIVDHIVVEDVSS-----IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......      .+.......+.....   ...........     ......+..+.+++.+||..+|.+||++.++++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         207 IDQLYHIIKCLGNLIPRHQEIFQKNPL---FAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             HHHHHHHHHHhCCCchhhHHHhccchH---hhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence            110000      000000000000000   00000000000     001134677899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=1.1e-33  Score=228.27  Aligned_cols=193  Identities=24%  Similarity=0.373  Sum_probs=150.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||++++++++.+....++||||+. +++.+.+....    ..+++..+..++.|++.|+.|||   +.+++|+||+
T Consensus        77 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~----~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dl~  148 (313)
T cd06633          77 QLKHPNTIEYKGCYLKEHTAWLVMEYCL-GSASDLLEVHK----KPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIK  148 (313)
T ss_pred             hCCCCCCccEEEEEEeCCEEEEEEecCC-CCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            4789999999999999999999999997 68888776543    45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc---cCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR---TGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++.....     .....++..|+|||.+.   ...++.++|+||||+++|+|++|..||...
T Consensus       149 p~nili~~~~~~kL~dfg~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~  223 (313)
T cd06633         149 AGNILLTEPGQVKLADFGSASKSSP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  223 (313)
T ss_pred             hhhEEECCCCCEEEeecCCCcccCC-----CCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999998754321     22446788899999984   355788999999999999999999887533


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......                     ................+..+.+++.+||+.+|.+||++.+++.
T Consensus       224 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~  272 (313)
T cd06633         224 NAMSAL---------------------YHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELLR  272 (313)
T ss_pred             ChHHHH---------------------HHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            211000                     0000000000111233456889999999999999999999986

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.1e-33  Score=220.64  Aligned_cols=198  Identities=22%  Similarity=0.351  Sum_probs=157.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++.+......++++||+++++|.+++....    ..+++..+..++.|++.||.+||   ..+++|+||+
T Consensus        53 ~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lh---~~~i~h~dl~  125 (253)
T cd05122          53 KCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTN----QTLTESQIAYVCKELLKGLEYLH---SNGIIHRDIK  125 (253)
T ss_pred             hCCCCCEeEEEEEEecCCeEEEEEecCCCCcHHHHHhhcC----CCCCHHHHHHHHHHHHHHHHHhh---cCCEecCCCC
Confidence            4689999999999999999999999999999999987643    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+........  .....++..|+|||.+.+...+.++|+||||++++++++|..||......
T Consensus       126 p~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~  203 (253)
T cd05122         126 AANILLTSDGEVKLIDFGLSAQLSDTKA--RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPM  203 (253)
T ss_pred             HHHEEEccCCeEEEeecccccccccccc--ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchH
Confidence            9999999999999999998866543321  23456788999999998888899999999999999999999887533210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                  .....  ............+..+.+++.+||..||++|||+.++++
T Consensus       204 ~~~------------------~~~~~--~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         204 KAL------------------FKIAT--NGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             HHH------------------HHHHh--cCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            000                  00000  000000001112567899999999999999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-34  Score=226.61  Aligned_cols=217  Identities=19%  Similarity=0.208  Sum_probs=154.4

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++...  +..++|+||++ ++|.+++....    ..++...+..++.|++.||+|||   +.+++|+|
T Consensus        54 ~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~i~~~i~~al~~LH---~~~~~h~d  125 (287)
T cd07840          54 KLRHPNIVRLKEIVTSKGKGSIYMVFEYMD-HDLTGLLDSPE----VKFTESQIKCYMKQLLEGLQYLH---SNGILHRD  125 (287)
T ss_pred             hccCCCeeeheeeEecCCCCcEEEEecccc-ccHHHHHhccC----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecc
Confidence            36899999999999887  78999999997 68988886542    46889999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+|+||++++++.++|+|||.+...............++..|+|||.+.+ ..++.++||||||+++|+|++|..||...
T Consensus       126 l~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~  205 (287)
T cd07840         126 IKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGS  205 (287)
T ss_pred             CcHHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999987654332212233456788999998765 45789999999999999999999998643


Q ss_pred             cccccccccchhhhhhhhhccchhhhhh----hhh-h-cCCCc---HHHHH-HHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVD----HIV-V-EDVSS---IEKEQ-QLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~-~~~~~---~~~~~-~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .......... .....+ ....+.....    ... . .....   ..... .+..+.+++.+||..+|.+|||++++++
T Consensus       206 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         206 TELEQLEKIF-ELCGSP-TDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             ChHHHHHHHH-HHhCCC-chhhccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            3211100000 000000 0000000000    000 0 00000   00011 2677899999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-34  Score=224.32  Aligned_cols=210  Identities=17%  Similarity=0.237  Sum_probs=158.7

Q ss_pred             cceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceee
Q 044155            7 ILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILF   86 (239)
Q Consensus         7 iv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~   86 (239)
                      +|.+.+||.-.++.|||+|.+ |.|+.|++..+..   .+++...++.++.|++.++++||   +.+++|.||||+|||+
T Consensus       153 cv~m~~wFdyrghiCivfell-G~S~~dFlk~N~y---~~fpi~~ir~m~~QL~~sv~fLh---~~kl~HTDLKPENILf  225 (415)
T KOG0671|consen  153 CVQMRDWFDYRGHICIVFELL-GLSTFDFLKENNY---IPFPIDHIRHMGYQLLESVAFLH---DLKLTHTDLKPENILF  225 (415)
T ss_pred             EEeeehhhhccCceEEEEecc-ChhHHHHhccCCc---cccchHHHHHHHHHHHHHHHHHH---hcceeecCCChheEEE
Confidence            577888898899999999999 5899999998755   78999999999999999999999   9999999999999998


Q ss_pred             cCC--------------------CceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHH
Q 044155           87 NEE--------------------NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFE  146 (239)
Q Consensus        87 ~~~--------------------~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~  146 (239)
                      .+.                    -.++++|||.+......    .+....|..|+|||++.+.+++.++||||+|||++|
T Consensus       226 vss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~----hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~E  301 (415)
T KOG0671|consen  226 VSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEH----HSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVE  301 (415)
T ss_pred             eccceEEEeccCCccceeccCCCcceEEEecCCcceeccC----cceeeeccccCCchheeccCcCCccCceeeeeEEEE
Confidence            532                    24799999998664332    245667889999999999999999999999999999


Q ss_pred             HhcCCCCcccccccc------cccccchhhhhhhh------hccc--hhhhhhh-----hhhcCCCc----HHHHHHHHH
Q 044155          147 LLTGWDVSDLVKDVH------DLVCPFSEYLKNCF------EDNR--FTEIVDH-----IVVEDVSS----IEKEQQLHA  203 (239)
Q Consensus       147 ~~~g~~p~~~~~~~~------~~~~~~~~~~~~~~------~~~~--~~~~~~~-----~~~~~~~~----~~~~~~~~~  203 (239)
                      +.+|...|+.+.+.+      ...+|++.......      ..+.  |.+...+     +.......    ...+.....
T Consensus       302 lytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~  381 (415)
T KOG0671|consen  302 LYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQ  381 (415)
T ss_pred             eeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhH
Confidence            999999999887543      23334433322221      1110  1111100     00000000    011345566


Q ss_pred             HHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          204 SAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       204 ~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      +.+|++.||.+||++|+|+.|++.
T Consensus       382 LfDLl~~mL~fDP~~RiTl~EAL~  405 (415)
T KOG0671|consen  382 LFDLLRRMLEFDPARRITLREALS  405 (415)
T ss_pred             HHHHHHHHHccCccccccHHHHhc
Confidence            899999999999999999999885

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-33  Score=223.92  Aligned_cols=212  Identities=18%  Similarity=0.242  Sum_probs=154.8

Q ss_pred             CCCcccceeeEEEEeCCC-----ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            2 MSHNHILKLIGCCLETPI-----PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~-----~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      ++||||+++++++.....     .+++||++. ++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|
T Consensus        58 ~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~-~~l~~~l~~~~~---~~l~~~~~~~~~~~i~~al~~LH---~~~i~h  130 (287)
T cd07838          58 FEHPNIVRLLDVCHGPRTDRELKLTLVFEHVD-QDLATYLSKCPK---PGLPPETIKDLMRQLLRGVDFLH---SHRIVH  130 (287)
T ss_pred             cCCCCcceEEEEEeeccCCCCceeEEEehhcc-cCHHHHHHHccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeee
Confidence            579999999999987776     899999997 689888876432   35889999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      +||+|+||+++.++.++|+|||.+........  .....++..|+|||.+.+..++.++|+||||+++|+|++|..||..
T Consensus       131 ~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~  208 (287)
T cd07838         131 RDLKPQNILVTSDGQVKIADFGLARIYSFEMA--LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRG  208 (287)
T ss_pred             ccCChhhEEEccCCCEEEeccCcceeccCCcc--cccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccC
Confidence            99999999999999999999998866533221  1223467889999999988899999999999999999999888764


Q ss_pred             ccccccccccchhhhhhhhh--ccchh-------hhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFE--DNRFT-------EIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ........    ........  ...+.       ........... .......+..+.+++.+||..||.+||++++++.
T Consensus       209 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         209 TSEADQLD----KIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSF-KSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             CChHHHHH----HHHHHcCCCChHhcCCCcccchhhcccccccch-hhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence            33211100    00000000  00000       00000000000 1111244677889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=1.8e-33  Score=220.26  Aligned_cols=199  Identities=23%  Similarity=0.299  Sum_probs=158.8

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++.+...  ...++++|++++++|.+++...     ..+++..+..++.|++.||.|||   +.+++|+|
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lh---~~~~~h~d  126 (260)
T cd06606          55 SLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKF-----GKLPEPVIRKYTRQILEGLAYLH---SNGIVHRD  126 (260)
T ss_pred             HcCCCCEeeEEEEEecCCCCeEEEEEEecCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccC
Confidence            47899999999999988  7889999999999999999865     46889999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      ++|+||+++.++.++|+|||.+......... ......++..|+|||.......+.++|+||||++++++++|..||...
T Consensus       127 l~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  206 (260)
T cd06606         127 IKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSEL  206 (260)
T ss_pred             CCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999999998765433210 123455788999999998888999999999999999999999998643


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .+...                    ..............+...+..+.+++.+|+..+|.+|||+.+++.
T Consensus       207 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         207 GNPMA--------------------ALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             CchHH--------------------HHHhccccCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence            31000                    000000000011111234678999999999999999999999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-33  Score=221.72  Aligned_cols=197  Identities=20%  Similarity=0.242  Sum_probs=154.1

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++.+.  +..++++||+++++|.+++...     ..++......++.|++.||.|||   +.+++|+|
T Consensus        60 ~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-----~~l~~~~~~~~~~~i~~al~~LH---~~~i~H~d  131 (264)
T cd06653          60 NLRHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAY-----GALTENVTRRYTRQILQGVSYLH---SNMIVHRD  131 (264)
T ss_pred             HcCCCCcceEEEEEEcCCCCEEEEEEEeCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCC
Confidence            47899999999998764  4578999999999999998764     45788889999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||+||+++.++.++|+|||+++.......  .......++..|+|||.+.+..++.++|+||||++++++++|+.||..
T Consensus       132 l~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  211 (264)
T cd06653         132 IKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAE  211 (264)
T ss_pred             CCHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCc
Confidence            999999999999999999999875432111  111234578899999999888889999999999999999999999853


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                     .+.+.+..........+...++.+.+++.+||. +|..|||+.+++.
T Consensus       212 ~~~---------------------~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         212 YEA---------------------MAAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             cCH---------------------HHHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence            211                     011111111111112233566789999999999 5799999998875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=1.3e-33  Score=227.40  Aligned_cols=216  Identities=18%  Similarity=0.240  Sum_probs=152.4

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++|+||+++++++.+.  +..++||||+. ++|.+++....    ..+++..+..++.|++.||.|||   +.+++|+|
T Consensus        62 ~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~----~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~d  133 (309)
T cd07845          62 NLRHPNIVELKEVVVGKHLDSIFLVMEYCE-QDLASLLDNMP----TPFSESQVKCLMLQLLRGLQYLH---ENFIIHRD  133 (309)
T ss_pred             hCCCCCCcceEEEEecCCCCeEEEEEecCC-CCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCC
Confidence            47899999999998765  45789999997 68988887543    46889999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |||+||+++.++.++|+|||.+........ ......++..|+|||.+.+ ..++.++|+||||+++|+|++|..||...
T Consensus       134 l~p~nil~~~~~~~kL~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~  212 (309)
T cd07845         134 LKVSNLLLTDKGCLKIADFGLARTYGLPAK-PMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGK  212 (309)
T ss_pred             CCHHHEEECCCCCEEECccceeeecCCccC-CCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999876543221 1122235778999998875 45789999999999999999999998643


Q ss_pred             cccccccccchhhhhhhhhccchhhhhh-----h-hhh-cCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVD-----H-IVV-EDVSSI--EKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~-~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ........ .......+ ....+.....     . ... ......  .....++.+.++|.+||..||++|||+.++++
T Consensus       213 ~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~  289 (309)
T cd07845         213 SEIEQLDL-IIQLLGTP-NESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALE  289 (309)
T ss_pred             CHHHHHHH-HHHhcCCC-ChhhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            32111000 00000000 0000000000     0 000 000000  00123567889999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=1.6e-33  Score=226.60  Aligned_cols=218  Identities=18%  Similarity=0.233  Sum_probs=150.3

Q ss_pred             CCCCcccceeeEEEEeCCC--------ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC
Q 044155            1 QMSHNHILKLIGCCLETPI--------PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR   72 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~--------~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~   72 (239)
                      +++||||+++++++.....        .++||||+. ++|.+.+....    ..+++..+..++.|++.||.|||   ++
T Consensus        67 ~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH---~~  138 (310)
T cd07865          67 LLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCE-HDLAGLLSNKN----VKFTLSEIKKVMKMLLNGLYYIH---RN  138 (310)
T ss_pred             hCCCCCccceEEEEecccccccCCCceEEEEEcCCC-cCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            4789999999999876543        489999997 68888876542    36889999999999999999999   89


Q ss_pred             CeeeccccCcceeecCCCceeEcccccccccCCCCc---ceeecccccccccCccccccCC-cccccchhhhhhHHHHHh
Q 044155           73 PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET---HITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        73 ~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~  148 (239)
                      +++|+||||+||+++.++.++|+|||.+........   .......++..|+|||.+.+.. ++.++|+||||+++|+|+
T Consensus       139 ~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~  218 (310)
T cd07865         139 KILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMW  218 (310)
T ss_pred             CeeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHH
Confidence            999999999999999999999999999875532221   1122345678899999886643 688999999999999999


Q ss_pred             cCCCCcccccccccccccchhhh----hhhhhccchhhhhhhh-hhcCCCcHHH-----HHHHHHHHHHHhhhcCCCCCC
Q 044155          149 TGWDVSDLVKDVHDLVCPFSEYL----KNCFEDNRFTEIVDHI-VVEDVSSIEK-----EQQLHASAQVTFECIKDSPAD  218 (239)
Q Consensus       149 ~g~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~li~~cl~~dp~~  218 (239)
                      +|..||........... .....    ...+............ ..........     ...+..+.++|.+||..||.+
T Consensus       219 t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~  297 (310)
T cd07865         219 TRSPIMQGNTEQHQLTL-ISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAK  297 (310)
T ss_pred             hCCCCCCCCCHHHHHHH-HHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhh
Confidence            99988864332111000 00000    0000000000000000 0000000000     012345679999999999999


Q ss_pred             CCCHHHHHH
Q 044155          219 RPSMVDVAK  227 (239)
Q Consensus       219 Rps~~ell~  227 (239)
                      |||++++++
T Consensus       298 R~t~~e~l~  306 (310)
T cd07865         298 RIDADTALN  306 (310)
T ss_pred             ccCHHHHhc
Confidence            999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.8e-34  Score=235.92  Aligned_cols=194  Identities=23%  Similarity=0.304  Sum_probs=164.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      .|+|||||+++.+.+.....++||||+.+|.+.+++.+.     .++....+..++.|+..|++|||   ++.|+|||||
T Consensus       111 ~l~HPnIvkl~~v~~t~~~lylV~eya~~ge~~~yl~~~-----gr~~e~~ar~~F~q~vsaveYcH---~k~ivHrdLk  182 (596)
T KOG0586|consen  111 SLNHPNIVKLFSVIETEATLYLVMEYASGGELFDYLVKH-----GRMKEKEARAKFRQIVSAVEYCH---SKNIVHRDLK  182 (596)
T ss_pred             hcCCcceeeeeeeeeecceeEEEEEeccCchhHHHHHhc-----ccchhhhhhhhhHHHHHHHHHHh---hcceeccccc
Confidence            379999999999999999999999999999999999987     55666889999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ++|++++.+.++||+|||++..+..+  .....+.|++.|.|||.+.+..+ .+..|+||+|+++|.++.|..||++   
T Consensus       183 ~eNilL~~~mnikIaDfgfS~~~~~~--~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG---  257 (596)
T KOG0586|consen  183 AENILLDENMNIKIADFGFSTFFDYG--LMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDG---  257 (596)
T ss_pred             hhhcccccccceeeeccccceeeccc--ccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCC---
Confidence            99999999999999999999887533  34568889999999999998774 5789999999999999999888753   


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                        ....++....+.+.+.-+  -.++.+..+++.+++..+|.+|++.+++.+
T Consensus       258 ------------------~~lk~Lr~rvl~gk~rIp--~~ms~dce~lLrk~lvl~Pskr~~~dqim~  305 (596)
T KOG0586|consen  258 ------------------QNLKELRPRVLRGKYRIP--FYMSCDCEDLLRKFLVLNPSKRGPCDQIMK  305 (596)
T ss_pred             ------------------cccccccchheeeeeccc--ceeechhHHHHHHhhccCccccCCHHHhhh
Confidence                              233344444444443322  245667889999999999999999999876

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=1.2e-33  Score=224.73  Aligned_cols=218  Identities=17%  Similarity=0.206  Sum_probs=155.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||++ ++|.+++......  ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        54 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~h~dl~  127 (284)
T cd07836          54 ELKHENIVRLHDVIHTENKLMLVFEYMD-KDLKKYMDTHGVR--GALDPNTVKSFTYQLLKGIAFCH---ENRVLHRDLK  127 (284)
T ss_pred             hhcCCCEeeeeeeEeeCCcEEEEEecCC-ccHHHHHHhcCCC--CCcCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCC
Confidence            4789999999999999999999999998 6898888754321  45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||++++++.++++|||.+........ ......++..|++||.+.+. .++.++|+||||+++|++++|..||.....
T Consensus       128 p~ni~~~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~  206 (284)
T cd07836         128 PQNLLINKRGELKLADFGLARAFGIPVN-TFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNN  206 (284)
T ss_pred             HHHEEECCCCcEEEeecchhhhhcCCcc-ccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence            9999999999999999999865432211 11233467889999988654 478899999999999999999999864332


Q ss_pred             cccccccchhhhhhhhhccchhhhhh-hhhhcCCC-------cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVD-HIVVEDVS-------SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ........ .....+ ....+..... ........       .......+..+.+++.+||+.||.+||++.++++
T Consensus       207 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         207 EDQLLKIF-RIMGTP-TESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             HHHHHHHH-HHhCCC-ChhhHHHHhcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            11110000 000000 0000000000 00000000       0011234567889999999999999999999875

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=8.2e-34  Score=227.61  Aligned_cols=217  Identities=19%  Similarity=0.198  Sum_probs=151.9

Q ss_pred             CCCCcccceeeEEEEeCC----------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCC
Q 044155            1 QMSHNHILKLIGCCLETP----------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGF   70 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~----------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~   70 (239)
                      +++||||+++++++.+..          ..++|+||++ +++.+.+....    ..+++..+..++.|++.||+|||   
T Consensus        62 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH---  133 (302)
T cd07864          62 QLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMD-HDLMGLLESGL----VHFSEDHIKSFMKQLLEGLNYCH---  133 (302)
T ss_pred             hCCCCCeeeeeheecCcchhhhccccCCcEEEEEcccC-ccHHHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHH---
Confidence            478999999999987654          7889999998 57877776542    46889999999999999999999   


Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~  149 (239)
                      +.+++|+||||+||++++++.++|+|||.+...............++..|+|||.+.+ ..++.++||||||++++++++
T Consensus       134 ~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~  213 (302)
T cd07864         134 KKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFT  213 (302)
T ss_pred             hCCeecCCCCHHHEEECCCCcEEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999987654332211222345778999998865 347889999999999999999


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhh------hcCC---CcHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIV------VEDV---SSIEKEQQLHASAQVTFECIKDSPADRP  220 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~li~~cl~~dp~~Rp  220 (239)
                      |+.||............ ......+. ...++.......      ....   ........+..+.+++.+||..||.+||
T Consensus       214 g~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp  291 (302)
T cd07864         214 KKPIFQANQELAQLELI-SRLCGSPC-PAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRC  291 (302)
T ss_pred             CCCCCCCCChHHHHHHH-HHHhCCCC-hhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCC
Confidence            99998643321111000 00000000 000000000000      0000   0001112356789999999999999999


Q ss_pred             CHHHHHH
Q 044155          221 SMVDVAK  227 (239)
Q Consensus       221 s~~ell~  227 (239)
                      |++++++
T Consensus       292 ~~~~il~  298 (302)
T cd07864         292 TAEEALN  298 (302)
T ss_pred             CHHHHhc
Confidence            9999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=2e-33  Score=219.91  Aligned_cols=200  Identities=24%  Similarity=0.325  Sum_probs=158.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||++++++.+..+...++|+|++++++|.+++...... ...++...+..++.+++.||.+||   +.+++|+||+
T Consensus        55 ~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lh---~~~~~H~dl~  130 (258)
T cd08215          55 KLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKE-GKPFPEEQILDWFVQLCLALKYLH---SRKILHRDIK  130 (258)
T ss_pred             hcCCCChhheEEEEecCCEEEEEEEecCCCcHHHHHHHhhcc-CCCcCHHHHHHHHHHHHHHHHHHH---hCCEecccCC
Confidence            368999999999999999999999999999999999864311 156889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+....... .......+++.|+|||.......+.++|+||+|++++++++|..||..... 
T Consensus       131 ~~nil~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~-  208 (258)
T cd08215         131 PQNIFLTSNGLVKLGDFGISKVLSSTV-DLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENL-  208 (258)
T ss_pred             hHHeEEcCCCcEEECCccceeecccCc-ceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcH-
Confidence            999999999999999999886653322 223345678889999999888899999999999999999999988753220 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          .+........... ..+...+..+.+++.+||..+|.+|||+.++++
T Consensus       209 --------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         209 --------------------LELALKILKGQYP-PIPSQYSSELRNLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             --------------------HHHHHHHhcCCCC-CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                                0111111111110 111134567889999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-33  Score=224.20  Aligned_cols=216  Identities=19%  Similarity=0.208  Sum_probs=156.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++..+...++|+||++ ++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        54 ~l~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~  125 (283)
T cd05118          54 ELNHPNIIKLLDVFRHKGDLYLVFEFMD-TDLYKLIKDRQ----RGLPESLIKSYLYQLLQGLAFCH---SHGILHRDLK  125 (283)
T ss_pred             HhcCCCcchHHHhhccCCCEEEEEeccC-CCHHHHHHhhc----ccCCHHHHHHHHHHHHHHHHHHH---HCCeeecCcC
Confidence            3689999999999999999999999997 68888887643    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+........ ......++..|+|||.+.+. .++.++|+||||+++|++++|+.||.....
T Consensus       126 p~nili~~~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~  204 (283)
T cd05118         126 PENLLINTEGVLKLADFGLARSFGSPVR-PYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSE  204 (283)
T ss_pred             HHHEEECCCCcEEEeeeeeeEecCCCcc-cccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            9999999999999999998866543321 11223467789999998776 688999999999999999999988864332


Q ss_pred             cccccccchhhhhhhhhccchhhhhh------hhhh-cCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVD------HIVV-EDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ........... ..+ ....+.....      .... ...  ........+..+.++|.+||+.||.+||++.+++.
T Consensus       205 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         205 IDQLFKIFRTL-GTP-DPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             HHHHHHHHHHc-CCC-chHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence            11110000000 000 0000000000      0000 000  01112346788999999999999999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=1.9e-33  Score=224.82  Aligned_cols=218  Identities=15%  Similarity=0.150  Sum_probs=151.3

Q ss_pred             CCcccceeeEEEEeCCC-----ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeec
Q 044155            3 SHNHILKLIGCCLETPI-----PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFR   77 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~-----~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~   77 (239)
                      +||||+++++++.....     .++||||++ ++|.+++..........+++..+..++.||+.||.|||   +.+++|+
T Consensus        59 ~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~  134 (295)
T cd07837          59 ESIYIVRLLDVEHVEEKNGKPSLYLVFEYLD-SDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCH---KHGVMHR  134 (295)
T ss_pred             CCCCccceeeeEeecCCCCCceEEEEeeccC-cCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeec
Confidence            47999999999886655     789999998 58988887643321246789999999999999999999   8999999


Q ss_pred             cccCcceeecC-CCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           78 NFKTSCILFNE-ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        78 dlk~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      ||||+||+++. ++.++|+|||++........ ......+++.|+|||.+.+ ..++.++|+||||+++|+|++|..||.
T Consensus       135 dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~  213 (295)
T cd07837         135 DLKPQNLLVDKQKGLLKIADLGLGRAFSIPVK-SYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFP  213 (295)
T ss_pred             CCChHHEEEecCCCeEEEeecccceecCCCcc-ccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCC
Confidence            99999999998 88999999998865422211 1112345778999998865 457899999999999999999999886


Q ss_pred             cccccccccccchhhhhhhhhccchhhhh---hhhhhcCCCcH----HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIV---DHIVVEDVSSI----EKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...........+... ..+ ....+....   ...........    .....+..+.++|.+||..||.+|||++|++.
T Consensus       214 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         214 GDSELQQLLHIFKLL-GTP-TEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             CCCHHHHHHHHHHHh-CCC-ChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            533221111000000 000 000000000   00000000000    01134677899999999999999999999875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=1.3e-33  Score=225.73  Aligned_cols=219  Identities=16%  Similarity=0.200  Sum_probs=151.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++||||++ ++|.+.+.....   ..++......++.|++.||+|||   +++++|+||+
T Consensus        57 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dl~  129 (294)
T PLN00009         57 EMQHGNIVRLQDVVHSEKRLYLVFEYLD-LDLKKHMDSSPD---FAKNPRLIKTYLYQILRGIAYCH---SHRVLHRDLK  129 (294)
T ss_pred             hccCCCEeeEEEEEecCCeEEEEEeccc-ccHHHHHHhCCC---CCcCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence            4789999999999999999999999996 688888865432   34578888899999999999999   8999999999


Q ss_pred             CcceeecC-CCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNE-ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+||+++. ++.+||+|||++....... .......+++.|+|||.+.+. .++.++|+||||+++|++++|..||....
T Consensus       130 p~nill~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~  208 (294)
T PLN00009        130 PQNLLIDRRTNALKLADFGLARAFGIPV-RTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDS  208 (294)
T ss_pred             cceEEEECCCCEEEEcccccccccCCCc-cccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999985 4578999999986543221 111233567889999988664 57889999999999999999999986543


Q ss_pred             ccccccccchhh---hhhhhhc-cchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEY---LKNCFED-NRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ........+...   ....+.. ....+.............  .....+..+.+++.+||+.+|++|||+.++++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        209 EIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             HHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence            221111000000   0000000 000000000000000000  01134566889999999999999999999986

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=1.8e-33  Score=225.23  Aligned_cols=196  Identities=21%  Similarity=0.289  Sum_probs=149.7

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CCeeeccccC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RPIVFRNFKT   81 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~i~H~dlk~   81 (239)
                      .||||+++++++.+....+++|||+. +++.+++....    ..+++..+..++.|++.|++|||   + .+++|+||+|
T Consensus        72 ~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~l~~~~~----~~l~~~~~~~i~~~i~~~l~~lH---~~~~i~H~dl~p  143 (296)
T cd06618          72 DCPYIVKCYGYFITDSDVFICMELMS-TCLDKLLKRIQ----GPIPEDILGKMTVAIVKALHYLK---EKHGVIHRDVKP  143 (296)
T ss_pred             CCCchHhhheeeecCCeEEEEeeccC-cCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---hhCCEecCCCcH
Confidence            59999999999999999999999996 68877776532    46888999999999999999999   6 5999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC----cccccchhhhhhHHHHHhcCCCCcccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV----FNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      +||+++.++.++|+|||++........  .....++..|+|||.+.+..    ++.++|+||||+++|+|++|+.||...
T Consensus       144 ~nill~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  221 (296)
T cd06618         144 SNILLDASGNVKLCDFGISGRLVDSKA--KTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNC  221 (296)
T ss_pred             HHEEEcCCCCEEECccccchhccCCCc--ccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcc
Confidence            999999999999999999865432221  12234678899999987553    788999999999999999999998542


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCC-cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS-SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      ....+                    ........... .......+.++.+++.+||..||.+|||++++++.
T Consensus       222 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         222 KTEFE--------------------VLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             hhHHH--------------------HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            21100                    00000000000 00001234678999999999999999999999763

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=8.3e-34  Score=230.84  Aligned_cols=217  Identities=18%  Similarity=0.266  Sum_probs=153.9

Q ss_pred             CCCCcccceeeEEEEe----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            1 QMSHNHILKLIGCCLE----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +++||||+++++++..    ....++||||+. ++|.+++...     ..++...+..++.|++.||.|||   +.+++|
T Consensus        60 ~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-----~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH  130 (334)
T cd07855          60 HFKHDNIIAIRDILRPPGADFKDVYVVMDLME-SDLHHIIHSD-----QPLTEEHIRYFLYQLLRGLKYIH---SANVIH  130 (334)
T ss_pred             hcCCCCccCHHHhccccCCCCceEEEEEehhh-hhHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeec
Confidence            4789999999998763    345789999996 7999988754     45889999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcc---eeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCC
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETH---ITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      +||||+||+++.++.++|+|||++.........   ......++..|+|||.+.+ ..++.++|+||||+++|+|++|+.
T Consensus       131 ~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~  210 (334)
T cd07855         131 RDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQ  210 (334)
T ss_pred             CCCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCC
Confidence            999999999999999999999998665332211   1123467889999998765 458899999999999999999999


Q ss_pred             Ccccccccccc-------cccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          153 VSDLVKDVHDL-------VCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       153 p~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      ||.........       ..+........ ............-.....  .......+..+.++|.+||+.+|.+|||++
T Consensus       211 pf~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~  289 (334)
T cd07855         211 LFPGKNYVHQLKLILSVLGSPSEEVLNRI-GSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVE  289 (334)
T ss_pred             ccCCCChHHHHHHHHHHhCCChhHhhhhh-chhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHH
Confidence            98643321110       00000000000 000000000000000000  001123467899999999999999999999


Q ss_pred             HHHH
Q 044155          224 DVAK  227 (239)
Q Consensus       224 ell~  227 (239)
                      +++.
T Consensus       290 ~~l~  293 (334)
T cd07855         290 QALQ  293 (334)
T ss_pred             HHHh
Confidence            9887

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=1.3e-33  Score=221.77  Aligned_cols=199  Identities=20%  Similarity=0.282  Sum_probs=155.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++|+||+++++|.+++...... ...+++..+..++.|++.||.|||   +.+++|+||+
T Consensus        58 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~~l~  133 (260)
T cd08222          58 KLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHT-GKTLSENQVCEWFIQLLLGVHYMH---QRRILHRDLK  133 (260)
T ss_pred             hCCCCcHHHHHHHHhcCCceEEEEEeCCCCCHHHHHHHHhhc-ccccCHHHHHHHHHHHHHHHHHHH---HcCccccCCC
Confidence            468999999999999888999999999999999888653211 156889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||++++ +.++|+|||.+....... .......+++.|+|||...+..++.++|+||||+++|++++|..||....  
T Consensus       134 ~~nili~~-~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~--  209 (260)
T cd08222         134 AKNIFLKN-NLLKIGDFGVSRLLMGSC-DLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN--  209 (260)
T ss_pred             hhheEeec-CCEeecccCceeecCCCc-ccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc--
Confidence            99999975 569999999886653322 12234457888999999888888899999999999999999988874211  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                         ............. +..+...+.++.++|.+||..+|.+||++.++++
T Consensus       210 -------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         210 -------------------FLSVVLRIVEGPT-PSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             -------------------HHHHHHHHHcCCC-CCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence                               0011111111111 1112355678899999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-33  Score=229.77  Aligned_cols=197  Identities=19%  Similarity=0.237  Sum_probs=148.0

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .|.+||++++|-..++..+||||+=+ .+|...+++...    ..+.-.++.+..||+.++.++|   ..||||.||||.
T Consensus       418 g~~~IIqL~DYEv~d~~lYmvmE~Gd-~DL~kiL~k~~~----~~~~~~lk~ywkqML~aV~~IH---~~gIVHSDLKPA  489 (677)
T KOG0596|consen  418 GHDKIIQLYDYEVTDGYLYMVMECGD-IDLNKILKKKKS----IDPDWFLKFYWKQMLLAVKTIH---QHGIVHSDLKPA  489 (677)
T ss_pred             CCceEEEEeeeeccCceEEEEeeccc-ccHHHHHHhccC----CCchHHHHHHHHHHHHHHHHHH---HhceeecCCCcc
Confidence            58899999999999999999999987 899999987653    3343477888999999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcce-eecccccccccCccccccCC-----------cccccchhhhhhHHHHHhcC
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHI-TDTVMGTLGYCAPEYMRTGV-----------FNEKSNVFSFSVFLFELLTG  150 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~-----------~~~~~Di~slG~~l~~~~~g  150 (239)
                      |+|+-. |.+||+|||++.......+.. ...-.||+-||+||.+....           .+.++||||||||+|+|+.|
T Consensus       490 NFLlVk-G~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYg  568 (677)
T KOG0596|consen  490 NFLLVK-GRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYG  568 (677)
T ss_pred             cEEEEe-eeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhc
Confidence            999854 579999999998775443332 23456999999999885432           56789999999999999999


Q ss_pred             CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      +.||+.....-.                +...+.+....-.+.. .  ....++.+++..||.+||.+|||+.+||+
T Consensus       569 ktPf~~~~n~~a----------------Kl~aI~~P~~~Iefp~-~--~~~~~li~~mK~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  569 KTPFGQIINQIA----------------KLHAITDPNHEIEFPD-I--PENDELIDVMKCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             CCchHHHHHHHH----------------HHHhhcCCCccccccC-C--CCchHHHHHHHHHHhcCcccCCCcHHHhc
Confidence            999864331100                1111111100000000 0  11122889999999999999999999986

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=1.1e-33  Score=230.29  Aligned_cols=217  Identities=22%  Similarity=0.271  Sum_probs=152.5

Q ss_pred             CC-CCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeec
Q 044155            1 QM-SHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFR   77 (239)
Q Consensus         1 ~l-~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~   77 (239)
                      ++ +||||+++++++...  ...++||||+. ++|.+++...      .+++..+..++.|++.||.|||   +.+++|+
T Consensus        62 ~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~------~~~~~~~~~i~~qi~~~L~~LH---~~~i~H~  131 (337)
T cd07852          62 ELGDHPNIVKLLNVIKAENDKDIYLVFEYME-TDLHAVIRAN------ILEDVHKRYIMYQLLKALKYIH---SGNVIHR  131 (337)
T ss_pred             HhcCCCCccceeeeeccCCCceEEEEecccc-cCHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH---HCCeecC
Confidence            35 899999999998653  35789999997 6999888653      4678888889999999999999   8999999


Q ss_pred             cccCcceeecCCCceeEcccccccccCCCCc----ceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCC
Q 044155           78 NFKTSCILFNEENVAKLFDFSLSISIPEGET----HITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        78 dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      ||||+||+++.++.++|+|||.+........    .......++..|+|||.+.+ ..++.++|+||||+++|+|++|+.
T Consensus       132 dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~  211 (337)
T cd07852         132 DLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKP  211 (337)
T ss_pred             CCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999876543221    12234467889999998765 457889999999999999999999


Q ss_pred             Ccccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCCCc--HHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          153 VSDLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVSS--IEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       153 p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      ||...........       +..+.... ....................  ......+..+.++|..||+.||.+|||+.
T Consensus       212 pf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~  290 (337)
T cd07852         212 LFPGTSTLNQLEKIIEVIGPPSAEDIES-IKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAE  290 (337)
T ss_pred             CCCCCChHHHHHHHHHHhCCCCHHHHHH-HHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHH
Confidence            9864322111000       00000000 00000000010000000000  00112467789999999999999999999


Q ss_pred             HHHHH
Q 044155          224 DVAKK  228 (239)
Q Consensus       224 ell~~  228 (239)
                      ++++.
T Consensus       291 ~il~~  295 (337)
T cd07852         291 EALEH  295 (337)
T ss_pred             HHhhC
Confidence            99973

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=2.3e-33  Score=219.66  Aligned_cols=198  Identities=18%  Similarity=0.250  Sum_probs=158.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++......++|+||+++++|.+++...... ...+++.....++.|++.||++||   +.+++|+||+
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lh---~~~i~h~~l~  130 (256)
T cd08530          55 SVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKK-RKLIPEQEIWRIFIQLLRGLQALH---EQKILHRDLK  130 (256)
T ss_pred             hCCCCCchhhhhhhccCCEEEEEehhcCCCCHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCC
Confidence            468999999999999999999999999999999988763211 145788899999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++++|||++.......   .....++..|+|||.+.+..++.++|+||||++++++++|..||..... 
T Consensus       131 ~~ni~~~~~~~~kl~d~g~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~-  206 (256)
T cd08530         131 SANILLVANDLVKIGDLGISKVLKKNM---AKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSM-  206 (256)
T ss_pred             cceEEEecCCcEEEeeccchhhhccCC---cccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-
Confidence            999999999999999999987654331   2234577889999999888889999999999999999999998753221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          .+............ .....+.++.+++.+||..+|.+|||+.++++
T Consensus       207 --------------------~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         207 --------------------QDLRYKVQRGKYPP-IPPIYSQDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             --------------------HHHHHHHhcCCCCC-CchhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                                01111111111111 12255677999999999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=3.8e-33  Score=222.60  Aligned_cols=198  Identities=22%  Similarity=0.300  Sum_probs=152.6

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +|+||+++++.+..+...++|+||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+||+|+
T Consensus        63 ~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~  134 (290)
T cd05613          63 QSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQR-----ERFKEQEVQIYSGEIVLALEHLH---KLGIIYRDIKLE  134 (290)
T ss_pred             cCCChhceeeEeecCCeEEEEEecCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHH
Confidence            5999999999999888899999999999999999765     55788899999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC--CcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG--VFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      ||+++.++.++|+|||++...............++..|+|||.+...  .++.++|+||||+++|++++|..||......
T Consensus       135 nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~  214 (290)
T cd05613         135 NILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEK  214 (290)
T ss_pred             HeEECCCCCEEEeeCccceecccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCcc
Confidence            99999999999999999866533222222344578899999998753  4678999999999999999999987532110


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                       ....+..........  ..+...+..+.+++.+||..||.+||     ++++++.
T Consensus       215 -----------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~  267 (290)
T cd05613         215 -----------------NSQAEISRRILKSEP--PYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKK  267 (290)
T ss_pred             -----------------ccHHHHHHHhhccCC--CCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHc
Confidence                             000111111111110  11123456788999999999999997     6777665

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=9.8e-34  Score=216.88  Aligned_cols=211  Identities=21%  Similarity=0.271  Sum_probs=165.2

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .|+||++++++|++...+|+|||-+.||+|.+.+.+.     ..+++.++.++..+|+.||.|||   .+||.||||||+
T Consensus       134 gh~nilqLiefFEdd~~FYLVfEKm~GGplLshI~~~-----~~F~E~EAs~vvkdia~aLdFlH---~kgIAHRDlKPE  205 (463)
T KOG0607|consen  134 GHKNILQLIEFFEDDTRFYLVFEKMRGGPLLSHIQKR-----KHFNEREASRVVKDIASALDFLH---TKGIAHRDLKPE  205 (463)
T ss_pred             CCccHHHHHHHhcccceEEEEEecccCchHHHHHHHh-----hhccHHHHHHHHHHHHHHHHHHh---hcCcccccCCcc
Confidence            5999999999999999999999999999999999887     67899999999999999999999   999999999999


Q ss_pred             ceeecCCCc---eeEcccccccccCCCC------cceeecccccccccCccccc-----cCCcccccchhhhhhHHHHHh
Q 044155           83 CILFNEENV---AKLFDFSLSISIPEGE------THITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        83 nil~~~~~~---~~l~dfg~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~~l~~~~  148 (239)
                      |||-...+.   +||+||.+........      +....+..|+..|||||+..     ...|+.+.|.||||+++|-|+
T Consensus       206 NiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImL  285 (463)
T KOG0607|consen  206 NILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIML  285 (463)
T ss_pred             ceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHH
Confidence            999876554   6999998765432111      12234567889999999763     245889999999999999999


Q ss_pred             cCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHH--HHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          149 TGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEK--EQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       149 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                      +|..||.++++..--..      +......--..+...+..+.+.-+..  ...+.+.+++|+..+..|+..|.++.+++
T Consensus       286 sGYpPFvG~Cg~dCGWd------rGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vl  359 (463)
T KOG0607|consen  286 SGYPPFVGHCGADCGWD------RGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVL  359 (463)
T ss_pred             hCCCCccCccCCcCCcc------CCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhcc
Confidence            99999998886321100      11111111233444555555554433  25677889999999999999999999887


Q ss_pred             H
Q 044155          227 K  227 (239)
Q Consensus       227 ~  227 (239)
                      .
T Consensus       360 n  360 (463)
T KOG0607|consen  360 N  360 (463)
T ss_pred             C
Confidence            6

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-33  Score=222.68  Aligned_cols=215  Identities=18%  Similarity=0.231  Sum_probs=154.2

Q ss_pred             CC-CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MS-HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~-H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++ ||||+++++++..++..++||||+ +++|.+.+.....   ..+++..+..++.|++.+|.|||   +.+++|+||+
T Consensus        54 ~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~dl~  126 (283)
T cd07830          54 LNEHPNIVKLKEVFRENDELYFVFEYM-EGNLYQLMKDRKG---KPFSESVIRSIIYQILQGLAHIH---KHGFFHRDLK  126 (283)
T ss_pred             ccCCCCchhHHHHhhcCCcEEEEEecC-CCCHHHHHHhccc---ccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            45 999999999999999999999999 6899998877532   46789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+........  .....++..|+|||++.. ..++.++|+||||++++++++|..||.....
T Consensus       127 ~~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~  204 (283)
T cd07830         127 PENLLVSGPEVVKIADFGLAREIRSRPP--YTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSE  204 (283)
T ss_pred             hhhEEEcCCCCEEEeecccceeccCCCC--cCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCCh
Confidence            9999999999999999999865533221  123457788999998754 4578999999999999999999988854322


Q ss_pred             cccccccchhhhhhhhhccchhhh------hhhhhhcCCCc---HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEI------VDHIVVEDVSS---IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....... ......+. ...+.+.      ...........   ......+..+.+++.+||..||.+|||++|++.
T Consensus       205 ~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         205 IDQLYKI-CSVLGTPT-KQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             HHHHHHH-HHhcCCCC-hhhhhhHhhhhccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence            1110000 00000000 0000000      00000000000   000122467899999999999999999999875

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.8e-33  Score=216.64  Aligned_cols=196  Identities=24%  Similarity=0.349  Sum_probs=157.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||++++++++.+.+..++++|++++++|.+++...     ..+++..+..++.|++.||.+||   +.+++|+||+
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~  126 (254)
T cd06627          55 NLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKF-----GPFPESLVAVYVYQVLQGLAYLH---EQGVIHRDIK  126 (254)
T ss_pred             hCCCCCccEEEEEEEeCCEEEEEEecCCCCcHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCC
Confidence            468999999999999999999999999999999999765     56889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+........ ......++..|+|||...+...+.++|+||+|++++++++|..||......
T Consensus       127 p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~  205 (254)
T cd06627         127 AANILTTKDGVVKLADFGVATKLNDVSK-DDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPM  205 (254)
T ss_pred             HHHEEECCCCCEEEeccccceecCCCcc-cccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHH
Confidence            9999999999999999999876543322 123445788899999988777889999999999999999999887532210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                    . ....... ...+...+..+.+++.+||..+|++|||+.+++.
T Consensus       206 ~~~--------------------~-~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         206 AAL--------------------F-RIVQDDH-PPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             HHH--------------------H-HHhccCC-CCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence            000                    0 0000000 0111234567889999999999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=4.4e-33  Score=226.86  Aligned_cols=217  Identities=17%  Similarity=0.217  Sum_probs=154.0

Q ss_pred             CCCCcccceeeEEEEeC-----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~-----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++|+||+++++++...     ...++|+||+. ++|.+++...     ..++...+..++.|++.||.|||   +.+++
T Consensus        60 ~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH---~~~i~  130 (337)
T cd07858          60 HLDHENVIAIKDIMPPPHREAFNDVYIVYELMD-TDLHQIIRSS-----QTLSDDHCQYFLYQLLRGLKYIH---SANVL  130 (337)
T ss_pred             hcCCCCccchHHheecccccccCcEEEEEeCCC-CCHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH---hCCEe
Confidence            36899999999988644     34789999996 7998888764     56889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+||||+||+++.++.++|+|||++....... .......++..|+|||.+.. ..++.++|+||||+++|+|++|..||
T Consensus       131 H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf  209 (337)
T cd07858         131 HRDLKPSNLLLNANCDLKICDFGLARTTSEKG-DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLF  209 (337)
T ss_pred             cCCCCHHHEEEcCCCCEEECcCccccccCCCc-ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999987653321 11223457888999998865 45889999999999999999999998


Q ss_pred             ccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 044155          155 DLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDV  225 (239)
Q Consensus       155 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~el  225 (239)
                      ...........       +..+. ......................  .......+..+.++|.+||+.+|++|||++++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~el  288 (337)
T cd07858         210 PGKDYVHQLKLITELLGSPSEED-LGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEA  288 (337)
T ss_pred             CCCChHHHHHHHHHHhCCCChHH-hhhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHH
Confidence            64321110000       00000 0000000000000000000000  01112456778999999999999999999999


Q ss_pred             HHH
Q 044155          226 AKK  228 (239)
Q Consensus       226 l~~  228 (239)
                      ++.
T Consensus       289 l~h  291 (337)
T cd07858         289 LAH  291 (337)
T ss_pred             HcC
Confidence            874

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=2.4e-33  Score=213.99  Aligned_cols=223  Identities=18%  Similarity=0.253  Sum_probs=162.7

Q ss_pred             CCCcccceeeEEEEe-CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MSHNHILKLIGCCLE-TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~H~niv~l~~~~~~-~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      |+||||+.+..+|.. ....|+++||.+ -+|..+++-++......++...++.++-||+.|+.|||   +.=|+|||||
T Consensus        84 l~h~nvi~Lv~Vfl~~d~~v~l~fdYAE-hDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH---~NWvlHRDLK  159 (438)
T KOG0666|consen   84 LKHPNVISLVKVFLSHDKKVWLLFDYAE-HDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLH---SNWVLHRDLK  159 (438)
T ss_pred             hcCCcchhHHHHHhccCceEEEEehhhh-hhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHh---hhheeeccCC
Confidence            789999999999987 778999999998 69999998766544467889999999999999999999   8899999999


Q ss_pred             CcceeecCC----CceeEcccccccccCCCCcc--eeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCCC
Q 044155           81 TSCILFNEE----NVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        81 ~~nil~~~~----~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      |.|||+..+    |.+||+|+|+++.+......  .......|++|+|||.+.+.. |+.+.|+|++|||+.||++-.+.
T Consensus       160 PaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~Pl  239 (438)
T KOG0666|consen  160 PANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPL  239 (438)
T ss_pred             cceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCcc
Confidence            999999988    89999999999887543221  123456799999999999876 88899999999999999998877


Q ss_pred             cccccccccccccc-hhhhhhhh------hccchhh---------hhhhhhhcCCCcH-HH------HHHHHHHHHHHhh
Q 044155          154 SDLVKDVHDLVCPF-SEYLKNCF------EDNRFTE---------IVDHIVVEDVSSI-EK------EQQLHASAQVTFE  210 (239)
Q Consensus       154 ~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~---------~~~~~~~~~~~~~-~~------~~~~~~~~~li~~  210 (239)
                      |.....--....|| ...+...+      .+.+|++         .+.......+... ..      ..-++...+|+..
T Consensus       240 F~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~k  319 (438)
T KOG0666|consen  240 FKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQK  319 (438)
T ss_pred             ccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHH
Confidence            76543322111121 11111111      1112221         1111111111110 00      0123446799999


Q ss_pred             hcCCCCCCCCCHHHHHHH
Q 044155          211 CIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       211 cl~~dp~~Rps~~ell~~  228 (239)
                      +|++||.+|.|+++.++.
T Consensus       320 lL~yDP~kRIta~qAleh  337 (438)
T KOG0666|consen  320 LLTYDPIKRITAEQALEH  337 (438)
T ss_pred             HhccCchhhccHHHHhcc
Confidence            999999999999998873

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=3.7e-33  Score=227.18  Aligned_cols=216  Identities=18%  Similarity=0.215  Sum_probs=150.5

Q ss_pred             CCCCcccceeeEEEEeCC-----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLETP-----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~-----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++....     ..++++||+. ++|.+.+..      ..+++..+..++.|++.||.+||   +.+++
T Consensus        59 ~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~------~~l~~~~~~~i~~ql~~aL~~LH---~~~iv  128 (336)
T cd07849          59 RFKHENIIGILDIIRPPSFESFNDVYIVQELME-TDLYKLIKT------QHLSNDHIQYFLYQILRGLKYIH---SANVL  128 (336)
T ss_pred             hCCCCCcCchhheeecccccccceEEEEehhcc-cCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---hCCee
Confidence            478999999999876443     4689999997 688887754      46889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCC
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      |+||||+||+++.++.++|+|||++.........  ......++..|+|||.+.+ ..++.++|+||||+++|+|++|+.
T Consensus       129 H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~  208 (336)
T cd07849         129 HRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRP  208 (336)
T ss_pred             ccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998654322111  1123457888999998754 458899999999999999999999


Q ss_pred             Ccccccccccccccchhhhhhhhhccchhhhhhhh-------h-hcCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHI-------V-VEDVSSI--EKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                      ||........... .......+ ............       . .......  .....+..+.+++.+||+.||++|||+
T Consensus       209 ~f~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~  286 (336)
T cd07849         209 LFPGKDYLHQLNL-ILGVLGTP-SQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITV  286 (336)
T ss_pred             CCCCCCHHHHHHH-HHHHcCCC-CHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCH
Confidence            9854221100000 00000000 000000000000       0 0000000  011335678999999999999999999


Q ss_pred             HHHHHH
Q 044155          223 VDVAKK  228 (239)
Q Consensus       223 ~ell~~  228 (239)
                      .|+++.
T Consensus       287 ~e~l~h  292 (336)
T cd07849         287 EEALAH  292 (336)
T ss_pred             HHHhcC
Confidence            999873

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=6.1e-33  Score=225.36  Aligned_cols=218  Identities=19%  Similarity=0.204  Sum_probs=157.5

Q ss_pred             CCCCcccceeeEEEEeCC-----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLETP-----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~-----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++....     ..+++|||+. ++|.+++...     ..+++..+..++.|++.||++||   +.+++
T Consensus        55 ~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~-----~~l~~~~~~~i~~~l~~~l~~LH---~~gi~  125 (330)
T cd07834          55 HLRHENIIGLLDILRPPSPEDFNDVYIVTELME-TDLHKVIKSP-----QPLTDDHIQYFLYQILRGLKYLH---SANVI  125 (330)
T ss_pred             hcCCcchhhhhhhhcccCcccccceEEEecchh-hhHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHH---hCCee
Confidence            468999999999988765     6799999997 6899988765     46889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCC
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      |+||||+||+++.++.++|+|||.+........  .......++..|+|||.+.+. .++.++|+||||+++|+|++|..
T Consensus       126 H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~  205 (330)
T cd07834         126 HRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKP  205 (330)
T ss_pred             cCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999876543321  122344578889999999887 78999999999999999999999


Q ss_pred             Ccccccccccccc------cchhhhhhhhhccchhhhhhhhhhcCCCc--HHHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 044155          153 VSDLVKDVHDLVC------PFSEYLKNCFEDNRFTEIVDHIVVEDVSS--IEKEQQLHASAQVTFECIKDSPADRPSMVD  224 (239)
Q Consensus       153 p~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~e  224 (239)
                      ||...........      ................+.+..........  ......+..+.+++.+||+.+|.+|||+++
T Consensus       206 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~  285 (330)
T cd07834         206 LFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADE  285 (330)
T ss_pred             CcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHH
Confidence            9865442111000      00000000000000011111000000000  011134677899999999999999999999


Q ss_pred             HHH
Q 044155          225 VAK  227 (239)
Q Consensus       225 ll~  227 (239)
                      ++.
T Consensus       286 ll~  288 (330)
T cd07834         286 ALA  288 (330)
T ss_pred             HHh
Confidence            997

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=4.8e-33  Score=223.94  Aligned_cols=219  Identities=15%  Similarity=0.180  Sum_probs=149.9

Q ss_pred             CCCCcccceeeEEEEeCC--------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC
Q 044155            1 QMSHNHILKLIGCCLETP--------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR   72 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~--------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~   72 (239)
                      +++||||+++++++.+..        ..++|+||+. +++...+....    ..++...+..++.|++.||.|||   ..
T Consensus        63 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~-~~l~~~~~~~~----~~~~~~~~~~i~~~l~~al~~lH---~~  134 (311)
T cd07866          63 KLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMD-HDLSGLLENPS----VKLTESQIKCYMLQLLEGINYLH---EN  134 (311)
T ss_pred             hcCCCCccchhhheecccccccccCceEEEEEecCC-cCHHHHHhccc----cCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            478999999999876543        3589999997 67877776532    46899999999999999999999   89


Q ss_pred             CeeeccccCcceeecCCCceeEcccccccccCCCCcc----------eeecccccccccCccccccC-Ccccccchhhhh
Q 044155           73 PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH----------ITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFS  141 (239)
Q Consensus        73 ~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~----------~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG  141 (239)
                      +++|+||||+||+++.++.++|+|||++.........          ......+++.|+|||.+.+. .++.++|+||||
T Consensus       135 ~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG  214 (311)
T cd07866         135 HILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIG  214 (311)
T ss_pred             CeecCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHH
Confidence            9999999999999999999999999988654322110          11223467789999987654 478899999999


Q ss_pred             hHHHHHhcCCCCcccccccccccccchhhhhhhhhccc----hhhhhhhhhhcCCCcHH---HHHHHHHHHHHHhhhcCC
Q 044155          142 VFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR----FTEIVDHIVVEDVSSIE---KEQQLHASAQVTFECIKD  214 (239)
Q Consensus       142 ~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~cl~~  214 (239)
                      +++|+|++|+.||............+............    .................   .......+.+++.+||..
T Consensus       215 ~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  294 (311)
T cd07866         215 CVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSL  294 (311)
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHccc
Confidence            99999999999986433321111100000000000000    00000000000000000   012336688999999999


Q ss_pred             CCCCCCCHHHHHH
Q 044155          215 SPADRPSMVDVAK  227 (239)
Q Consensus       215 dp~~Rps~~ell~  227 (239)
                      ||.+|||+.|++.
T Consensus       295 ~p~~R~t~~ell~  307 (311)
T cd07866         295 DPYKRLTASDALE  307 (311)
T ss_pred             CcccCcCHHHHhc
Confidence            9999999999875

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=1.9e-33  Score=222.93  Aligned_cols=195  Identities=20%  Similarity=0.261  Sum_probs=155.8

Q ss_pred             CC-CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MS-HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~-H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++ ||||+++++++......++|||++++++|.+++.+.     ..+++..+..++.|++.||.+||   +.+++|+|++
T Consensus        58 l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~l~~~~~~~i~~ql~~~l~~Lh---~~~~~H~dl~  129 (280)
T cd05581          58 LNGHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKY-----GSLDEKCTRFYAAEILLALEYLH---SKGIIHRDLK  129 (280)
T ss_pred             cccCCCchhHHHHhcCCceEEEEEcCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCC
Confidence            55 999999999999999999999999999999999865     46899999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-------------------ceeecccccccccCccccccCCcccccchhhhh
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-------------------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFS  141 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  141 (239)
                      |+||+++.++.++++|||++........                   .......++..|+|||.......+.++|+||||
T Consensus       130 ~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG  209 (280)
T cd05581         130 PENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALG  209 (280)
T ss_pred             HHHeEECCCCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHH
Confidence            9999999999999999998865532211                   122344577889999999888889999999999


Q ss_pred             hHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 044155          142 VFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS  221 (239)
Q Consensus       142 ~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps  221 (239)
                      ++++++++|..||......                     ...........  ..+...+..+.+++.+||+.+|.+|||
T Consensus       210 ~~l~~l~~g~~p~~~~~~~---------------------~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~R~~  266 (280)
T cd05581         210 CIIYQMLTGKPPFRGSNEY---------------------LTFQKILKLEY--SFPPNFPPDAKDLIEKLLVLDPQDRLG  266 (280)
T ss_pred             HHHHHHHhCCCCCCCccHH---------------------HHHHHHHhcCC--CCCCccCHHHHHHHHHHhcCCHhhCCC
Confidence            9999999999988643210                     00001111000  011133567889999999999999999


Q ss_pred             H----HHHHH
Q 044155          222 M----VDVAK  227 (239)
Q Consensus       222 ~----~ell~  227 (239)
                      +    ++++.
T Consensus       267 ~~~~~~~ll~  276 (280)
T cd05581         267 VNEGYDELKA  276 (280)
T ss_pred             cccCHHHHhc
Confidence            9    77664

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.4e-33  Score=217.39  Aligned_cols=192  Identities=25%  Similarity=0.318  Sum_probs=153.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++.+..+...++|||++++++|.+++...     ..+++.....++.|++.|+.|||   +.+++|+||+
T Consensus        49 ~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~qi~~~l~~lh---~~~~~H~~l~  120 (250)
T cd05123          49 RINHPFIVKLHYAFQTEEKLYLVLEYAPGGELFSHLSKE-----GRFSEERARFYAAEIVLALEYLH---SLGIIYRDLK  120 (250)
T ss_pred             HcCCCcHHHHHHHeecCCeeEEEEecCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCC
Confidence            468999999999999999999999999999999999765     46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+....... .......++..|+|||...+...+.++|+||||+++|++++|..||..... 
T Consensus       121 p~ni~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~-  198 (250)
T cd05123         121 PENILLDADGHIKLTDFGLAKELSSEG-SRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR-  198 (250)
T ss_pred             cceEEEcCCCcEEEeecCcceecccCC-CcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-
Confidence            999999999999999999886653321 122344578889999999888889999999999999999999988753221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD  224 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~e  224 (239)
                                          ............  ..+...+..+.+++.+||..||.+|||+.+
T Consensus       199 --------------------~~~~~~~~~~~~--~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         199 --------------------KEIYEKILKDPL--RFPEFLSPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             --------------------HHHHHHHhcCCC--CCCCCCCHHHHHHHHHHhcCCHhhCCCccc
Confidence                                011111111110  111123567889999999999999999943

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=1.6e-32  Score=223.45  Aligned_cols=216  Identities=19%  Similarity=0.203  Sum_probs=154.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..+...++||||+. ++|.+++...     ..++......++.|++.||.|||   +.+++|+||+
T Consensus        76 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~-----~~~~~~~~~~~~~ql~~aL~~LH---~~~i~H~dl~  146 (335)
T PTZ00024         76 EIKHENIMGLVDVYVEGDFINLVMDIMA-SDLKKVVDRK-----IRLTESQVKCILLQILNGLNVLH---KWYFMHRDLS  146 (335)
T ss_pred             hCCCcceeeeeEEEecCCcEEEEEeccc-cCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccc
Confidence            4789999999999999999999999997 7999998764     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC-------------cceeecccccccccCccccccC-CcccccchhhhhhHHHH
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE-------------THITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFE  146 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~-------------~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~  146 (239)
                      |+||+++.++.++|+|||.+.......             ........++..|+|||.+.+. .++.++|+||||+++|+
T Consensus       147 ~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~e  226 (335)
T PTZ00024        147 PANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAE  226 (335)
T ss_pred             HHHeEECCCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHH
Confidence            999999999999999999886543110             1111223457789999988764 46889999999999999


Q ss_pred             HhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhh----hhcCCCc---HHHHHHHHHHHHHHhhhcCCCCCCC
Q 044155          147 LLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHI----VVEDVSS---IEKEQQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       147 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~li~~cl~~dp~~R  219 (239)
                      |++|..||....+....... ......+. ...+.......    .......   ......+..+.+++.+||+.+|++|
T Consensus       227 l~tg~~p~~~~~~~~~~~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  304 (335)
T PTZ00024        227 LLTGKPLFPGENEIDQLGRI-FELLGTPN-EDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLER  304 (335)
T ss_pred             HHhCCCCCCCCCHHHHHHHH-HHHhCCCc-hhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhc
Confidence            99999998654322111000 00000000 00000000000    0000000   0011235678899999999999999


Q ss_pred             CCHHHHHH
Q 044155          220 PSMVDVAK  227 (239)
Q Consensus       220 ps~~ell~  227 (239)
                      ||++|++.
T Consensus       305 ~s~~~~l~  312 (335)
T PTZ00024        305 ISAKEALK  312 (335)
T ss_pred             cCHHHHhc
Confidence            99999986

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-32  Score=234.13  Aligned_cols=197  Identities=20%  Similarity=0.244  Sum_probs=161.5

Q ss_pred             CCcccceeeEEEEe-----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeec
Q 044155            3 SHNHILKLIGCCLE-----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFR   77 (239)
Q Consensus         3 ~H~niv~l~~~~~~-----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~   77 (239)
                      .|||++.+||++.-     ++.+|+|||||.+||..|+++...+   .++.+..+..|+..++.|+.+||   ...++||
T Consensus        74 ~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g---~rl~E~~IaYI~re~lrgl~HLH---~nkviHR  147 (953)
T KOG0587|consen   74 HHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKG---NRLKEEWIAYILREILRGLAHLH---NNKVIHR  147 (953)
T ss_pred             CCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHHhhhcc---cchhhHHHHHHHHHHHHHHHHHh---hcceeee
Confidence            79999999999873     4578999999999999999998764   78999999999999999999999   9999999


Q ss_pred             cccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC-----cccccchhhhhhHHHHHhcCCC
Q 044155           78 NFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-----FNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        78 dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      |+|-.|||++.++.+|++|||.+.... +......+..||+.|||||++....     |+..+|+||||++..||..|.+
T Consensus       148 DikG~NiLLT~e~~VKLvDFGvSaQld-sT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~P  226 (953)
T KOG0587|consen  148 DIKGQNVLLTENAEVKLVDFGVSAQLD-STVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAP  226 (953)
T ss_pred             cccCceEEEeccCcEEEeeeeeeeeee-cccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCC
Confidence            999999999999999999999987763 3334566788999999999986533     7788999999999999999988


Q ss_pred             Ccccccccccccccchhhhhhhhhccchhhhhhhhhh-cCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVV-EDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      |+--+-                     .....-.+.. .+.....+..++.++-++|+.||..|-.+||+..++++
T Consensus       227 Pl~DmH---------------------PmraLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  227 PLCDMH---------------------PMRALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             CccCcc---------------------hhhhhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence            853211                     1111111111 11122234588899999999999999999999999875

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-32  Score=219.62  Aligned_cols=193  Identities=22%  Similarity=0.322  Sum_probs=158.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++.+.||.+--.|++....|+|+..|.||+|.=.|.+.+.   ..+++..+.-++.+|+.||.+||   ..+||.||+||
T Consensus       242 V~s~FiVslaYAfeTkd~LClVLtlMNGGDLkfHiyn~g~---~gF~e~ra~FYAAEi~cGLehlH---~~~iVYRDLKP  315 (591)
T KOG0986|consen  242 VSSPFIVSLAYAFETKDALCLVLTLMNGGDLKFHIYNHGN---PGFDEQRARFYAAEIICGLEHLH---RRRIVYRDLKP  315 (591)
T ss_pred             hccCcEEEEeeeecCCCceEEEEEeecCCceeEEeeccCC---CCCchHHHHHHHHHHHhhHHHHH---hcceeeccCCh
Confidence            5678899998788899999999999999999887766543   56899999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +|||+|+.|.++|+|.|++...+.+..  .....||.+|||||++....|+...|-|||||++|||+.|+.||..     
T Consensus       316 eNILLDd~GhvRISDLGLAvei~~g~~--~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~-----  388 (591)
T KOG0986|consen  316 ENILLDDHGHVRISDLGLAVEIPEGKP--IRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQ-----  388 (591)
T ss_pred             hheeeccCCCeEeeccceEEecCCCCc--cccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhh-----
Confidence            999999999999999999988766543  3455899999999999999999999999999999999999888732     


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS  221 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps  221 (239)
                                  .....++.++-+..+....  ..++..+++.+++.+..|..||++|.-
T Consensus       389 ------------~KeKvk~eEvdrr~~~~~~--ey~~kFS~eakslc~~LL~Kdp~~RLG  434 (591)
T KOG0986|consen  389 ------------RKEKVKREEVDRRTLEDPE--EYSDKFSEEAKSLCEGLLTKDPEKRLG  434 (591)
T ss_pred             ------------hhhhhhHHHHHHHHhcchh--hcccccCHHHHHHHHHHHccCHHHhcc
Confidence                        1222222233222222222  223578889999999999999999973

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=3.7e-32  Score=220.57  Aligned_cols=212  Identities=19%  Similarity=0.243  Sum_probs=150.3

Q ss_pred             CCCCcccceeeEEEEe-CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCLE-TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~-~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++||||+++++++.. +...++++||+. ++|.++++.      ..++......++.|++.||.|||   ..+++|+||
T Consensus        65 ~l~hpniv~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~------~~~~~~~~~~~~~ql~~aL~~LH---~~~iiH~dl  134 (328)
T cd07856          65 HLRHENIISLSDIFISPLEDIYFVTELLG-TDLHRLLTS------RPLEKQFIQYFLYQILRGLKYVH---SAGVVHRDL  134 (328)
T ss_pred             hcCCCCeeeEeeeEecCCCcEEEEeehhc-cCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCC
Confidence            4789999999999875 457789999995 799888864      35778888889999999999999   899999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      +|+||+++.++.++|+|||.+......    .....++..|+|||.+.+ ..++.++|+||||+++|++++|..||....
T Consensus       135 ~p~Nili~~~~~~~l~dfg~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~  210 (328)
T cd07856         135 KPSNILINENCDLKICDFGLARIQDPQ----MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKD  210 (328)
T ss_pred             CHHHEeECCCCCEEeCccccccccCCC----cCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999988654221    123456788999998866 568899999999999999999999885432


Q ss_pred             ccccc------c-ccchhhhhhhhhccchhhhhhhhhhcCCCcHH--HHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDL------V-CPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIE--KEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .....      . .+..++... .......+...........+..  ....+..+.++|.+||+.+|++|||+++++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~  287 (328)
T cd07856         211 HVNQFSIITDLLGTPPDDVINT-ICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALA  287 (328)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHh-ccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            11000      0 000000000 0000001111110000000000  0124577899999999999999999999876

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-32  Score=218.78  Aligned_cols=216  Identities=22%  Similarity=0.257  Sum_probs=155.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++.+....++|+|+++ ++|.+++....    ..++...+..++.|++.||.+||   +.+++|+||+
T Consensus        54 ~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~i~~~~----~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~~l~  125 (282)
T cd07829          54 ELKHPNIVKLLDVIHTERKLYLVFEYCD-MDLKKYLDKRP----GPLSPNLIKSIMYQLLRGLAYCH---SHRILHRDLK  125 (282)
T ss_pred             hcCCCCHHHHHhhhhcCCceEEEecCcC-cCHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            3689999999999999999999999997 69999998653    36889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||++++++.++|+|||.+........ ......++..|+|||.+.+. .++.++|+||||++++++++|..||.....
T Consensus       126 ~~ni~~~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~  204 (282)
T cd07829         126 PQNILINRDGVLKLADFGLARAFGIPLR-TYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSE  204 (282)
T ss_pred             hheEEEcCCCCEEEecCCcccccCCCcc-ccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccH
Confidence            9999999999999999998866533221 12223456789999998766 788999999999999999999988865432


Q ss_pred             cccccccchhhhhhhhhccchhhhh-----hhhhhcCCCc---HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIV-----DHIVVEDVSS---IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......... ....+. ...+....     ..........   ......+..+.+++.+||..||++||++++++.
T Consensus       205 ~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         205 IDQLFKIFQ-ILGTPT-EESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             HHHHHHHHH-HhCCCc-HHHHHhhcccccccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence            111100000 000000 00000000     0000000000   000123567899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.98  E-value=6.3e-32  Score=219.63  Aligned_cols=215  Identities=20%  Similarity=0.208  Sum_probs=149.9

Q ss_pred             CCcccceeeEEEEeC----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            3 SHNHILKLIGCCLET----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         3 ~H~niv~l~~~~~~~----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +||||+++++.+...    ...+++++++. ++|.+.+...     ..++...++.++.|++.||.|||   +.+++|+|
T Consensus        60 ~h~~iv~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~givH~d  130 (332)
T cd07857          60 GHKNITCLYDMDIVFPGNFNELYLYEELME-ADLHQIIRSG-----QPLTDAHFQSFIYQILCGLKYIH---SANVLHRD  130 (332)
T ss_pred             CCCChheeeeeeeeccccCCcEEEEEeccc-CCHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCC
Confidence            599999999876532    34678888886 7999988754     56889999999999999999999   99999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcc---eeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETH---ITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |||+||+++.++.++|+|||.+.........   ......|+..|+|||...+ ..++.++||||||+++|++++|..||
T Consensus       131 lkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf  210 (332)
T cd07857         131 LKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVF  210 (332)
T ss_pred             CCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCC
Confidence            9999999999999999999998765332211   1223467889999998765 46889999999999999999999988


Q ss_pred             cccccccccc-------ccchhhhhhhhhccchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 044155          155 DLVKDVHDLV-------CPFSEYLKNCFEDNRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKDSPADRPSMVDV  225 (239)
Q Consensus       155 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~~el  225 (239)
                      ..........       .+..+...... ...................  .....+..+.+++.+||+.||.+|||+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~l  289 (332)
T cd07857         211 KGKDYVDQLNQILQVLGTPDEETLSRIG-SPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEA  289 (332)
T ss_pred             CCCCHHHHHHHHHHHhCCCCHHHHHhhh-hhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHH
Confidence            6433211000       00000000000 0000000000000000000  001235678899999999999999999998


Q ss_pred             HH
Q 044155          226 AK  227 (239)
Q Consensus       226 l~  227 (239)
                      +.
T Consensus       290 l~  291 (332)
T cd07857         290 LE  291 (332)
T ss_pred             hc
Confidence            76

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.98  E-value=3.9e-32  Score=221.78  Aligned_cols=211  Identities=17%  Similarity=0.204  Sum_probs=150.3

Q ss_pred             CCCCcccceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++....      ..++|||++ +++|.+++..      ..+++..+..++.|++.||.|||   +.++
T Consensus        70 ~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~------~~l~~~~~~~i~~qi~~al~~LH---~~gi  139 (343)
T cd07880          70 HMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMKH------EKLSEDRIQFLVYQMLKGLKYIH---AAGI  139 (343)
T ss_pred             hcCCCCccceeeeecCCccccccceEEEEEecC-CCCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---hCCe
Confidence            478999999999987553      348999999 6899888864      45889999999999999999999   8999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCC
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      +|+||||+||+++.++.++++|||++......    .....+++.|+|||.+.+ ..++.++|+||||+++|++++|..|
T Consensus       140 ~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~p  215 (343)
T cd07880         140 IHRDLKPGNLAVNEDCELKILDFGLARQTDSE----MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPL  215 (343)
T ss_pred             ecCCCCHHHEEEcCCCCEEEeecccccccccC----ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999998654322    223456788999998876 4578899999999999999999999


Q ss_pred             cccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCCCc---HHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          154 SDLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVSS---IEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       154 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      |...........       ....+.... ............ ......   ......+..+.+++.+|+..||++|||+.
T Consensus       216 f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~  293 (343)
T cd07880         216 FKGHDHLDQLMEIMKVTGTPSKEFVQKL-QSEDAKNYVKKL-PRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAA  293 (343)
T ss_pred             CCCCCHHHHHHHHHHhcCCCCHHHHHhh-cchhHHHHHHhc-cccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHH
Confidence            864332111000       000000000 000000000000 000000   00113456688999999999999999999


Q ss_pred             HHHH
Q 044155          224 DVAK  227 (239)
Q Consensus       224 ell~  227 (239)
                      +++.
T Consensus       294 ~~l~  297 (343)
T cd07880         294 EALA  297 (343)
T ss_pred             HHhc
Confidence            9984

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=2.4e-32  Score=216.95  Aligned_cols=225  Identities=20%  Similarity=0.305  Sum_probs=166.1

Q ss_pred             CCCCcccceeeEEEEeCC----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHh-----hCCC
Q 044155            1 QMSHNHILKLIGCCLETP----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLH-----FGFP   71 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH-----~~~~   71 (239)
                      .|+|+||+.+++.-..++    ..|+|++|-+.|||.|++.+      ..++....++++..++.||++||     ....
T Consensus       261 mLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r------~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgK  334 (513)
T KOG2052|consen  261 MLRHENILGFIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNR------NTVTTEGMLKLALSIASGLAHLHMEIVGTQGK  334 (513)
T ss_pred             HhccchhhhhhhccccCCCceEEEEEeeecccCCcHHHHHhh------ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCC
Confidence            379999999988755333    46899999999999999987      56889999999999999999999     2236


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCC---cceeecccccccccCccccccCC------cccccchhhhhh
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE---THITDTVMGTLGYCAPEYMRTGV------FNEKSNVFSFSV  142 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG~  142 (239)
                      ..|.|||||+.|||+.+++.+-|+|+|++.......   .-......||.+|||||++....      .-..+||||||+
T Consensus       335 PaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgL  414 (513)
T KOG2052|consen  335 PAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGL  414 (513)
T ss_pred             chhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHH
Confidence            679999999999999999999999999987654321   23456778999999999996543      124699999999


Q ss_pred             HHHHHhcCCCCcccccccccccccchhhhhhhhhccchhh--hhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 044155          143 FLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTE--IVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP  220 (239)
Q Consensus       143 ~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp  220 (239)
                      ++||+..+...-   .-..+...|+..+......-+.+.+  .+++......+.....+....+.++|..||..+|..|.
T Consensus       415 VlWEiarRc~~g---gi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRl  491 (513)
T KOG2052|consen  415 VLWEIARRCESG---GIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARL  491 (513)
T ss_pred             HHHHHHHHhhcC---CEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhh
Confidence            999997753221   1122334444444433222211111  22222222222333456778899999999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 044155          221 SMVDVAKKLRQIYR  234 (239)
Q Consensus       221 s~~ell~~L~~l~~  234 (239)
                      ||-.+...|.++.+
T Consensus       492 tALriKKtl~~l~~  505 (513)
T KOG2052|consen  492 TALRIKKTLAKLSN  505 (513)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998874

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.98  E-value=8.7e-32  Score=211.13  Aligned_cols=211  Identities=18%  Similarity=0.272  Sum_probs=173.1

Q ss_pred             CCCcccceeeEEEEeC-CCceEEEEEccCCChhhhhhcCCC---CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeec
Q 044155            2 MSHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQ---PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFR   77 (239)
Q Consensus         2 l~H~niv~l~~~~~~~-~~~~iv~e~~~~~sL~~~l~~~~~---~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~   77 (239)
                      +.|||+.++.+++.+. ...++++.+..-|+|..++...++   .+.+.++..+...++.|++.|++|||   .++++|.
T Consensus       344 ~sH~nll~V~~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh---~~~ViHk  420 (563)
T KOG1024|consen  344 ASHPNLLSVLGVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLH---NHGVIHK  420 (563)
T ss_pred             CcCCCccceeEEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHH---hcCcccc
Confidence            5799999999998754 467888999988999999983322   12255667778889999999999999   9999999


Q ss_pred             cccCcceeecCCCceeEcccccccccCCCCcceee-cccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcc
Q 044155           78 NFKTSCILFNEENVAKLFDFSLSISIPEGETHITD-TVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSD  155 (239)
Q Consensus        78 dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~-~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~  155 (239)
                      ||..+|++|++.-++||+|=.+++.+.+...++.+ ..-.+..||+||.+....++..+|+||||+++||++| |+.|+.
T Consensus       421 DiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~Pya  500 (563)
T KOG1024|consen  421 DIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYA  500 (563)
T ss_pred             hhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCcc
Confidence            99999999999999999999999877666655433 3446889999999999999999999999999999988 667765


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ..+                      +.-+...++..++...+-++++++..+|--||..+|++|||++|+..-|.++..+
T Consensus       501 eID----------------------PfEm~~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~~q  558 (563)
T KOG1024|consen  501 EID----------------------PFEMEHYLKDGYRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVICLSEFHTQ  558 (563)
T ss_pred             ccC----------------------HHHHHHHHhccceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHH
Confidence            433                      1222233444455555568889999999999999999999999999999999887


Q ss_pred             hc
Q 044155          236 LS  237 (239)
Q Consensus       236 ~~  237 (239)
                      ++
T Consensus       559 lt  560 (563)
T KOG1024|consen  559 LT  560 (563)
T ss_pred             Hh
Confidence            65

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.97  E-value=5.7e-32  Score=220.95  Aligned_cols=211  Identities=19%  Similarity=0.217  Sum_probs=148.1

Q ss_pred             CCCCcccceeeEEEEeC------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++...      ...+++++++ +++|.+.+..      ..+++..+..++.|++.||+|||   +.++
T Consensus        72 ~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~------~~l~~~~~~~i~~qi~~aL~~LH---~~~i  141 (345)
T cd07877          72 HMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC------QKLTDDHVQFLIYQILRGLKYIH---SADI  141 (345)
T ss_pred             HcCCCcccceeeeeeecccccccccEEEEehhc-ccCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCe
Confidence            47899999999988643      3357788877 6899887764      35788999999999999999999   8999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCC
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      +|+||||+||+++.++.++|+|||++......    .....++..|+|||.+.+ ..++.++|+||||+++|+|++|..|
T Consensus       142 vH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~p  217 (345)
T cd07877         142 IHRDLKPSNLAVNEDCELKILDFGLARHTDDE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTL  217 (345)
T ss_pred             eecCCChHHEEEcCCCCEEEeccccccccccc----ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999998654322    223457888999998866 4678899999999999999999999


Q ss_pred             cccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCCCcHHH---HHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          154 SDLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEK---EQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       154 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      |...........       +....... ...... ................   ...+..+.++|.+|++.||.+|||+.
T Consensus       218 f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~  295 (345)
T cd07877         218 FPGTDHIDQLKLILRLVGTPGAELLKK-ISSESA-RNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA  295 (345)
T ss_pred             CCCCCHHHHHHHHHHHhCCCCHHHHhh-cccHhH-HHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHH
Confidence            854322111000       00000000 000000 0000000000000000   12356788999999999999999999


Q ss_pred             HHHH
Q 044155          224 DVAK  227 (239)
Q Consensus       224 ell~  227 (239)
                      ++++
T Consensus       296 e~l~  299 (345)
T cd07877         296 QALA  299 (345)
T ss_pred             HHhc
Confidence            9886

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.97  E-value=3.1e-32  Score=222.34  Aligned_cols=212  Identities=20%  Similarity=0.250  Sum_probs=151.5

Q ss_pred             CCCCcccceeeEEEEeCCC------ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETPI------PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~------~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++.....      .++|+||+ +++|.+++..      ..+++..+..++.|++.||.|||   +.++
T Consensus        70 ~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~------~~l~~~~~~~~~~ql~~aL~~LH---~~gi  139 (343)
T cd07851          70 HMDHENVIGLLDVFTPASSLEDFQDVYLVTHLM-GADLNNIVKC------QKLSDDHIQFLVYQILRGLKYIH---SAGI  139 (343)
T ss_pred             hccCCCHHHHHHHhhccccccccccEEEEEecC-CCCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCe
Confidence            4689999999988765544      78999999 5899998865      45889999999999999999999   8999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCC
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      +|+||||+||+++.++.++|+|||++......    .....++..|+|||.+.+ ..++.++|+||||+++|++++|..|
T Consensus       140 ~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~p  215 (343)
T cd07851         140 IHRDLKPSNIAVNEDCELKILDFGLARHTDDE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTL  215 (343)
T ss_pred             ecCCCCHHHeEECCCCCEEEcccccccccccc----ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999998665332    223456788999998865 3678899999999999999999999


Q ss_pred             cccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 044155          154 SDLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKDSPADRPSMVD  224 (239)
Q Consensus       154 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~~e  224 (239)
                      |...........       +...+... .....................  .....+..+.+++.+||..||.+|||+.+
T Consensus       216 f~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~e  294 (343)
T cd07851         216 FPGSDHIDQLKRIMNLVGTPDEELLQK-ISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAE  294 (343)
T ss_pred             CCCCChHHHHHHHHHhcCCCCHHHHhh-ccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHH
Confidence            864322111000       00000000 000000000000000000000  11123678899999999999999999999


Q ss_pred             HHH
Q 044155          225 VAK  227 (239)
Q Consensus       225 ll~  227 (239)
                      |++
T Consensus       295 ll~  297 (343)
T cd07851         295 ALA  297 (343)
T ss_pred             Hhc
Confidence            976

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.97  E-value=5.3e-32  Score=220.91  Aligned_cols=210  Identities=18%  Similarity=0.241  Sum_probs=147.2

Q ss_pred             CCCCcccceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++....      ..++|+||+. .+|.+...       ..++...+..++.|++.||+|||   ..++
T Consensus        70 ~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~~~~qi~~aL~~LH---~~~i  138 (342)
T cd07879          70 HMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQ-TDLQKIMG-------HPLSEDKVQYLVYQMLCGLKYIH---SAGI  138 (342)
T ss_pred             hcCCCCccchhheecccccCCCCceEEEEecccc-cCHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHH---HCCc
Confidence            478999999999987543      3589999996 57766552       35788999999999999999999   8999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCC
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      +|+||||+||+++.++.++|+|||++......    .....++..|+|||.+.+ ..++.++|+||||+++|+|++|+.|
T Consensus       139 ~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~p  214 (342)
T cd07879         139 IHRDLKPGNLAVNEDCELKILDFGLARHADAE----MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTL  214 (342)
T ss_pred             ccCCCCHHHEEECCCCCEEEeeCCCCcCCCCC----CCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999998654322    123456788999999876 4588899999999999999999999


Q ss_pred             ccccccccccc-------ccchhhhhhhhhccchhhhhhhhhhcCCCc---HHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          154 SDLVKDVHDLV-------CPFSEYLKNCFEDNRFTEIVDHIVVEDVSS---IEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       154 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      |..........       .+...+.... ........... .......   ......+..+.++|.+||+.||.+|||++
T Consensus       215 f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~  292 (342)
T cd07879         215 FKGKDYLDQLTQILKVTGVPGPEFVQKL-EDKAAKSYIKS-LPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTAT  292 (342)
T ss_pred             CCCCCHHHHHHHHHHhcCCCCHHHHHHh-cccchHHHHhh-cCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            87432111000       0000000000 00000000000 0000000   00112346688999999999999999999


Q ss_pred             HHHH
Q 044155          224 DVAK  227 (239)
Q Consensus       224 ell~  227 (239)
                      +++.
T Consensus       293 e~l~  296 (342)
T cd07879         293 EALE  296 (342)
T ss_pred             HHhc
Confidence            9984

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.97  E-value=2.4e-34  Score=215.11  Aligned_cols=200  Identities=22%  Similarity=0.248  Sum_probs=154.0

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +-||||++||.+..++..||-||+|+ .||..+.+.-......++++...-.+.-....||.||-.  +..|+|||+||+
T Consensus       121 ~cp~IVkfyGa~F~EGdcWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~--~lkiIHRDvKPS  197 (361)
T KOG1006|consen  121 NCPNIVKFYGALFSEGDCWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKE--ELKIIHRDVKPS  197 (361)
T ss_pred             CCcHHHHHhhhhhcCCceeeeHHHHh-hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHH--HhhhhhccCChh
Confidence            45899999999999999999999997 888655443221122678888888888888999999997  789999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC--CcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG--VFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |||++..|.+||+|||++-.+..+..  .+.-.|..+|+|||.+...  .+..+||+||||++++|+.||..|+..-.+ 
T Consensus       198 NILldr~G~vKLCDFGIcGqLv~SiA--kT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s-  274 (361)
T KOG1006|consen  198 NILLDRHGDVKLCDFGICGQLVDSIA--KTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS-  274 (361)
T ss_pred             heEEecCCCEeeecccchHhHHHHHH--hhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH-
Confidence            99999999999999999866543321  2344588899999998653  489999999999999999999999753221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcH----HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSI----EKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                         ..+.+..+..++....    ..-..+..+..+|..|+..|.++||+..+++.
T Consensus       275 -------------------vfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  275 -------------------VFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             -------------------HHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence                               1222223333332211    11246788999999999999999999999876

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.97  E-value=2.1e-32  Score=223.33  Aligned_cols=216  Identities=16%  Similarity=0.205  Sum_probs=147.7

Q ss_pred             CCCCcccceeeEEEEeC--------------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHH
Q 044155            1 QMSHNHILKLIGCCLET--------------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYL   66 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--------------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~L   66 (239)
                      +++||||+++++++...              ...++|+||++ ++|.+++..      ..++...+..++.|++.||.||
T Consensus        58 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~------~~l~~~~~~~~~~qi~~aL~~L  130 (342)
T cd07854          58 RLDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYME-TDLANVLEQ------GPLSEEHARLFMYQLLRGLKYI  130 (342)
T ss_pred             hcCCCcchhhHhhhcccccccccccccccccceEEEEeeccc-ccHHHHHHc------CCCCHHHHHHHHHHHHHHHHHH
Confidence            47899999999876643              24689999997 699888854      4578899999999999999999


Q ss_pred             hhCCCCCeeeccccCcceeecC-CCceeEcccccccccCCCCcc--eeecccccccccCcccccc-CCcccccchhhhhh
Q 044155           67 HFGFPRPIVFRNFKTSCILFNE-ENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSV  142 (239)
Q Consensus        67 H~~~~~~i~H~dlk~~nil~~~-~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~  142 (239)
                      |   +.+++|+||||+||+++. ++.++++|||.+.........  ......++..|+|||.+.. ..++.++||||||+
T Consensus       131 H---~~givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGv  207 (342)
T cd07854         131 H---SANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGC  207 (342)
T ss_pred             H---hCCcccCCCCHHHEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHH
Confidence            9   899999999999999975 457899999998654322111  1122346788999998754 45788999999999


Q ss_pred             HHHHHhcCCCCcccccccccccccchhh------hhhhhhccchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCC
Q 044155          143 FLFELLTGWDVSDLVKDVHDLVCPFSEY------LKNCFEDNRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKD  214 (239)
Q Consensus       143 ~l~~~~~g~~p~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~  214 (239)
                      ++|+|++|..||................      ....+. ................+.  .....+.++.+++.+||..
T Consensus       208 il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~  286 (342)
T cd07854         208 IFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELL-NVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTF  286 (342)
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhh-hhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCC
Confidence            9999999999986443211110000000      000000 000000000000000000  0113456788999999999


Q ss_pred             CCCCCCCHHHHHH
Q 044155          215 SPADRPSMVDVAK  227 (239)
Q Consensus       215 dp~~Rps~~ell~  227 (239)
                      ||.+|||+.+++.
T Consensus       287 dP~~R~t~~ell~  299 (342)
T cd07854         287 NPMDRLTAEEALM  299 (342)
T ss_pred             CchhccCHHHHhC
Confidence            9999999999984

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=9.9e-33  Score=233.09  Aligned_cols=205  Identities=21%  Similarity=0.338  Sum_probs=168.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|.|||+++++|+|.... ..+|++|++.|+|.|+++.++    .++..+..+.|+.||++|+.|||   ++++|||||.
T Consensus       754 sldHpnl~RLLgvc~~s~-~qlvtq~mP~G~LlDyvr~hr----~~igsq~lLnw~~QIAkgM~YLe---~qrlVHrdLa  825 (1177)
T KOG1025|consen  754 SLDHPNLLRLLGVCMLST-LQLVTQLMPLGCLLDYVREHR----DNIGSQDLLNWCYQIAKGMKYLE---EQRLVHRDLA  825 (1177)
T ss_pred             cCCCchHHHHhhhcccch-HHHHHHhcccchHHHHHHHhh----ccccHHHHHHHHHHHHHHHHHHH---hcchhhhhhh
Confidence            479999999999998776 788999999999999999865    67889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      .+|||+..-..+||.|||+++.+..-. ........-++.|+|=|.+....++.++|||||||++||++| |..|++.+.
T Consensus       826 aRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~  905 (1177)
T KOG1025|consen  826 ARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIP  905 (1177)
T ss_pred             hhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCC
Confidence            999999999999999999998764332 222334445788999999999999999999999999999988 777775433


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                                            .+-+...+....+...+...+-++.-++.+||..|+..||+++++...+.+..+.
T Consensus       906 ----------------------~~eI~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ard  960 (1177)
T KOG1025|consen  906 ----------------------AEEIPDLLEKGERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARD  960 (1177)
T ss_pred             ----------------------HHHhhHHHhccccCCCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcC
Confidence                                  1111122222222333446677889999999999999999999999988876653

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.97  E-value=2.2e-32  Score=231.27  Aligned_cols=197  Identities=22%  Similarity=0.272  Sum_probs=148.4

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .|||||++|+.-.+..+.||..|.|. .+|.|++..... .......-.......|++.||++||   ..+||||||||.
T Consensus       561 ~H~NviRyyc~E~d~qF~YIalELC~-~sL~dlie~~~~-d~~~~~~i~~~~~l~q~~~GlaHLH---sl~iVHRDLkPQ  635 (903)
T KOG1027|consen  561 EHPNVIRYYCSEQDRQFLYIALELCA-CSLQDLIESSGL-DVEMQSDIDPISVLSQIASGLAHLH---SLKIVHRDLKPQ  635 (903)
T ss_pred             CCCceEEEEeeccCCceEEEEehHhh-hhHHHHHhcccc-chhhcccccHHHHHHHHHHHHHHHH---hcccccccCCCc
Confidence            69999999988888889999999997 999999987411 0011111344667899999999999   899999999999


Q ss_pred             ceeecC---CC--ceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcC-CCCc
Q 044155           83 CILFNE---EN--VAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG-WDVS  154 (239)
Q Consensus        83 nil~~~---~~--~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g-~~p~  154 (239)
                      ||||+.   ++  .++|+|||+++.+..+..  .......||-+|+|||++.....+.++||+||||++|+.++| ..||
T Consensus       636 NILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpF  715 (903)
T KOG1027|consen  636 NILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPF  715 (903)
T ss_pred             eEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCC
Confidence            999987   33  679999999998865432  234566799999999999988888899999999999999987 6787


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHH-HHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEK-EQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      +...                       +.-..++.+.+....- ........+||.+|++.||..||||.+|+.
T Consensus       716 Gd~~-----------------------~R~~NIl~~~~~L~~L~~~~d~eA~dLI~~ml~~dP~~RPsa~~VL~  766 (903)
T KOG1027|consen  716 GDSL-----------------------ERQANILTGNYTLVHLEPLPDCEAKDLISRMLNPDPQLRPSATDVLN  766 (903)
T ss_pred             CchH-----------------------HhhhhhhcCccceeeeccCchHHHHHHHHHhcCCCcccCCCHHHHhC
Confidence            5221                       1111111111111000 011116789999999999999999999974

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=6.4e-32  Score=241.67  Aligned_cols=194  Identities=18%  Similarity=0.208  Sum_probs=138.8

Q ss_pred             CCC-cccceeeEEEE-------eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC
Q 044155            2 MSH-NHILKLIGCCL-------ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP   73 (239)
Q Consensus         2 l~H-~niv~l~~~~~-------~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~   73 (239)
                      ++| +||++++++|.       +...++.++|++. ++|.+++....    ..++...++.++.||+.||.|||   +++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH---~~g  100 (793)
T PLN00181         29 LSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECED-VSLRQWLDNPD----RSVDAFECFHVFRQIVEIVNAAH---SQG  100 (793)
T ss_pred             hhHHHHHHHhhcccCCccccccccchhhhhhccCC-ccHHHHHhccc----ccccHHHHHHHHHHHHHHHHHHH---hCC
Confidence            467 79999999882       3345677899885 79999997532    46899999999999999999999   999


Q ss_pred             eeeccccCcceeecC-------------------CCceeEcccccccccCCCC--------c-------ceeeccccccc
Q 044155           74 IVFRNFKTSCILFNE-------------------ENVAKLFDFSLSISIPEGE--------T-------HITDTVMGTLG  119 (239)
Q Consensus        74 i~H~dlk~~nil~~~-------------------~~~~~l~dfg~~~~~~~~~--------~-------~~~~~~~~~~~  119 (239)
                      |+||||||+|||++.                   ++.+|++|||+++......        .       .......||+.
T Consensus       101 IvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  180 (793)
T PLN00181        101 IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSW  180 (793)
T ss_pred             eeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcc
Confidence            999999999999964                   3456667777664321100        0       00112357888


Q ss_pred             ccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHH
Q 044155          120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQ  199 (239)
Q Consensus       120 y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (239)
                      |+|||++.+..++.++|||||||++|||++|..|+.....                   .........    . +.....
T Consensus       181 Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~-------------------~~~~~~~~~----~-~~~~~~  236 (793)
T PLN00181        181 YTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSR-------------------TMSSLRHRV----L-PPQILL  236 (793)
T ss_pred             eEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHH-------------------HHHHHHHhh----c-Chhhhh
Confidence            9999999988999999999999999999998776532110                   000000000    0 010111


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          200 QLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       200 ~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .......++..||..+|.+|||+.|+++
T Consensus       237 ~~~~~~~~~~~~L~~~P~~Rps~~eil~  264 (793)
T PLN00181        237 NWPKEASFCLWLLHPEPSCRPSMSELLQ  264 (793)
T ss_pred             cCHHHHHHHHHhCCCChhhCcChHHHhh
Confidence            2234568889999999999999999976

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.97  E-value=3e-31  Score=205.45  Aligned_cols=197  Identities=25%  Similarity=0.340  Sum_probs=156.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|+||+++++++......++++|++.+++|.+++...     ..++...+..++.+++.++.+||   ..+++|+|++
T Consensus        43 ~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~i~  114 (244)
T smart00220       43 KLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKKR-----GRLSEDEARFYARQILSALEYLH---SNGIIHRDLK  114 (244)
T ss_pred             hCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHH---HcCeecCCcC
Confidence            368999999999999988999999999988999998764     33788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++++|||.+.......  ......++..|++||......++.++|+||||++++++++|..||....+ 
T Consensus       115 ~~ni~~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~-  191 (244)
T smart00220      115 PENILLDEDGHVKLADFGLARQLDPGG--LLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQ-  191 (244)
T ss_pred             HHHeEECCCCcEEEccccceeeecccc--ccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc-
Confidence            999999999999999999987654321  22344577889999999888889999999999999999999888753211 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHH-HHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKE-QQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                         ................... ..+..+.+++.+||..+|++||++.++++
T Consensus       192 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      192 -------------------LLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             -------------------HHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHHHhh
Confidence                               0111111111111111110 15567899999999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.2e-31  Score=212.21  Aligned_cols=202  Identities=23%  Similarity=0.266  Sum_probs=154.3

Q ss_pred             CCCcccceeeEEEE-eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MSHNHILKLIGCCL-ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~H~niv~l~~~~~-~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      |.||.||++|++|. +...+|.|+|||+|.+|.-+++.+     ..+.+++++.|+.||+.||.||.+- ..+|+|.|||
T Consensus       524 LDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFYLKQh-----klmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLK  597 (775)
T KOG1151|consen  524 LDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLKQH-----KLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLK  597 (775)
T ss_pred             cCcceeeeeeeeeeeccccceeeeeecCCCchhHHHHhh-----hhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccC
Confidence            78999999999986 667899999999999997788776     6688999999999999999999954 6689999999


Q ss_pred             CcceeecC---CCceeEcccccccccCCCCc------ceeecccccccccCcccccc----CCcccccchhhhhhHHHHH
Q 044155           81 TSCILFNE---ENVAKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRT----GVFNEKSNVFSFSVFLFEL  147 (239)
Q Consensus        81 ~~nil~~~---~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~----~~~~~~~Di~slG~~l~~~  147 (239)
                      |.|||+-+   .|.+||+|||+++.+.....      ..++...||.+|++||.+.-    .+.+.+.|+||+|+++|.+
T Consensus       598 PgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQC  677 (775)
T KOG1151|consen  598 PGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQC  677 (775)
T ss_pred             CccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhh
Confidence            99999854   46789999999988754221      24567789999999998753    3478899999999999999


Q ss_pred             hcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          148 LTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       148 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                      +.|+.||+.....-+           ....+......      .+..+...-.+.+.++||++||.+.-.+|....++.
T Consensus       678 lYGrKPFGhnqsQQd-----------ILqeNTIlkAt------EVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA  739 (775)
T KOG1151|consen  678 LYGRKPFGHNQSQQD-----------ILQENTILKAT------EVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLA  739 (775)
T ss_pred             hccCCCCCCchhHHH-----------HHhhhchhcce------eccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHc
Confidence            999999964321111           11111111111      011111123456778999999999999998776654

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.97  E-value=5e-31  Score=219.92  Aligned_cols=227  Identities=19%  Similarity=0.187  Sum_probs=159.1

Q ss_pred             CCCCcccceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      ||+|+|||+++++=++..      ...+|||||.+|||+..+.+-...  ..+++.+.+.++.+++.||.|||   +++|
T Consensus        67 KLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~--~GLpE~e~l~lL~d~~~al~~Lr---En~I  141 (732)
T KOG4250|consen   67 KLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENA--YGLPESEFLDLLSDLVSALRHLR---ENGI  141 (732)
T ss_pred             HcCchhhhhhcccCCccccCcccccceEEEeecCCCcHHHHhcCcccc--cCCCHHHHHHHHHHHHHHHHHHH---HcCc
Confidence            589999999998865443      457999999999999999864332  56999999999999999999999   9999


Q ss_pred             eeccccCcceeecC--CC--ceeEcccccccccCCCCcceeecccccccccCccccc-cCCcccccchhhhhhHHHHHhc
Q 044155           75 VFRNFKTSCILFNE--EN--VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-TGVFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        75 ~H~dlk~~nil~~~--~~--~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~~l~~~~~  149 (239)
                      +||||||.||++..  +|  .-||+|||.|+..+.+.  ......||..|.+||... ...++...|.|||||++|+++|
T Consensus       142 vHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s--~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caT  219 (732)
T KOG4250|consen  142 VHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS--LFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECAT  219 (732)
T ss_pred             eeccCCCCcEEEeecCCCceEEeeecccccccCCCCC--eeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhc
Confidence            99999999999743  33  35999999999876554  456778999999999998 5789999999999999999999


Q ss_pred             CCCCcccccccccccc-cchhhhhhhhhcc---chhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCC--C
Q 044155          150 GWDVSDLVKDVHDLVC-PFSEYLKNCFEDN---RFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRP--S  221 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rp--s  221 (239)
                      |..||.++........ ......+.+-.-.   ...+...-......  ...........+...+..+|..+|.+|-  .
T Consensus       220 G~lPF~p~~~pk~~~~~~~~~~tkkp~~v~i~~~~~eNgpv~~s~~lP~p~~Ls~~l~~~~~kwLa~~L~~~~~~~~~~~  299 (732)
T KOG4250|consen  220 GELPFIPFGGPKNNKEIMWHIITKKPSGVAIGAQEEENGPVEWSSTLPQPNHLSRGLATRLTKWLASMLEWNPRKRGHEG  299 (732)
T ss_pred             cCCCCCcCCCccccchhhhhhhccCCCceeEeeecccCCceeeeccCCCcccccHHHHhhhhHHHHHHHhhhHHHhCCCC
Confidence            9999987665432110 0000000000000   00000000000000  1111123334455677778888998888  6


Q ss_pred             HHHHHHHHHHHHH
Q 044155          222 MVDVAKKLRQIYR  234 (239)
Q Consensus       222 ~~ell~~L~~l~~  234 (239)
                      ..+....+..++.
T Consensus       300 ~~~~Fa~~~dIL~  312 (732)
T KOG4250|consen  300 FDRFFAEVDDILN  312 (732)
T ss_pred             cchHHHHHHHHHh
Confidence            6666666665554

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=4.8e-32  Score=218.58  Aligned_cols=189  Identities=20%  Similarity=0.304  Sum_probs=157.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .+.|.||++|--|.+....|++||-|-||.|+..++..     ..++....+-++..+.+|+.|||   .++|+.|||||
T Consensus       477 ~~s~fIvrLYrTfrd~kyvYmLmEaClGGElWTiLrdR-----g~Fdd~tarF~~acv~EAfeYLH---~k~iIYRDLKP  548 (732)
T KOG0614|consen  477 CRSDFIVRLYRTFRDSKYVYMLMEACLGGELWTILRDR-----GSFDDYTARFYVACVLEAFEYLH---RKGIIYRDLKP  548 (732)
T ss_pred             cCchHHHHHHHHhccchhhhhhHHhhcCchhhhhhhhc-----CCcccchhhhhHHHHHHHHHHHH---hcCceeccCCh
Confidence            35789999999999999999999999999999999876     56888889999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +|.+++.+|-+||.|||+++....+.  .+-+++||+.|.|||++.....+.++|.||||+++||+++|.+||.....+ 
T Consensus       549 ENllLd~~Gy~KLVDFGFAKki~~g~--KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpm-  625 (732)
T KOG0614|consen  549 ENLLLDNRGYLKLVDFGFAKKIGSGR--KTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPM-  625 (732)
T ss_pred             hheeeccCCceEEeehhhHHHhccCC--ceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchH-
Confidence            99999999999999999998875554  356789999999999999999999999999999999999999998754422 


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS  221 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps  221 (239)
                                          ..+..++.+.-.-..+........++|.+..+.+|.+|.-
T Consensus       626 --------------------ktYn~ILkGid~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG  665 (732)
T KOG0614|consen  626 --------------------KTYNLILKGIDKIEFPRRITKTATDLIKKLCRDNPTERLG  665 (732)
T ss_pred             --------------------HHHHHHHhhhhhhhcccccchhHHHHHHHHHhcCcHhhhc
Confidence                                2222222222111122345566778999999999999975

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.97  E-value=9.8e-32  Score=205.60  Aligned_cols=213  Identities=20%  Similarity=0.258  Sum_probs=154.2

Q ss_pred             CCCcccceeeEEEEeC------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            2 MSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         2 l~H~niv~l~~~~~~~------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      ++|+||++++.+|.-.      ...++|||++. .+|...+.       .+++=.....++.|++.|++|||   +.+|+
T Consensus        72 v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~-~nl~~vi~-------~elDH~tis~i~yq~~~~ik~lh---s~~Ii  140 (369)
T KOG0665|consen   72 VNHKNIISLLNVFTPQKTLEEFQEVYLVMELMD-ANLCQVIL-------MELDHETISYILYQMLCGIKHLH---SAGII  140 (369)
T ss_pred             hcccceeeeeeccCccccHHHHHhHHHHHHhhh-hHHHHHHH-------HhcchHHHHHHHHHHHHHHHHHH---hccee
Confidence            6899999999998632      35789999997 89999887       34666788899999999999999   99999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      ||||||+||++..+..+||.|||+++.....  -..+....+..|.|||++.+..+.+.+||||+||++.||++|+..|.
T Consensus       141 hRdLkPsnivv~~~~~lKi~dfg~ar~e~~~--~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~  218 (369)
T KOG0665|consen  141 HRDLKPSNIVVNSDCTLKILDFGLARTEDTD--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFP  218 (369)
T ss_pred             ecccCcccceecchhheeeccchhhcccCcc--cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEec
Confidence            9999999999999999999999998764332  23445667889999999999889999999999999999999998876


Q ss_pred             ccccccc-------ccccchhhhhhhhhccc-hhhhhh--------hhhhcCCCcH---HHHHHHHHHHHHHhhhcCCCC
Q 044155          156 LVKDVHD-------LVCPFSEYLKNCFEDNR-FTEIVD--------HIVVEDVSSI---EKEQQLHASAQVTFECIKDSP  216 (239)
Q Consensus       156 ~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~li~~cl~~dp  216 (239)
                      +......       +..+...+......... +.....        ........+.   .....+....+++.+||..+|
T Consensus       219 g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~p  298 (369)
T KOG0665|consen  219 GKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDP  298 (369)
T ss_pred             CchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccCh
Confidence            4333221       12222222221111100 000000        0000000000   001234456799999999999


Q ss_pred             CCCCCHHHHHH
Q 044155          217 ADRPSMVDVAK  227 (239)
Q Consensus       217 ~~Rps~~ell~  227 (239)
                      ++|.|++++|+
T Consensus       299 e~Risv~daL~  309 (369)
T KOG0665|consen  299 EKRISVDDALR  309 (369)
T ss_pred             hhcccHHHHhc
Confidence            99999999985

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-31  Score=231.21  Aligned_cols=190  Identities=21%  Similarity=0.268  Sum_probs=152.4

Q ss_pred             cceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceee
Q 044155            7 ILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILF   86 (239)
Q Consensus         7 iv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~   86 (239)
                      |+.+.-.|.++.+.|+||||++||+|-.++.+.     .+++++.++-++..|..||.-+|   ..|+|||||||+|||+
T Consensus       137 iv~LhyAFQD~~~LYlVMdY~pGGDlltLlSk~-----~~~pE~~ArFY~aEiVlAldslH---~mgyVHRDiKPDNvLl  208 (1317)
T KOG0612|consen  137 IVQLHYAFQDERYLYLVMDYMPGGDLLTLLSKF-----DRLPEDWARFYTAEIVLALDSLH---SMGYVHRDIKPDNVLL  208 (1317)
T ss_pred             HHHHHHHhcCccceEEEEecccCchHHHHHhhc-----CCChHHHHHHHHHHHHHHHHHHH---hccceeccCCcceeEe
Confidence            566666788999999999999999999999876     57999999999999999999999   9999999999999999


Q ss_pred             cCCCceeEcccccccccCCCCcceeecccccccccCcccccc-----CCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           87 NEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-----GVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        87 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +..|.+||+|||.+..+...+.-......|||.|.+||++..     +.|++..|-||+||++|||+.|..||...    
T Consensus       209 d~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYad----  284 (1317)
T KOG0612|consen  209 DKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYAD----  284 (1317)
T ss_pred             cccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHH----
Confidence            999999999999887776555555667789999999999863     45889999999999999999998887532    


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhc--CCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC---HHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVE--DVSSIEKEQQLHASAQVTFECIKDSPADRPS---MVDVA  226 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps---~~ell  226 (239)
                                       ...+.+.+++.-  ....+.....+...++||.+.+. +|..|..   ++++.
T Consensus       285 -----------------slveTY~KIm~hk~~l~FP~~~~VSeeakdLI~~ll~-~~e~RLgrngiedik  336 (1317)
T KOG0612|consen  285 -----------------SLVETYGKIMNHKESLSFPDETDVSEEAKDLIEALLC-DREVRLGRNGIEDIK  336 (1317)
T ss_pred             -----------------HHHHHHHHHhchhhhcCCCcccccCHHHHHHHHHHhc-ChhhhcccccHHHHH
Confidence                             222222222211  12222223467788899988777 7888877   66553

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-31  Score=204.55  Aligned_cols=194  Identities=21%  Similarity=0.279  Sum_probs=158.8

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      -+||.+..+.-.|......|+||||..||.|.-.+.+.     ..+++...+-+...|..||.|||   +++||.||+|.
T Consensus       225 ~~HPFLt~LKYsFQt~drlCFVMeyanGGeLf~HLsre-----r~FsE~RtRFYGaEIvsAL~YLH---s~~ivYRDlKL  296 (516)
T KOG0690|consen  225 CRHPFLTSLKYSFQTQDRLCFVMEYANGGELFFHLSRE-----RVFSEDRTRFYGAEIVSALGYLH---SRNIVYRDLKL  296 (516)
T ss_pred             ccCcHHHHhhhhhccCceEEEEEEEccCceEeeehhhh-----hcccchhhhhhhHHHHHHhhhhh---hCCeeeeechh
Confidence            37999999988899999999999999999998888765     56778888889999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +|.|++.+|.+||+|||+++.... .......++|||.|+|||++....|....|-|.+|+++|||+.|+.||..     
T Consensus       297 ENLlLDkDGHIKitDFGLCKE~I~-~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn-----  370 (516)
T KOG0690|consen  297 ENLLLDKDGHIKITDFGLCKEEIK-YGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYN-----  370 (516)
T ss_pred             hhheeccCCceEeeecccchhccc-ccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccc-----
Confidence            999999999999999999876432 22346788999999999999999999999999999999999999888753     


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC--HHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS--MVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps--~~ell~  227 (239)
                                      .+...+..-++.+...-  +...+++.+.++...|..||.+|.-  .+++.+
T Consensus       371 ----------------~dh~kLFeLIl~ed~kF--Pr~ls~eAktLLsGLL~kdP~kRLGgGpdDakE  420 (516)
T KOG0690|consen  371 ----------------KDHEKLFELILMEDLKF--PRTLSPEAKTLLSGLLKKDPKKRLGGGPDDAKE  420 (516)
T ss_pred             ----------------cchhHHHHHHHhhhccC--CccCCHHHHHHHHHHhhcChHhhcCCCchhHHH
Confidence                            22223333333333221  2355677889999999999999973  444444

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.97  E-value=6.8e-30  Score=189.37  Aligned_cols=169  Identities=17%  Similarity=0.195  Sum_probs=126.0

Q ss_pred             CChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcc
Q 044155           30 GTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH  109 (239)
Q Consensus        30 ~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~  109 (239)
                      |||.++++...    ..+++..+..++.|++.||.|||   +.+      ||+||+++.++.+++  ||.+......   
T Consensus         1 GsL~~~l~~~~----~~l~~~~~~~i~~qi~~~L~~lH---~~~------kp~Nil~~~~~~~~~--fG~~~~~~~~---   62 (176)
T smart00750        1 VSLADILEVRG----RPLNEEEIWAVCLQCLRALRELH---RQA------KSGNILLTWDGLLKL--DGSVAFKTPE---   62 (176)
T ss_pred             CcHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHH---hcC------CcccEeEcCccceee--ccceEeeccc---
Confidence            68999997642    56899999999999999999999   665      999999999999998  9988665332   


Q ss_pred             eeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhh
Q 044155          110 ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVV  189 (239)
Q Consensus       110 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (239)
                         ...|++.|+|||++.+..++.++||||||+++|||++|..||.........       ..         ........
T Consensus        63 ---~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~-------~~---------~~~~~~~~  123 (176)
T smart00750       63 ---QSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAI-------LE---------ILLNGMPA  123 (176)
T ss_pred             ---cCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHH-------HH---------HHHHHhcc
Confidence               125789999999999999999999999999999999999998532211100       00         00000000


Q ss_pred             c-CCCcHHHHHHHH--HHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          190 E-DVSSIEKEQQLH--ASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       190 ~-~~~~~~~~~~~~--~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      . ............  .+.+++.+||..+|.+|||+.|+++.+..+..+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~~  172 (176)
T smart00750      124 DDPRDRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALFAE  172 (176)
T ss_pred             CCccccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Confidence            0 000011122333  689999999999999999999999988776543

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.5e-31  Score=198.93  Aligned_cols=218  Identities=17%  Similarity=0.243  Sum_probs=156.9

Q ss_pred             CCCcccceeeEEEEe--------CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC
Q 044155            2 MSHNHILKLIGCCLE--------TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP   73 (239)
Q Consensus         2 l~H~niv~l~~~~~~--------~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~   73 (239)
                      |+|+|++.+++.|..        ...+++||.+|+ -+|.-++....    .++...++.+++.++..||.|+|   ...
T Consensus        73 lkHenv~nliEic~tk~Tp~~r~r~t~ylVf~~ce-hDLaGlLsn~~----vr~sls~Ikk~Mk~Lm~GL~~iH---r~k  144 (376)
T KOG0669|consen   73 LKHENVVNLIEICRTKATPTNRDRATFYLVFDFCE-HDLAGLLSNRK----VRFSLSEIKKVMKGLMNGLYYIH---RNK  144 (376)
T ss_pred             hcchhHHHHHHHHhhccCCcccccceeeeeHHHhh-hhHHHHhcCcc----ccccHHHHHHHHHHHHHHHHHHH---Hhh
Confidence            689999999998863        234789999998 68888886543    57899999999999999999999   899


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCCc---ceeecccccccccCccccccC-CcccccchhhhhhHHHHHhc
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET---HITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~  149 (239)
                      |+|||+|+.|+||+.++.++|+|||+++.+..+..   ..-+.+..|.+|++||.+.+. .++++.|||.-||++.||++
T Consensus       145 ilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwt  224 (376)
T KOG0669|consen  145 ILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWT  224 (376)
T ss_pred             HHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHc
Confidence            99999999999999999999999999976643221   112345679999999999885 48999999999999999999


Q ss_pred             CCCCccccccccccccc---chhhhhhhhhccchhhhhhhhhhcCCCcHHHH---------HHHHHHHHHHhhhcCCCCC
Q 044155          150 GWDVSDLVKDVHDLVCP---FSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKE---------QQLHASAQVTFECIKDSPA  217 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~li~~cl~~dp~  217 (239)
                      |.+.+++-.........   -.......|.+.....+..++-.++.......         ...+...+++..++..||.
T Consensus       225 rspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~  304 (376)
T KOG0669|consen  225 RSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPT  304 (376)
T ss_pred             cCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcc
Confidence            99988764432221110   00111111222222222222211111110000         1124567999999999999


Q ss_pred             CCCCHHHHHH
Q 044155          218 DRPSMVDVAK  227 (239)
Q Consensus       218 ~Rps~~ell~  227 (239)
                      +|+.+++++.
T Consensus       305 kR~~ad~aln  314 (376)
T KOG0669|consen  305 KRIDADQALN  314 (376)
T ss_pred             cCcchHhhhc
Confidence            9999999875

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.97  E-value=3.3e-30  Score=226.07  Aligned_cols=92  Identities=25%  Similarity=0.245  Sum_probs=85.8

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++......++||||+.+++|.+++...     ..++...++.++.||+.||.|||   ..+|+|+||||
T Consensus        61 l~hp~Iv~~~~~~~~~~~~~lVmEy~~g~~L~~li~~~-----~~l~~~~~~~i~~qil~aL~yLH---~~gIiHrDLKP  132 (669)
T cd05610          61 SKSPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIY-----GYFDEEMAVKYISEVALALDYLH---RHGIIHRDLKP  132 (669)
T ss_pred             cCCCCcCeEEEEEEECCEEEEEEeCCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCccH
Confidence            68999999999999999999999999999999999764     45788889999999999999999   89999999999


Q ss_pred             cceeecCCCceeEccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~  101 (239)
                      +|||++.++.++|+|||+++
T Consensus       133 ~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610         133 DNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             HHEEEcCCCCEEEEeCCCCc
Confidence            99999999999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.96  E-value=2e-29  Score=216.53  Aligned_cols=200  Identities=20%  Similarity=0.145  Sum_probs=130.8

Q ss_pred             eCCCceEEEEEccCCChhhhhhcCCCCCC---------------CcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155           16 ETPIPILVFESVQYGTLWDRILGAPQPHF---------------EPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus        16 ~~~~~~iv~e~~~~~sL~~~l~~~~~~~~---------------~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      .....++|+||+.+++|.+++........               .......+..++.|++.||.|||   +++|+|||||
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH---~~gIiHRDLK  282 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLH---STGIVHRDVK  282 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHH---HCCEEeCcCC
Confidence            45578999999999999999875431100               01123345678999999999999   8999999999


Q ss_pred             CcceeecC-CCceeEcccccccccCCCCcceeecccccccccCccccccC----------------------Ccccccch
Q 044155           81 TSCILFNE-ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG----------------------VFNEKSNV  137 (239)
Q Consensus        81 ~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~----------------------~~~~~~Di  137 (239)
                      |+|||++. ++.+||+|||++...............+++.|+|||.+...                      .++.++||
T Consensus       283 P~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DV  362 (566)
T PLN03225        283 PQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDI  362 (566)
T ss_pred             HHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCccc
Confidence            99999986 57899999999976544433344566789999999966422                      23345699


Q ss_pred             hhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcH------HHHHHHHHHHHHHhhh
Q 044155          138 FSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSI------EKEQQLHASAQVTFEC  211 (239)
Q Consensus       138 ~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~li~~c  211 (239)
                      |||||++|||+++..++....      ..+.......  ........ ..........      ..+.......+|+.+|
T Consensus       363 wSlGviL~el~~~~~~~~~~~------~~~~~~l~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~m  433 (566)
T PLN03225        363 YSAGLIFLQMAFPNLRSDSNL------IQFNRQLKRN--DYDLVAWR-KLVEPRASPDLRRGFEVLDLDGGAGWELLKSM  433 (566)
T ss_pred             HHHHHHHHHHHhCcCCCchHH------HHHHHHHHhc--CCcHHHHH-HhhccccchhhhhhhhhccccchHHHHHHHHH
Confidence            999999999998765533110      0000000000  00000000 0000000000      0011223456899999


Q ss_pred             cCCCCCCCCCHHHHHH
Q 044155          212 IKDSPADRPSMVDVAK  227 (239)
Q Consensus       212 l~~dp~~Rps~~ell~  227 (239)
                      |+.||.+|||++++++
T Consensus       434 L~~dP~kR~ta~e~L~  449 (566)
T PLN03225        434 MRFKGRQRISAKAALA  449 (566)
T ss_pred             ccCCcccCCCHHHHhC
Confidence            9999999999999986

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.96  E-value=1.9e-30  Score=187.66  Aligned_cols=148  Identities=22%  Similarity=0.241  Sum_probs=123.1

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .-|.+|++||...+....||.||.|+ .||..+.+.--. ....+++...=+|+..+..||.|||+  ...++|||+||.
T Consensus       103 ~CPf~V~FyGa~~regdvwIcME~M~-tSldkfy~~v~~-~g~~ipE~vlGkIa~Svv~al~~L~~--kL~vIHRDvKPs  178 (282)
T KOG0984|consen  103 DCPFTVHFYGALFREGDVWICMELMD-TSLDKFYRKVLK-KGGTIPEDVLGKIAVSVVHALEFLHS--KLSVIHRDVKPS  178 (282)
T ss_pred             CCCeEEEeehhhhccccEEEeHHHhh-hhHHHHHHHHHh-cCCcCchHHhhHhHHHHHHHHHHHHH--HhhhhhccCCcc
Confidence            35889999999999999999999997 788665443211 11678999999999999999999997  679999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc----CCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT----GVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~----~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||++.+|++|++|||++-.+..+..  .+.-.|...|+|||.+..    ..|+.++||||||+.+.||.+++.||+.
T Consensus       179 NiLIn~~GqVKiCDFGIsG~L~dSiA--kt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~  254 (282)
T KOG0984|consen  179 NILINYDGQVKICDFGISGYLVDSIA--KTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYES  254 (282)
T ss_pred             eEEEccCCcEEEcccccceeehhhhH--HHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccc
Confidence            99999999999999999866644421  122457889999998864    3589999999999999999999999753

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-30  Score=209.96  Aligned_cols=196  Identities=22%  Similarity=0.295  Sum_probs=156.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++.||-||.+.-.|++....++|||-+. |+....+-+...   .++++...+.++.||+.||.|||   .++|+|.|||
T Consensus       619 ~l~HPGiV~le~M~ET~ervFVVMEKl~-GDMLEMILSsEk---gRL~er~TkFlvtQIL~ALr~LH---~knIvHCDLK  691 (888)
T KOG4236|consen  619 NLHHPGIVNLECMFETPERVFVVMEKLH-GDMLEMILSSEK---GRLPERITKFLVTQILVALRYLH---FKNIVHCDLK  691 (888)
T ss_pred             hcCCCCeeEEEEeecCCceEEEEehhhc-chHHHHHHHhhc---ccchHHHHHHHHHHHHHHHHHhh---hcceeeccCC
Confidence            4789999999999999999999999996 677676655443   68999999999999999999999   8999999999


Q ss_pred             CcceeecCCC---ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEEN---VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+|||+.+..   ++||+|||+++...+..  ......||++|+|||++....|+..-|+||.|+++|.-++|.+||.+.
T Consensus       692 PENVLLas~~~FPQvKlCDFGfARiIgEks--FRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEd  769 (888)
T KOG4236|consen  692 PENVLLASASPFPQVKLCDFGFARIIGEKS--FRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNED  769 (888)
T ss_pred             chheeeccCCCCCceeeccccceeecchhh--hhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCc
Confidence            9999997654   68999999998875433  244678999999999999999999999999999999999999999877


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                      .++.+..+-    ....+..+.|                 .+.+....++|...|+.+=.+|-|.++-+
T Consensus       770 EdIndQIQN----AaFMyPp~PW-----------------~eis~~AidlIn~LLqVkm~kRysvdk~l  817 (888)
T KOG4236|consen  770 EDINDQIQN----AAFMYPPNPW-----------------SEISPEAIDLINNLLQVKMRKRYSVDKSL  817 (888)
T ss_pred             cchhHHhhc----cccccCCCch-----------------hhcCHHHHHHHHHHHHHHHHHhcchHhhc
Confidence            765543320    0001111111                 24445567788888888888888876654

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.4e-29  Score=221.63  Aligned_cols=179  Identities=21%  Similarity=0.325  Sum_probs=131.5

Q ss_pred             CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccc
Q 044155           19 IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFS   98 (239)
Q Consensus        19 ~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg   98 (239)
                      ..||-||||+..++.++++.+...   . ......+++.+|++||+|+|   ++|++||||||.||+++.++.+||+|||
T Consensus       670 ~LYIQMEyCE~~ll~~iI~~N~~~---~-~~d~~wrLFreIlEGLaYIH---~~giIHRDLKP~NIFLd~~~~VKIGDFG  742 (1351)
T KOG1035|consen  670 ILYIQMEYCEKTLLRDIIRRNHFN---S-QRDEAWRLFREILEGLAYIH---DQGIIHRDLKPRNIFLDSRNSVKIGDFG  742 (1351)
T ss_pred             EEEEEHhhhhhhHHHHHHHhcccc---h-hhHHHHHHHHHHHHHHHHHH---hCceeeccCCcceeEEcCCCCeeecccc
Confidence            457889999988888888765321   1 46778899999999999999   9999999999999999999999999999


Q ss_pred             cccccC----------------CCC-cceeecccccccccCccccccCC---cccccchhhhhhHHHHHhcCCCCccccc
Q 044155           99 LSISIP----------------EGE-THITDTVMGTLGYCAPEYMRTGV---FNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        99 ~~~~~~----------------~~~-~~~~~~~~~~~~y~aPE~~~~~~---~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      ++....                .+. ....+...||.-|+|||.+.+..   |+.|+|+||||++++||+.-   |+.--
T Consensus       743 LAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yP---F~TsM  819 (1351)
T KOG1035|consen  743 LATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYP---FGTSM  819 (1351)
T ss_pred             cchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhcc---CCchH
Confidence            987621                011 11345677999999999997644   99999999999999999874   22100


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          .-...+.....+..+..  ...+..+.-+++|+.|++.||++||||.|||.
T Consensus       820 --------------------ERa~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  820 --------------------ERASILTNLRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRPTATELLN  870 (1351)
T ss_pred             --------------------HHHHHHHhcccCCCCCCcccccccchHHHHHHHHHhcCCCccCCCHHHHhh
Confidence                                00011111111111111  12234455678999999999999999999985

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.96  E-value=4.1e-30  Score=182.58  Aligned_cols=215  Identities=18%  Similarity=0.176  Sum_probs=157.6

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      |+|+|||+++++.-..+...+|+|+|. .+|..+..+-+    ..++....+.++.|++.||.|+|   ++++.|||+||
T Consensus        58 lkhknivrl~dvlhsdkkltlvfe~cd-qdlkkyfdsln----g~~d~~~~rsfmlqllrgl~fch---shnvlhrdlkp  129 (292)
T KOG0662|consen   58 LKHKNIVRLHDVLHSDKKLTLVFEFCD-QDLKKYFDSLN----GDLDPEIVRSFMLQLLRGLGFCH---SHNVLHRDLKP  129 (292)
T ss_pred             hhhcceeehhhhhccCceeEEeHHHhh-HHHHHHHHhcC----CcCCHHHHHHHHHHHHhhhhhhh---hhhhhhccCCc
Confidence            689999999999988889999999997 79998888765    56889999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      .|.+++.+|++|++|||+++.+.-. ..+-+....|.+|++|.++.+.+ |++.-|+||-||++.|+.....|.-+..+.
T Consensus       130 qnllin~ngelkladfglarafgip-vrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dv  208 (292)
T KOG0662|consen  130 QNLLINRNGELKLADFGLARAFGIP-VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV  208 (292)
T ss_pred             ceEEeccCCcEEecccchhhhcCCc-eEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcH
Confidence            9999999999999999999877432 23445566799999999999876 888999999999999998865554333332


Q ss_pred             cc-ccccchhhhhhhhhccchhhhhhhhhhcCCC--------cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HD-LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--------SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .+ ....|... . ......|+....-.....+.        ..........-.++++..+.-+|..|.|+++.++
T Consensus       209 ddqlkrif~~l-g-~p~ed~wps~t~lpdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalq  282 (292)
T KOG0662|consen  209 DDQLKRIFRLL-G-TPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQ  282 (292)
T ss_pred             HHHHHHHHHHh-C-CCccccCCccccCCCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhc
Confidence            22 11111110 0 01111222211111111111        0111233344568889999999999999998875

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.6e-29  Score=192.43  Aligned_cols=194  Identities=22%  Similarity=0.317  Sum_probs=155.7

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||.+|-+...|.++...++|.||..||+|--.+++.     ..+++..++.+...|+.||.|||   ++||+.||||.+
T Consensus       309 n~pflvglhscfqtesrlffvieyv~ggdlmfhmqrq-----rklpeeharfys~ei~lal~flh---~rgiiyrdlkld  380 (593)
T KOG0695|consen  309 NNPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ-----RKLPEEHARFYSAEICLALNFLH---ERGIIYRDLKLD  380 (593)
T ss_pred             CCCeEEehhhhhcccceEEEEEEEecCcceeeehhhh-----hcCcHHHhhhhhHHHHHHHHHHh---hcCeeeeecccc
Confidence            7999999999999999999999999999997777665     67999999999999999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      |+|++..|.+|++|+|+.+..... ...++++.||+-|.|||++.+..|....|-|+||++++||+.|+.||+.......
T Consensus       381 nvlldaeghikltdygmcke~l~~-gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~  459 (593)
T KOG0695|consen  381 NVLLDAEGHIKLTDYGMCKEGLGP-GDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNP  459 (593)
T ss_pred             ceEEccCCceeecccchhhcCCCC-CcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCc
Confidence            999999999999999998754322 2236788999999999999999999999999999999999999999986542111


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP  220 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp  220 (239)
                                   ..+....+.+-++.+..+-  +...+-....++..-|+.||.+|.
T Consensus       460 -------------d~ntedylfqvilekqiri--prslsvkas~vlkgflnkdp~erl  502 (593)
T KOG0695|consen  460 -------------DMNTEDYLFQVILEKQIRI--PRSLSVKASHVLKGFLNKDPKERL  502 (593)
T ss_pred             -------------ccchhHHHHHHHhhhcccc--cceeehhhHHHHHHhhcCCcHHhc
Confidence                         1122222333333332221  123444456777788899999886

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=4.7e-29  Score=197.32  Aligned_cols=186  Identities=22%  Similarity=0.309  Sum_probs=153.2

Q ss_pred             CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcc
Q 044155            4 HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSC   83 (239)
Q Consensus         4 H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~n   83 (239)
                      -|.++++...|.+-+.+++||||+.||+|-=.+++-     ..+.+..+.-++..|+.||-+||   ++||+.||||.+|
T Consensus       409 ppFL~qlHScFQTmDRLyFVMEyvnGGDLMyhiQQ~-----GkFKEp~AvFYAaEiaigLFFLh---~kgIiYRDLKLDN  480 (683)
T KOG0696|consen  409 PPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-----GKFKEPVAVFYAAEIAIGLFFLH---SKGIIYRDLKLDN  480 (683)
T ss_pred             CchHHHHHHHhhhhhheeeEEEEecCchhhhHHHHh-----cccCCchhhhhhHHHHHHhhhhh---cCCeeeeeccccc
Confidence            467788888888889999999999999997667654     56778888899999999999999   9999999999999


Q ss_pred             eeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccccc
Q 044155           84 ILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDL  163 (239)
Q Consensus        84 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~  163 (239)
                      |+++.+|.+||+|||+++.-... ..-+.++.||+.|+|||++...+|+..+|-||+|+++|||+.|+.||++       
T Consensus       481 vmLd~eGHiKi~DFGmcKEni~~-~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdG-------  552 (683)
T KOG0696|consen  481 VMLDSEGHIKIADFGMCKENIFD-GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDG-------  552 (683)
T ss_pred             eEeccCCceEeeecccccccccC-CcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCC-------
Confidence            99999999999999998653222 2235688999999999999999999999999999999999999888863       


Q ss_pred             cccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 044155          164 VCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS  221 (239)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps  221 (239)
                                    ++..++.+++...+..  .+...+.+..++....+...|++|.-
T Consensus       553 --------------eDE~elF~aI~ehnvs--yPKslSkEAv~ickg~ltK~P~kRLG  594 (683)
T KOG0696|consen  553 --------------EDEDELFQAIMEHNVS--YPKSLSKEAVAICKGLLTKHPGKRLG  594 (683)
T ss_pred             --------------CCHHHHHHHHHHccCc--CcccccHHHHHHHHHHhhcCCccccC
Confidence                          2333444444444432  23456677788888999999999963

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.95  E-value=8.7e-28  Score=202.19  Aligned_cols=209  Identities=16%  Similarity=0.125  Sum_probs=139.0

Q ss_pred             ccceeeEEEEe--------CCCceEEEEEccCCChhhhhhcCCCCC-------------------CCcCCHHHHHHHHHH
Q 044155            6 HILKLIGCCLE--------TPIPILVFESVQYGTLWDRILGAPQPH-------------------FEPLLLKHRLKIAMD   58 (239)
Q Consensus         6 niv~l~~~~~~--------~~~~~iv~e~~~~~sL~~~l~~~~~~~-------------------~~~~~~~~~~~~~~~   58 (239)
                      ++++++++|..        .+..++|+||+++++|.++++...+..                   ...+++..++.++.|
T Consensus       238 ~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~q  317 (507)
T PLN03224        238 SCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQ  317 (507)
T ss_pred             hhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHH
Confidence            34677777753        346799999999999999987532110                   023456778899999


Q ss_pred             HHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCc-------
Q 044155           59 IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVF-------  131 (239)
Q Consensus        59 i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-------  131 (239)
                      ++.||.|||   ..+++||||||+||+++.++.++|+|||++...............+++.|+|||.+.....       
T Consensus       318 l~~aL~~lH---~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~  394 (507)
T PLN03224        318 VLTGLRKLH---RIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRAPAP  394 (507)
T ss_pred             HHHHHHHHH---HCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCCCCCccchh
Confidence            999999999   8999999999999999999999999999986543322211222334789999998754321       


Q ss_pred             ---------------ccccchhhhhhHHHHHhcCCC-CcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcH
Q 044155          132 ---------------NEKSNVFSFSVFLFELLTGWD-VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSI  195 (239)
Q Consensus       132 ---------------~~~~Di~slG~~l~~~~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (239)
                                     ..+.|+||+||++++|+++.. |+.........       ...  ..... ..............
T Consensus       395 ~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~-------~~~--~~~~~-~~~r~~~~~~~~~~  464 (507)
T PLN03224        395 AMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTE-------LRQ--YDNDL-NRWRMYKGQKYDFS  464 (507)
T ss_pred             hhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhH-------Hhh--ccchH-HHHHhhcccCCCcc
Confidence                           134699999999999999864 55322111000       000  00000 00000111111111


Q ss_pred             HHHHHHHHHHHHHhhhcCCCC---CCCCCHHHHHH
Q 044155          196 EKEQQLHASAQVTFECIKDSP---ADRPSMVDVAK  227 (239)
Q Consensus       196 ~~~~~~~~~~~li~~cl~~dp---~~Rps~~ell~  227 (239)
                      ..+..+...++++.+||..+|   .+|+|++|+++
T Consensus       465 ~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~  499 (507)
T PLN03224        465 LLDRNKEAGWDLACKLITKRDQANRGRLSVGQALS  499 (507)
T ss_pred             cccccChHHHHHHHHHhccCCCCcccCCCHHHHhC
Confidence            123456778999999999866   68999999985

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.95  E-value=9.2e-29  Score=205.10  Aligned_cols=198  Identities=21%  Similarity=0.257  Sum_probs=157.1

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      -+||||+.++|.+......|+.||||.+|+|.|..+..     ..+.+.++...+...++|++|||   +.+-+|||+|-
T Consensus        69 c~h~nivay~gsylr~dklwicMEycgggslQdiy~~T-----gplselqiayvcRetl~gl~ylh---s~gk~hRdiKG  140 (829)
T KOG0576|consen   69 CRHPNIVAYFGSYLRRDKLWICMEYCGGGSLQDIYHVT-----GPLSELQIAYVCRETLQGLKYLH---SQGKIHRDIKG  140 (829)
T ss_pred             CCCcChHHHHhhhhhhcCcEEEEEecCCCcccceeeec-----ccchhHHHHHHHhhhhccchhhh---cCCcccccccc
Confidence            37999999999999999999999999999999988776     67899999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc---cCCcccccchhhhhhHHHHHhcCCCC-cccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR---TGVFNEKSNVFSFSVFLFELLTGWDV-SDLV  157 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~~l~~~~~g~~p-~~~~  157 (239)
                      .||++++.|.+|+.|||.+..... ...+...+.||+.|||||+..   .+.|...+|||++|+...|+-.-..| |..+
T Consensus       141 anilltd~gDvklaDfgvsaqita-ti~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlh  219 (829)
T KOG0576|consen  141 ANILLTDEGDVKLADFGVSAQITA-TIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLH  219 (829)
T ss_pred             cceeecccCceeecccCchhhhhh-hhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccc
Confidence            999999999999999998755432 223456788999999999874   35589999999999999998776554 2211


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                   .....+..+....+........+.+.+.+|+..|+..+|++|||++.+++
T Consensus       220 p-------------------mr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  220 P-------------------MRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             h-------------------HHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCccCCChhhhee
Confidence            1                   11111111111111112222366778899999999999999999998875

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.95  E-value=1.4e-28  Score=199.16  Aligned_cols=213  Identities=20%  Similarity=0.217  Sum_probs=157.9

Q ss_pred             ccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCccee
Q 044155            6 HILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCIL   85 (239)
Q Consensus         6 niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil   85 (239)
                      |+++++..|...+++|+|||.+. .+|.++++..+..  ..+..+.+..++.|+..||.+|-   ..+++|.||||+|||
T Consensus       495 Hclrl~r~F~hknHLClVFE~Ls-lNLRevLKKyG~n--vGL~ikaVRsYaqQLflALklLK---~c~vlHaDIKPDNiL  568 (752)
T KOG0670|consen  495 HCLRLFRHFKHKNHLCLVFEPLS-LNLREVLKKYGRN--VGLHIKAVRSYAQQLFLALKLLK---KCGVLHADIKPDNIL  568 (752)
T ss_pred             HHHHHHHHhhhcceeEEEehhhh-chHHHHHHHhCcc--cceeehHHHHHHHHHHHHHHHHH---hcCeeecccCccceE
Confidence            56778888889999999999995 9999999987543  45778888999999999999999   999999999999999


Q ss_pred             ecCCC-ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc---
Q 044155           86 FNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH---  161 (239)
Q Consensus        86 ~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~---  161 (239)
                      ++... .+||||||.|.....+.   .+.+..+..|.|||++.+-+|+..-|+||.||.+||+.||+..|.+-.+..   
T Consensus       569 VNE~k~iLKLCDfGSA~~~~ene---itPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLr  645 (752)
T KOG0670|consen  569 VNESKNILKLCDFGSASFASENE---ITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLR  645 (752)
T ss_pred             eccCcceeeeccCcccccccccc---ccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHH
Confidence            98765 57999999986654433   234566788999999999999999999999999999999998887654422   


Q ss_pred             ---cccccch-------hhhhhhhhccc------------------------hhhhhhhhhhcCCCcHHHHHHHHHHHHH
Q 044155          162 ---DLVCPFS-------EYLKNCFEDNR------------------------FTEIVDHIVVEDVSSIEKEQQLHASAQV  207 (239)
Q Consensus       162 ---~~~~~~~-------~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l  207 (239)
                         +..++|+       +|....|..+-                        ..++....+.....+.........+.+|
T Consensus       646 l~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdL  725 (752)
T KOG0670|consen  646 LFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDL  725 (752)
T ss_pred             HHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHH
Confidence               1122221       11112221110                        0111111111111122223566788999


Q ss_pred             HhhhcCCCCCCCCCHHHHHH
Q 044155          208 TFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       208 i~~cl~~dp~~Rps~~ell~  227 (239)
                      +..|+..||++|.|..++|.
T Consensus       726 Ldkml~LdP~KRit~nqAL~  745 (752)
T KOG0670|consen  726 LDKMLILDPEKRITVNQALK  745 (752)
T ss_pred             HHHHhccChhhcCCHHHHhc
Confidence            99999999999999998875

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-27  Score=192.22  Aligned_cols=77  Identities=21%  Similarity=0.263  Sum_probs=68.7

Q ss_pred             CcccceeeEEEEe----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            4 HNHILKLIGCCLE----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         4 H~niv~l~~~~~~----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      -.+||+|++.|..    +.++|||+|++ |.+|..+|.....   +.++...+++|+.||+.||.|||.  ..+|+|.||
T Consensus       141 ~~~VV~LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~Y---rGlpl~~VK~I~~qvL~GLdYLH~--ecgIIHTDl  214 (590)
T KOG1290|consen  141 KKCVVQLLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNY---RGLPLSCVKEICRQVLTGLDYLHR--ECGIIHTDL  214 (590)
T ss_pred             CceeeeeeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCC---CCCcHHHHHHHHHHHHHHHHHHHH--hcCccccCC
Confidence            3579999999984    44789999999 5899898887765   679999999999999999999998  789999999


Q ss_pred             cCcceee
Q 044155           80 KTSCILF   86 (239)
Q Consensus        80 k~~nil~   86 (239)
                      ||+|||+
T Consensus       215 KPENvLl  221 (590)
T KOG1290|consen  215 KPENVLL  221 (590)
T ss_pred             Ccceeee
Confidence            9999998

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.6e-29  Score=190.47  Aligned_cols=213  Identities=20%  Similarity=0.293  Sum_probs=153.3

Q ss_pred             CCCcccceeeEEEEeCC-----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            2 MSHNHILKLIGCCLETP-----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~-----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      ++|.|++..+++..-..     ..++++|+++ .+|..++-+-     +.++.+.++.+.+||+.||.|||   +.+|.|
T Consensus       109 FkHdNVLSaLDILQPph~dfFqEiYV~TELmQ-SDLHKIIVSP-----Q~Ls~DHvKVFlYQILRGLKYLH---sA~ILH  179 (449)
T KOG0664|consen  109 FRHDNVLSLLDILQPANPSFFQELYVLTELMQ-SDLHKIIVSP-----QALTPDHVKVFVYQILRGLKYLH---TANILH  179 (449)
T ss_pred             hccccHHHHHHhcCCCCchHHHHHHHHHHHHH-hhhhheeccC-----CCCCcchhhhhHHHHHhhhHHHh---hcchhh
Confidence            57999999888765332     3578899997 8998888654     78899999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCCCcc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |||||.|.|+++|-.+||+|||+++..........+....|..|+|||.+.+.+ |+...||||.||++.|++.++..|+
T Consensus       180 RDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQ  259 (449)
T KOG0664|consen  180 RDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQ  259 (449)
T ss_pred             ccCCCccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhh
Confidence            999999999999999999999999876544333445666788999999998865 8999999999999999999887776


Q ss_pred             ccccccc------ccc-cchhhhhhhhhccchhhhhhhhhhcCCCcH---------HHHHHHHHHHHHHhhhcCCCCCCC
Q 044155          156 LVKDVHD------LVC-PFSEYLKNCFEDNRFTEIVDHIVVEDVSSI---------EKEQQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       156 ~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~li~~cl~~dp~~R  219 (239)
                      .......      +.+ |-.+-.+..-+. .    ..+++......+         .++....+-..+...++..||.+|
T Consensus       260 Aq~PiqQL~lItdLLGTPs~EaMr~ACEG-A----k~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkr  334 (449)
T KOG0664|consen  260 AAGPIEQLQMIIDLLGTPSQEAMKYACEG-A----KNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKR  334 (449)
T ss_pred             ccChHHHHHHHHHHhCCCcHHHHHHHhhh-h----HHHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCccc
Confidence            5433221      111 111111111110 0    011111111111         112333445678888999999999


Q ss_pred             CCHHHHHHH
Q 044155          220 PSMVDVAKK  228 (239)
Q Consensus       220 ps~~ell~~  228 (239)
                      .+.++.+.-
T Consensus       335 is~~~A~~~  343 (449)
T KOG0664|consen  335 ISVEEALQH  343 (449)
T ss_pred             ccHhhhccc
Confidence            998887653

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.94  E-value=1.9e-26  Score=174.48  Aligned_cols=166  Identities=30%  Similarity=0.490  Sum_probs=143.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|++|+++++++......++++|++.+++|.+++....    ..++...+..++.+++.++.+||   ..+++|+||+
T Consensus        47 ~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~lh---~~~~~H~dl~  119 (215)
T cd00180          47 KLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENE----GKLSEDEILRILLQILEGLEYLH---SNGIIHRDLK  119 (215)
T ss_pred             hcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence            3689999999999999889999999999899999987642    35788999999999999999999   8999999999


Q ss_pred             CcceeecC-CCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNE-ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |.||+++. ++.++|+|||.+........ ......+...|++||..... ..+.++|+|++|++++++           
T Consensus       120 ~~ni~~~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-----------  187 (215)
T cd00180         120 PENILLDSDNGKVKLADFGLSKLLTSDKS-LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-----------  187 (215)
T ss_pred             HhhEEEeCCCCcEEEecCCceEEccCCcc-hhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH-----------
Confidence            99999999 88999999998876543321 12234467889999998876 788999999999999998           


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                                                                 ..+.+++.+|+..+|.+||++.+++..
T Consensus       188 -------------------------------------------~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         188 -------------------------------------------PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             -------------------------------------------HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence                                                       457789999999999999999999864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=5.6e-27  Score=193.98  Aligned_cols=145  Identities=19%  Similarity=0.307  Sum_probs=125.6

Q ss_pred             CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcc
Q 044155            4 HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSC   83 (239)
Q Consensus         4 H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~n   83 (239)
                      .+-||+||-.|.+...+|+||+|++||++-.+|-+-     .-+++..++.++..+..|+.+.|   ..|++||||||+|
T Consensus       688 n~WVVrLyySFQDkdnLYFVMdYIPGGDmMSLLIrm-----gIFeE~LARFYIAEltcAiesVH---kmGFIHRDiKPDN  759 (1034)
T KOG0608|consen  688 NEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM-----GIFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDN  759 (1034)
T ss_pred             CcceEEEEEEeccCCceEEEEeccCCccHHHHHHHh-----ccCHHHHHHHHHHHHHHHHHHHH---hccceecccCccc
Confidence            456899999999999999999999999999888765     56888899999999999999999   9999999999999


Q ss_pred             eeecCCCceeEcccccccccC---------CCC--------------------------------cceeecccccccccC
Q 044155           84 ILFNEENVAKLFDFSLSISIP---------EGE--------------------------------THITDTVMGTLGYCA  122 (239)
Q Consensus        84 il~~~~~~~~l~dfg~~~~~~---------~~~--------------------------------~~~~~~~~~~~~y~a  122 (239)
                      |||+.+|.+||+|||++..+.         .+.                                ........||+-|+|
T Consensus       760 ILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyia  839 (1034)
T KOG0608|consen  760 ILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIA  839 (1034)
T ss_pred             eEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccC
Confidence            999999999999999865320         000                                001123569999999


Q ss_pred             ccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155          123 PEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus       123 PE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      ||++....++...|-||.|+++|||+.|+.||-.
T Consensus       840 pevl~r~g~~q~cdwws~gvil~em~~g~~pf~~  873 (1034)
T KOG0608|consen  840 PEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLA  873 (1034)
T ss_pred             hHHhcccCccccchhhHhhHHHHHHhhCCCCccC
Confidence            9999999999999999999999999999999853

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.94  E-value=2.9e-27  Score=193.60  Aligned_cols=142  Identities=23%  Similarity=0.310  Sum_probs=127.5

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEc-cCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESV-QYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~-~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .|+||++++++|++++.++++||-- ++.+|.+++...     .++++.++..|+.|++.|+++||   +.+|+|||||-
T Consensus       627 sH~NIlKlLdfFEddd~yyl~te~hg~gIDLFd~IE~k-----p~m~E~eAk~IFkQV~agi~hlh---~~~ivhrdikd  698 (772)
T KOG1152|consen  627 SHENILKLLDFFEDDDYYYLETEVHGEGIDLFDFIEFK-----PRMDEPEAKLIFKQVVAGIKHLH---DQGIVHRDIKD  698 (772)
T ss_pred             CccchhhhhheeecCCeeEEEecCCCCCcchhhhhhcc-----CccchHHHHHHHHHHHhcccccc---ccCceeccccc
Confidence            4999999999999999999999974 567889999876     67999999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcc-cccchhhhhhHHHHHhcCCCCcc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFN-EKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      +|+.++.+|.+||+|||.+.....+.   -..+.||..|.|||++.+.+|- ..-|||++|+++|.++...+||.
T Consensus       699 envivd~~g~~klidfgsaa~~ksgp---fd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  699 ENVIVDSNGFVKLIDFGSAAYTKSGP---FDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             ccEEEecCCeEEEeeccchhhhcCCC---cceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            99999999999999999886654332   4578899999999999988754 56899999999999999988875

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=2.6e-26  Score=168.92  Aligned_cols=212  Identities=15%  Similarity=0.171  Sum_probs=148.8

Q ss_pred             CCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            3 SHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         3 ~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      .||||++++++..+.  ....+|+|+..+.+...+.        ..++...+..++.+++.||.|+|   ++||.|||+|
T Consensus        91 gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~Dfk~ly--------~tl~d~dIryY~~elLkALdyCH---S~GImHRDVK  159 (338)
T KOG0668|consen   91 GGPNIIKLLDIVKDPESKTPSLIFEYVNNTDFKQLY--------PTLTDYDIRYYIYELLKALDYCH---SMGIMHRDVK  159 (338)
T ss_pred             CCCCeeehhhhhcCccccCchhHhhhhccccHHHHh--------hhhchhhHHHHHHHHHHHHhHHH---hcCcccccCC
Confidence            499999999998764  4677999999988887666        56788889999999999999999   9999999999


Q ss_pred             CcceeecCCC-ceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |.|++++... .++|+|||++.....+....  .+..+..|-.||.+... .+.-.-|+|||||++..|+..+.||-...
T Consensus       160 PhNvmIdh~~rkLrlIDWGLAEFYHp~~eYn--VRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~  237 (338)
T KOG0668|consen  160 PHNVMIDHELRKLRLIDWGLAEFYHPGKEYN--VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH  237 (338)
T ss_pred             cceeeechhhceeeeeecchHhhcCCCceee--eeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCC
Confidence            9999999754 68999999997765544322  34456678899988764 47888999999999999999999875333


Q ss_pred             cc-ccccccchhh----hhhhh--hccchhhhhhhhhhcC--------CCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          159 DV-HDLVCPFSEY----LKNCF--EDNRFTEIVDHIVVED--------VSSIEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       159 ~~-~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      +. ..+.......    +....  ...........++...        ..+....-.+++..+++...|.+|..+|+||.
T Consensus       238 dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTak  317 (338)
T KOG0668|consen  238 DNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAK  317 (338)
T ss_pred             CCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchH
Confidence            22 2111110000    00000  0000001111111111        11111123347788999999999999999999


Q ss_pred             HHHH
Q 044155          224 DVAK  227 (239)
Q Consensus       224 ell~  227 (239)
                      |.+.
T Consensus       318 Eam~  321 (338)
T KOG0668|consen  318 EAMA  321 (338)
T ss_pred             HHhc
Confidence            9875

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.93  E-value=4.3e-26  Score=171.52  Aligned_cols=202  Identities=18%  Similarity=0.226  Sum_probs=139.8

Q ss_pred             CCcccceeeEE-EEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            3 SHNHILKLIGC-CLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         3 ~H~niv~l~~~-~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .|.||+.-|++ |++.+.+++++||++.|+|.+-+...      .+-+....+++.|++.||.|||   +.++||||||.
T Consensus        79 ~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL~snv~~~------GigE~~~K~v~~ql~SAi~fMH---sknlVHRdlK~  149 (378)
T KOG1345|consen   79 PHQHIIDTYEVAFQTSDAYVFVQEFAPRGDLRSNVEAA------GIGEANTKKVFAQLLSAIEFMH---SKNLVHRDLKA  149 (378)
T ss_pred             cchhhhHHHHHHhhcCceEEEeeccCccchhhhhcCcc------cccHHHHHHHHHHHHHHHHHhh---ccchhhccccc
Confidence            48888888775 56667788999999999999888653      3567778899999999999999   99999999999


Q ss_pred             cceeecCCC--ceeEcccccccccCCCCcceeecccccccccCccccccC-----CcccccchhhhhhHHHHHhcCCCCc
Q 044155           82 SCILFNEEN--VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-----VFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        82 ~nil~~~~~--~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      +||||...+  .+|++|||.......-    .........|.+||.....     ...+.+|+|.||+++|.++||+.||
T Consensus       150 eNiLif~~df~rvKlcDFG~t~k~g~t----V~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PW  225 (378)
T KOG1345|consen  150 ENILIFDADFYRVKLCDFGLTRKVGTT----VKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPW  225 (378)
T ss_pred             ceEEEecCCccEEEeeecccccccCce----ehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcc
Confidence            999986543  7899999987543211    1122235668899976432     2567899999999999999999999


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      +.........-   +  ...+.....+     .+     +......++....+..+-+..+|++|=-..++......+
T Consensus       226 Qka~~~d~~Y~---~--~~~w~~rk~~-----~~-----P~~F~~fs~~a~r~Fkk~lt~~~~drcki~~~kk~rk~~  288 (378)
T KOG1345|consen  226 QKASIMDKPYW---E--WEQWLKRKNP-----AL-----PKKFNPFSEKALRLFKKSLTPRFKDRCKIWTAKKMRKCL  288 (378)
T ss_pred             hhhhccCchHH---H--HHHHhcccCc-----cC-----chhhcccCHHHHHHHHHhcCCcccccchhHHHHHHHHHH
Confidence            84332221111   1  1111111111     01     111124455667788888889999885555555544443

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=6.1e-26  Score=194.86  Aligned_cols=204  Identities=16%  Similarity=0.255  Sum_probs=155.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      .|+|||++.....+.+.....-.||||++ +|..++.+.     ..+....+..++.|++.|++|+|   ..|+.|||+|
T Consensus       377 ~l~h~~~~e~l~~~~~~~~~~~~mE~~~~-Dlf~~~~~~-----~~~~~~e~~c~fKqL~~Gv~y~h---~~GiahrdlK  447 (601)
T KOG0590|consen  377 SLSHPNIIETLDIVQEIDGILQSMEYCPY-DLFSLVMSN-----GKLTPLEADCFFKQLLRGVKYLH---SMGLAHRDLK  447 (601)
T ss_pred             cccCCchhhhHHHHhhcccchhhhhcccH-HHHHHHhcc-----cccchhhhhHHHHHHHHHHHHHH---hcCceeccCc
Confidence            47899998887777666555445999997 999999875     46788889999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc---ceeecccccccccCccccccCCccc-ccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET---HITDTVMGTLGYCAPEYMRTGVFNE-KSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~-~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      ++|+++..++.+||+|||.+..+.....   .......|+-+|+|||++.+..|.+ ..||||.|+++..|.+|+.||..
T Consensus       448 ~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~  527 (601)
T KOG0590|consen  448 LENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKV  527 (601)
T ss_pred             cccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCcccc
Confidence            9999999999999999999876643222   3455678999999999999888765 58999999999999999999864


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      -.......           .....   .................+...+.+|.+||+.||.+|.|++++++
T Consensus       528 a~~~~~~~-----------~~~~~---~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~  584 (601)
T KOG0590|consen  528 AKKSDNSF-----------KTNNY---SDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILN  584 (601)
T ss_pred             ccccccch-----------hhhcc---ccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhh
Confidence            33221111           00000   00000001111122356677889999999999999999999987

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.92  E-value=1.5e-24  Score=166.32  Aligned_cols=148  Identities=31%  Similarity=0.388  Sum_probs=126.7

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++|+|++++++++......++++|++++++|.+++.....    .++......++.+++.++.+||   ..+++|+|++|
T Consensus        54 ~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~di~~  126 (225)
T smart00221       54 LKHPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKGG----KLSEEEARFYLRQILEALEYLH---SLGIVHRDLKP  126 (225)
T ss_pred             CCCCChhhheeeeecCCceEEEEeccCCCCHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCH
Confidence            6899999999999988899999999998899999986521    1788999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCcccc-ccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYM-RTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      .||+++.++.++|+|||.+...............++..|++||.+ ....++.++|+|+||++++++++|+.||..
T Consensus       127 ~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      127 ENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             HHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            999999999999999998876643321112344567789999998 666788899999999999999999999854

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.91  E-value=8.1e-24  Score=174.75  Aligned_cols=211  Identities=28%  Similarity=0.422  Sum_probs=159.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe-eeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI-VFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i-~H~dl   79 (239)
                      ++.|.|+.+++|.+.+++..++|.+||..|+|.|.+....    ..+++.....++.+++.|+.|+|   ..++ .|+.+
T Consensus         3 ~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~----~~~d~~F~~s~~rdi~~Gl~ylh---~s~i~~hg~l   75 (484)
T KOG1023|consen    3 QLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNED----IKLDYFFILSFIRDISKGLAYLH---NSPIGYHGAL   75 (484)
T ss_pred             ccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccc----cCccHHHHHHHHHHHHHHHHHHh---cCcceeeeee
Confidence            4789999999999999999999999999999999998743    56888889999999999999999   5554 99999


Q ss_pred             cCcceeecCCCceeEcccccccccCCC-CcceeecccccccccCccccccCC-------cccccchhhhhhHHHHHhcCC
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEG-ETHITDTVMGTLGYCAPEYMRTGV-------FNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~-------~~~~~Di~slG~~l~~~~~g~  151 (239)
                      ++.|++++....+|++|||+....... .........-..-|.|||.+....       .+.+.||||||++++|+++..
T Consensus        76 ~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~  155 (484)
T KOG1023|consen   76 KSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRS  155 (484)
T ss_pred             ccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhcc
Confidence            999999999999999999997655321 111111222345699999987642       356799999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhh---cCCCc-HH-HHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVV---EDVSS-IE-KEQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~-~~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                      .||.........                 .+++..+..   ....+ .. .....+.+..++.+||..+|.+||+++++-
T Consensus       156 ~~~~~~~~~~~~-----------------~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~  218 (484)
T KOG1023|consen  156 GPFDLRNLVEDP-----------------DEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEIPEKRPSIEQIR  218 (484)
T ss_pred             CccccccccCCh-----------------HHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccChhhCccHHHHH
Confidence            998653322211                 111111111   00111 11 113445788999999999999999999999


Q ss_pred             HHHHHHHHh
Q 044155          227 KKLRQIYRS  235 (239)
Q Consensus       227 ~~L~~l~~~  235 (239)
                      ..+..+...
T Consensus       219 ~~~~~~~~~  227 (484)
T KOG1023|consen  219 SKLLTINKG  227 (484)
T ss_pred             hhhhhhccc
Confidence            988877654

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=3.4e-24  Score=169.23  Aligned_cols=197  Identities=16%  Similarity=0.202  Sum_probs=143.4

Q ss_pred             CCcccceeeEEEEe---------------------------CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHH
Q 044155            3 SHNHILKLIGCCLE---------------------------TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKI   55 (239)
Q Consensus         3 ~H~niv~l~~~~~~---------------------------~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~   55 (239)
                      +|||||++.+.|.+                           +...++||..++ .+|+.++-..      .........+
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~-~tLr~yl~~~------~~s~r~~~~~  346 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYR-QTLREYLWTR------HRSYRTGRVI  346 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcch-hhHHHHHhcC------CCchHHHHHH
Confidence            79999999998753                           235689999997 7999999764      3456677789


Q ss_pred             HHHHHHHHhHHhhCCCCCeeeccccCcceeec--CCC--ceeEcccccccccCCCC-----cceeecccccccccCcccc
Q 044155           56 AMDIVHALAYLHFGFPRPIVFRNFKTSCILFN--EEN--VAKLFDFSLSISIPEGE-----THITDTVMGTLGYCAPEYM  126 (239)
Q Consensus        56 ~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~--~~~--~~~l~dfg~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~  126 (239)
                      +.|+++|+.|||   .+|+.|||+|++|||+-  +|+  .+.++|||++.......     ....-...|.-..||||+.
T Consensus       347 laQlLEav~hL~---~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~  423 (598)
T KOG4158|consen  347 LAQLLEAVTHLH---KHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIA  423 (598)
T ss_pred             HHHHHHHHHHHH---HccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhh
Confidence            999999999999   99999999999999974  343  46789999875433211     1122344577788999988


Q ss_pred             ccCC------cccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHH
Q 044155          127 RTGV------FNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQ  200 (239)
Q Consensus       127 ~~~~------~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (239)
                      ...+      .-.++|.|+.|.+.||+++..+||..-....             .....        -.+..-+..++..
T Consensus       424 ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~-------------L~~r~--------Yqe~qLPalp~~v  482 (598)
T KOG4158|consen  424 TAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEML-------------LDTRT--------YQESQLPALPSRV  482 (598)
T ss_pred             hcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchhe-------------echhh--------hhhhhCCCCcccC
Confidence            6533      3468999999999999999999987532111             11101        1111122233466


Q ss_pred             HHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          201 LHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       201 ~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      ++.+.+++...|+.||++|+|++-....|.
T Consensus       483 pp~~rqlV~~lL~r~pskRvsp~iAANvl~  512 (598)
T KOG4158|consen  483 PPVARQLVFDLLKRDPSKRVSPNIAANVLN  512 (598)
T ss_pred             ChHHHHHHHHHhcCCccccCCccHHHhHHH
Confidence            678899999999999999999775555443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.90  E-value=2.4e-24  Score=162.59  Aligned_cols=198  Identities=18%  Similarity=0.287  Sum_probs=152.7

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      +.||||+.++|.|....+..++..|++.|||+..++....   .-.+..++.+++.+++.|++|||+. +.-|....|.+
T Consensus       244 fshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~t~---vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns  319 (448)
T KOG0195|consen  244 FSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQTS---VVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNS  319 (448)
T ss_pred             ecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcCcc---EEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhccc
Confidence            4799999999999999999999999999999999998754   4567788889999999999999953 33455557889


Q ss_pred             cceeecCCCceeEc--ccccccccCCCCcceeecccccccccCccccccCC---cccccchhhhhhHHHHHhcCCCCccc
Q 044155           82 SCILFNEENVAKLF--DFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV---FNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        82 ~nil~~~~~~~~l~--dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      ..++++++.+.+|+  |--++..        ......+++|++||.+...+   .-..+|+|||++++||+.|...||..
T Consensus       320 ~hvmidedltarismad~kfsfq--------e~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfad  391 (448)
T KOG0195|consen  320 KHVMIDEDLTARISMADTKFSFQ--------EVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFAD  391 (448)
T ss_pred             ceEEecchhhhheecccceeeee--------ccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhcccccccc
Confidence            99999999877764  4333211        11334578999999987544   34679999999999999999888754


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      ...                     ++...++..+..+...+...+..+..++.-|++.||.+||.++.++-.|++.
T Consensus       392 lsp---------------------mecgmkialeglrv~ippgis~hm~klm~icmnedpgkrpkfdmivpilekm  446 (448)
T KOG0195|consen  392 LSP---------------------MECGMKIALEGLRVHIPPGISRHMNKLMNICMNEDPGKRPKFDMIVPILEKM  446 (448)
T ss_pred             CCc---------------------hhhhhhhhhccccccCCCCccHHHHHHHHHHhcCCCCcCCCcceehhhHHHh
Confidence            332                     2333333333333334456677888999999999999999999998888764

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.89  E-value=1.9e-23  Score=165.53  Aligned_cols=142  Identities=26%  Similarity=0.304  Sum_probs=117.9

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .+.||+++.+.+..++...+|+||+++....++..        .+....+..++..++.||+++|   ..||+|||+||.
T Consensus        93 G~~ni~~~~~~~rnnd~v~ivlp~~~H~~f~~l~~--------~l~~~~i~~Yl~~ll~Al~~~h---~~GIvHRDiKps  161 (418)
T KOG1167|consen   93 GSDNIIKLNGCFRNNDQVAIVLPYFEHDRFRDLYR--------SLSLAEIRWYLRNLLKALAHLH---KNGIVHRDIKPS  161 (418)
T ss_pred             cchhhhcchhhhccCCeeEEEecccCccCHHHHHh--------cCCHHHHHHHHHHHHHHhhhhh---ccCccccCCCcc
Confidence            46799999999999999999999999999988884        4668899999999999999999   999999999999


Q ss_pred             ceeecCC-CceeEcccccccccC-----------------C------------------CCcc--------eeecccccc
Q 044155           83 CILFNEE-NVAKLFDFSLSISIP-----------------E------------------GETH--------ITDTVMGTL  118 (239)
Q Consensus        83 nil~~~~-~~~~l~dfg~~~~~~-----------------~------------------~~~~--------~~~~~~~~~  118 (239)
                      |+|.+.. +.-.|.|||++....                 .                  +...        ..-...||+
T Consensus       162 NFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~  241 (418)
T KOG1167|consen  162 NFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTP  241 (418)
T ss_pred             ccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCC
Confidence            9999865 345889999987110                 0                  0000        012346899


Q ss_pred             cccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcc
Q 044155          119 GYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus       119 ~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      +|+|||++.. ...+++.||||-|+++.-++++..||-
T Consensus       242 GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf  279 (418)
T KOG1167|consen  242 GFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFF  279 (418)
T ss_pred             CCCchHHHhhccCcCCccceeeccceeehhhccccccc
Confidence            9999999875 568899999999999999999999975

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.83  E-value=9.4e-20  Score=146.77  Aligned_cols=212  Identities=28%  Similarity=0.379  Sum_probs=152.2

Q ss_pred             CCCc-ccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MSHN-HILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~H~-niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +.|+ +|+++++.+......+++++++.++++.+++......  ..+.......++.|++.++.++|   ..+++|||+|
T Consensus        54 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~H---~~~~~hrd~k  128 (384)
T COG0515          54 LNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRK--GPLSESEALFILAQILSALEYLH---SKGIIHRDIK  128 (384)
T ss_pred             ccCCcceeeEEEEEecCCEEEEEEecCCCCcHHHHHHhcccc--cCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence            5666 7999999997777789999999999999777654211  16888999999999999999999   8999999999


Q ss_pred             CcceeecCCC-ceeEcccccccccCCCCcc-----eeecccccccccCcccccc---CCcccccchhhhhhHHHHHhcCC
Q 044155           81 TSCILFNEEN-VAKLFDFSLSISIPEGETH-----ITDTVMGTLGYCAPEYMRT---GVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        81 ~~nil~~~~~-~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      |+||+++..+ .++++|||.+.........     ......++..|+|||.+.+   ...+...|+||+|++++++++|.
T Consensus       129 p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~  208 (384)
T COG0515         129 PENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGL  208 (384)
T ss_pred             HHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCC
Confidence            9999999988 7999999998755433221     2356678999999999987   57889999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      .|+......    ............. ...     .................+.+++..|+..+|..|.+..+....
T Consensus       209 ~p~~~~~~~----~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         209 PPFEGEKNS----SATSQTLKIILEL-PTP-----SLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             CCCCCCCcc----ccHHHHHHHHHhc-CCc-----ccccccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            885433321    0000000000000 000     000000000001223567899999999999999998776653

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.83  E-value=9.3e-20  Score=147.44  Aligned_cols=206  Identities=19%  Similarity=0.200  Sum_probs=152.0

Q ss_pred             cccceeeEEE-EeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcc
Q 044155            5 NHILKLIGCC-LETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSC   83 (239)
Q Consensus         5 ~niv~l~~~~-~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~n   83 (239)
                      +++..+++.. ..+...++||+.+ |.+|.++......   ..++..+..+++.|++.+|.++|   +.|++||||||+|
T Consensus        80 ~~~~~~~~~G~~~~~~~~iVM~l~-G~sL~dl~~~~~~---~~fs~~T~l~ia~q~l~~l~~lH---~~G~iHRDiKp~N  152 (322)
T KOG1164|consen   80 SHFPKLLDHGRSTEDFNFIVMSLL-GPSLEDLRKRNPP---GRFSRKTVLRIAIQNLNALEDLH---SKGFIHRDIKPEN  152 (322)
T ss_pred             CCCCEEEEeccCCCceeEEEEecc-CccHHHHHHhCCC---CCcCHhHHHHHHHHHHHHHHHHH---hcCcccCCcCHHH
Confidence            4778888887 4666789999999 6999998866542   67999999999999999999999   9999999999999


Q ss_pred             eeecCC-----CceeEcccccccccC---CCC---cc--e-eecccccccccCccccccCCcccccchhhhhhHHHHHhc
Q 044155           84 ILFNEE-----NVAKLFDFSLSISIP---EGE---TH--I-TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        84 il~~~~-----~~~~l~dfg~~~~~~---~~~---~~--~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~  149 (239)
                      ++++..     ..+.+.|||+++...   ...   ..  . ...+.||..|+++....+...+.+.|+||++-++.++..
T Consensus       153 ~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~  232 (322)
T KOG1164|consen  153 FVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLK  232 (322)
T ss_pred             eeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhc
Confidence            999875     358999999998321   111   11  1 234569999999999999999999999999999999999


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||...........         +..     .........    .....+..+.++...+-+.+..++|....+...+
T Consensus       233 g~LPW~~~~~~~~~~~---------~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l  294 (322)
T KOG1164|consen  233 GSLPWEALEMTDLKSK---------FEK-----DPRKLLTDR----FGDLKPEEFAKILEYIDSLDYEDKPDYEKLAELL  294 (322)
T ss_pred             CCCCCccccccchHHH---------HHH-----Hhhhhcccc----ccCCChHHHHHHHHHhhccCCcCCCCHHHHHHHH
Confidence            9998855443222100         000     000000000    1112334556666666668999999999999988


Q ss_pred             HHHHHh
Q 044155          230 RQIYRS  235 (239)
Q Consensus       230 ~~l~~~  235 (239)
                      .++...
T Consensus       295 ~~~~~~  300 (322)
T KOG1164|consen  295 KDVFDS  300 (322)
T ss_pred             HHHHHh
Confidence            877654

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=7.6e-21  Score=155.08  Aligned_cols=123  Identities=28%  Similarity=0.395  Sum_probs=105.4

Q ss_pred             CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccc
Q 044155           19 IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFS   98 (239)
Q Consensus        19 ~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg   98 (239)
                      ..+|.|++|...+|.+.+.+....  ..-+....+.++.|++.|+.|      ++.+|+|+||.||.+..+..+||.|||
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~--e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgDFg  401 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTG--EERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGDFG  401 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcc--cccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhhhhhhh
Confidence            467899999999999999755433  567788899999999999997      688999999999999999999999999


Q ss_pred             cccccCCCC-----cceeecccccccccCccccccCCcccccchhhhhhHHHHHhc
Q 044155           99 LSISIPEGE-----THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        99 ~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~  149 (239)
                      +........     ....+.-.||..||+||.+.+..++.++||||||++++|+++
T Consensus       402 l~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~  457 (516)
T KOG1033|consen  402 LVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLI  457 (516)
T ss_pred             heeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHH
Confidence            976554332     123345579999999999999999999999999999999988

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.81  E-value=4.3e-19  Score=137.48  Aligned_cols=209  Identities=15%  Similarity=0.150  Sum_probs=158.9

Q ss_pred             cccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcce
Q 044155            5 NHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCI   84 (239)
Q Consensus         5 ~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~ni   84 (239)
                      +.|-..|-+..++....+|+|++ |.||+|++.=.+    .+++.++++.+|.|++.-+.++|   ++.++.|||||+|+
T Consensus        84 ~GIP~vYYFGqeG~~NiLVidLL-GPSLEDLFD~Cg----R~FSvKTV~miA~Qmi~rie~vH---~k~LIYRDIKPdNF  155 (449)
T KOG1165|consen   84 EGIPQVYYFGQEGKYNILVIDLL-GPSLEDLFDLCG----RRFSVKTVAMIAKQMITRIEYVH---EKDLIYRDIKPDNF  155 (449)
T ss_pred             CCCCceeeeccccchhhhhhhhh-CcCHHHHHHHhc----CcccHHhHHHHHHHHHHHHHHHH---hcceeecccCccce
Confidence            55666666666777889999999 699999988654    67999999999999999999999   99999999999999


Q ss_pred             eecCCC-----ceeEcccccccccCCCCcc------eeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCC
Q 044155           85 LFNEEN-----VAKLFDFSLSISIPEGETH------ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        85 l~~~~~-----~~~l~dfg~~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      ||+..+     .+.++|||+++...+..+.      -.....||..||+--...+...+.+-|+=|||=++++.+.|..|
T Consensus       156 LIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLP  235 (449)
T KOG1165|consen  156 LIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLP  235 (449)
T ss_pred             eecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCc
Confidence            998654     5789999999876443321      22456799999999999999999999999999999999999999


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      |+++......              .+++++.+.-...+.. ....+.+.++..-+...-+.+-.+-|..+-+..-+..++
T Consensus       236 WQGLKA~tnK--------------~kYeKIGe~Kr~T~i~-~Lc~g~P~efa~Yl~yvR~L~F~E~PDYdylr~Lf~dvl  300 (449)
T KOG1165|consen  236 WQGLKADTNK--------------EKYEKIGETKRSTPIE-VLCEGFPEEFATYLRYVRRLDFFETPDYDYLRKLFDDVL  300 (449)
T ss_pred             cccccCcchH--------------HHHHHhccccccCCHH-HHHhcCHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence            9876532211              1122222211111111 122356777888888888888888899888777777776


Q ss_pred             Hhh
Q 044155          234 RSL  236 (239)
Q Consensus       234 ~~~  236 (239)
                      ..+
T Consensus       301 dr~  303 (449)
T KOG1165|consen  301 DRL  303 (449)
T ss_pred             Hhc
Confidence            544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.79  E-value=2.9e-20  Score=162.58  Aligned_cols=197  Identities=22%  Similarity=0.260  Sum_probs=137.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .+|||.+++.-+.+...-.++|=+|.. -+|+|++...     .-+...+++-|+.|++.||.-+|   ..||+|+|||.
T Consensus        78 ~~~pn~lPfqk~~~t~kAAylvRqyvk-hnLyDRlSTR-----PFL~~iEKkWiaFQLL~al~qcH---~~gVcHGDIKs  148 (1431)
T KOG1240|consen   78 MKAPNCLPFQKVLVTDKAAYLVRQYVK-HNLYDRLSTR-----PFLVLIEKKWIAFQLLKALSQCH---KLGVCHGDIKS  148 (1431)
T ss_pred             hcCCcccchHHHHHhhHHHHHHHHHHh-hhhhhhhccc-----hHHHHHHHHHHHHHHHHHHHHHH---HcCcccccccc
Confidence            378888887766666666677777886 7999999765     33567788899999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccc--cCC-CC---cceeecccccccccCccccccCC-----------cccccchhhhhhHH
Q 044155           82 SCILFNEENVAKLFDFSLSIS--IPE-GE---THITDTVMGTLGYCAPEYMRTGV-----------FNEKSNVFSFSVFL  144 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~--~~~-~~---~~~~~~~~~~~~y~aPE~~~~~~-----------~~~~~Di~slG~~l  144 (239)
                      +|||++.=+.+.|+||..=+-  ++. +.   ...-.+...-..|.|||.+....           .+++.||||+||++
T Consensus       149 ENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCVi  228 (1431)
T KOG1240|consen  149 ENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVI  228 (1431)
T ss_pred             ceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHH
Confidence            999999999999999974221  111 10   01111222345799999885411           56789999999999


Q ss_pred             HHHhcC-CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          145 FELLTG-WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       145 ~~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      .|+++- +++|..           ++.+...-..   .......+.+.        .+..++.+|..|++.||++|.||+
T Consensus       229 aELf~Eg~PlF~L-----------SQL~aYr~~~---~~~~e~~Le~I--------ed~~~Rnlil~Mi~rdPs~RlSAe  286 (1431)
T KOG1240|consen  229 AELFLEGRPLFTL-----------SQLLAYRSGN---ADDPEQLLEKI--------EDVSLRNLILSMIQRDPSKRLSAE  286 (1431)
T ss_pred             HHHHhcCCCcccH-----------HHHHhHhccC---ccCHHHHHHhC--------cCccHHHHHHHHHccCchhccCHH
Confidence            999885 566542           1221111111   11111112111        123577899999999999999999


Q ss_pred             HHHHHH
Q 044155          224 DVAKKL  229 (239)
Q Consensus       224 ell~~L  229 (239)
                      +.++.-
T Consensus       287 dyL~~y  292 (1431)
T KOG1240|consen  287 DYLQKY  292 (1431)
T ss_pred             HHHHhh
Confidence            999863

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.78  E-value=1e-18  Score=129.96  Aligned_cols=206  Identities=17%  Similarity=0.173  Sum_probs=153.0

Q ss_pred             eeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecC
Q 044155            9 KLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNE   88 (239)
Q Consensus         9 ~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~   88 (239)
                      .+..+..+.....+||+.. |.||++++.-..    ..++.++.+.++-|++..+.|+|   .++.+||||||+|+|.+-
T Consensus        75 ~i~~y~~e~~ynvlVMdLL-GPsLEdLfnfC~----R~ftmkTvLMLaDQml~RiEyvH---~r~fiHRDIKPdNFLMGl  146 (341)
T KOG1163|consen   75 HIRHYGTEKDYNVLVMDLL-GPSLEDLFNFCS----RRFTMKTVLMLADQMLSRIEYVH---LRNFIHRDIKPDNFLMGL  146 (341)
T ss_pred             hhhhhccccccceeeeecc-CccHHHHHHHHh----hhhhHHhHHHHHHHHHHHHHHHH---hhccccccCCccceeecc
Confidence            3344555677788999999 699999887654    57899999999999999999999   999999999999999875


Q ss_pred             C---CceeEcccccccccCCCCc------ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           89 E---NVAKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        89 ~---~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      +   ..+.++|||+++......+      .-.....||..|.+--...+...+..-|+=|+|-++.++-.|..||+++..
T Consensus       147 grh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka  226 (341)
T KOG1163|consen  147 GRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKA  226 (341)
T ss_pred             ccccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccch
Confidence            4   4678999999987643322      122455689999998888888889999999999999999999999987653


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhhc
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLS  237 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~~  237 (239)
                      ....+              +.+.+...-..-.. .......|.++.-.+..|-...-.+-|...-+-+.+.-|...++
T Consensus       227 ~tk~Q--------------KyEkI~EkK~s~~i-e~LC~G~P~EF~myl~Y~R~L~F~E~Pdy~ylrqlFriLfr~ln  289 (341)
T KOG1163|consen  227 ATKKQ--------------KYEKISEKKMSTPI-EVLCKGFPAEFAMYLNYCRGLGFEEKPDYMYLRQLFRILFRTLN  289 (341)
T ss_pred             hhHHH--------------HHHHHHHhhcCCCH-HHHhCCCcHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHhhcc
Confidence            21111              11111111111111 11223567788888899999999999998877777776665543

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.77  E-value=1.5e-19  Score=150.22  Aligned_cols=178  Identities=22%  Similarity=0.245  Sum_probs=144.0

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||.+|++...+...+..++++++..+|.|...+...     ..++......+...++.+++++|   ..+++++|+|++
T Consensus        55 ~~~f~v~lhyafqt~~kl~l~ld~~rgg~lft~l~~~-----~~f~~~~~~~~~aelaLald~lh---~l~iiyrd~k~e  126 (612)
T KOG0603|consen   55 NTPFLVKLHYAFQTDGKLYLILDFLRGGDLFTRLSKE-----VMFDELDVAFYLAELALALDHLH---KLGIAYRDYKLE  126 (612)
T ss_pred             CCCceeeeeeeeccccchhHhhhhcccchhhhccccC-----CchHHHHHHHHHHHHHHHHhhcc---hhHHHHhccccc
Confidence            4899999999999999999999999998998777655     55677778888899999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      ||+++.+|.+++.|||+++..-+..     ..+|+..|||||+..  .....+|.||||++.++|++|..||.+      
T Consensus       127 nilld~~Ghi~~tdfglske~v~~~-----~~cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~------  193 (612)
T KOG0603|consen  127 NVLLLLEGHIKLTDFGLSKEAVKEK-----IACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG------  193 (612)
T ss_pred             ceeecccCccccCCchhhhHhHhhh-----hcccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch------
Confidence            9999999999999999987654332     227899999999998  566789999999999999999888753      


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                                         +....+....  ...+...+....+++..+...+|..|.-.
T Consensus       194 -------------------~~~~~Il~~~--~~~p~~l~~~a~~~~~~l~~r~p~nrLg~  232 (612)
T KOG0603|consen  194 -------------------DTMKRILKAE--LEMPRELSAEARSLFRQLFKRNPENRLGA  232 (612)
T ss_pred             -------------------HHHHHHhhhc--cCCchhhhHHHHHHHHHHHhhCHHHHhcc
Confidence                               2222222211  12234566677788888888898888744

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.75  E-value=7.4e-19  Score=137.19  Aligned_cols=164  Identities=19%  Similarity=0.246  Sum_probs=105.0

Q ss_pred             ceEEEEEccCCChhhhhhc---CCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcc
Q 044155           20 PILVFESVQYGTLWDRILG---APQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFD   96 (239)
Q Consensus        20 ~~iv~e~~~~~sL~~~l~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~d   96 (239)
                      .+++|+-+. ++|.+++..   .... ...+....++.+..|+++.+++||   ..|++|+||+|+|++++.+|.+.|+|
T Consensus       114 ~~~l~P~~~-~dL~~~~~~l~~~~~~-~~~l~~~arl~lT~Q~I~lvA~Lh---~~GlVHgdi~~~nfll~~~G~v~Lg~  188 (288)
T PF14531_consen  114 RFLLMPRAQ-GDLQDLVEALFSRAQT-HSPLAFAARLSLTVQMIRLVANLH---SYGLVHGDIKPENFLLDQDGGVFLGD  188 (288)
T ss_dssp             EEEEEE--S-EEHHHHHHHHHHHTTT-SHHHHHHHHHHHHHHHHHHHHHHH---HTTEEEST-SGGGEEE-TTS-EEE--
T ss_pred             hhhccchhh-hcHHHHHHHHhhcccc-cchhHHHHHHHHHHHHHHHHHHHh---hcceEecccceeeEEEcCCCCEEEcC
Confidence            467888886 899887552   2110 022334445666689999999999   89999999999999999999999999


Q ss_pred             cccccccCCCCcceeecccccccccCccccccC--------CcccccchhhhhhHHHHHhcCCCCcccccccccccccch
Q 044155           97 FSLSISIPEGETHITDTVMGTLGYCAPEYMRTG--------VFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFS  168 (239)
Q Consensus        97 fg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--------~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~  168 (239)
                      |+.........    .....+..|.+||.....        .++.+.|.|+||+++|.++++..||+..........   
T Consensus       189 F~~~~r~g~~~----~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~~~---  261 (288)
T PF14531_consen  189 FSSLVRAGTRY----RCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEADPEW---  261 (288)
T ss_dssp             GGGEEETTEEE----EGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTSGG---
T ss_pred             hHHHeecCcee----eccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCccccccc---
Confidence            98664432211    113345778999976442        478899999999999999999999875432111100   


Q ss_pred             hhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCC
Q 044155          169 EYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R  219 (239)
                                        ..     ..+. +.++.++.+|..+|+.+|.+|
T Consensus       262 ------------------~f-----~~C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  262 ------------------DF-----SRCR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             ------------------GG-----TTSS----HHHHHHHHHHT-SSGGGS
T ss_pred             ------------------cc-----hhcC-CcCHHHHHHHHHHccCCcccC
Confidence                              00     1122 667889999999999999988

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.75  E-value=4.2e-18  Score=138.26  Aligned_cols=110  Identities=16%  Similarity=0.081  Sum_probs=83.4

Q ss_pred             CCCCcccce-eeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILK-LIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~-l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++|+||+. +++    .+..++||||++|++|.. ....     .      ...++.|++.+|.|||   +++|+||||
T Consensus        77 ~L~h~~iv~~l~~----~~~~~LVmE~~~G~~L~~-~~~~-----~------~~~~~~~i~~aL~~lH---~~gIiHrDL  137 (365)
T PRK09188         77 TVRGIGVVPQLLA----TGKDGLVRGWTEGVPLHL-ARPH-----G------DPAWFRSAHRALRDLH---RAGITHNDL  137 (365)
T ss_pred             hccCCCCCcEEEE----cCCcEEEEEccCCCCHHH-hCcc-----c------hHHHHHHHHHHHHHHH---HCCCeeCCC
Confidence            478999985 443    245799999999999962 2110     1      1357889999999999   899999999


Q ss_pred             -cCcceeecCCCceeEcccccccccCCCCc-------ceeecccccccccCccccccC
Q 044155           80 -KTSCILFNEENVAKLFDFSLSISIPEGET-------HITDTVMGTLGYCAPEYMRTG  129 (239)
Q Consensus        80 -k~~nil~~~~~~~~l~dfg~~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~  129 (239)
                       ||+|||++.++.++|+|||+++.......       .......+++.|+|||.+...
T Consensus       138 ~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~~  195 (365)
T PRK09188        138 AKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTPR  195 (365)
T ss_pred             CCcceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccCChh
Confidence             99999999999999999999886643221       111345677889999998643

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.69  E-value=1.3e-16  Score=118.79  Aligned_cols=135  Identities=13%  Similarity=0.047  Sum_probs=96.9

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc-cC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF-KT   81 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl-k~   81 (239)
                      +|++|.+++++    +..+++|||+.|.+|.+....            ....++.|++.+|.++|   +.|++|+|| ||
T Consensus        60 ~~~~vP~ll~~----~~~~lvmeyI~G~~L~~~~~~------------~~~~~~~qi~~~L~~lH---~~GIvHrDL~kp  120 (218)
T PRK12274         60 GLPRTPRLLHW----DGRHLDRSYLAGAAMYQRPPR------------GDLAYFRAARRLLQQLH---RCGVAHNDLAKE  120 (218)
T ss_pred             CCCCCCEEEEE----cCEEEEEeeecCccHHhhhhh------------hhHHHHHHHHHHHHHHH---HCcCccCCCCCc
Confidence            45788888876    345899999998888654311            11246789999999999   999999999 79


Q ss_pred             cceeecCCCceeEcccccccccCCCCcc----e--------eecccccccccCccccccC-Ccc-cccchhhhhhHHHHH
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETH----I--------TDTVMGTLGYCAPEYMRTG-VFN-EKSNVFSFSVFLFEL  147 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~----~--------~~~~~~~~~y~aPE~~~~~-~~~-~~~Di~slG~~l~~~  147 (239)
                      .||+++.++.++|+|||++.........    .        ......++.+++|+..... ..+ ...+-++.|.-+|.+
T Consensus       121 ~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~  200 (218)
T PRK12274        121 ANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRF  200 (218)
T ss_pred             ceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHH
Confidence            9999999999999999999755432210    0        1122345666666644322 233 345556899999999


Q ss_pred             hcCCCCccc
Q 044155          148 LTGWDVSDL  156 (239)
Q Consensus       148 ~~g~~p~~~  156 (239)
                      +|++.+...
T Consensus       201 ~~~~~~~~~  209 (218)
T PRK12274        201 VTRRVLHWE  209 (218)
T ss_pred             HhccCCccc
Confidence            999877544

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.67  E-value=4.5e-17  Score=123.64  Aligned_cols=118  Identities=12%  Similarity=0.124  Sum_probs=87.6

Q ss_pred             CCCcccceeeEEEEeC--------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC
Q 044155            2 MSHNHILKLIGCCLET--------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP   73 (239)
Q Consensus         2 l~H~niv~l~~~~~~~--------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~   73 (239)
                      +.|++|.....++...        +..+++|||++|.+|.+...         ++.    ....+++.++..+|   ..|
T Consensus        92 L~~~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~---------~~~----~~~~~i~~~l~~lH---~~g  155 (232)
T PRK10359         92 VRSEGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPE---------ISE----DVKAKIKASIESLH---QHG  155 (232)
T ss_pred             HHHCCCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhh---------ccH----HHHHHHHHHHHHHH---HcC
Confidence            6799999998886633        35789999999999977632         222    23569999999999   999


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~  149 (239)
                      ++|+|++|.||+++.++ ++++|||...........             ........+..++|+||||+++.....
T Consensus       156 i~H~Dikp~Nili~~~g-i~liDfg~~~~~~e~~a~-------------d~~vler~y~~~~di~~lg~~~~~~~~  217 (232)
T PRK10359        156 MVSGDPHKGNFIVSKNG-LRIIDLSGKRCTAQRKAK-------------DRIDLERHYGIKNEIKDLGYYLLIYKK  217 (232)
T ss_pred             CccCCCChHHEEEeCCC-EEEEECCCcccccchhhH-------------HHHHHHhHhcccccccceeEeehHHHH
Confidence            99999999999999988 999999987544221110             002223345678999999998775543

>PRK10345 hypothetical protein; Provisional

Probab=99.62  E-value=1.7e-15  Score=114.44  Aligned_cols=87  Identities=15%  Similarity=0.026  Sum_probs=68.9

Q ss_pred             CCcccceeeEEEEeCC---C-ceEEEEE--ccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHH-hHHhhCCCCCee
Q 044155            3 SHNHILKLIGCCLETP---I-PILVFES--VQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL-AYLHFGFPRPIV   75 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~---~-~~iv~e~--~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~LH~~~~~~i~   75 (239)
                      .||||++++|+++++.   . +.+|+||  +.+++|.+++.+.      .+++.  ..++.+++.++ +|||   +++|+
T Consensus        59 ~h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~~------~~~e~--~~~~~~~L~~l~~yLh---~~~Iv  127 (210)
T PRK10345         59 DWSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQC------RYEED--VAQLRQLLKKLKRYLL---DNRIV  127 (210)
T ss_pred             CCcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHcc------cccHh--HHHHHHHHHHHHHHHH---HCCEe
Confidence            6899999999999863   3 3478999  5579999999653      24444  35577888777 9999   99999


Q ss_pred             eccccCcceeecCC----CceeEcccccc
Q 044155           76 FRNFKTSCILFNEE----NVAKLFDFSLS  100 (239)
Q Consensus        76 H~dlk~~nil~~~~----~~~~l~dfg~~  100 (239)
                      ||||||+|||++..    ..++|+|++.+
T Consensus       128 hrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345        128 TMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             ecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence            99999999999743    37999995543

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.62  E-value=8.6e-16  Score=114.83  Aligned_cols=74  Identities=16%  Similarity=0.255  Sum_probs=62.5

Q ss_pred             ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHH-hhCCCCCeeeccccCcceeecCCCceeEcccc
Q 044155           20 PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYL-HFGFPRPIVFRNFKTSCILFNEENVAKLFDFS   98 (239)
Q Consensus        20 ~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~L-H~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg   98 (239)
                      .++||||++++++.......     ..++......++.|++.+|.++ |   ..+++|+|+||+||+++ ++.++|+|||
T Consensus        92 ~~iVmE~i~g~~l~~~~~~~-----~~~~~~~~~~i~~qi~~~L~~l~H---~~giiHrDlkP~NIli~-~~~v~LiDFG  162 (190)
T cd05147          92 HVLVMEFIGDDGWAAPRLKD-----APLSESKARELYLQVIQIMRILYQ---DCRLVHADLSEYNLLYH-DGKLYIIDVS  162 (190)
T ss_pred             CEEEEEEeCCCCCcchhhhc-----CCCCHHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEE-CCcEEEEEcc
Confidence            48999999977665443322     4578889999999999999999 8   88999999999999998 4789999999


Q ss_pred             cccc
Q 044155           99 LSIS  102 (239)
Q Consensus        99 ~~~~  102 (239)
                      ++..
T Consensus       163 ~a~~  166 (190)
T cd05147         163 QSVE  166 (190)
T ss_pred             cccc
Confidence            9864

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.61  E-value=2.3e-16  Score=138.16  Aligned_cols=139  Identities=24%  Similarity=0.306  Sum_probs=105.8

Q ss_pred             HHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcc--------------eeecccccccccCcc
Q 044155           59 IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--------------ITDTVMGTLGYCAPE  124 (239)
Q Consensus        59 i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~--------------~~~~~~~~~~y~aPE  124 (239)
                      ++.++.|||   ..+|+|||+||+|.+|..-|.+|++|||+++...+....              ......||+.|.|||
T Consensus       152 mvla~Eylh---~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPe  228 (1205)
T KOG0606|consen  152 MVLAVEYLH---SYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPE  228 (1205)
T ss_pred             hhHHhHhhc---cCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChh
Confidence            378899999   999999999999999999999999999998764322110              123447899999999


Q ss_pred             ccccCCcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHH-HHHHHHH
Q 044155          125 YMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIE-KEQQLHA  203 (239)
Q Consensus       125 ~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  203 (239)
                      ++....|...+|-|++|+++|+.+.|+.||.+.                     ...+++...+......++ ....+++
T Consensus       229 VilrqgygkpvdwwamGiIlyeFLVgcvpffGd---------------------tpeelfg~visd~i~wpE~dea~p~E  287 (1205)
T KOG0606|consen  229 VILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD---------------------TPEELFGQVISDDIEWPEEDEALPPE  287 (1205)
T ss_pred             hhhhhccCCCccHHHHHHHHHHHheeeeeccCC---------------------CHHHHHhhhhhhhccccccCcCCCHH
Confidence            999999999999999999999999998887532                     222333333322221111 1244577


Q ss_pred             HHHHHhhhcCCCCCCCCC
Q 044155          204 SAQVTFECIKDSPADRPS  221 (239)
Q Consensus       204 ~~~li~~cl~~dp~~Rps  221 (239)
                      .++++.+.|+.+|..|.-
T Consensus       288 a~dli~~LL~qnp~~Rlg  305 (1205)
T KOG0606|consen  288 AQDLIEQLLRQNPLCRLG  305 (1205)
T ss_pred             HHHHHHHHHHhChHhhcc
Confidence            889999999999999973

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.61  E-value=1.7e-15  Score=113.54  Aligned_cols=91  Identities=15%  Similarity=0.149  Sum_probs=68.7

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CCeeecccc
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RPIVFRNFK   80 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~i~H~dlk   80 (239)
                      +.|++|.....+...  ..++||||++++++.......     ..++......++.|++.++.++|   . .|++|+|+|
T Consensus        76 l~~~~i~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~-----~~~~~~~~~~i~~~l~~~l~~lH---~~~givHrDlk  145 (190)
T cd05145          76 LYEAGVPVPEPILLK--KNVLVMEFIGDDGSPAPRLKD-----VPLEEEEAEELYEQVVEQMRRLY---QEAGLVHGDLS  145 (190)
T ss_pred             HHhCCCCCceEEEec--CCEEEEEEecCCCchhhhhhh-----ccCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCC
Confidence            345555333333222  248999999877554332222     34677888999999999999999   7 999999999


Q ss_pred             CcceeecCCCceeEccccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISI  103 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~  103 (239)
                      |+||+++ ++.++|+|||++...
T Consensus       146 P~NIll~-~~~~~liDFG~a~~~  167 (190)
T cd05145         146 EYNILYH-DGKPYIIDVSQAVEL  167 (190)
T ss_pred             hhhEEEE-CCCEEEEEcccceec
Confidence            9999998 788999999998655

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=1.4e-16  Score=137.37  Aligned_cols=199  Identities=18%  Similarity=0.253  Sum_probs=150.3

Q ss_pred             CcccceeeEEEEeCCCceEEEEEccCCChhhhh-hcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            4 HNHILKLIGCCLETPIPILVFESVQYGTLWDRI-LGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         4 H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      |+|++++++...+....++++++..++++.+.+ ....    ...+......++.|+..++.|+|.  ..++.|+|+||+
T Consensus        80 h~n~~~~~~~~~~~~~~~~~~~~s~g~~~f~~i~~~~~----~~~~~~~~~~~~~ql~s~l~~~H~--~~~~~h~~ikP~  153 (601)
T KOG0590|consen   80 HSNTVHMIEPSSSPRSYLLSLSYSDGGSLFSKISHPDS----TGTSSSSASRYLPQLNSGLSYLHP--ENGVTHRDIKPS  153 (601)
T ss_pred             cccccccCCccCCCcccccccCcccccccccccccCCc----cCCCCcchhhhhhhhccCccccCc--ccccccCCCCCc
Confidence            999999999999999999999999999998888 4331    245566777889999999999996  678999999999


Q ss_pred             ceeecCCC-ceeEcccccccccCC--CCcceeecccc-cccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           83 CILFNEEN-VAKLFDFSLSISIPE--GETHITDTVMG-TLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        83 nil~~~~~-~~~l~dfg~~~~~~~--~~~~~~~~~~~-~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |.+++..+ ..+++|||++.....  +.........| ++.|+|||...+. -.....|+||.|+++.-+++|..|++..
T Consensus       154 n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~  233 (601)
T KOG0590|consen  154 NSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFP  233 (601)
T ss_pred             cchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccc
Confidence            99999999 999999999987654  33334455667 9999999998874 4677899999999999999999887654


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                      .........+.+                ..  ................+++..++..+|+.|.+.+++.
T Consensus       234 ~~~~~~~~~~~~----------------~~--~~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~  284 (601)
T KOG0590|consen  234 SRKDGRYSSWKS----------------NK--GRFTQLPWNSISDQAHDLLHKILKENPSNRLSIEELK  284 (601)
T ss_pred             ccccccceeecc----------------cc--cccccCccccCChhhhhcccccccCCchhcccccccc
Confidence            433221111000                00  0000000113344566788888989999999988764

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.59  E-value=5.5e-16  Score=120.40  Aligned_cols=200  Identities=19%  Similarity=0.258  Sum_probs=136.0

Q ss_pred             CCCCcccceeeEEEEeC-----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~-----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      |+-|.|||++..|+.+.     ....+++||+..|++.+++++..... ..+..+.-.+|+.||+.||.|||+ ++..++
T Consensus       123 qlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~-~a~~~~~wkkw~tqIlsal~yLhs-~~Ppii  200 (458)
T KOG1266|consen  123 QLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQ-KALFQKAWKKWCTQILSALSYLHS-CDPPII  200 (458)
T ss_pred             HHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhh-hhhhHHHHHHHHHHHHhhhhhhhc-cCCccc
Confidence            35699999999988654     35789999999999999998754322 567788888999999999999995 378899


Q ss_pred             eccccCcceeecCCCceeEcccccccccC--CCC-cceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCC
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIP--EGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~--~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      |+++..+.|.+..++-+|+.--.-.....  ... ..-.....+-++|.|||.=...+.+.++|||+||....+|.-+..
T Consensus       201 hgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEi  280 (458)
T KOG1266|consen  201 HGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEI  280 (458)
T ss_pred             cCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHhee
Confidence            99999999999988877765321110000  000 001122335678999998777778889999999999999877632


Q ss_pred             CcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      -.....                 ..-...+.+...+....+        ..-..++..|++-.|..||+|++++.
T Consensus       281 q~tnse-----------------S~~~~ee~ia~~i~~len--------~lqr~~i~kcl~~eP~~rp~ar~llf  330 (458)
T KOG1266|consen  281 QSTNSE-----------------SKVEVEENIANVIIGLEN--------GLQRGSITKCLEGEPNGRPDARLLLF  330 (458)
T ss_pred             ccCCCc-----------------ceeehhhhhhhheeeccC--------ccccCcCcccccCCCCCCcchhhhhc
Confidence            100000                 000011122221111111        11246788999999999999998874

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=1.1e-14  Score=129.06  Aligned_cols=128  Identities=20%  Similarity=0.192  Sum_probs=106.5

Q ss_pred             CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCC-------
Q 044155           17 TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEE-------   89 (239)
Q Consensus        17 ~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~-------   89 (239)
                      .+.-++|+||.+.|||.+++...     +.+++-....++.|++.-+.+||   ..+|+|+||||+|+++...       
T Consensus       766 ~~~S~lv~ey~~~Gtlld~~N~~-----~~m~e~lv~~~~~qml~ive~lH---~~~IIHgDiKPDNfll~~~~~~~~~~  837 (974)
T KOG1166|consen  766 QNASVLVSEYSPYGTLLDLINTN-----KVMDEYLVMFFSCQMLRIVEHLH---AMGIIHGDIKPDNFLLRREICADSDS  837 (974)
T ss_pred             CCcceeeeeccccccHHHhhccC-----CCCCchhhhHHHHHHHHHHHHHH---hcceecccCCcceeEeecccCCCCcc
Confidence            45568899999999999999744     66888899999999999999999   9999999999999998643       


Q ss_pred             CceeEcccccccccCC-CCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCC
Q 044155           90 NVAKLFDFSLSISIPE-GETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        90 ~~~~l~dfg~~~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      ..++|+|||.+.-+.- .....-....++-.+-.+|+..+.+|+...|-|.|+.+++.|+.|+.
T Consensus       838 ~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  838 KGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             cceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence            3589999998865421 11123345557778889999999999999999999999999999954

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.47  E-value=1.5e-13  Score=104.61  Aligned_cols=88  Identities=19%  Similarity=0.223  Sum_probs=74.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      +.|++|.....++.+....+++|||++|++|.+.+...     .   . ....++.+++.+|.++|   ..+++|+|++|
T Consensus        56 l~~~~i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~-----~---~-~~~~i~~~i~~~l~~lH---~~~i~H~Dl~p  123 (211)
T PRK14879         56 ARKAGVNVPAVYFVDPENFIIVMEYIEGEPLKDLINSN-----G---M-EELELSREIGRLVGKLH---SAGIIHGDLTT  123 (211)
T ss_pred             HHHCCCCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhc-----c---H-HHHHHHHHHHHHHHHHH---hCCcccCCCCc
Confidence            45777776666777777889999999999999988643     1   1 77889999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~  102 (239)
                      .||+++ ++.++++|||.+..
T Consensus       124 ~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879        124 SNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             ccEEEE-CCCEEEEECCcccC
Confidence            999999 77899999998754

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.45  E-value=2.5e-13  Score=117.20  Aligned_cols=85  Identities=18%  Similarity=0.183  Sum_probs=74.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|++++..+.++.+....++||||+++++|.+++.             ....++.+++.+|.+||   +.+++|+|+|
T Consensus       392 ~l~~~~i~~p~~~~~~~~~~~lv~E~~~g~~L~~~l~-------------~~~~~~~~i~~~L~~lH---~~giiHrDlk  455 (535)
T PRK09605        392 EARRAGVPTPVIYDVDPEEKTIVMEYIGGKDLKDVLE-------------GNPELVRKVGEIVAKLH---KAGIVHGDLT  455 (535)
T ss_pred             hhcccCCCeeEEEEEeCCCCEEEEEecCCCcHHHHHH-------------HHHHHHHHHHHHHHHHH---hCCCccCCCC
Confidence            3678999888777777778899999999999988874             23568899999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~  102 (239)
                      |+||++ .++.++|+|||++..
T Consensus       456 p~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        456 TSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             hHHEEE-ECCcEEEEeCccccc
Confidence            999999 577899999999854

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.40  E-value=6.6e-13  Score=100.17  Aligned_cols=85  Identities=20%  Similarity=0.217  Sum_probs=68.6

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      +.|+++.....++......++||||++|++|.+.+...     ..       .++.+++.+|.++|   +.+++|+|++|
T Consensus        54 l~~~~i~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~-----~~-------~~~~~i~~~l~~lH---~~gi~H~Dl~~  118 (199)
T TIGR03724        54 ARKAGVNTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEG-----ND-------ELLREIGRLVGKLH---KAGIVHGDLTT  118 (199)
T ss_pred             HHHCCCCCCEEEEEECCCCEEEEEEECCccHHHHHhhc-----HH-------HHHHHHHHHHHHHH---HCCeecCCCCc
Confidence            34555544444555666779999999999998887542     11       67899999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~  102 (239)
                      .||+++ ++.++++|||.+..
T Consensus       119 ~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724       119 SNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             ceEEEE-CCcEEEEECCCCcC
Confidence            999999 78899999998754

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.40  E-value=8.7e-13  Score=102.11  Aligned_cols=88  Identities=16%  Similarity=0.152  Sum_probs=67.4

Q ss_pred             CCCccc--ceeeEEEEeCC----CceEEEEEccC-CChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            2 MSHNHI--LKLIGCCLETP----IPILVFESVQY-GTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         2 l~H~ni--v~l~~~~~~~~----~~~iv~e~~~~-~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      |.|++|  ...+++.....    ..++|||++++ .+|.+++...      .++..    .+.+++.++.+||   +.||
T Consensus        97 L~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~~------~l~~~----~~~~i~~~l~~lH---~~GI  163 (239)
T PRK01723         97 LYEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQEA------PLSEE----QWQAIGQLIARFH---DAGV  163 (239)
T ss_pred             HHhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHhcC------CCCHH----HHHHHHHHHHHHH---HCCC
Confidence            455554  56666644322    23599999996 6898887542      34443    3578999999999   9999


Q ss_pred             eeccccCcceeecCCCceeEcccccccc
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~  102 (239)
                      +|+||||.|||++.++.++|+|||.+..
T Consensus       164 ~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        164 YHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             CCCCCCchhEEEcCCCCEEEEECCCccc
Confidence            9999999999999988999999998754

>smart00090 RIO RIO-like kinase

Probab=99.39  E-value=1.2e-12  Score=101.20  Aligned_cols=75  Identities=19%  Similarity=0.169  Sum_probs=62.1

Q ss_pred             CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC-eeeccccCcceeecCCCceeEccc
Q 044155           19 IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP-IVFRNFKTSCILFNEENVAKLFDF   97 (239)
Q Consensus        19 ~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~-i~H~dlk~~nil~~~~~~~~l~df   97 (239)
                      ..++||||+++.+|.......     ..........++.|++.++.+||   ..+ ++|+|+||+||+++ ++.++++||
T Consensus       122 ~~~lV~E~~~g~~L~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~LH---~~g~iiH~Dikp~NIli~-~~~i~LiDF  192 (237)
T smart00090      122 RNVLVMEFIGGDGLPAPRLKD-----VEPEEEEEFELYDDILEEMRKLY---KEGELVHGDLSEYNILVH-DGKVVIIDV  192 (237)
T ss_pred             CceEEEEEecCCccccccccc-----CCcchHHHHHHHHHHHHHHHHHH---hcCCEEeCCCChhhEEEE-CCCEEEEEC
Confidence            358999999987876654322     23455667889999999999999   899 99999999999999 788999999


Q ss_pred             ccccc
Q 044155           98 SLSIS  102 (239)
Q Consensus        98 g~~~~  102 (239)
                      |.+..
T Consensus       193 g~a~~  197 (237)
T smart00090      193 SQSVE  197 (237)
T ss_pred             hhhhc
Confidence            98754

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.34  E-value=3e-12  Score=108.20  Aligned_cols=135  Identities=19%  Similarity=0.175  Sum_probs=102.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      .|+||||++++..++..+..|+|+|.+.  .|..+++.        +.......-+.||+.||.|||.  +.+++|+++.
T Consensus        65 tlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~--------l~~~~v~~Gl~qIl~AL~FL~~--d~~lvHgNv~  132 (690)
T KOG1243|consen   65 TLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKE--------LGKEEVCLGLFQILAALSFLND--DCNLVHGNVC  132 (690)
T ss_pred             hccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHH--------hHHHHHHHHHHHHHHHHHHHhc--cCCeeeccEe
Confidence            3799999999999999999999999985  78788854        4467777889999999999985  7899999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcC
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG  150 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g  150 (239)
                      -+.|+++..|..||++|.++........ .......--.|..|+.+....  -..|.|.||+++++++.|
T Consensus       133 ~~SVfVn~~GeWkLggle~v~~~~~~~~-~~~~~~~~~s~~~P~~~~~s~--~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  133 KDSVFVNESGEWKLGGLELVSKASGFNA-PAKSLYLIESFDDPEEIDPSE--WSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             eeeEEEcCCCcEEEeeeEEEeccccCCc-ccccchhhhcccChhhcCccc--cchhhhhHHHHHHHHhCc
Confidence            9999999999999999987644321110 011111111244555433222  235999999999999999

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=5.4e-12  Score=105.36  Aligned_cols=193  Identities=20%  Similarity=0.202  Sum_probs=138.3

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHH----HHhHHhhCCCCCeeecc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH----ALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~----~l~~LH~~~~~~i~H~d   78 (239)
                      .|+|.++.+..++.++..++-+|++. .+|.++.+...    .-++.........+...    |+.++|   ..+++|.|
T Consensus       176 ~~~~~v~~~~~~e~~~~lfiqtE~~~-~sl~~~~~~~~----~~~p~~~l~~~~~~~~~~~~~al~~~h---s~~~~~~~  247 (524)
T KOG0601|consen  176 SHENPVRDSPAWEGSGILFIQTELCG-ESLQSYCHTPC----NFLPDNLLWNSLRDWLSRDVTALSHLH---SNNIVHDD  247 (524)
T ss_pred             ccccccccCcccccCCcceeeecccc-chhHHhhhccc----ccCCchhhhhHHhhhhhcccccccccC---CCcccccc
Confidence            58888998888999999999999996 88888887653    23667777777888888    999999   99999999


Q ss_pred             ccCcceeecCC-CceeEcccccccccCCCCc---ceeecc-cccccccCccccccCCcccccchhhhhhHHHHHhcCCCC
Q 044155           79 FKTSCILFNEE-NVAKLFDFSLSISIPEGET---HITDTV-MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        79 lk~~nil~~~~-~~~~l~dfg~~~~~~~~~~---~~~~~~-~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      +||+||....+ ...+++|||+......+..   ...... .+...|++||..+ ..++...|||++|.++.+...+...
T Consensus       248 ~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~-~l~~~~~di~sl~ev~l~~~l~~~~  326 (524)
T KOG0601|consen  248 LKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLN-GLATFASDIFSLGEVILEAILGSHL  326 (524)
T ss_pred             cchhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhc-cccchHhhhcchhhhhHhhHhhccc
Confidence            99999999999 7889999998776544321   111122 5677899999876 5567899999999999999888544


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                      .....                  ...|.......    .........+.++...+.+|++.+|-.|++++.+.
T Consensus       327 ~~~g~------------------~~~W~~~r~~~----ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~  377 (524)
T KOG0601|consen  327 PSVGK------------------NSSWSQLRQGY----IPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILT  377 (524)
T ss_pred             ccCCC------------------CCCcccccccc----CchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHh
Confidence            22110                  01111111100    01111123334455588899999999999987654

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.24  E-value=2.2e-11  Score=91.89  Aligned_cols=72  Identities=13%  Similarity=0.165  Sum_probs=60.4

Q ss_pred             CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEccc
Q 044155           18 PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDF   97 (239)
Q Consensus        18 ~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~df   97 (239)
                      ...++||||+++++|......           .....++.+++.++.++|   ..+++|+|+||.||+++.++.++|+||
T Consensus       104 ~~~~lv~e~~~g~~L~~~~~~-----------~~~~~~~~~i~~~l~~lh---~~gi~H~Dl~p~Nill~~~~~~~liDf  169 (198)
T cd05144         104 NRHAVVMEYIDGVELYRVRVL-----------EDPEEVLDEILEEIVKAY---KHGIIHGDLSEFNILVDDDEKIYIIDW  169 (198)
T ss_pred             CCceEEEEEeCCcchhhcccc-----------ccHHHHHHHHHHHHHHHH---HCCCCcCCCCcccEEEcCCCcEEEEEC
Confidence            456899999999888654321           234567899999999999   899999999999999999999999999


Q ss_pred             cccccc
Q 044155           98 SLSISI  103 (239)
Q Consensus        98 g~~~~~  103 (239)
                      |.+...
T Consensus       170 g~~~~~  175 (198)
T cd05144         170 PQMVST  175 (198)
T ss_pred             CccccC
Confidence            988544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.20  E-value=5.1e-11  Score=85.37  Aligned_cols=86  Identities=16%  Similarity=0.135  Sum_probs=70.0

Q ss_pred             cccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcce
Q 044155            5 NHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCI   84 (239)
Q Consensus         5 ~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~ni   84 (239)
                      .++.+++++....+..++++||+++.++..+            +......++.+++.+++.+|.....+++|+|++|.||
T Consensus        53 ~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~------------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Ni  120 (155)
T cd05120          53 LPVPKVLASGESDGWSYLLMEWIEGETLDEV------------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNI  120 (155)
T ss_pred             CCCCeEEEEcCCCCccEEEEEecCCeecccC------------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceE
Confidence            4778888888777789999999987666433            3455667789999999999942225799999999999


Q ss_pred             eecCCCceeEcccccccc
Q 044155           85 LFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        85 l~~~~~~~~l~dfg~~~~  102 (239)
                      +++..+.++++|||.+..
T Consensus       121 l~~~~~~~~l~Df~~~~~  138 (155)
T cd05120         121 LVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             EEECCcEEEEEecccccC
Confidence            999988999999998754

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=99.20  E-value=3.9e-10  Score=91.24  Aligned_cols=210  Identities=15%  Similarity=0.162  Sum_probs=138.0

Q ss_pred             EEEEEccC-CChhhhhhcC-CCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEccccc
Q 044155           22 LVFESVQY-GTLWDRILGA-PQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL   99 (239)
Q Consensus        22 iv~e~~~~-~sL~~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~   99 (239)
                      +.|..+.+ ..+.+++... +..+.....|...++.+..++.+.+.||   +.|.+-+|+.++|+|+++++.+.+.|=..
T Consensus        87 flmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH---~~Gh~vGDVn~~~~lVsd~~~V~LVdsDs  163 (637)
T COG4248          87 FLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLH---EHGHVVGDVNQNSFLVSDDSKVVLVDSDS  163 (637)
T ss_pred             EecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHH---hcCCcccccCccceeeecCceEEEEcccc
Confidence            44555433 2333333322 2233467789999999999999999999   99999999999999999999999987443


Q ss_pred             ccccCCCCcceeecccccccccCccccc-----cCCcccccchhhhhhHHHHHhcC-CCCcccccccccccccch-hhhh
Q 044155          100 SISIPEGETHITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELLTG-WDVSDLVKDVHDLVCPFS-EYLK  172 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~~l~~~~~g-~~p~~~~~~~~~~~~~~~-~~~~  172 (239)
                      -+.-..+  .......|...|++||.-.     +...+...|.|.||+++++++.| +.||.+.........+.. ....
T Consensus       164 fqi~~ng--~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~  241 (637)
T COG4248         164 FQINANG--TLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAH  241 (637)
T ss_pred             eeeccCC--ceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhc
Confidence            2221122  1233556788999999654     33466789999999999998776 899988766544433332 1111


Q ss_pred             hhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCC--CCCCCCHHHHHHHHHHHHHhhcCC
Q 044155          173 NCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDS--PADRPSMVDVAKKLRQIYRSLSCN  239 (239)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~d--p~~Rps~~ell~~L~~l~~~~~~~  239 (239)
                      ..|...+  +. ..-.........-.-.++++..+..+|+...  +.-|||++..+..|.++-.++..|
T Consensus       242 g~f~ya~--~~-~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al~~~L~~C  307 (637)
T COG4248         242 GRFAYAS--DQ-RRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAKAWVAALDALRQQLKKC  307 (637)
T ss_pred             ceeeech--hc-cCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHhhhhh
Confidence            1111100  00 0001111111122345677889999998654  568999999999999998887654

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.11  E-value=1.4e-10  Score=86.49  Aligned_cols=74  Identities=16%  Similarity=0.198  Sum_probs=58.0

Q ss_pred             CceEEEEEccCCChhhh-hhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CCeeeccccCcceeecCCCceeEcc
Q 044155           19 IPILVFESVQYGTLWDR-ILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RPIVFRNFKTSCILFNEENVAKLFD   96 (239)
Q Consensus        19 ~~~iv~e~~~~~sL~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~i~H~dlk~~nil~~~~~~~~l~d   96 (239)
                      ..++||||++++++... +...      .. ......++.+++.++.++|   . .+++|+|+||+||+++ ++.++++|
T Consensus        89 ~~~lv~e~~~g~~~~~~~l~~~------~~-~~~~~~~~~~~~~~l~~lh---~~~~ivH~Dl~p~Nili~-~~~~~liD  157 (187)
T cd05119          89 RHVLVMEFIGGDGIPAPRLKDV------RL-LEDPEELYDQILELMRKLY---REAGLVHGDLSEYNILVD-DGKVYIID  157 (187)
T ss_pred             CCEEEEEEeCCCCccChhhhhh------hh-cccHHHHHHHHHHHHHHHh---hccCcCcCCCChhhEEEE-CCcEEEEE
Confidence            45899999997544221 1111      01 1566788999999999999   7 9999999999999999 88999999


Q ss_pred             ccccccc
Q 044155           97 FSLSISI  103 (239)
Q Consensus        97 fg~~~~~  103 (239)
                      ||.+...
T Consensus       158 fg~a~~~  164 (187)
T cd05119         158 VPQAVEI  164 (187)
T ss_pred             Ccccccc
Confidence            9998544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.05  E-value=8.3e-11  Score=100.02  Aligned_cols=150  Identities=17%  Similarity=0.228  Sum_probs=99.8

Q ss_pred             HHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcc--------eeecccccccccCccccc
Q 044155           56 AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--------ITDTVMGTLGYCAPEYMR  127 (239)
Q Consensus        56 ~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~--------~~~~~~~~~~y~aPE~~~  127 (239)
                      +.+++.|+.|+|.  +.++||+++.|++|.++..+.+||+.|+++.........        ......-..-|.|||++.
T Consensus       105 l~~v~dgl~flh~--sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  105 LGNVADGLAFLHR--SAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhcccchhhhhcc--CcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            4556689999996  778999999999999999999999999876544321100        011122345799999999


Q ss_pred             cCCcccccchhhhhhHHHHHhcC-CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHH
Q 044155          128 TGVFNEKSNVFSFSVFLFELLTG-WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQ  206 (239)
Q Consensus       128 ~~~~~~~~Di~slG~~l~~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (239)
                      +.-.+.++|+||+|+++|.+..| +..+..........                   ......+..........+.++.+
T Consensus       183 ~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~-------------------~~~~~~~~~~~~~s~~~p~el~~  243 (700)
T KOG2137|consen  183 GTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYS-------------------FSRNLLNAGAFGYSNNLPSELRE  243 (700)
T ss_pred             cccccccccceeeeeEEEEEecCCcchhhccCCcchhh-------------------hhhcccccccccccccCcHHHHH
Confidence            88888999999999999999954 33332211100000                   00000000001111356677888


Q ss_pred             HHhhhcCCCCCCCCCHHHHH
Q 044155          207 VTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       207 li~~cl~~dp~~Rps~~ell  226 (239)
                      -+..++..++..||++.++.
T Consensus       244 ~l~k~l~~~~~~rp~~~~l~  263 (700)
T KOG2137|consen  244 SLKKLLNGDSAVRPTLDLLL  263 (700)
T ss_pred             HHHHHhcCCcccCcchhhhh
Confidence            88899999999999776654

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.05  E-value=7.7e-11  Score=98.54  Aligned_cols=189  Identities=19%  Similarity=0.124  Sum_probs=130.7

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .|.+++..+..+......++=-|||.++++.....-.     ..+.....+++..|++.++.++|   ...++|+|+||.
T Consensus       324 ~~~~~~g~~~~W~~~r~~~ip~e~~~~~s~~l~~~~~-----~~~d~~~~~~~~~q~~~~l~~i~---s~~~~~~d~~ps  395 (524)
T KOG0601|consen  324 SHLPSVGKNSSWSQLRQGYIPLEFCEGGSSSLRSVTS-----QMLDEDPRLRLTAQILTALNVIH---SKLFVHLDVKPS  395 (524)
T ss_pred             cccccCCCCCCccccccccCchhhhcCcchhhhhHHH-----HhcCcchhhhhHHHHHhcccccc---chhhhccccccc
Confidence            4667777777776666677889999999987766322     55778888899999999999999   999999999999


Q ss_pred             ceeecCC-CceeEcccccccccCCCCcceeeccccccccc--CccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           83 CILFNEE-NVAKLFDFSLSISIPEGETHITDTVMGTLGYC--APEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        83 nil~~~~-~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~--aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||++..+ +..++.|||.+..+....    ....+.-++.  ++.......+..++|++|||.-+.+..++.........
T Consensus       396 ni~i~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~  471 (524)
T KOG0601|consen  396 NILISNDGFFSKLGDFGCWTRLAFSS----GVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQ  471 (524)
T ss_pred             ceeeccchhhhhccccccccccceec----ccccccccccccchhhccccccccccccccccccccccccCcccCccccc
Confidence            9999987 677899999875432211    1112222333  45555567788999999999999999998543221110


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                                          +..+.    .+... ..+ .....+..+...++..++..||++.++....
T Consensus       472 --------------------~~~i~----~~~~p-~~~-~~~~~~q~~~kv~~~~~~~~~~l~~~l~~~~  515 (524)
T KOG0601|consen  472 --------------------SLTIR----SGDTP-NLP-GLKLQLQVLLKVMINPDRKRRPSAVELSLHS  515 (524)
T ss_pred             --------------------ceeee----ccccc-CCC-chHHhhhhhhhhhcCCccccchhhhhhcccc
Confidence                                00000    01000 001 2225566777788999999999988876544

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.02  E-value=1.1e-10  Score=103.37  Aligned_cols=179  Identities=21%  Similarity=0.231  Sum_probs=127.2

Q ss_pred             eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEc
Q 044155           16 ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLF   95 (239)
Q Consensus        16 ~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~   95 (239)
                      ......++++|..+++|...++...     .....-.+..+..+.+++.+||   ...++|+|++|.|.+...++..+++
T Consensus       875 ~rsP~~L~~~~~~~~~~~Skl~~~~-----~~saepaRs~i~~~vqs~e~L~---s~~r~h~~~~p~~~l~~~~gh~~l~  946 (1205)
T KOG0606|consen  875 CRSPLPLVGHYLNGGDLPSKLHNSG-----CLSAEPARSPILERVQSLESLH---SSLRKHRDLKPDSLLIAYDGHRPLT  946 (1205)
T ss_pred             CCCCcchhhHHhccCCchhhhhcCC-----CcccccccchhHHHHhhhhccc---cchhhcccccccchhhcccCCcccC
Confidence            4556789999999999999988753     2333344455677888999999   7779999999999999999999999


Q ss_pred             cccccccc---------------------CCCC---------cceeecccccccccCccccccCCcccccchhhhhhHHH
Q 044155           96 DFSLSISI---------------------PEGE---------THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLF  145 (239)
Q Consensus        96 dfg~~~~~---------------------~~~~---------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  145 (239)
                      ||+.....                     ..+.         ........+++.|.+||...+......+|.|+.|+.++
T Consensus       947 ~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~ 1026 (1205)
T KOG0606|consen  947 DFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLF 1026 (1205)
T ss_pred             ccccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhh
Confidence            98732110                     0000         01123456889999999999999999999999999999


Q ss_pred             HHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCC-cHHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          146 ELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS-SIEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       146 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      +.++|..||..-.                     ..+.++.+...... +.-+...+...++++...+..+|.+|..+.
T Consensus      1027 e~l~g~pp~na~t---------------------pq~~f~ni~~~~~~~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1027 EVLTGIPPFNAET---------------------PQQIFENILNRDIPWPEGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             hhhcCCCCCCCcc---------------------hhhhhhccccCCCCCCCCccccChhhhhhhhhhhccCchhccCcc
Confidence            9999998875322                     11122222222111 111234556677888889999999988765

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.93  E-value=4.9e-09  Score=76.12  Aligned_cols=74  Identities=22%  Similarity=0.263  Sum_probs=60.5

Q ss_pred             EEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCce
Q 044155           13 CCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVA   92 (239)
Q Consensus        13 ~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~   92 (239)
                      +..+.+...|+|||++|..|.+.+...            ...++..+-.-+.-||   ..+|+|+||+++||+++..+ +
T Consensus        67 ~dvD~~~~~I~me~I~G~~lkd~l~~~------------~~~~~r~vG~~vg~lH---~~givHGDLTtsNiIl~~~~-i  130 (204)
T COG3642          67 YDVDPDNGLIVMEYIEGELLKDALEEA------------RPDLLREVGRLVGKLH---KAGIVHGDLTTSNIILSGGR-I  130 (204)
T ss_pred             EEEcCCCCEEEEEEeCChhHHHHHHhc------------chHHHHHHHHHHHHHH---hcCeecCCCccceEEEeCCc-E
Confidence            344677778999999998998888653            1245666777788899   99999999999999998776 9


Q ss_pred             eEcccccccc
Q 044155           93 KLFDFSLSIS  102 (239)
Q Consensus        93 ~l~dfg~~~~  102 (239)
                      .++|||++..
T Consensus       131 ~~IDfGLg~~  140 (204)
T COG3642         131 YFIDFGLGEF  140 (204)
T ss_pred             EEEECCcccc
Confidence            9999999854

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.92  E-value=5.8e-09  Score=77.79  Aligned_cols=76  Identities=12%  Similarity=0.132  Sum_probs=57.0

Q ss_pred             CCceEEEEEccCCChh-hhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHH-hhCCCCCeeeccccCcceeecCCCceeEc
Q 044155           18 PIPILVFESVQYGTLW-DRILGAPQPHFEPLLLKHRLKIAMDIVHALAYL-HFGFPRPIVFRNFKTSCILFNEENVAKLF   95 (239)
Q Consensus        18 ~~~~iv~e~~~~~sL~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~L-H~~~~~~i~H~dlk~~nil~~~~~~~~l~   95 (239)
                      ...++||||+.+..+. ..++.      ..++......+..+++.++..+ |   ..+++|+||++.||++.. +.+.++
T Consensus        97 ~~~~lvME~Ig~~~~~~~~Lkd------~~~~~~~~~~i~~~i~~~l~~l~H---~~glVHGDLs~~NIL~~~-~~v~iI  166 (197)
T cd05146          97 KKHVLVMSFIGDDQVPAPKLKD------AKLNDEEMKNAYYQVLSMMKQLYK---ECNLVHADLSEYNMLWHD-GKVWFI  166 (197)
T ss_pred             cCCEEEEEEcCCCCccchhhhc------cccCHHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEC-CcEEEE
Confidence            4568999999754332 12221      2344455667789999999988 8   889999999999999974 679999


Q ss_pred             cccccccc
Q 044155           96 DFSLSISI  103 (239)
Q Consensus        96 dfg~~~~~  103 (239)
                      |||.+...
T Consensus       167 DF~qav~~  174 (197)
T cd05146         167 DVSQSVEP  174 (197)
T ss_pred             ECCCceeC
Confidence            99977544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.90  E-value=7.7e-09  Score=75.00  Aligned_cols=84  Identities=24%  Similarity=0.230  Sum_probs=65.7

Q ss_pred             EEEeCCCceEEEEEccC-CChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCc
Q 044155           13 CCLETPIPILVFESVQY-GTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENV   91 (239)
Q Consensus        13 ~~~~~~~~~iv~e~~~~-~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~   91 (239)
                      ++.+.+...++|||++| .++.+++.....   ..........++..+-+.+.-||   ..+++|+||+.+||++..++.
T Consensus        78 ~~~D~~~~~i~ME~~~g~~~vk~~i~~~~~---~~~~d~~~~~~~~~iG~~igklH---~ndiiHGDLTTSNill~~~~~  151 (229)
T KOG3087|consen   78 IFIDTYGGQIYMEFIDGASTVKDFILSTME---DESEDEGLAELARRIGELIGKLH---DNDIIHGDLTTSNILLRSDGN  151 (229)
T ss_pred             EEEecCCCeEEEEeccchhHHHHHHHHHcc---CcccchhHHHHHHHHHHHHHHhh---hCCeecccccccceEEecCCC
Confidence            45677788999999984 388898877543   22233333678888999999999   999999999999999877663


Q ss_pred             ---eeEcccccccc
Q 044155           92 ---AKLFDFSLSIS  102 (239)
Q Consensus        92 ---~~l~dfg~~~~  102 (239)
                         +.++|||++..
T Consensus       152 ~~~~~lIdfgls~~  165 (229)
T KOG3087|consen  152 QITPILIDFGLSSV  165 (229)
T ss_pred             cCceEEEeecchhc
Confidence               47899999754

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.85  E-value=5.7e-09  Score=87.74  Aligned_cols=78  Identities=15%  Similarity=0.113  Sum_probs=59.7

Q ss_pred             CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHH-HHhHHhhCCCCCeeeccccCcceeecCCCceeEc
Q 044155           17 TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH-ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLF   95 (239)
Q Consensus        17 ~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~   95 (239)
                      ....++||||++|++|.+......    ...+   ...++..++. .+..+|   ..|++|+|++|.||+++.++.++++
T Consensus       230 ~~~~vLvmE~i~G~~L~~~~~~~~----~~~~---~~~ia~~~~~~~l~ql~---~~g~~H~D~hPgNilv~~~g~i~li  299 (437)
T TIGR01982       230 TSERVLTMEWIDGIPLSDIAALDE----AGLD---RKALAENLARSFLNQVL---RDGFFHADLHPGNIFVLKDGKIIAL  299 (437)
T ss_pred             cCCceEEEEeECCcccccHHHHHh----cCCC---HHHHHHHHHHHHHHHHH---hCCceeCCCCcccEEECCCCcEEEE
Confidence            345689999999999988765321    1121   2345555555 467889   8999999999999999999999999


Q ss_pred             ccccccccC
Q 044155           96 DFSLSISIP  104 (239)
Q Consensus        96 dfg~~~~~~  104 (239)
                      |||++....
T Consensus       300 DfG~~~~l~  308 (437)
T TIGR01982       300 DFGIVGRLS  308 (437)
T ss_pred             eCCCeeECC
Confidence            999986653

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.83  E-value=2.1e-08  Score=78.71  Aligned_cols=77  Identities=12%  Similarity=0.109  Sum_probs=62.7

Q ss_pred             CceEEEEEccCC-ChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecC-------CC
Q 044155           19 IPILVFESVQYG-TLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNE-------EN   90 (239)
Q Consensus        19 ~~~iv~e~~~~~-sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~-------~~   90 (239)
                      ..++|||++++. +|.+++.....   .......+..++.+++..+.-||   ..|++|+|+++.|||++.       +.
T Consensus       109 ~s~LVte~l~~~~sL~~~~~~~~~---~~~~~~~~~~ll~~la~~i~~LH---~~Gi~HgDL~~~NiLl~~~~~~~~~~~  182 (268)
T PRK15123        109 TSFIITEDLAPTISLEDYCADWAT---NPPDPRLKRMLIKRVATMVRDMH---AAGINHRDCYICHFLLHLPFPGREEDL  182 (268)
T ss_pred             eeEEEEeeCCCCccHHHHHHhhcc---cCCCHHHHHHHHHHHHHHHHHHH---HCcCccCCCChhhEEEeccccCCCCCc
Confidence            467999999865 79888853211   33456677789999999999999   999999999999999975       35


Q ss_pred             ceeEccccccc
Q 044155           91 VAKLFDFSLSI  101 (239)
Q Consensus        91 ~~~l~dfg~~~  101 (239)
                      .+.++||+.+.
T Consensus       183 ~~~LIDl~r~~  193 (268)
T PRK15123        183 KLSVIDLHRAQ  193 (268)
T ss_pred             eEEEEECCccc
Confidence            78999999764

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.73  E-value=7.7e-08  Score=72.95  Aligned_cols=87  Identities=18%  Similarity=0.143  Sum_probs=68.9

Q ss_pred             ceeeEEEEeCC----CceEEEEEccC-CChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            8 LKLIGCCLETP----IPILVFESVQY-GTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         8 v~l~~~~~~~~----~~~iv~e~~~~-~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .+.+++.+...    ..++|+|++++ .+|.+++...     ...+......++.+++..++-||   ..|++|+|+++.
T Consensus        76 P~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~-----~~~~~~~~~~ll~~l~~~i~~lH---~~gi~H~Dl~~~  147 (206)
T PF06293_consen   76 PEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQW-----EQLDPSQRRELLRALARLIAKLH---DAGIYHGDLNPS  147 (206)
T ss_pred             CcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhh-----cccchhhHHHHHHHHHHHHHHHH---HCcCCCCCCCcc
Confidence            34455555422    34799999986 3798888764     22556677889999999999999   999999999999


Q ss_pred             ceeecCCC---ceeEcccccccc
Q 044155           83 CILFNEEN---VAKLFDFSLSIS  102 (239)
Q Consensus        83 nil~~~~~---~~~l~dfg~~~~  102 (239)
                      |||++.++   .+.++||+.++.
T Consensus       148 NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  148 NILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             cEEEeCCCCceeEEEEcchhcee
Confidence            99999987   788999997654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.70  E-value=4.4e-08  Score=71.78  Aligned_cols=68  Identities=16%  Similarity=0.193  Sum_probs=52.4

Q ss_pred             CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC-----eeeccccCcceeecCCCc
Q 044155           17 TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP-----IVFRNFKTSCILFNEENV   91 (239)
Q Consensus        17 ~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~-----i~H~dlk~~nil~~~~~~   91 (239)
                      ....++|||+++|.++.+..          .   .....+.+++.+|+.||   ..+     ++|+|++|.||+++ ++.
T Consensus        63 ~~~~~lv~e~i~G~~l~~~~----------~---~~~~~~~~l~~~l~~LH---~~~~~~~~~~HgD~~~~Nil~~-~~~  125 (170)
T cd05151          63 PETGVLITEFIEGSELLTED----------F---SDPENLEKIAKLLKKLH---SSPLPDLVPCHNDLLPGNFLLD-DGR  125 (170)
T ss_pred             CCCCeEEEEecCCCcccccc----------c---cCHHHHHHHHHHHHHHh---CCCCCCceeecCCCCcCcEEEE-CCe
Confidence            33458999999987775420          0   01234678999999999   666     59999999999998 567


Q ss_pred             eeEccccccc
Q 044155           92 AKLFDFSLSI  101 (239)
Q Consensus        92 ~~l~dfg~~~  101 (239)
                      ++++||+.+.
T Consensus       126 ~~liDf~~a~  135 (170)
T cd05151         126 LWLIDWEYAG  135 (170)
T ss_pred             EEEEeccccc
Confidence            9999999864

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.68  E-value=2.4e-07  Score=77.10  Aligned_cols=130  Identities=15%  Similarity=0.204  Sum_probs=96.1

Q ss_pred             CCCCcccceeeEEEEeC----CCceEEEEEccC-CChhhhhhcCCCC----------CCCcCCHHHHHHHHHHHHHHHhH
Q 044155            1 QMSHNHILKLIGCCLET----PIPILVFESVQY-GTLWDRILGAPQP----------HFEPLLLKHRLKIAMDIVHALAY   65 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~----~~~~iv~e~~~~-~sL~~~l~~~~~~----------~~~~~~~~~~~~~~~~i~~~l~~   65 (239)
                      ++.|+|||++.++|...    ...++|++|.++ ++|.++.......          .....++...+.++.|+..||.+
T Consensus       329 kl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~s  408 (655)
T KOG3741|consen  329 KLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYS  408 (655)
T ss_pred             HhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHH
Confidence            47899999999998732    356899999864 5676654432211          11346788999999999999999


Q ss_pred             HhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHH
Q 044155           66 LHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLF  145 (239)
Q Consensus        66 LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  145 (239)
                      +|   ..|+.-+-|.+.+|++..+.+++|+..|.........             .+|  +   .-..+-|.=.||.+++
T Consensus       409 IH---ssGLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~-------------~~~--l---e~~Qq~D~~~lG~ll~  467 (655)
T KOG3741|consen  409 IH---SSGLACKTLDLKKILVTGKMRIRISGCGIMDVLQEDP-------------TEP--L---ESQQQNDLRDLGLLLL  467 (655)
T ss_pred             HH---hcCceeecccHhHeEeeCcceEEEecccceeeecCCC-------------Ccc--h---hHHhhhhHHHHHHHHH
Confidence            99   8999999999999999999889988777654432221             001  1   1123458889999999


Q ss_pred             HHhcCC
Q 044155          146 ELLTGW  151 (239)
Q Consensus       146 ~~~~g~  151 (239)
                      .+.+|.
T Consensus       468 aLAt~~  473 (655)
T KOG3741|consen  468 ALATGT  473 (655)
T ss_pred             HHhhcc
Confidence            999993

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.58  E-value=1.7e-06  Score=74.27  Aligned_cols=87  Identities=11%  Similarity=0.090  Sum_probs=55.7

Q ss_pred             ccceeeEEEEe-CCCceEEEEEccCCChhhh--hhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            6 HILKLIGCCLE-TPIPILVFESVQYGTLWDR--ILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         6 niv~l~~~~~~-~~~~~iv~e~~~~~sL~~~--l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +.+.+..++.+ ....++||||++|+++.++  +...+. ....+.......++.|       +.   ..|++|+|++|.
T Consensus       221 ~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~-d~~~la~~~v~~~~~Q-------if---~~GffHaDpHPG  289 (537)
T PRK04750        221 DMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGT-DMKLLAERGVEVFFTQ-------VF---RDGFFHADMHPG  289 (537)
T ss_pred             CCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCC-CHHHHHHHHHHHHHHH-------HH---hCCeeeCCCChH
Confidence            33444444432 4556899999999999774  222110 0011222222223333       34   679999999999


Q ss_pred             ceeecCCC----ceeEccccccccc
Q 044155           83 CILFNEEN----VAKLFDFSLSISI  103 (239)
Q Consensus        83 nil~~~~~----~~~l~dfg~~~~~  103 (239)
                      ||+++.++    .++++|||+....
T Consensus       290 NIlv~~~g~~~~~i~llDFGivg~l  314 (537)
T PRK04750        290 NIFVSYDPPENPRYIALDFGIVGSL  314 (537)
T ss_pred             HeEEecCCCCCCeEEEEecceEEEC
Confidence            99999988    8999999987554

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.51  E-value=1.9e-07  Score=69.33  Aligned_cols=73  Identities=18%  Similarity=0.241  Sum_probs=48.2

Q ss_pred             CceEEEEEcc--CCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhH-HhhCCCCCeeeccccCcceeecCCCceeEc
Q 044155           19 IPILVFESVQ--YGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAY-LHFGFPRPIVFRNFKTSCILFNEENVAKLF   95 (239)
Q Consensus        19 ~~~iv~e~~~--~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-LH~~~~~~i~H~dlk~~nil~~~~~~~~l~   95 (239)
                      ..++||||++  |..+.. +...      .+.......++.+++..+.. +|   ..|++|+||.+.||+++.+ .+.++
T Consensus        80 ~~~ivME~I~~~G~~~~~-l~~~------~~~~~~~~~~~~~il~~~~~~~~---~~givHGDLs~~NIlv~~~-~~~iI  148 (188)
T PF01163_consen   80 RNVIVMEYIGEDGVPLPR-LKDV------DLSPEEPKELLEEILEEIIKMLH---KAGIVHGDLSEYNILVDDG-KVYII  148 (188)
T ss_dssp             TTEEEEE--EETTEEGGC-HHHC------GGGGSTHHHHHHHHHHHHHHHHH---CTTEEESS-STTSEEEETT-CEEE-
T ss_pred             CCEEEEEecCCCccchhh-HHhc------cccchhHHHHHHHHHHHHHHHHH---hcCceecCCChhhEEeecc-eEEEE
Confidence            3479999998  655544 3322      12234445667777775444 68   8999999999999999987 79999


Q ss_pred             ccccccc
Q 044155           96 DFSLSIS  102 (239)
Q Consensus        96 dfg~~~~  102 (239)
                      |||.+..
T Consensus       149 Df~qav~  155 (188)
T PF01163_consen  149 DFGQAVD  155 (188)
T ss_dssp             -GTTEEE
T ss_pred             ecCccee
Confidence            9997654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.31  E-value=3.3e-06  Score=64.44  Aligned_cols=91  Identities=25%  Similarity=0.389  Sum_probs=64.6

Q ss_pred             ccceeeEEEEeC---CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhC-------------
Q 044155            6 HILKLIGCCLET---PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFG-------------   69 (239)
Q Consensus         6 niv~l~~~~~~~---~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-------------   69 (239)
                      ++.+++.+....   +..++|||+++|.++.+.+..      ..++......++.+++..|..||+.             
T Consensus        58 ~vp~~~~~~~~~~~~~~~~~v~e~i~G~~l~~~~~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~  131 (223)
T cd05154          58 PVPKVLALCEDPSVLGTPFYVMERVDGRVLRDRLLR------PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRP  131 (223)
T ss_pred             CCCCEEEECCCCCccCCceEEEEEeCCEecCCCCCC------CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCC
Confidence            345666665543   256899999998888765531      1245566666777777777777721             


Q ss_pred             ----------------------------------------CCCCeeeccccCcceeecC--CCceeEcccccccc
Q 044155           70 ----------------------------------------FPRPIVFRNFKTSCILFNE--ENVAKLFDFSLSIS  102 (239)
Q Consensus        70 ----------------------------------------~~~~i~H~dlk~~nil~~~--~~~~~l~dfg~~~~  102 (239)
                                                              ....++|+|+.|.||+++.  ++.+.++||+.+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         132 GGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             CchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                                                    1356899999999999998  56688999998754

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.17  E-value=2.6e-06  Score=64.25  Aligned_cols=66  Identities=18%  Similarity=0.136  Sum_probs=51.9

Q ss_pred             CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccc
Q 044155           19 IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFS   98 (239)
Q Consensus        19 ~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg   98 (239)
                      ..+++|||++|..|.+...         ++.    .++..+.+++.-+|   ..|++|+|..|.|++++.++ ++++|++
T Consensus       117 ~~~ll~EYIeG~~l~d~~~---------i~e----~~~~ki~~~ikqlH---~~G~~HGD~hpgNFlv~~~~-i~iID~~  179 (229)
T PF06176_consen  117 SYVLLMEYIEGVELNDIED---------IDE----DLAEKIVEAIKQLH---KHGFYHGDPHPGNFLVSNNG-IRIIDTQ  179 (229)
T ss_pred             EEEEEEEEecCeecccchh---------cCH----HHHHHHHHHHHHHH---HcCCccCCCCcCcEEEECCc-EEEEECc
Confidence            3468999999988866542         222    24466778899999   99999999999999998665 9999998


Q ss_pred             ccc
Q 044155           99 LSI  101 (239)
Q Consensus        99 ~~~  101 (239)
                      ..+
T Consensus       180 ~k~  182 (229)
T PF06176_consen  180 GKR  182 (229)
T ss_pred             ccc
Confidence            653

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PRK09902 hypothetical protein; Provisional

Probab=98.15  E-value=1e-05  Score=60.86  Aligned_cols=77  Identities=17%  Similarity=0.090  Sum_probs=62.6

Q ss_pred             CceEEEEEccC-CChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCc--eeEc
Q 044155           19 IPILVFESVQY-GTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENV--AKLF   95 (239)
Q Consensus        19 ~~~iv~e~~~~-~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~--~~l~   95 (239)
                      ...+|+|-+.+ .||.+.+.....   .+.+...+..++.+++..++-||   ..|+.|+|+-+.||+++.++.  +.++
T Consensus        99 rA~LVTe~L~g~~~L~~~l~~~~~---~~~~~~~k~~il~~va~~ia~LH---~~Gv~Hgdly~khIll~~~g~~~v~lI  172 (216)
T PRK09902         99 RALLVTEDMAGFISIADWYAQHAV---SPYSDEVRQAMLKAVALAFKKMH---SVNRQHGCCYVRHIYVKTEGKAEAGFL  172 (216)
T ss_pred             EEEEEEEeCCCCccHHHHHhcCCc---CCcchHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHhheeecCCCCeeEEEE
Confidence            35789997743 578777755422   45677888899999999999999   999999999999999987776  8999


Q ss_pred             cccccc
Q 044155           96 DFSLSI  101 (239)
Q Consensus        96 dfg~~~  101 (239)
                      ||.-++
T Consensus       173 DlEk~r  178 (216)
T PRK09902        173 DLEKSR  178 (216)
T ss_pred             Ehhccc
Confidence            998654

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.08  E-value=3e-05  Score=57.82  Aligned_cols=92  Identities=23%  Similarity=0.273  Sum_probs=70.7

Q ss_pred             cccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcce
Q 044155            5 NHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCI   84 (239)
Q Consensus         5 ~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~ni   84 (239)
                      +++.+++|+|-    ..+++|+...+++......  .......+|..+.+++.++++.+.+++.+....+.-.|++++|+
T Consensus        20 ~~~pk~lG~CG----~~~v~E~~~~~~~~~~~~~--l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nf   93 (188)
T PF12260_consen   20 EPFPKLLGSCG----RFYVVEYVGAGSLYGIYRP--LSQFLQSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNF   93 (188)
T ss_pred             CCCCCeeeECC----CEEEEEeecCccccccccc--cccccccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHe
Confidence            48899999982    2669999986666432100  00013457999999999999999999965556788899999999


Q ss_pred             eecCCCceeEcccccccc
Q 044155           85 LFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        85 l~~~~~~~~l~dfg~~~~  102 (239)
                      .+++++.+|++|......
T Consensus        94 gv~~~~~lk~iDld~v~~  111 (188)
T PF12260_consen   94 GVNDDGRLKLIDLDDVFV  111 (188)
T ss_pred             EEeCCCcEEEEechhcch
Confidence            999999999999986543

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.97  E-value=2.6e-06  Score=72.86  Aligned_cols=140  Identities=17%  Similarity=0.134  Sum_probs=99.9

Q ss_pred             CCCCcc-cceeeEEEEeCCCceEEEEEccCC-ChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNH-ILKLIGCCLETPIPILVFESVQYG-TLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~n-iv~l~~~~~~~~~~~iv~e~~~~~-sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      |.+||| .+..++-+..+...+++++++.++ +..+......    ..+..-+...+...-..+++++|   +..-+|+|
T Consensus       289 K~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~~~~~~~se----~~~~~~~~~~~~r~et~~l~~l~---~~~~~~~d  361 (829)
T KOG0576|consen  289 KVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRSSALEMTVSE----IALEQYQFAYPLRKETRPLAELH---SSYKVHRD  361 (829)
T ss_pred             HccCCCCcccccccCCcccccchhhhhhcCCccccccCChhh----Hhhhhhhhhhhhhhhcccccccc---cccccCcc
Confidence            468999 666666666667789999999766 2322222111    22334444556666778999999   55557888


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                          ||+.++ +..+..||+....+....  ......+++.|+|||+.....+....|.|++|.-..++--|-.|.
T Consensus       362 ----~~l~s~-~~~~~~~~~v~~~L~~~~--~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr  430 (829)
T KOG0576|consen  362 ----NILGSE-EEVKLLDFAVPPQLTRTM--KPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPR  430 (829)
T ss_pred             ----cccccc-cccccccccCCcccCccc--ccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCC
Confidence                777655 568999999876654432  345677899999999999999999999999998777777776654

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=2.5e-05  Score=71.20  Aligned_cols=186  Identities=16%  Similarity=0.204  Sum_probs=119.2

Q ss_pred             CCCCcccceeeEEEEeCCCc----eEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            1 QMSHNHILKLIGCCLETPIP----ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~----~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      ++.|+|++.+++|-......    .+..+++.+-++.+.+..-     ..++..+.+.+..++.+|++++|   +....|
T Consensus       238 k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v-----~~i~~~~~r~~~~~~~~GL~~~h---~~~l~~  309 (1351)
T KOG1035|consen  238 KIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSV-----GSIPLETLRILHQKLLEGLAYLH---SLSLEH  309 (1351)
T ss_pred             hhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhc-----cccCHHHHHHHHHHHhhhHHHHH---Hhccce
Confidence            36899999999887644321    2446778878887777654     56888999999999999999999   555555


Q ss_pred             ccccCc---ceeecCCCceeEc--ccccccccCCCCcceeecccccccccCccccccCC--cccccchhhhhhHHHHHhc
Q 044155           77 RNFKTS---CILFNEENVAKLF--DFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV--FNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        77 ~dlk~~---nil~~~~~~~~l~--dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~--~~~~~Di~slG~~l~~~~~  149 (239)
                      .-+...   +--.+.++...++  ||+.++.......  ......+..+-++|......  .+..+|+|.+|.....+..
T Consensus       310 v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~--~~~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~~  387 (1351)
T KOG1035|consen  310 VVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEK--SFSDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLLLQLSQ  387 (1351)
T ss_pred             eEEecccccccccCccceeecchhhhcccccCCCccc--chhhcCccccccccccccccchhhhhhHHHHHHHHHhhhhh
Confidence            544444   3333444455555  7877655433221  11222345577777766544  4445899999999999888


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      |..+-...                        ......+..        .......+....|+..++++|+++.+++..
T Consensus       388 ~~~i~~~~------------------------~~~~~~l~~--------~~~~~~~d~~~~~~~~~~~~Rl~~~~ll~~  434 (1351)
T KOG1035|consen  388 GEDISEKS------------------------AVPVSLLDV--------LSTSELLDALPKCLDEDSEERLSALELLTH  434 (1351)
T ss_pred             cCcccccc------------------------cchhhhhcc--------ccchhhhhhhhhhcchhhhhccchhhhhhc
Confidence            85432110                        000000000        000145667789999999999999998863

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.91  E-value=1.8e-05  Score=61.36  Aligned_cols=70  Identities=19%  Similarity=0.171  Sum_probs=51.1

Q ss_pred             CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEccc
Q 044155           18 PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDF   97 (239)
Q Consensus        18 ~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~df   97 (239)
                      +...+|||+++|-.|...-          +.......++..|+.-+...-   ..|++|+|+.+-||+++.+|.+.++||
T Consensus       180 nRHaVvMe~ieG~eL~~~r----------~~~en~~~il~~il~~~~~~~---~~GiVHGDlSefNIlV~~dg~~~vIDw  246 (304)
T COG0478         180 NRHAVVMEYIEGVELYRLR----------LDVENPDEILDKILEEVRKAY---RRGIVHGDLSEFNILVTEDGDIVVIDW  246 (304)
T ss_pred             ccceeeeehcccceeeccc----------CcccCHHHHHHHHHHHHHHHH---HcCccccCCchheEEEecCCCEEEEeC
Confidence            4568999999975553221          123334445666666666666   689999999999999999999999999


Q ss_pred             ccc
Q 044155           98 SLS  100 (239)
Q Consensus        98 g~~  100 (239)
                      =-+
T Consensus       247 PQ~  249 (304)
T COG0478         247 PQA  249 (304)
T ss_pred             ccc
Confidence            644

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.33  E-value=0.002  Score=48.35  Aligned_cols=85  Identities=21%  Similarity=0.189  Sum_probs=60.5

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccC------CChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQY------GTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~------~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      .+.+|.+++|+.+++.-.-+|+|.+..      .+|.+++...      .++. ...+.+.++   ..+|-   +.+|+.
T Consensus        75 ~~~~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~------~~~~-~~~~~L~~f---~~~l~---~~~Iv~  141 (199)
T PF10707_consen   75 DWSHIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKEG------GLTE-ELRQALDEF---KRYLL---DHHIVI  141 (199)
T ss_pred             cccccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHcC------CccH-HHHHHHHHH---HHHHH---HcCCee
Confidence            477899999999998888889987532      5688888543      3444 333444444   44555   788999


Q ss_pred             ccccCcceeecCCC----ceeEcc-cccc
Q 044155           77 RNFKTSCILFNEEN----VAKLFD-FSLS  100 (239)
Q Consensus        77 ~dlk~~nil~~~~~----~~~l~d-fg~~  100 (239)
                      +|++|.||++..+.    .+.|+| ||..
T Consensus       142 ~dl~~~NIv~~~~~~~~~~lvlIDG~G~~  170 (199)
T PF10707_consen  142 RDLNPHNIVVQRRDSGEFRLVLIDGLGEK  170 (199)
T ss_pred             cCCCcccEEEEecCCCceEEEEEeCCCCc
Confidence            99999999997643    467777 5643

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=97.26  E-value=0.0028  Score=48.73  Aligned_cols=30  Identities=7%  Similarity=0.091  Sum_probs=26.1

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      ...++|+|+.|.||+++.++ +.++||+.+.
T Consensus       152 ~~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       152 TSTCLHGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             CCceEecCCCCCcEEEcCCC-cEEEechhcC
Confidence            44678999999999999888 9999999764

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.14  E-value=0.0012  Score=50.77  Aligned_cols=76  Identities=21%  Similarity=0.228  Sum_probs=54.4

Q ss_pred             CceEEEEEccCC-ChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEccc
Q 044155           19 IPILVFESVQYG-TLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDF   97 (239)
Q Consensus        19 ~~~iv~e~~~~~-sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~df   97 (239)
                      ...+||||+... .-.-.|+.      ..+...+...+..++++++.-|-.  ..++||+||..-|||+. ++.+.|+|+
T Consensus       140 ~nVLvMEfIg~~g~pAP~LkD------v~~e~~e~~~~~~~~v~~~~~l~~--~a~LVHgDLSEyNiL~~-~~~p~iID~  210 (268)
T COG1718         140 NNVLVMEFIGDDGLPAPRLKD------VPLELEEAEGLYEDVVEYMRRLYK--EAGLVHGDLSEYNILVH-DGEPYIIDV  210 (268)
T ss_pred             CCeEEEEeccCCCCCCCCccc------CCcCchhHHHHHHHHHHHHHHHHH--hcCcccccchhhheEEE-CCeEEEEEC
Confidence            457899999532 11112211      223333677778889999888873  48999999999999999 778999999


Q ss_pred             cccccc
Q 044155           98 SLSISI  103 (239)
Q Consensus        98 g~~~~~  103 (239)
                      +-+...
T Consensus       211 ~QaV~~  216 (268)
T COG1718         211 SQAVTI  216 (268)
T ss_pred             cccccc
Confidence            976543

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.12  E-value=0.0028  Score=49.28  Aligned_cols=31  Identities=6%  Similarity=0.021  Sum_probs=26.8

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      ...++|+|+.|.||+++.++...|+||+.+.
T Consensus       162 ~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         162 DLVVTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             ceEEECCCCCCccEEEeCCcEEEEEEccccc
Confidence            4569999999999999998777899998763

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.01  E-value=0.002  Score=55.41  Aligned_cols=79  Identities=15%  Similarity=0.093  Sum_probs=53.8

Q ss_pred             CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcc
Q 044155           17 TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFD   96 (239)
Q Consensus        17 ~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~d   96 (239)
                      .+.-.++|||++|-.+.+...-..    ...+.+.....+.++.  +..+-   ..|+.|.|..|.||++..++.+.+.|
T Consensus       238 t~~~VLtmE~i~Gi~i~d~~~l~~----~g~d~k~ia~~~~~~f--~~q~~---~dgffHaDpHpGNi~v~~~g~i~~lD  308 (517)
T COG0661         238 TTRRVLTMEWIDGIKISDIAALKS----AGIDRKELAELLVRAF--LRQLL---RDGFFHADPHPGNILVRSDGRIVLLD  308 (517)
T ss_pred             cCCcEEEEEeeCCEecccHHHHHh----cCCCHHHHHHHHHHHH--HHHHH---hcCccccCCCccceEEecCCcEEEEc
Confidence            456689999999988888742211    2233333322222221  23333   57999999999999999999999999


Q ss_pred             cccccccC
Q 044155           97 FSLSISIP  104 (239)
Q Consensus        97 fg~~~~~~  104 (239)
                      ||+.....
T Consensus       309 fGi~g~l~  316 (517)
T COG0661         309 FGIVGRLD  316 (517)
T ss_pred             CcceecCC
Confidence            99876543

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=97.00  E-value=0.0015  Score=55.44  Aligned_cols=37  Identities=16%  Similarity=0.209  Sum_probs=28.7

Q ss_pred             CCCcccceeeEEEEeC-CCceEEEEEccCCChhhhhhcC
Q 044155            2 MSHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGA   39 (239)
Q Consensus         2 l~H~niv~l~~~~~~~-~~~~iv~e~~~~~sL~~~l~~~   39 (239)
                      +.|+|+..++++.... ...++|+|++. -||+|.+..+
T Consensus        39 l~~~~l~~yl~~~r~~~~r~IVV~e~~~-~Sled~~~~~   76 (725)
T KOG1093|consen   39 LQHDNLCQYLDFSRGKHERVIVVMEHYT-MSLEDILKTG   76 (725)
T ss_pred             hcCccceeeEeeecCccceEEEEehhhc-cchHHHHHhc
Confidence            5789988888776533 34778999995 8999998765

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=96.80  E-value=0.00012  Score=69.04  Aligned_cols=150  Identities=13%  Similarity=-0.042  Sum_probs=101.5

Q ss_pred             CCcccceeeEEEE--eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHh--hCCCCCeeecc
Q 044155            3 SHNHILKLIGCCL--ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLH--FGFPRPIVFRN   78 (239)
Q Consensus         3 ~H~niv~l~~~~~--~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH--~~~~~~i~H~d   78 (239)
                      .|+++...+.=..  +....+..++++.+|.+.+.+.++.... ..+...-....-.+...+..-.|  .....--+|++
T Consensus      1287 ~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~-~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~ 1365 (2724)
T KOG1826|consen 1287 KHYLTEVDPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEES-PDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKS 1365 (2724)
T ss_pred             hceeeecccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccC-CcchhchHHHHHHHHHhccchhhhcccCCccchhhh
Confidence            4555554433322  2335578899999999999887764321 22222222222223245555544  22234478999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      +|+.|.+|..+-.++++++|+.+.. .......+...+|+.|++|+..+.-.++.++|+|..|+.+|..-.|..+|
T Consensus      1366 Lkf~lpmIVtny~v~~gk~gLdKIk-np~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~f 1440 (2724)
T KOG1826|consen 1366 LKFTLPMIVTNYNVKLGKGGLDKIK-NPVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYF 1440 (2724)
T ss_pred             hhhhccceecCCccccccccccccc-CchHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHH
Confidence            9999999999999999999998732 22233345666788899999998888888899999999999887776554

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=96.69  E-value=0.007  Score=46.79  Aligned_cols=32  Identities=13%  Similarity=0.238  Sum_probs=26.5

Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~  102 (239)
                      ...++|+|+.+.|++++.++..-|+||+.+..
T Consensus       163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~  194 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCLGV  194 (235)
T ss_pred             CceEEeCCCCCCcEEEECCCEEEEEeCcccCc
Confidence            45699999999999998776567999997643

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PLN02876 acyl-CoA dehydrogenase

Probab=96.34  E-value=0.024  Score=52.12  Aligned_cols=32  Identities=25%  Similarity=0.446  Sum_probs=25.1

Q ss_pred             CCeeeccccCcceeecCC-C-ceeEccccccccc
Q 044155           72 RPIVFRNFKTSCILFNEE-N-VAKLFDFSLSISI  103 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~-~-~~~l~dfg~~~~~  103 (239)
                      ..++|+|+++.|++++.+ + ..-|.||+++...
T Consensus       225 ~~LvHGD~~~~Nvl~~~~~~~v~aVLDWE~a~~G  258 (822)
T PLN02876        225 TGIVHGDFRIDNLVFHPTEDRVIGILDWELSTLG  258 (822)
T ss_pred             cceEecCcccccEEEcCCCCeEEEEEeeeccccC
Confidence            359999999999999853 3 3578999987654

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=96.20  E-value=0.015  Score=50.22  Aligned_cols=75  Identities=16%  Similarity=0.098  Sum_probs=50.1

Q ss_pred             CCceEEEEEccCCChhhh--hhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecC----CCc
Q 044155           18 PIPILVFESVQYGTLWDR--ILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNE----ENV   91 (239)
Q Consensus        18 ~~~~iv~e~~~~~sL~~~--l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~----~~~   91 (239)
                      ..-.++|||++|..+.|.  +.+.      .+....+..-+.+...-.-+     ..|.+|.|=-|.||++..    +..
T Consensus       275 t~RVLtME~~~G~~i~Dl~~i~~~------gi~~~~i~~~l~~~~~~qIf-----~~GffHaDPHPGNilv~~~~~~~~~  343 (538)
T KOG1235|consen  275 TKRVLTMEYVDGIKINDLDAIDKR------GISPHDILNKLVEAYLEQIF-----KTGFFHADPHPGNILVRPNPEGDEE  343 (538)
T ss_pred             cceEEEEEecCCccCCCHHHHHHc------CCCHHHHHHHHHHHHHHHHH-----hcCCccCCCCCCcEEEecCCCCCcc
Confidence            356899999999877664  4443      24344333333333222222     568999999999999994    567


Q ss_pred             eeEccccccccc
Q 044155           92 AKLFDFSLSISI  103 (239)
Q Consensus        92 ~~l~dfg~~~~~  103 (239)
                      +.+.|||+....
T Consensus       344 ivllDhGl~~~i  355 (538)
T KOG1235|consen  344 IVLLDHGLYAVI  355 (538)
T ss_pred             EEEEcccccccc
Confidence            899999987654

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=95.97  E-value=0.0076  Score=48.53  Aligned_cols=69  Identities=14%  Similarity=0.120  Sum_probs=49.5

Q ss_pred             eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEc
Q 044155           16 ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLF   95 (239)
Q Consensus        16 ~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~   95 (239)
                      +.+..++|||++.+..|...-+-        .+...+..-+..+   +.-|-   .+|++|+|..-=||++.+++.++++
T Consensus       179 D~~RH~Vvmelv~g~Pl~~v~~v--------~d~~~ly~~lm~~---Iv~la---~~GlIHgDFNEFNimv~dd~~i~vI  244 (465)
T KOG2268|consen  179 DHNRHCVVMELVDGYPLRQVRHV--------EDPPTLYDDLMGL---IVRLA---NHGLIHGDFNEFNIMVKDDDKIVVI  244 (465)
T ss_pred             cccceeeHHHhhcccceeeeeec--------CChHHHHHHHHHH---HHHHH---HcCceecccchheeEEecCCCEEEe
Confidence            34567899999998888654422        2233333333333   33344   8899999999999999999999999


Q ss_pred             ccc
Q 044155           96 DFS   98 (239)
Q Consensus        96 dfg   98 (239)
                      ||=
T Consensus       245 DFP  247 (465)
T KOG2268|consen  245 DFP  247 (465)
T ss_pred             ech
Confidence            995

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=95.69  E-value=0.045  Score=44.23  Aligned_cols=34  Identities=12%  Similarity=0.332  Sum_probs=29.5

Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccccC
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP  104 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~  104 (239)
                      ...++|+|+.+.|++++..+-+-+.||+++....
T Consensus       197 ~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGD  230 (321)
T COG3173         197 PPVLVHGDYRPGNLIIDPGRPTGVLDWELATLGD  230 (321)
T ss_pred             CceeeeCCcccCCEEEeCCCeeEEEeccccccCC
Confidence            4569999999999999999888999999986543

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=95.09  E-value=0.035  Score=42.74  Aligned_cols=31  Identities=23%  Similarity=0.463  Sum_probs=26.8

Q ss_pred             CCCeeeccccCcceeecC-CCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNE-ENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~-~~~~~l~dfg~~~  101 (239)
                      ...++|+|+.+.||+++. ++.+.++||..+.
T Consensus       169 ~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         169 PIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             CEEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            457999999999999998 5779999998763

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=95.06  E-value=0.033  Score=45.19  Aligned_cols=55  Identities=16%  Similarity=0.063  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHhHHhhC-CCCCeeeccccCcceeecCCC------------------ceeEccccccccc
Q 044155           49 LKHRLKIAMDIVHALAYLHFG-FPRPIVFRNFKTSCILFNEEN------------------VAKLFDFSLSISI  103 (239)
Q Consensus        49 ~~~~~~~~~~i~~~l~~LH~~-~~~~i~H~dlk~~nil~~~~~------------------~~~l~dfg~~~~~  103 (239)
                      ....+-+..||+.-.--.-+. +-...+|.||||+|||+.+..                  .+++.||.+++..
T Consensus       274 ~~YvkfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~  347 (434)
T PF05445_consen  274 VEYVKFIFLQIALLYIKIYELPCCTNFLHVDLKPDNILIFDSKEPIRIKFGNRNYVFKEPIRCCLNDFDFSQVA  347 (434)
T ss_pred             HHHHHHHHHHHHHHHeeeecCCCcceeeecccCcCcEEEecCCCceEEEECCeEEEecccceeeecccCHHHhc
Confidence            345556677775433223221 245799999999999997654                  2567777776653

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=94.77  E-value=0.072  Score=42.79  Aligned_cols=31  Identities=19%  Similarity=0.313  Sum_probs=27.1

Q ss_pred             CCCeeeccccCcceeecCC----CceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEE----NVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~----~~~~l~dfg~~~  101 (239)
                      ...++|+|+.+.||+++.+    +.+.++||..+.
T Consensus       178 ~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         178 PVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             CceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            5679999999999999885    789999999863

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=94.48  E-value=0.1  Score=42.86  Aligned_cols=52  Identities=27%  Similarity=0.307  Sum_probs=40.5

Q ss_pred             CHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccc
Q 044155           48 LLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        48 ~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~  102 (239)
                      ...+...++-+.+.-+.-+..  .-+.-|||+.-+||+|+ +|++.|+||-+++.
T Consensus       319 ~~~e~lsff~s~~sil~~lek--kf~fehrnlt~~niLId-~GnvtLIDfklsRl  370 (488)
T COG5072         319 RSEEELSFFWSCISILDILEK--KFPFEHRNLTLDNILID-EGNVTLIDFKLSRL  370 (488)
T ss_pred             cHHHHHHHHHHHHHHHhhhhh--cCCcccccccccceeee-cCceEEEEeeeeec
Confidence            456666666666555555553  55788999999999999 89999999999874

>PRK05231 homoserine kinase; Provisional

Probab=94.41  E-value=0.026  Score=45.77  Aligned_cols=31  Identities=19%  Similarity=0.532  Sum_probs=26.5

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      ..+++|+|+.|.||+++.+...-++||+.+.
T Consensus       186 p~~liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        186 PRGVIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             CcccCCCCCCCCcEEEECCceEEEEeccccc
Confidence            5689999999999999876656899999763

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=94.24  E-value=0.048  Score=41.68  Aligned_cols=39  Identities=15%  Similarity=0.153  Sum_probs=33.6

Q ss_pred             HHHHhHHhhCCCCCeeeccccCcceeecCCCceeEccccc
Q 044155           60 VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL   99 (239)
Q Consensus        60 ~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~   99 (239)
                      +.+|.-.|++ ..+.+|+|..|+||+-++.|-+||.|-+.
T Consensus       151 i~~L~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~~  189 (308)
T PF07387_consen  151 IKDLMDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPVC  189 (308)
T ss_pred             HHHHHHhhcc-CCCeecCCCChhheeecCCCCEEecChhh
Confidence            3567778854 67899999999999999999999999774

The function of this family is unknown.

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=94.24  E-value=0.066  Score=43.18  Aligned_cols=31  Identities=23%  Similarity=0.554  Sum_probs=27.4

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      ..+++|+|+.+.|++++.++.+.++||+.+.
T Consensus       186 ~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       186 PRGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             CCccCCCCCCcCcEEEECCceEEEeeccccc
Confidence            5789999999999999988767899999763

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PRK10271 thiK thiamine kinase; Provisional

Probab=93.94  E-value=0.041  Score=40.88  Aligned_cols=30  Identities=7%  Similarity=0.161  Sum_probs=25.7

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      ..-.+|+|+.|.|++++.++ ++++||+.+.
T Consensus        76 ~~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~  105 (188)
T PRK10271         76 RLAPLHMDVHAGNLVHSASG-LRLIDWEYAG  105 (188)
T ss_pred             CeeeecCCCCCccEEEECCC-EEEEeCCccc
Confidence            34569999999999998877 8899999874

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=93.87  E-value=0.04  Score=42.08  Aligned_cols=31  Identities=16%  Similarity=0.337  Sum_probs=21.6

Q ss_pred             CCCeeeccccCcceeec-CCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFN-EENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~-~~~~~~l~dfg~~~  101 (239)
                      ...++|+|+.|.||+++ .++.+.|+||+.+.
T Consensus       165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~  196 (239)
T PF01636_consen  165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDAG  196 (239)
T ss_dssp             CEEEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred             CcEEEEeccccccceeeeccceeEEEecccce
Confidence            56799999999999999 55656799998763

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=93.83  E-value=0.045  Score=41.54  Aligned_cols=31  Identities=26%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             CCCeeeccccCcceee-cCCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILF-NEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~-~~~~~~~l~dfg~~~  101 (239)
                      ..-+.|+|+.+.||++ +.++.++++||..+.
T Consensus       142 ~~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~  173 (211)
T PF01633_consen  142 PLVFCHNDLNPGNILINNKDGEVKLIDFEYAG  173 (211)
T ss_dssp             GEEEE-S--SGGGEEETSSSSCEEE--GTT-E
T ss_pred             CceEeeccCccccEEeccCCCeEEEecHHHHh
Confidence            3468999999999999 788899999998763

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PHA03111 Ser/Thr kinase; Provisional

Probab=93.82  E-value=0.16  Score=41.19  Aligned_cols=42  Identities=12%  Similarity=0.037  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHhHHhh-CCCCCeeeccccCcceeecCCC
Q 044155           49 LKHRLKIAMDIVHALAYLHF-GFPRPIVFRNFKTSCILFNEEN   90 (239)
Q Consensus        49 ~~~~~~~~~~i~~~l~~LH~-~~~~~i~H~dlk~~nil~~~~~   90 (239)
                      ....+-+..||+.-.-.+.+ .+-...+|.||||+|||+.+..
T Consensus       278 ~~YikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~  320 (444)
T PHA03111        278 VEYIKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSD  320 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCC
Confidence            45566777888665434432 2245799999999999997665

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=93.77  E-value=0.13  Score=40.80  Aligned_cols=45  Identities=11%  Similarity=0.098  Sum_probs=34.1

Q ss_pred             HHHHHHHHHhHHhhCCC-CCeeeccccCcceeecCCCceeEccccccc
Q 044155           55 IAMDIVHALAYLHFGFP-RPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        55 ~~~~i~~~l~~LH~~~~-~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      .+..+-.++.-.+.  + .-++|+|+.|.|++.++.+.+.|+||..|.
T Consensus       137 ~~~~l~~~l~~~~~--~~~v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg  182 (269)
T COG0510         137 KLKELRRALEEVPK--DDLVPCHNDLNPGNLLLTDKGGLFLIDWEYAG  182 (269)
T ss_pred             HHHHHHHHhhhcCC--CceeeecCCCCccceEEcCCCcEEEEecccCC
Confidence            44444555555552  2 359999999999999998999999998763

>TIGR02721 ycfN_thiK thiamine kinase

Probab=93.51  E-value=0.05  Score=42.61  Aligned_cols=29  Identities=10%  Similarity=0.196  Sum_probs=25.4

Q ss_pred             CCeeeccccCcceeecCCCceeEccccccc
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      ..++|+|+.|.||+++.++ +.++||+.+.
T Consensus       146 ~~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~  174 (256)
T TIGR02721       146 LAPLHMDVHAYNLVVTPQG-LKLIDWEYAS  174 (256)
T ss_pred             CeeecCCCCcCcEEEeCCC-CEEEeccccC
Confidence            3589999999999999877 7899999764

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=93.43  E-value=0.048  Score=43.63  Aligned_cols=31  Identities=19%  Similarity=0.550  Sum_probs=27.0

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      ..+++|+|+.|.|++++.++.+.|+||+.+.
T Consensus       174 ~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         174 PRGVIHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             CCcCCccCcCcccEEEeCCceEEEeehhhhc
Confidence            3579999999999999988777899998763

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=93.36  E-value=0.18  Score=40.54  Aligned_cols=29  Identities=21%  Similarity=0.397  Sum_probs=25.1

Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLS  100 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~  100 (239)
                      ..+++|+|+.+.|++++. +.+.++||+.+
T Consensus       186 ~~~liHgD~~~~Nil~~~-~~i~lIDfd~~  214 (313)
T TIGR02906       186 IRGFCHQDYAYHNILLKD-NEVYVIDFDYC  214 (313)
T ss_pred             cCceEcCCCCcccEEEeC-CcEEEEECccc
Confidence            368999999999999987 56889999865

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria

Probab=93.03  E-value=0.57  Score=38.56  Aligned_cols=118  Identities=12%  Similarity=0.202  Sum_probs=57.2

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEcc-CCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQ-YGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~-~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .||+.++. .+-.+.+.+.+.++.-+ .-++ ..+        ..++...+++++.+| ..|...    ...-+|--+.|
T Consensus        21 ~~~~f~~~-~i~~~ed~~~~~y~~~~~~~~f-~~i--------~~~~~~eklr~~~ni-~~l~~~----~~~~~~f~l~P   85 (359)
T PF10140_consen   21 HDPYFLPQ-EIEEDEDELTFTYQIPESYQSF-EEI--------KKLDKSEKLRLLINI-AALKEH----LNSRYTFILHP   85 (359)
T ss_dssp             --TTB--E-EEEE-SSEEEEEE---TTSEEG-GGG--------GGS-HHHHHHHHHHG-GGGGGG----GGSSEE---SG
T ss_pred             cCcccCCc-eEEEeCCEEEEEEEcCcccCcH-HHH--------HhcCHHHHHHHHHHH-HHHHHH----hcCceeEEEec
Confidence            57777774 44445555444444332 1222 223        456778898988884 344432    22357889999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchh-hhhhHHHHHhcCCCCcccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVF-SFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~-slG~~l~~~~~g~~p~~~~~~  159 (239)
                      +|++++.++.+++.-.|+-..++                  |.     .. ...|.| ..=+++..+++++..|+..-.
T Consensus        86 ~Nl~fd~~~~p~i~hrGi~~~l~------------------P~-----~~-~ee~fl~qyKali~~ll~~k~~Fe~ly~  140 (359)
T PF10140_consen   86 ENLVFDKNLMPKILHRGIKEILP------------------PY-----EL-DEEDFLKQYKALIIALLDPKYSFEDLYN  140 (359)
T ss_dssp             GGEEE-TTS-EEES--EETTTBS-----------------------------HHHHHHHHHHHHHHHH-TT--HHHHHH
T ss_pred             hheEEcCCCCEEEEEcCCcCCCC------------------CC-----CC-CHHHHHHHHHHHHHHHHcCCCCHHHHHh
Confidence            99999999999999888743321                  11     00 122322 466677788888888876433

This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.

>PLN02236 choline kinase

Probab=92.54  E-value=0.21  Score=41.12  Aligned_cols=31  Identities=10%  Similarity=0.275  Sum_probs=26.4

Q ss_pred             CCCeeeccccCcceeecC-CCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNE-ENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~-~~~~~l~dfg~~~  101 (239)
                      ...++|+|+++.||++++ ++.+.++||..+.
T Consensus       199 ~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~  230 (344)
T PLN02236        199 EIGFCHNDLQYGNIMIDEETRAITIIDYEYAS  230 (344)
T ss_pred             CceEEeCCCCcCcEEEeCCCCcEEEEeehhcc
Confidence            457899999999999986 4679999998864

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=92.21  E-value=0.35  Score=39.49  Aligned_cols=28  Identities=18%  Similarity=0.438  Sum_probs=25.0

Q ss_pred             eeeccccCcceeecCCCc-eeEccccccc
Q 044155           74 IVFRNFKTSCILFNEENV-AKLFDFSLSI  101 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~-~~l~dfg~~~  101 (239)
                      ++|+|+-|+||+++.+.. ..++||+.+.
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEccccc
Confidence            999999999999999874 8899999753

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=92.08  E-value=0.12  Score=41.05  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=25.8

Q ss_pred             CCCeeeccccCcceeecCCCc-eeEcccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENV-AKLFDFSLSIS  102 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~-~~l~dfg~~~~  102 (239)
                      ...++|+|+.|.||+++.++. .-|+||+.+..
T Consensus       184 ~~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~i  216 (276)
T cd05152         184 HTVLVHGDLHPGHILIDEDARVTGLIDWTEAKV  216 (276)
T ss_pred             CCeeEeCCCCCCcEEEeCCCCEEEEECcHhccc
Confidence            345899999999999997554 46999998754

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=91.60  E-value=0.16  Score=38.13  Aligned_cols=31  Identities=23%  Similarity=0.314  Sum_probs=25.6

Q ss_pred             CCCeeeccccCcceeecCCC-----ceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEEN-----VAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~-----~~~l~dfg~~~  101 (239)
                      ...++|+|+.+.|+++..++     .+.++||..+.
T Consensus       119 ~~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~  154 (196)
T smart00587      119 FNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSH  154 (196)
T ss_pred             ceEEeeCCCCccceeeccCCCCCccceEEEecccCC
Confidence            45799999999999998654     57899998764

subfamily of choline kinases

>PRK06148 hypothetical protein; Provisional

Probab=90.56  E-value=0.58  Score=44.29  Aligned_cols=31  Identities=19%  Similarity=0.418  Sum_probs=25.9

Q ss_pred             CCCeeeccccCcceeecCCC--ce-eEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEEN--VA-KLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~--~~-~l~dfg~~~  101 (239)
                      ..+++|+|+.+.||+++.++  .+ -|+|||.+.
T Consensus       202 p~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~  235 (1013)
T PRK06148        202 PAQVIHNDANDYNILVDADDGERISGLIDFGDAV  235 (1013)
T ss_pred             CcceECCCCCcccEEEcCCCCcceEEEEECcccc
Confidence            56899999999999999875  44 599999764

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=89.50  E-value=0.2  Score=40.46  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=28.0

Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~  102 (239)
                      ..+++|+|+.+.|++++.++.+-++||..+..
T Consensus       195 ~~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       195 RTVLVHGKLSLSHFLYDETRGGYFINFEKASF  226 (309)
T ss_pred             ceeeeCCCCcHHhEEEcCCCCEEEEEhhhccc
Confidence            45799999999999999988899999987643

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=89.41  E-value=0.29  Score=39.99  Aligned_cols=29  Identities=17%  Similarity=0.337  Sum_probs=24.9

Q ss_pred             CeeeccccCcceeecC-CCceeEccccccc
Q 044155           73 PIVFRNFKTSCILFNE-ENVAKLFDFSLSI  101 (239)
Q Consensus        73 ~i~H~dlk~~nil~~~-~~~~~l~dfg~~~  101 (239)
                      -..|+|+.+.||+++. ++.++++||..+-
T Consensus       183 v~CHnDl~~~NiL~~~~~~~l~lID~EYag  212 (330)
T PLN02421        183 VFAHNDLLSGNLMLNEDEGKLYFIDFEYGS  212 (330)
T ss_pred             EEEECCCCcccEEEeCCCCcEEEEcccccC
Confidence            3799999999999975 4679999999873

>PRK06149 hypothetical protein; Provisional

Probab=88.00  E-value=0.83  Score=43.09  Aligned_cols=31  Identities=13%  Similarity=0.210  Sum_probs=25.4

Q ss_pred             CCCeeeccccCcceeecCCC--c---eeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEEN--V---AKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~--~---~~l~dfg~~~  101 (239)
                      ..+++|+|+.+.||+++.+.  .   ..|+|||.+.
T Consensus       207 ~~g~IH~Dl~~~Nilv~~~~~~~~~v~giIDFgD~~  242 (972)
T PRK06149        207 PLQAVHLDITDDNVVGSRDADGRWQPDGVIDFGDLV  242 (972)
T ss_pred             cccccCCCCCcccEEEcCCCCCCcceeEEEEcccch
Confidence            67899999999999998653  2   3789999753

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=87.80  E-value=0.89  Score=38.19  Aligned_cols=32  Identities=19%  Similarity=0.310  Sum_probs=27.1

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSISI  103 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~  103 (239)
                      ...++|+|+.+.||++..+ .++++||.++...
T Consensus       222 ~~~l~HgDl~~gni~~~~~-~~~viD~E~a~~G  253 (401)
T PRK09550        222 AEALLHGDLHTGSIFVTEE-ETKVIDPEFAFYG  253 (401)
T ss_pred             CCceeeccCCcccEEeeCC-CcEEEeccccccC
Confidence            5679999999999999776 5899999877543

>COG4499 Predicted membrane protein [Function unknown]

Probab=87.50  E-value=4.4  Score=33.45  Aligned_cols=87  Identities=14%  Similarity=0.106  Sum_probs=60.3

Q ss_pred             cCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccc
Q 044155           46 PLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEY  125 (239)
Q Consensus        46 ~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  125 (239)
                      .+....+++++.+.+..|.-+-    +.-.|-=+.|+||+++.+..+.+..+|+-...+             |.=+.|| 
T Consensus        81 ~~~k~~Klr~a~~~I~~l~e~~----~tr~~~~laPeNilf~~~l~p~~vH~Glk~~lp-------------Pye~tee-  142 (434)
T COG4499          81 RKEKTRKLRLALQNIATLSELN----NTRYTFFLAPENILFDGGLTPFFVHRGLKNSLP-------------PYEMTEE-  142 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh----ccceeEEecchheEEcCCCceEEEecchhccCC-------------CCCCCHH-
Confidence            4556667777888887777644    345667788999999999999999999753332             2123444 


Q ss_pred             cccCCcccccchh-hhhhHHHHHhcCCCCccccccc
Q 044155          126 MRTGVFNEKSNVF-SFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus       126 ~~~~~~~~~~Di~-slG~~l~~~~~g~~p~~~~~~~  160 (239)
                                +.| ++-+++..++.|+.+|+.....
T Consensus       143 ----------~f~~~ykA~~~~~fn~k~~Fe~l~~g  168 (434)
T COG4499         143 ----------RFLKEYKALAIYAFNGKFSFESLVNG  168 (434)
T ss_pred             ----------HHHHHHHHHHHHHHcCCccHHHHhcc
Confidence                      333 4667778889999998765443

>PRK11768 serine/threonine protein kinase; Provisional

Probab=87.02  E-value=1.3  Score=36.15  Aligned_cols=29  Identities=10%  Similarity=0.115  Sum_probs=24.4

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      ..+++|+|+-+.||+++ + .+.++||+.+.
T Consensus       195 ~~~liHgD~h~~NvL~~-d-~~~iIDFDd~~  223 (325)
T PRK11768        195 RLLRLHGDCHPGNILWR-D-GPHFVDLDDAR  223 (325)
T ss_pred             CccceecCCCchhcccc-C-CcEEEeCCCCC
Confidence            55789999999999995 4 57899999764

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=85.77  E-value=2.6  Score=35.67  Aligned_cols=63  Identities=14%  Similarity=-0.022  Sum_probs=45.1

Q ss_pred             ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCC
Q 044155           20 PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEEN   90 (239)
Q Consensus        20 ~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~   90 (239)
                      ..++=+|..|.++..+++..      ..++....+++.-...|+--+-.  ..+.+|.|+.|.||++..+.
T Consensus       320 ~vl~E~~~~Gl~v~~~v~~~------~~pe~l~kkva~lg~~AllkMl~--vDNFvHaDlHPGNVlirf~~  382 (565)
T KOG1236|consen  320 LVLVETYERGLSVLRFVKWK------SQPEALVKKVAKLGVNALLKMLI--VDNFVHADLHPGNVLIRFNK  382 (565)
T ss_pred             ceeeeeccccccHHhhhhcc------cChHHHHHHHHHHHHHHHHHHHH--hhcceecccCCCcEEEEecC
Confidence            35666688888998888753      34455666666666666554443  67899999999999986654

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=85.76  E-value=0.49  Score=37.83  Aligned_cols=30  Identities=30%  Similarity=0.452  Sum_probs=24.7

Q ss_pred             CCeeeccccCcceeecCCC-----ceeEccccccc
Q 044155           72 RPIVFRNFKTSCILFNEEN-----VAKLFDFSLSI  101 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~-----~~~l~dfg~~~  101 (239)
                      .-++|+|+.+.||++..++     .+.+.||..+.
T Consensus       215 ~vl~HGD~w~nNilf~~~~~g~~~~~~liDfQ~~~  249 (294)
T PF02958_consen  215 NVLCHGDFWTNNILFKYDDDGKPIDVVLIDFQLAR  249 (294)
T ss_pred             eEEEcCccCHHhEeEccccccccccceeecccccc
Confidence            4599999999999997653     57899998764

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=83.24  E-value=0.95  Score=37.43  Aligned_cols=32  Identities=13%  Similarity=0.297  Sum_probs=26.8

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSISI  103 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~  103 (239)
                      ...++|+|+-+.||+++.++ ++++|+.++...
T Consensus       191 ~~~llHGDl~~gNi~~~~~~-~~~iD~e~~~~G  222 (370)
T TIGR01767       191 AETLLHGDLHSGSIFVSEHE-TKVIDPEFAFYG  222 (370)
T ss_pred             cceeeeccCCcccEEEcCCC-CEEEcCcccccC
Confidence            66899999999999997765 789999876544

This enzyme is involved in the methionine salvage pathway in certain bacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		9e-21
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		4e-20
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		5e-19
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		4e-18
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		7e-09
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		3e-08
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		5e-07
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		5e-07
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		5e-07
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		6e-07
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		6e-07
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		7e-07
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		7e-07
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		7e-07
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		8e-07
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		8e-07
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		8e-07
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		8e-07
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		8e-07
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		9e-07
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		9e-07
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		9e-07
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		9e-07
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-06
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-06
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		2e-06
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		2e-06
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		2e-06
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		5e-06
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		5e-06
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		5e-06
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		6e-06
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		6e-06
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		6e-06
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		6e-06
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		8e-06
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		8e-06
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		8e-06
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		8e-06
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		8e-06
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		8e-06
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		9e-06
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		9e-06
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		9e-06
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		9e-06
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		9e-06
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		1e-05
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		1e-05
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		1e-05
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		1e-05
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		1e-05
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		1e-05
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		1e-05
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		1e-05
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		1e-05
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		1e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		1e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		1e-05
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		1e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		2e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		4e-05
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		7e-05
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		7e-05
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		7e-05
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		7e-05
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		7e-05
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		7e-05
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		8e-05
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		9e-05
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		9e-05
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		1e-04
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		1e-04
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		1e-04
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		1e-04
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		1e-04
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		1e-04
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		1e-04
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		1e-04
2pl0_A	289	Lck Bound To Imatinib Length = 289		1e-04
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		2e-04
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		2e-04
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		2e-04
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		2e-04
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		2e-04
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		2e-04
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		2e-04
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		2e-04
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		2e-04
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		3e-04
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		3e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		3e-04
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		3e-04
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-04
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		4e-04
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		4e-04
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		4e-04
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		4e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		4e-04
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		4e-04
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		4e-04
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		4e-04
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		4e-04
3iok_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		4e-04
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		4e-04
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		4e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		4e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		4e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		5e-04
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		5e-04
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		5e-04
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		5e-04
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		5e-04
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		5e-04
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		5e-04
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		5e-04
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		5e-04
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		5e-04
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		5e-04
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		6e-04
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		6e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		6e-04
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		6e-04
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		7e-04
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		7e-04
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		7e-04
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		7e-04
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		7e-04
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		7e-04
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		7e-04
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		7e-04
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		7e-04
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		8e-04
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		8e-04
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		8e-04
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		8e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 5/226 (2%)
Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H ++L+L G C+     +LV+  +  G++   +   P+    PL    R +IA+     L
Sbjct: 94  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQ-PPLDWPKRQRIALGSARGL 152
Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAP 123
           AYLH      I+ R+ K + IL +EE  A + DF L+  +   + H+   V GT+G+ AP
Sbjct: 153 AYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAP 212
Query: 124 EYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEI 183
           EY+ TG  +EK++            TG    DL +  +D      +++K   ++ +   +
Sbjct: 213 EYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEAL 272
Query: 184 VDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL 229
           VD     D+    K++++    QV   C + SP +RP M +V + L
Sbjct: 273 VDV----DLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 314

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 5/226 (2%)
Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H ++L+L G C+     +LV+  +  G++   +   P+    PL    R +IA+     L
Sbjct: 86  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQ-PPLDWPKRQRIALGSARGL 144
Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAP 123
           AYLH      I+ R+ K + IL +EE  A + DF L+  +   + H+   V G +G+ AP
Sbjct: 145 AYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAP 204
Query: 124 EYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEI 183
           EY+ TG  +EK++            TG    DL +  +D      +++K   ++ +   +
Sbjct: 205 EYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEAL 264
Query: 184 VDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL 229
           VD     D+    K++++    QV   C + SP +RP M +V + L
Sbjct: 265 VDV----DLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 306

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H H++ LIG C E    IL+++ ++ G L   + G+  P    +  + RL+I +     L
Sbjct: 94  HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMS-MSWEQRLEICIGAARGL 152
Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPE-GETHITDTVMGTLGYCA 122
            YLH    R I+ R+ K+  IL +E  V K+ DF +S    E G+TH+   V GTLGY  
Sbjct: 153 HYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYID 209
Query: 123 PEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTE 182
           PEY   G   EKS+                 S +V+ +   +   +E+      + +  +
Sbjct: 210 PEYFIKGRLTEKSDVYSFGVVLFEVLCA--RSAIVQSLPREMVNLAEWAVESHNNGQLEQ 267
Query: 183 IVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR 234
           IVD  + + +    + + L        +C+  S  DRPSM DV  KL    R
Sbjct: 268 IVDPNLADKI----RPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 105/232 (45%), Gaps = 11/232 (4%)
Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H H++ LIG C E    IL+++ ++ G L   + G+  P    +  + RL+I +     L
Sbjct: 94  HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMS-MSWEQRLEICIGAARGL 152
Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPE-GETHITDTVMGTLGYCA 122
            YLH    R I+ R+ K+  IL +E  V K+ DF +S    E  +TH+   V GTLGY  
Sbjct: 153 HYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYID 209
Query: 123 PEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTE 182
           PEY   G   EKS+                 S +V+ +   +   +E+      + +  +
Sbjct: 210 PEYFIKGRLTEKSDVYSFGVVLFEVLCA--RSAIVQSLPREMVNLAEWAVESHNNGQLEQ 267
Query: 183 IVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR 234
           IVD  + + +    + + L        +C+  S  DRPSM DV  KL    R
Sbjct: 268 IVDPNLADKI----RPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H +I+  +G   + P   +V E +  G+L+ R+L       E L  + RL +A D+ 
Sbjct: 90  RLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLY-RLLHKSGAR-EQLDERRRLSMAYDVA 147
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             + YLH   P PIV RN K+  +L +++   K+ DF LS  +       + +  GT  +
Sbjct: 148 KGMNYLHNRNP-PIVHRNLKSPNLLVDKKYTVKVCDFGLS-RLKASTFLSSKSAAGTPEW 205
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +R    NEKS+
Sbjct: 206 MAPEVLRDEPSNEKSD 221

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H +I+  +G   + P   +V E +  G+L+ R+L       E L  + RL +A D+ 
Sbjct: 90  RLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLY-RLLHKSGAR-EQLDERRRLSMAYDVA 147
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             + YLH   P PIV R+ K+  +L +++   K+ DF LS  +       +    GT  +
Sbjct: 148 KGMNYLHNRNP-PIVHRDLKSPNLLVDKKYTVKVCDFGLS-RLKASXFLXSKXAAGTPEW 205
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +R    NEKS+
Sbjct: 206 MAPEVLRDEPSNEKSD 221

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 36/239 (15%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++SH  +++L G CLE     LVFE +++G L D  L   +  F    L   L + +D+ 
Sbjct: 78  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSD-YLRTQRGLFAAETL---LGMCLDVC 133
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AYL       ++ R+      L  E  V K+ DF ++  + + +   +      + +
Sbjct: 134 EGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 190
Query: 121 CAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            +PE      ++ KS+              W    L+ +V      FSE  K  +E+   
Sbjct: 191 ASPEVFSFSRYSSKSDV-------------WSFGVLMWEV------FSEG-KIPYENRSN 230
Query: 181 TEIVDHIVVEDVSSIEKEQQLHASA----QVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
           +E     VVED+S+  +  +   ++    Q+   C K+ P DRP+   + ++L +I  S
Sbjct: 231 SE-----VVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAES 284

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 36/239 (15%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++SH  +++L G CLE     LVFE +++G L D  L   +  F    L   L + +D+ 
Sbjct: 58  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSD-YLRTQRGLFAAETL---LGMCLDVC 113
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AYL       ++ R+      L  E  V K+ DF ++  + + +   +      + +
Sbjct: 114 EGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 170
Query: 121 CAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            +PE      ++ KS+              W    L+ +V      FSE  K  +E+   
Sbjct: 171 ASPEVFSFSRYSSKSDV-------------WSFGVLMWEV------FSEG-KIPYENRSN 210
Query: 181 TEIVDHIVVEDVSSIEKEQQLHASA----QVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
           +E     VVED+S+  +  +   ++    Q+   C K+ P DRP+   + ++L +I  S
Sbjct: 211 SE-----VVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAES 264

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 18  PIPILVFESVQYGTLWDRILGAPQPHFE-PLLLKHRLKIAMDIVHALAYLHFGFPRPIVF 76
           P+P +V E V   TL D +      H E P+  K  +++  D   AL + H      I+ 
Sbjct: 89  PLPYIVMEYVDGVTLRDIV------HTEGPMTPKRAIEVIADACQALNFSHQNG---IIH 139
Query: 77  RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT--VMGTLGYCAPEYMRTGVFNEK 134
           R+ K + I+ +  N  K+ DF ++ +I +    +T T  V+GT  Y +PE  R    + +
Sbjct: 140 RDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDAR 199
Query: 135 SN 136
           S+
Sbjct: 200 SD 201

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 36/239 (15%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++SH  +++L G CLE     LVFE +++G L D  L   +  F    L   L + +D+ 
Sbjct: 56  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSD-YLRTQRGLFAAETL---LGMCLDVC 111
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AYL       ++ R+      L  E  V K+ DF ++  + + +   +      + +
Sbjct: 112 EGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 168
Query: 121 CAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            +PE      ++ KS+              W    L+ +V      FSE  K  +E+   
Sbjct: 169 ASPEVFSFSRYSSKSDV-------------WSFGVLMWEV------FSEG-KIPYENRSN 208
Query: 181 TEIVDHIVVEDVSSIEKEQQLHASA----QVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
           +E     VVED+S+  +  +   ++    Q+   C K+ P DRP+   + ++L +I  S
Sbjct: 209 SE-----VVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAES 262

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 18  PIPILVFESVQYGTLWDRILGAPQPHFE-PLLLKHRLKIAMDIVHALAYLHFGFPRPIVF 76
           P+P +V E V   TL D +      H E P+  K  +++  D   AL + H      I+ 
Sbjct: 89  PLPYIVMEYVDGVTLRDIV------HTEGPMTPKRAIEVIADACQALNFSHQNG---IIH 139
Query: 77  RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT--VMGTLGYCAPEYMRTGVFNEK 134
           R+ K + I+ +  N  K+ DF ++ +I +    +T T  V+GT  Y +PE  R    + +
Sbjct: 140 RDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDAR 199
Query: 135 SN 136
           S+
Sbjct: 200 SD 201

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 18  PIPILVFESVQYGTLWDRILGAPQPHFE-PLLLKHRLKIAMDIVHALAYLHFGFPRPIVF 76
           P+P +V E V   TL D +      H E P+  K  +++  D   AL + H      I+ 
Sbjct: 89  PLPYIVMEYVDGVTLRDIV------HTEGPMTPKRAIEVIADACQALNFSHQNG---IIH 139
Query: 77  RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT--VMGTLGYCAPEYMRTGVFNEK 134
           R+ K + I+ +  N  K+ DF ++ +I +    +T T  V+GT  Y +PE  R    + +
Sbjct: 140 RDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDAR 199
Query: 135 SN 136
           S+
Sbjct: 200 SD 201

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 18  PIPILVFESVQYGTLWDRILGAPQPHFE-PLLLKHRLKIAMDIVHALAYLHFGFPRPIVF 76
           P+P +V E V   TL D +      H E P+  K  +++  D   AL + H      I+ 
Sbjct: 89  PLPYIVMEYVDGVTLRDIV------HTEGPMTPKRAIEVIADACQALNFSHQNG---IIH 139
Query: 77  RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT--VMGTLGYCAPEYMRTGVFNEK 134
           R+ K + I+ +  N  K+ DF ++ +I +    +T T  V+GT  Y +PE  R    + +
Sbjct: 140 RDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDAR 199
Query: 135 SN 136
           S+
Sbjct: 200 SD 201

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H ++++L G  L  P+  +V E    G+L DR L   Q HF   LL    + A+ +  
Sbjct: 72  LDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDR-LRKHQGHF---LLGTLSRYAVQVAE 126
Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLG 119
            + YL     +  + R+     +L    ++ K+ DF L  ++P+ + H  + +       
Sbjct: 127 GMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFA 183
Query: 120 YCAPEYMRTGVFNEKSN 136
           +CAPE ++T  F+  S+
Sbjct: 184 WCAPESLKTRTFSHASD 200

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H ++++L G  L  P+  +V E    G+L DR L   Q HF   LL    + A+ +  
Sbjct: 72  LDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDR-LRKHQGHF---LLGTLSRYAVQVAE 126
Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLG 119
            + YL     +  + R+     +L    ++ K+ DF L  ++P+ + H  + +       
Sbjct: 127 GMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFA 183
Query: 120 YCAPEYMRTGVFNEKSN 136
           +CAPE ++T  F+  S+
Sbjct: 184 WCAPESLKTRTFSHASD 200

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 36/239 (15%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++SH  +++L G CLE     LVFE +++G L D  L   +  F    L   L + +D+ 
Sbjct: 58  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSD-YLRTQRGLFAAETL---LGMCLDVC 113
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AYL       ++ R+      L  E  V K+ DF ++  + + +   +      + +
Sbjct: 114 EGMAYLE---EASVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 170
Query: 121 CAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            +PE      ++ KS+              W    L+ +V      FSE  K  +E+   
Sbjct: 171 ASPEVFSFSRYSSKSDV-------------WSFGVLMWEV------FSEG-KIPYENRSN 210
Query: 181 TEIVDHIVVEDVSSIEKEQQLHASA----QVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
           +E     VVED+S+  +  +   ++    Q+   C K+ P DRP+   + ++L  I  S
Sbjct: 211 SE-----VVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAAIAAS 264

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H ++++L G  L  P+  +V E    G+L DR L   Q HF   LL    + A+ +  
Sbjct: 68  LDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDR-LRKHQGHF---LLGTLSRYAVQVAE 122
Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLG 119
            + YL     +  + R+     +L    ++ K+ DF L  ++P+ + H  + +       
Sbjct: 123 GMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFA 179
Query: 120 YCAPEYMRTGVFNEKSN 136
           +CAPE ++T  F+  S+
Sbjct: 180 WCAPESLKTRTFSHASD 196

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 18  PIPILVFESVQYGTLWDRILGAPQPHFE-PLLLKHRLKIAMDIVHALAYLHFGFPRPIVF 76
           P+P +V E V   TL D +      H E P+  K  +++  D   AL + H      I+ 
Sbjct: 106 PLPYIVMEYVDGVTLRDIV------HTEGPMTPKRAIEVIADACQALNFSHQNG---IIH 156
Query: 77  RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT--VMGTLGYCAPEYMRTGVFNEK 134
           R+ K + I+ +  N  K+ DF ++ +I +    +T T  V+GT  Y +PE  R    + +
Sbjct: 157 RDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDAR 216
Query: 135 SN 136
           S+
Sbjct: 217 SD 218

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H ++++L G  L  P+  +V E    G+L DR L   Q HF   LL    + A+ +  
Sbjct: 68  LDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDR-LRKHQGHF---LLGTLSRYAVQVAE 122
Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLG 119
            + YL     +  + R+     +L    ++ K+ DF L  ++P+ + H  + +       
Sbjct: 123 GMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFA 179
Query: 120 YCAPEYMRTGVFNEKSN 136
           +CAPE ++T  F+  S+
Sbjct: 180 WCAPESLKTRTFSHASD 196

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRIL---GAPQPHFEPLLLKHRLKIAMDIV 60
           H ++++L+G   +     LV+  +  G+L DR+    G P     PL    R KIA    
Sbjct: 89  HENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-----PLSWHMRCKIAQGAA 143
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPE-GETHITDTVMGTLG 119
           + + +LH       + R+ K++ IL +E   AK+ DF L+ +  +  +T +   ++GT  
Sbjct: 144 NGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTA 200
Query: 120 YCAPEYMR 127
           Y APE +R
Sbjct: 201 YMAPEALR 208

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H ++++L G  L  P+  +V E    G+L DR L   Q HF   LL    + A+ +  
Sbjct: 78  LDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDR-LRKHQGHF---LLGTLSRYAVQVAE 132
Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLG 119
            + YL     +  + R+     +L    ++ K+ DF L  ++P+ + H  + +       
Sbjct: 133 GMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQEHRKVPFA 189
Query: 120 YCAPEYMRTGVFNEKSN 136
           +CAPE ++T  F+  S+
Sbjct: 190 WCAPESLKTRTFSHASD 206

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H ++++L G  L  P+  +V E    G+L DR L   Q HF   LL    + A+ +  
Sbjct: 68  LDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDR-LRKHQGHF---LLGTLSRYAVQVAE 122
Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLG 119
            + YL     +  + R+     +L    ++ K+ DF L  ++P+ + H  + +       
Sbjct: 123 GMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQEHRKVPFA 179
Query: 120 YCAPEYMRTGVFNEKSN 136
           +CAPE ++T  F+  S+
Sbjct: 180 WCAPESLKTRTFSHASD 196

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H ++++L G  L  P+  +V E    G+L DR L   Q HF   LL    + A+ +  
Sbjct: 78  LDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDR-LRKHQGHF---LLGTLSRYAVQVAE 132
Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLG 119
            + YL     +  + R+     +L    ++ K+ DF L  ++P+ + H  + +       
Sbjct: 133 GMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFA 189
Query: 120 YCAPEYMRTGVFNEKSN 136
           +CAPE ++T  F+  S+
Sbjct: 190 WCAPESLKTRTFSHASD 206

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 36/239 (15%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++SH  +++L G CLE     LVFE +++G L D  L   +  F    L   L + +D+ 
Sbjct: 61  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSD-YLRTQRGLFAAETL---LGMCLDVC 116
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AYL       ++ R+      L  E  V K+ DF ++  + + +   +      + +
Sbjct: 117 EGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 173
Query: 121 CAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            +PE      ++ KS+              W    L+ +V      FSE  K  +E+   
Sbjct: 174 ASPEVFSFSRYSSKSDV-------------WSFGVLMWEV------FSEG-KIPYENRSN 213
Query: 181 TEIVDHIVVEDVSSIEKEQQLHASA----QVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
           +E     VVED+S+  +  +   ++    Q+   C ++ P DRP+   + ++L +I  S
Sbjct: 214 SE-----VVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRIL---GAPQPHFEPLLLKHRLKIAMDIV 60
           H ++++L+G   +     LV+  +  G+L DR+    G P     PL    R KIA    
Sbjct: 89  HENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-----PLSWHMRCKIAQGAA 143
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPE-GETHITDTVMGTLG 119
           + + +LH       + R+ K++ IL +E   AK+ DF L+ +  +  +T +   ++GT  
Sbjct: 144 NGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXRIVGTTA 200
Query: 120 YCAPEYMR 127
           Y APE +R
Sbjct: 201 YMAPEALR 208

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 18  PIPILVFESVQYGTLWDRILGAPQPHFE-PLLLKHRLKIAMDIVHALAYLHFGFPRPIVF 76
           P+P +V E V   TL D +      H E P+  K  +++  D   AL + H      I+ 
Sbjct: 89  PLPYIVMEYVDGVTLRDIV------HTEGPMTPKRAIEVIADACQALNFSHQNG---IIH 139
Query: 77  RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT--VMGTLGYCAPEYMRTGVFNEK 134
           R+ K + IL +  N  K+ DF ++ +I +    +  T  V+GT  Y +PE  R    + +
Sbjct: 140 RDVKPANILISATNAVKVVDFGIARAIADSGNSVXQTAAVIGTAQYLSPEQARGDSVDAR 199
Query: 135 SN 136
           S+
Sbjct: 200 SD 201

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 15/131 (11%)
Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           ++SH +I+KL     ETP  I LV E V  G L+DRI+   + ++        +K    I
Sbjct: 104 RLSHPNIIKL-KEIFETPTEISLVLELVTGGELFDRIV--EKGYYSERDAADAVK---QI 157
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNE---ENVAKLFDFSLSISIPEGETHITDTVMG 116
           + A+AYLH      IV R+ K   +L+     +   K+ DF LS  I E +  +  TV G
Sbjct: 158 LEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLS-KIVEHQV-LMKTVCG 212
Query: 117 TLGYCAPEYMR 127
           T GYCAPE +R
Sbjct: 213 TPGYCAPEILR 223

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 21/145 (14%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           + H +I+ L G CL+ P   LV E  + G L +R+L   +    P +L   +  A+ I  
Sbjct: 63  LKHPNIIALRGVCLKEPNLCLVMEFARGGPL-NRVLSGKR--IPPDIL---VNWAVQIAR 116
Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEE--------NVAKLFDFSLSISIPEGETHITD- 112
            + YLH     PI+ R+ K+S IL  ++         + K+ DF L+      E H T  
Sbjct: 117 GMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA-----REWHRTTK 171
Query: 113 -TVMGTLGYCAPEYMRTGVFNEKSN 136
            +  G   + APE +R  +F++ S+
Sbjct: 172 MSAAGAYAWMAPEVIRASMFSKGSD 196

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 119 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 169
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 170 LPYVAPELLKRREF 183

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 119 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 169
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 170 LPYVAPELLKRREF 183

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q+ H+++++L+G  +E    + +V E +  G+L D +    +       L   LK ++D+
Sbjct: 61  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL---LKFSLDV 117
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
             A+ YL        V R+     +L +E+NVAK+ DF L+    +  +   DT    + 
Sbjct: 118 CEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT----KEASSTQDTGKLPVK 170
Query: 120 YCAPEYMRTGVFNEKSN 136
           + APE +R   F+ KS+
Sbjct: 171 WTAPEALREAAFSTKSD 187

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 119 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 169
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 170 LPYVAPELLKRREF 183

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 120 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 170
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 171 LPYVAPELLKRREF 184

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRIL---GAPQPHFEPLLLKHRLKIAMDIV 60
           H ++++L+G   +     LV+  +  G+L DR+    G P     PL    R KIA    
Sbjct: 83  HENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-----PLSWHMRCKIAQGAA 137
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPE-GETHITDTVMGTLG 119
           + + +LH       + R+ K++ IL +E   AK+ DF L+ +  +  +  +   ++GT  
Sbjct: 138 NGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXXRIVGTTA 194
Query: 120 YCAPEYMR 127
           Y APE +R
Sbjct: 195 YMAPEALR 202

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 119 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGT 169
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 170 LPYVAPELLKRREF 183

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRIL---GAPQPHFEPLLLKHRLKIAMDIV 60
           H ++++L+G   +     LV+     G+L DR+    G P     PL    R KIA    
Sbjct: 80  HENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTP-----PLSWHXRCKIAQGAA 134
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT-VMGTLG 119
           + + +LH       + R+ K++ IL +E   AK+ DF L+ +  +    +  + ++GT  
Sbjct: 135 NGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTA 191
Query: 120 YCAPEYMR 127
           Y APE +R
Sbjct: 192 YXAPEALR 199

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 60  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 117
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 118 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 168
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 169 LPYVAPELLKRREF 182

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 119 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 170 LPYVAPELLKRREF 183

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 119 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 170 LPYVAPELLKRREF 183

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 119 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 170 LPYVAPELLKRREF 183

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 119 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 170 LPYVAPELLKRREF 183

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 119 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 170 LPYVAPELLKRREF 183

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 119 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 170 LPYVAPELLKRREF 183

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 36/239 (15%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++SH  +++L G CLE     LV E +++G L D  L   +  F    L   L + +D+ 
Sbjct: 59  KLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSD-YLRTQRGLFAAETL---LGMCLDVC 114
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AYL       ++ R+      L  E  V K+ DF ++  + + +   +      + +
Sbjct: 115 EGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 171
Query: 121 CAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            +PE      ++ KS+              W    L+ +V      FSE  K  +E+   
Sbjct: 172 ASPEVFSFSRYSSKSDV-------------WSFGVLMWEV------FSEG-KIPYENRSN 211
Query: 181 TEIVDHIVVEDVSSIEKEQQLHASA----QVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
           +E     VVED+S+  +  +   ++    Q+   C ++ P DRP+   + ++L +I  S
Sbjct: 212 SE-----VVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 120 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 171 LPYVAPELLKRREF 184

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 119 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 170 LPYVAPELLKRREF 183

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+SH +I+ +I    E     LV E ++  TL + I    + H  PL +   +     I+
Sbjct: 67  QLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYI----ESHG-PLSVDTAINFTNQIL 121
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             + + H      IV R+ K   IL +     K+FDF ++ ++ E     T+ V+GT+ Y
Sbjct: 122 DGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQY 178
Query: 121 CAPEYMRTGVFNE 133
            +PE  +    +E
Sbjct: 179 FSPEQAKGEATDE 191

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 61  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 118
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 119 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 169
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 170 LPYVAPELLKRREF 183

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 120 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 171 LPYVAPELLKRREF 184

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 120 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 171 LPYVAPELLKRREF 184

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 2   MSHNHILKLIGCCLETPIPIL--VFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H HI+K  GCC +     L  V E V  G+L D +   P+     + L   L  A  I
Sbjct: 73  LYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYL---PR---HSIGLAQLLLFAQQI 126
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH 109
              +AYLH    +  + RN     +L + + + K+ DF L+ ++PEG  +
Sbjct: 127 CEGMAYLH---AQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY 173

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 120 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 171 LPYVAPELLKRREF 184

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 120 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 171 LPYVAPELLKRREF 184

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 120 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 171 LPYVAPELLKRREF 184

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI---LGAPQPHFEPLLLKHRLKIAMD 58
           ++H +++K  G   E  I  L  E    G L+DRI   +G P+P  +     H+L   + 
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF--HQLMAGVV 119
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP-EGETHITDTVMGT 117
            +H +   H         R+ K   +L +E +  K+ DF L+          + + + GT
Sbjct: 120 YLHGIGITH---------RDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGT 170
Query: 118 LGYCAPEYMRTGVF 131
           L Y APE ++   F
Sbjct: 171 LPYVAPELLKRREF 184

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 2   MSHNHILKLIGCCLETPIPIL--VFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H HI+K  GCC +     L  V E V  G+L D +   P+     + L   L  A  I
Sbjct: 73  LYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYL---PR---HSIGLAQLLLFAQQI 126
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH 109
              +AYLH    +  + RN     +L + + + K+ DF L+ ++PEG  +
Sbjct: 127 CEGMAYLH---SQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY 173

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q+ H+++++L+G  +E    + +V E +  G+L D +    +       L   LK ++D+
Sbjct: 70  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL---LKFSLDV 126
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
             A+ YL        V R+     +L +E+NVAK+ DF L+    +  +   DT    + 
Sbjct: 127 CEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT----KEASSTQDTGKLPVK 179
Query: 120 YCAPEYMRTGVFNEKSN 136
           + APE +R   F+ KS+
Sbjct: 180 WTAPEALREKKFSTKSD 196

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q+ H+++++L+G  +E    + +V E +  G+L D +    +       L   LK ++D+
Sbjct: 55  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL---LKFSLDV 111
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
             A+ YL        V R+     +L +E+NVAK+ DF L+    +  +   DT    + 
Sbjct: 112 CEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT----KEASSTQDTGKLPVK 164
Query: 120 YCAPEYMRTGVFNEKSN 136
           + APE +R   F+ KS+
Sbjct: 165 WTAPEALREKKFSTKSD 181

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 2   MSHNHILKLIGCCLETPIPIL--VFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H HI+K  GCC +     L  V E V  G+L D +   P+     + L   L  A  I
Sbjct: 90  LYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYL---PR---HSIGLAQLLLFAQQI 143
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEG 106
              +AYLH    +  + R+     +L + + + K+ DF L+ ++PEG
Sbjct: 144 CEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG 187

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q+ H+++++L+G  +E    + +V E +  G+L D +    +       L   LK ++D+
Sbjct: 242 QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL---LKFSLDV 298
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
             A+ YL        V R+     +L +E+NVAK+ DF L+    +  +   DT    + 
Sbjct: 299 CEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT----KEASSTQDTGKLPVK 351
Query: 120 YCAPEYMRTGVFNEKSN 136
           + APE +R   F+ KS+
Sbjct: 352 WTAPEALREKKFSTKSD 368

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 60  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 115
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + RN + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 116 EGMAFIE---ERNYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 172
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 173 TAPEAINYGTFTIKSD 188

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 119
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 120 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPIKW 176
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 177 TAPEAINYGTFTIKSD 192

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 69  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 124
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGT 117
              + YL  G  R  + RN  T  IL   EN  K+ DF L+  +P+ + +  + +     
Sbjct: 125 CKGMEYL--GTKR-YIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESP 181
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 182 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 232
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 233 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 292
Query: 235 SLS 237
           +++
Sbjct: 293 NMA 295

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
            H HI+ LI     +    LVF+ ++ G L+D +          L  K    I   ++ A
Sbjct: 158 GHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKV-----ALSEKETRSIMRSLLEA 212
Query: 63  LAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCA 122
           +++LH      IV R+ K   IL ++    +L DF  S  +  GE      + GT GY A
Sbjct: 213 VSFLH---ANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEK--LRELCGTPGYLA 267
Query: 123 PEYMR 127
           PE ++
Sbjct: 268 PEILK 272

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 119
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 120 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 176
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 177 TAPEAINYGTFTIKSD 192

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 65  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 120
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 121 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 177
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 178 TAPEAINYGTFTIKSD 193

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 2   MSHNHILKLIGCCLETPIPI--LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H HI+K  GCC +       LV E V  G+L D +        + LL   ++   M  
Sbjct: 67  LYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRHCVGLAQLLLFAQQICEGMAY 126
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH 109
           +HA  Y+H    R +  RN     +L + + + K+ DF L+ ++PEG  +
Sbjct: 127 LHAQHYIH----RALAARN-----VLLDNDRLVKIGDFGLAKAVPEGHEY 167

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 2   MSHNHILKLIGCCLETPIPI--LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H HI+K  GCC +       LV E V  G+L D +        + LL   ++   M  
Sbjct: 68  LYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRHCVGLAQLLLFAQQICEGMAY 127
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH 109
           +HA  Y+H    R +  RN     +L + + + K+ DF L+ ++PEG  +
Sbjct: 128 LHAQHYIH----RALAARN-----VLLDNDRLVKIGDFGLAKAVPEGHEY 168

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 66  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 121
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 122 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 178
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 179 TAPEAINYGTFTIKSD 194

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 119
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 120 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 176
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 177 TAPEAINYGTFTIKSD 192

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 72  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 127
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 128 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 184
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 185 TAPEAINYGTFTIKSD 200

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 59  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 114
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 115 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 171
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 172 TAPEAINYGTFTIKSD 187

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 119
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 120 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 176
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 177 TAPEAINYGTFTIKSD 192

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 70  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 125
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 126 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 182
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 183 TAPEAINYGTFTIKSD 198

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 69  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 124
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 125 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 181
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 182 TAPEAINYGTFTIKSD 197

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 70  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 125
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 126 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 182
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 183 TAPEAINYGTFTIKSD 198

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 73  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 128
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 129 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 185
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 186 TAPEAINYGTFTIKSD 201

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I+  E ++ G+L D +     P    L +   L +A  I 
Sbjct: 74  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFL---KTPSGIKLTINKLLDMAAQIA 129
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 130 EGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 186
Query: 121 CAPEYMRTGVFNEKSN 136
            APE +  G F  KS+
Sbjct: 187 TAPEAINYGTFTIKSD 202

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 98/235 (41%), Gaps = 31/235 (13%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H ++++L+G C   P   +V E + YG L D +    +     ++L   L +A  I 
Sbjct: 84  EIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVL---LYMATQIS 140
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG-TLG 119
            A+ YL     +  + R+      L  E +V K+ DF LS  +  G+T+         + 
Sbjct: 141 SAMEYLE---KKNFIHRDLAARNCLVGENHVVKVADFGLS-RLMTGDTYTAHAGAKFPIK 196
Query: 120 YCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
           + APE +    F+ KS+              W    L+ ++       + Y  + +    
Sbjct: 197 WTAPESLAYNTFSIKSDV-------------WAFGVLLWEI-------ATYGMSPYPGID 236
Query: 180 FTEIVDHIVVEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIY 233
            +++ D  ++E    +E+ +       ++   C K SPADRPS  +  +    ++
Sbjct: 237 LSQVYD--LLEKGYRMEQPEGCPPKVYELMRACWKWSPADRPSFAETHQAFETMF 289

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWD--RILGAPQPHFEPLLLKHRLKIAMD 58
           Q SH +I++LIG C +     +V E VQ G      R  GA       L +K  L++  D
Sbjct: 168 QYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGA------RLRVKTLLQMVGD 221
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT- 117
               + YL     +  + R+      L  E+NV K+ DF +S    +G    +  +    
Sbjct: 222 AAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAASGGLRQVP 278
Query: 118 LGYCAPEYMRTGVFNEKSN 136
           + + APE +  G ++ +S+
Sbjct: 279 VKWTAPEALNYGRYSSESD 297

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 21/116 (18%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE-----------PLLLK 50
           + H HI++  G C E    ++VFE +++G L +R L +  P  +           PL L 
Sbjct: 100 LQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL-NRFLRSHGPDAKLLAGGEDVAPGPLGLG 158
Query: 51  HRLKIAMDIVHALAY---LHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI 103
             L +A  +   + Y   LHF      V R+  T   L  +  V K+ DF +S  I
Sbjct: 159 QLLAVASQVAAGMVYLAGLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDI 208

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 21/116 (18%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE-----------PLLLK 50
           + H HI++  G C E    ++VFE +++G L +R L +  P  +           PL L 
Sbjct: 71  LQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL-NRFLRSHGPDAKLLAGGEDVAPGPLGLG 129
Query: 51  HRLKIAMDIVHALAY---LHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI 103
             L +A  +   + Y   LHF      V R+  T   L  +  V K+ DF +S  I
Sbjct: 130 QLLAVASQVAAGMVYLAGLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDI 179

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I+  L ++H  F   +V+R+ K + IL +E    ++ D  L+    + + H +   +
Sbjct: 298 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---V 351
Query: 116 GTLGYCAPEYMRTGVFNEKS 135
           GT GY APE ++ GV  + S
Sbjct: 352 GTHGYMAPEVLQKGVAYDSS 371

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I+  L ++H  F   +V+R+ K + IL +E    ++ D  L+    + + H +   +
Sbjct: 298 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---V 351
Query: 116 GTLGYCAPEYMRTGVFNEKS 135
           GT GY APE ++ GV  + S
Sbjct: 352 GTHGYMAPEVLQKGVAYDSS 371

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I+  L ++H  F   +V+R+ K + IL +E    ++ D  L+    + + H +   +
Sbjct: 298 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---V 351
Query: 116 GTLGYCAPEYMRTGVFNEKS 135
           GT GY APE ++ GV  + S
Sbjct: 352 GTHGYMAPEVLQKGVAYDSS 371

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I+  L ++H  F   +V+R+ K + IL +E    ++ D  L+    + + H +   +
Sbjct: 297 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---V 350
Query: 116 GTLGYCAPEYMRTGVFNEKS 135
           GT GY APE ++ GV  + S
Sbjct: 351 GTHGYMAPEVLQKGVAYDSS 370

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D + G    +   L L   + +A  I 
Sbjct: 59  KLRHEKLVQLYAVVSEEPIXI-VTEYMSKGSLLDFLKGETGKY---LRLPQLVDMAAQIA 114
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L+  I + E          + +
Sbjct: 115 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKW 171
Query: 121 CAPEYMRTGVFNEKSN 136
            APE    G F  KS+
Sbjct: 172 TAPEAALYGRFTIKSD 187

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 21/116 (18%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE-----------PLLLK 50
           + H HI++  G C E    ++VFE +++G L +R L +  P  +           PL L 
Sbjct: 77  LQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL-NRFLRSHGPDAKLLAGGEDVAPGPLGLG 135
Query: 51  HRLKIAMDIVHALAY---LHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI 103
             L +A  +   + Y   LHF      V R+  T   L  +  V K+ DF +S  I
Sbjct: 136 QLLAVASQVAAGMVYLAGLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDI 185

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWD--RILGAPQPHFEPLLLKHRLKIAMD 58
           Q SH +I++LIG C +     +V E VQ G      R  GA       L +K  L++  D
Sbjct: 168 QYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGA------RLRVKTLLQMVGD 221
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT- 117
               + YL     +  + R+      L  E+NV K+ DF +S    +G    +  +    
Sbjct: 222 AAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVP 278
Query: 118 LGYCAPEYMRTGVFNEKSN 136
           + + APE +  G ++ +S+
Sbjct: 279 VKWTAPEALNYGRYSSESD 297

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 71  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QAHAERIDHIKLLQYTSQI 126
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 127 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 183
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 184 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 234
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 235 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 294
Query: 235 SLS 237
           +++
Sbjct: 295 NMA 297

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D + G    +   L L   + +A  I 
Sbjct: 69  KLRHEKLVQLYAVVSEEPIYI-VIEYMSKGSLLDFLKGEMGKY---LRLPQLVDMAAQIA 124
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L+  I + E          + +
Sbjct: 125 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKW 181
Query: 121 CAPEYMRTGVFNEKSN 136
            APE    G F  KS+
Sbjct: 182 TAPEAALYGRFTIKSD 197

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 37  LGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFD 96
           L A +  FE   +K  + IA      + YLH    + I+ R+ K++ I  +E+N  K+ D
Sbjct: 110 LHASETKFE---MKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGD 163
Query: 97  FSLSISIPE-GETHITDTVMGTLGYCAPEYMR 127
           F L+        +H  + + G++ + APE +R
Sbjct: 164 FGLATEKSRWSGSHQFEQLSGSILWMAPEVIR 195

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 37  LGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFD 96
           L A +  FE   +K  + IA      + YLH    + I+ R+ K++ I  +E+N  K+ D
Sbjct: 98  LHASETKFE---MKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGD 151
Query: 97  FSL-SISIPEGETHITDTVMGTLGYCAPEYMR 127
           F L ++      +H  + + G++ + APE +R
Sbjct: 152 FGLATVKSRWSGSHQFEQLSGSILWMAPEVIR 183

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 37  LGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFD 96
           L A +  FE   +K  + IA      + YLH    + I+ R+ K++ I  +E+N  K+ D
Sbjct: 110 LHASETKFE---MKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGD 163
Query: 97  FSLSISIPE-GETHITDTVMGTLGYCAPEYMR 127
           F L+        +H  + + G++ + APE +R
Sbjct: 164 FGLATEKSRWSGSHQFEQLSGSILWMAPEVIR 195

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D + G    +   L L   + +A  I 
Sbjct: 235 KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKY---LRLPQLVDMAAQIA 290
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L+  I + E          + +
Sbjct: 291 SGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 347
Query: 121 CAPEYMRTGVFNEKSN 136
            APE    G F  KS+
Sbjct: 348 TAPEAALYGRFTIKSD 363

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D + G    +   L L   + +A  I 
Sbjct: 235 KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKY---LRLPQLVDMAAQIA 290
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L+  I + E          + +
Sbjct: 291 SGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 347
Query: 121 CAPEYMRTGVFNEKSN 136
            APE    G F  KS+
Sbjct: 348 TAPEAALYGRFTIKSD 363

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H ++++L+G C   P   ++ E + YG L D +    +     ++L   L +A  I 
Sbjct: 272 EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVL---LYMATQIS 328
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG-TLG 119
            A+ YL     +  + RN      L  E ++ K+ DF LS  +  G+T+         + 
Sbjct: 329 SAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIK 384
Query: 120 YCAPEYMRTGVFNEKSN 136
           + APE +    F+ KS+
Sbjct: 385 WTAPESLAYNKFSIKSD 401

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H ++++L+G C   P   ++ E + YG L D +    +     ++L   L +A  I 
Sbjct: 311 EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQIS 367
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG-TLG 119
            A+ YL     +  + RN      L  E ++ K+ DF LS  +  G+T+         + 
Sbjct: 368 SAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIK 423
Query: 120 YCAPEYMRTGVFNEKSN 136
           + APE +    F+ KS+
Sbjct: 424 WTAPESLAYNKFSIKSD 440

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D + G    +   L L   + +A  I 
Sbjct: 235 KLRHEKLVQLYAVVSEEPIYI-VGEYMSKGSLLDFLKGETGKY---LRLPQLVDMAAQIA 290
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L+  I + E          + +
Sbjct: 291 SGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 347
Query: 121 CAPEYMRTGVFNEKSN 136
            APE    G F  KS+
Sbjct: 348 TAPEAALYGRFTIKSD 363

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 72  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 127
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 128 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 184
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 185 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 235
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 236 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 295
Query: 235 SLS 237
           +++
Sbjct: 296 NMA 298

>pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 86  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 141
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 142 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 198
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 199 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 249
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 250 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 309
Query: 235 SLS 237
           +++
Sbjct: 310 NMA 312

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 73  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 128
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 129 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 185
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 186 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 236
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 237 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 296
Query: 235 SLS 237
           +++
Sbjct: 297 NMA 299

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 71  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 126
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 127 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 183
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 184 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 234
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 235 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 294
Query: 235 SLS 237
           +++
Sbjct: 295 NMA 297

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 68  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 123
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 124 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 180
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 181 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 231
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 232 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 291
Query: 235 SLS 237
           +++
Sbjct: 292 NMA 294

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 74  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 129
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 130 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 186
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 187 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 237
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 238 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 297
Query: 235 SLS 237
           +++
Sbjct: 298 NMA 300

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 68  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 123
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 124 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESP 180
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 181 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 231
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 232 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 291
Query: 235 SLS 237
           +++
Sbjct: 292 NMA 294

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D + G    +   L L   + +A  I 
Sbjct: 69  KLRHEKLVQLYAVVSEEPIYI-VIEYMSKGSLLDFLKGEMGKY---LRLPQLVDMAAQIA 124
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L+  I + E          + +
Sbjct: 125 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 181
Query: 121 CAPEYMRTGVFNEKSN 136
            APE    G F  KS+
Sbjct: 182 TAPEAALYGRFTIKSD 197

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 75  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 130
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 131 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 187
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 188 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 238
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 239 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 298
Query: 235 SLS 237
           +++
Sbjct: 299 NMA 301

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
           A +I   L  LH      IV+R+ K   IL ++    ++ D  L++ +PEG+T      +
Sbjct: 292 AAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT--IKGRV 346
Query: 116 GTLGYCAPEYMRT 128
           GT+GY APE ++ 
Sbjct: 347 GTVGYMAPEVVKN 359

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           ++H  I+++ G   +     ++ + ++ G L+  +L   Q    P+   +    A ++  
Sbjct: 63  VTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFS-LLRKSQRFPNPVAKFY----AAEVCL 117
Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYC 121
           AL YLH    + I++R+ K   IL ++    K+ DF  +  +P+    +T  + GT  Y 
Sbjct: 118 ALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD----VTYXLCGTPDYI 170
Query: 122 APEYMRTGVFNE 133
           APE + T  +N+
Sbjct: 171 APEVVSTKPYNK 182

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL-SISIPEGETHITDTVMG 116
           +I  AL +LH    + I++R+ K   I+ N +   KL DF L   SI +G   +T T  G
Sbjct: 129 EISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGT--VTHTFCG 183
Query: 117 TLGYCAPE-YMRTG 129
           T+ Y APE  MR+G
Sbjct: 184 TIEYMAPEILMRSG 197

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 74  IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT 128
           IV+R+ K   IL ++    ++ D  L++ +PEG+T      +GT+GY APE ++ 
Sbjct: 307 IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT--IKGRVGTVGYMAPEVVKN 359

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 68  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 123
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 124 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 180
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 181 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 231
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 232 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 291
Query: 235 SLS 237
           +++
Sbjct: 292 NMA 294

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D + G    +   L L   + +A  I 
Sbjct: 62  KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKY---LRLPQLVDMAAQIA 117
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L+  I + E          + +
Sbjct: 118 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 174
Query: 121 CAPEYMRTGVFNEKSN 136
            APE    G F  KS+
Sbjct: 175 TAPEAALYGRFTIKSD 190

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 67  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 122
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 123 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 179
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 180 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 230
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 231 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 290
Query: 235 SLS 237
           +++
Sbjct: 291 NMA 293

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 99/238 (41%), Gaps = 23/238 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 86  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 141
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 142 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 198
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 199 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 249
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQI 232
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI
Sbjct: 250 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQI 307

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 101/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 66  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 121
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 122 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 178
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 179 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 229
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 230 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 289
Query: 235 SLS 237
            ++
Sbjct: 290 QMA 292

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 101/243 (41%), Gaps = 23/243 (9%)
Query: 2   MSHNHILKLIGCCLETPIP--ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           + H++I+K  G C         L+ E + YG+L D +    Q H E +     L+    I
Sbjct: 99  LQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQI 154
Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGT 117
              + YL  G  R  + R+  T  IL   EN  K+ DF L+  +P+ +    + +     
Sbjct: 155 CKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESP 211
Query: 118 LGYCAPEYMRTGVFNEKSNXXXXXXXXXXXXTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
           + + APE +    F+  S+             G  + +L   +     P +E+++    D
Sbjct: 212 IFWYAPESLTESKFSVASDVWSF---------GVVLYELFTYIEKSKSPPAEFMRMIGND 262
Query: 178 NRFTEIVDHIV--VEDVSSIEKEQQLHASA-QVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +   IV H++  +++   + +          +  EC  ++   RPS  D+A ++ QI  
Sbjct: 263 KQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 322
Query: 235 SLS 237
            ++
Sbjct: 323 QMA 325

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI  +V E +  G+L D + G    +   L L   + +A  I 
Sbjct: 318 KLRHEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKY---LRLPQLVDMAAQIA 373
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L+  I + E          + +
Sbjct: 374 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 430
Query: 121 CAPEYMRTGVFNEKSN 136
            APE    G F  KS+
Sbjct: 431 TAPEAALYGRFTIKSD 446

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H ++++L+G C   P   ++ E + YG L D +    +     ++L   L +A  I 
Sbjct: 65  EIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVL---LYMATQIS 121
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG-TLG 119
            A+ YL     +  + R+      L  E ++ K+ DF LS  +  G+T+         + 
Sbjct: 122 SAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIK 177
Query: 120 YCAPEYMRTGVFNEKSN 136
           + APE +    F+ KS+
Sbjct: 178 WTAPESLAYNKFSIKSD 194

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           IV  L +LH    R I++R+ K   +L +++   ++ D  L++ +  G+T  T    GT 
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK-TKGYAGTP 353
Query: 119 GYCAPEYM 126
           G+ APE +
Sbjct: 354 GFMAPELL 361

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           IV  L +LH    R I++R+ K   +L +++   ++ D  L++ +  G+T  T    GT 
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK-TKGYAGTP 353
Query: 119 GYCAPEYM 126
           G+ APE +
Sbjct: 354 GFMAPELL 361

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           IV  L +LH    R I++R+ K   +L +++   ++ D  L++ +  G+T  T    GT 
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK-TKGYAGTP 353
Query: 119 GYCAPEYM 126
           G+ APE +
Sbjct: 354 GFMAPELL 361

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLW--------DRILGAPQPHFEPLLLKHRL 53
           + H HI+K  G C+E    I+VFE +++G L         D +L A       L     L
Sbjct: 72  LQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQML 131
Query: 54  KIAMDIVHALAYL---HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS 100
            IA  I   + YL   HF      V R+  T   L  E  + K+ DF +S
Sbjct: 132 HIAQQIAAGMVYLASQHF------VHRDLATRNCLVGENLLVKIGDFGMS 175

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H ++++L+G C   P   ++ E + YG L D +    +     ++L   L +A  I 
Sbjct: 65  EIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVL---LYMATQIS 121
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG-TLG 119
            A+ YL     +  + R+      L  E ++ K+ DF LS  +  G+T+         + 
Sbjct: 122 SAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIK 177
Query: 120 YCAPEYMRTGVFNEKSN 136
           + APE +    F+ KS+
Sbjct: 178 WTAPESLAYNKFSIKSD 194

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D + G    +   L L   + +A  I 
Sbjct: 60  KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKY---LRLPQLVDMAAQIA 115
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L+  I + E          + +
Sbjct: 116 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 172
Query: 121 CAPEYMRTGVFNEKSN 136
            APE    G F  KS+
Sbjct: 173 TAPEAALYGRFTIKSD 188

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H ++++L+G C   P   ++ E + YG L D +    +     ++L   L +A  I 
Sbjct: 70  EIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVL---LYMATQIS 126
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT-VMGTLG 119
            A+ YL     +  + R+      L  E ++ K+ DF LS  +  G+T+         + 
Sbjct: 127 SAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIK 182
Query: 120 YCAPEYMRTGVFNEKSN 136
           + APE +    F+ KS+
Sbjct: 183 WTAPESLAYNKFSIKSD 199

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           IV  L +LH    R I++R+ K   +L +++   ++ D  L++ +  G+T  T    GT 
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK-TKGYAGTP 353
Query: 119 GYCAPEYM 126
           G+ APE +
Sbjct: 354 GFMAPELL 361

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE-PLLLKHRLKIA--M 57
           ++ H  +++L     E PI I V E +  G+L D + G    +   P L+    +IA  M
Sbjct: 66  KLRHEKLVQLYAVVSEEPIYI-VTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGM 124
Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
             V  + Y+H         R+ + + IL  E  V K+ DF L+  I + E          
Sbjct: 125 AYVERMNYVH---------RDLRAANILVGENLVCKVADFGLARLIEDNEWTARQGAKFP 175
Query: 118 LGYCAPEYMRTGVFNEKSN 136
           + + APE    G F  KS+
Sbjct: 176 IKWTAPEAALYGRFTIKSD 194

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE-PLLLKHRLKIA--M 57
           ++ H  +++L     E PI I V E +  G+L D + G    +   P L+    +IA  M
Sbjct: 66  KLRHEKLVQLYAVVSEEPIYI-VTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGM 124
Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
             V  + Y+H         R+ + + IL  E  V K+ DF L+  I + E          
Sbjct: 125 AYVERMNYVH---------RDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 175
Query: 118 LGYCAPEYMRTGVFNEKSN 136
           + + APE    G F  KS+
Sbjct: 176 IKWTAPEAALYGRFTIKSD 194

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D + G    +   L L   + +A  I 
Sbjct: 58  KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKY---LRLPQLVDMAAQIA 113
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L+  I + E          + +
Sbjct: 114 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 170
Query: 121 CAPEYMRTGVFNEKSN 136
            APE    G F  KS+
Sbjct: 171 TAPEAALYGRFTIKSD 186

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D + G    +   L L   + +A  I 
Sbjct: 236 KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKY---LRLPQLVDMAAQIA 291
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L   I + E          + +
Sbjct: 292 SGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLGRLIEDNEYTARQGAKFPIKW 348
Query: 121 CAPEYMRTGVFNEKSN 136
            APE    G F  KS+
Sbjct: 349 TAPEAALYGRFTIKSD 364

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D + G    +   L L   + +A  I 
Sbjct: 69  KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKY---LRLPQLVDMAAQIA 124
Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L+  I + E          + +
Sbjct: 125 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 181
Query: 121 CAPEYMRTGVFNEKSN 136
            APE    G F  KS+
Sbjct: 182 TAPEAALYGRFTIKSD 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	9e-59
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	3e-54
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	9e-53
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-39
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-32
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	8e-32
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	7e-31
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	9e-31
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-30
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-30
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-30
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-29
3q4u_A	301	Activin receptor type-1; structural genomics conso	7e-29
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	8e-27
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-26
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-26
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	3e-25
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	5e-25
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-19
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-17
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-17
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	4e-17
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	4e-17
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	8e-17
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	8e-17
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	9e-17
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	1e-16
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-16
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-16
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-16
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-16
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-16
3pls_A	298	Macrophage-stimulating protein receptor; protein k	3e-16
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	5e-16
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	6e-16
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	7e-16
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	8e-16
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-15
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-15
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	2e-15
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-15
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	3e-15
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	3e-15
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	3e-15
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	4e-15
3ork_A	311	Serine/threonine protein kinase; structural genomi	4e-15
4aoj_A	329	High affinity nerve growth factor receptor; transf	5e-15
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	6e-15
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	8e-15
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-14
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-14
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-14
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-14
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-14
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	3e-14
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-14
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	3e-14
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	4e-14
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	4e-14
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	6e-14
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	9e-14
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-13
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-13
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-13
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-13
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	2e-13
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-13
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	3e-13
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-13
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-13
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	6e-13
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	6e-13
2a19_B	284	Interferon-induced, double-stranded RNA-activated	8e-13
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	9e-13
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-12
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-12
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	2e-12
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-12
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	3e-12
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-12
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	5e-12
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	6e-12
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	7e-12
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	7e-12
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	7e-12
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	8e-12
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	9e-12
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-11
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-11
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-11
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-11
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-11
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-11
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-11
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-11
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	4e-11
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	4e-11
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	5e-11
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	5e-11
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	6e-11
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	6e-11
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	8e-11
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	9e-11
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	9e-11
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-10
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-10
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	3e-10
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	4e-10
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	4e-10
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	4e-10
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	5e-10
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	6e-10
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	8e-10
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	8e-10
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	8e-10
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	9e-10
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-09
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-09
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-09
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-09
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-09
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-09
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-09
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-09
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	5e-09
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-08
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	1e-08
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	1e-08
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-08
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-08
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	3e-08
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	3e-08
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-08
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	4e-08
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	4e-08
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	5e-08
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	6e-08
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-07
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	2e-07
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	6e-07
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	1e-06
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	1e-06
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-06
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-06
2dyl_A	318	Dual specificity mitogen-activated protein kinase	2e-06
3fme_A	290	Dual specificity mitogen-activated protein kinase;	3e-06
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	3e-06
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	7e-06
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	8e-06
3an0_A	340	Dual specificity mitogen-activated protein kinase;	8e-06
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	1e-05
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	1e-05
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	1e-05
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-05
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	2e-05
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-05
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	3e-05
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	3e-05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	3e-05
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	4e-05
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	4e-05
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	4e-05
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	5e-05
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	5e-05
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	6e-05
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	9e-05
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	9e-05
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	1e-04
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-04
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-04
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-04
3uqc_A	286	Probable conserved transmembrane protein; structur	2e-04
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	2e-04
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	3e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	4e-04
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	4e-04
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	7e-04
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	8e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  187 bits (477), Expect = 9e-59
 Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 15/232 (6%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
              H H++ LIG C E    IL+++ ++ G L   + G+  P    +  + RL+I +   
Sbjct: 91  FCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPT-MSMSWEQRLEICIGAA 149

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEG-ETHITDTVMGTLG 119
             L YLH      I+ R+ K+  IL +E  V K+ DF +S    E  +TH++  V GTLG
Sbjct: 150 RGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLG 206

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSD--LVKDVHDLVCPFSEYLKNCFED 177
           Y  PEY   G   EKS+V+SF V LFE+L         L +++ +L     E+      +
Sbjct: 207 YIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLA----EWAVESHNN 262

Query: 178 NRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL 229
            +  +IVD  + + +        L        +C+  S  DRPSM DV  KL
Sbjct: 263 GQLEQIVDPNLADKIRPES----LRKFGDTAVKCLALSSEDRPSMGDVLWKL 310

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  176 bits (448), Expect = 3e-54
 Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H ++L+L G C+     +LV+  +  G++   +   P+    PL    R +IA+     L
Sbjct: 86  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQ-PPLDWPKRQRIALGSARGL 144

Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAP 123
           AYLH      I+ R+ K + IL +EE  A + DF L+  +   +TH+T  V GT+G+ AP
Sbjct: 145 AYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAP 204

Query: 124 EYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEI 183
           EY+ TG  +EK++VF + V L EL+TG    DL +  +D      +++K   ++ +   +
Sbjct: 205 EYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEAL 264

Query: 184 VDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL 229
           VD  +  +    E EQ +    QV   C + SP +RP M +V + L
Sbjct: 265 VDVDLQGNYKDEEVEQLI----QVALLCTQSSPMERPKMSEVVRML 306

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  171 bits (437), Expect = 9e-53
 Identities = 56/239 (23%), Positives = 108/239 (45%), Gaps = 21/239 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           +  H ++++L+G   +     LV+  +  G+L DR+         PL    R KIA    
Sbjct: 86  KCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGT--PPLSWHMRCKIAQGAA 143

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLG 119
           + + +LH       + R+ K++ IL +E   AK+ DF L+ +  +   T +T  ++GT  
Sbjct: 144 NGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTA 200

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
           Y APE +  G    KS+++SF V L E++TG    D  ++   L+    +  +   ++ +
Sbjct: 201 YMAPEAL-RGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLL----DIKEEIEDEEK 255

Query: 180 -FTEIVDHIVVEDVSSIEK--EQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
              + +D         +       + A   V  +C+ +    RP +  V + L+++  S
Sbjct: 256 TIEDYID-------KKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS 307

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  137 bits (347), Expect = 2e-39
 Identities = 52/257 (20%), Positives = 96/257 (37%), Gaps = 33/257 (12%)

Query: 1   QMSHNHILKLIGCCLETPIP----ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIA 56
            M H +IL+ IG             L+    + G+L D +          +       IA
Sbjct: 74  GMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFL------KANVVSWNELCHIA 127

Query: 57  MDIVHALAYLH------FGFPRP-IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH 109
             +   LAYLH          +P I  R+ K+  +L      A + DF L++    G++ 
Sbjct: 128 ETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSA 187

Query: 110 I-TDTVMGTLGYCAPEYMRTGV-----FNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDL 163
             T   +GT  Y APE +   +        + ++++  + L+EL +    +D   D + L
Sbjct: 188 GDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYML 247

Query: 164 VCPFSEYLKNCFEDNRFTEIVDHIVVEDV-----SSIEKEQQLHASAQVTFECIKDSPAD 218
             PF E +    +     ++ + +V +          +K   +    +   EC       
Sbjct: 248 --PFEEEIG---QHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEA 302

Query: 219 RPSMVDVAKKLRQIYRS 235
           R S   V +++ Q+ R 
Sbjct: 303 RLSAGCVGERITQMQRL 319

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  119 bits (299), Expect = 3e-32
 Identities = 47/261 (18%), Positives = 96/261 (36%), Gaps = 35/261 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPI----LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIA 56
            M H +IL  I   ++         L+ +  + G+L+D +          L  K  LK+A
Sbjct: 87  LMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYL------KSTTLDAKSMLKLA 140

Query: 57  MDIVHALAYLHFGFPR-----PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT 111
              V  L +LH           I  R+ K+  IL  +     + D  L++        + 
Sbjct: 141 YSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVD 200

Query: 112 DTVM---GTLGYCAPE------YMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD 162
                  GT  Y  PE                ++++SF + L+E+        +V+   +
Sbjct: 201 IPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVE---E 257

Query: 163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-----SSIEKEQQLHASAQVTFECIKDSPA 217
              P+ + +     D  + ++ + + ++ +     +    ++ L    ++  EC   +PA
Sbjct: 258 YQLPYHDLV---PSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPA 314

Query: 218 DRPSMVDVAKKLRQIYRSLSC 238
            R + + V K L ++  S   
Sbjct: 315 SRLTALRVKKTLAKMSESQDI 335

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  118 bits (296), Expect = 8e-32
 Identities = 43/270 (15%), Positives = 88/270 (32%), Gaps = 40/270 (14%)

Query: 1   QMSHNHILKLIGCCLETPIPI-----LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKI 55
            M H++I + I               LV E    G+L   +                 ++
Sbjct: 63  LMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYL------SLHTSDWVSSCRL 116

Query: 56  AMDIVHALAYLHFGFPR------PIVFRNFKTSCILFNEENVAKLFDFSLS-------IS 102
           A  +   LAYLH   PR       I  R+  +  +L   +    + DF LS       + 
Sbjct: 117 AHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLV 176

Query: 103 IPEGETHITDTVMGTLGYCAPEYMRTGV-------FNEKSNVFSFSVFLFELLTGWDVSD 155
            P  E +   + +GT+ Y APE +   V         ++ ++++  +  +E+        
Sbjct: 177 RPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLF 236

Query: 156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV------SSIEKEQQLHASAQVTF 209
             + V +    F   + N      F ++   +  E        +  E    + +  +   
Sbjct: 237 PGESVPEYQMAFQTEVGN---HPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIE 293

Query: 210 ECIKDSPADRPSMVDVAKKLRQIYRSLSCN 239
           +C       R +     +++ ++      N
Sbjct: 294 DCWDQDAEARLTAQXAEERMAELMMIWERN 323

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  114 bits (288), Expect = 7e-31
 Identities = 56/241 (23%), Positives = 103/241 (42%), Gaps = 35/241 (14%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           +++H +I+KL G CL      LV E  + G+L++ + GA           H +   +   
Sbjct: 57  RVNHPNIVKLYGACLNPVC--LVMEYAEGGSLYNVLHGAEPL--PYYTAAHAMSWCLQCS 112

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLG 119
             +AYLH   P+ ++ R+ K   +L      V K+ DF  +  I   +TH+T+   G+  
Sbjct: 113 QGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI---QTHMTNNK-GSAA 168

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTG---WDVSDLVKDVHDLVCPFSEYLKNCFE 176
           + APE      ++EK +VFS+ + L+E++T    +D         ++  P    +     
Sbjct: 169 WMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFD---------EIGGPAFRIMWAVHN 219

Query: 177 DNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL 236
             R   I +  + + + S+               C    P+ RPSM ++ K +  + R  
Sbjct: 220 GTRPPLIKN--LPKPIESLMT------------RCWSKDPSQRPSMEEIVKIMTHLMRYF 265

Query: 237 S 237
            
Sbjct: 266 P 266

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  113 bits (286), Expect = 9e-31
 Identities = 43/240 (17%), Positives = 91/240 (37%), Gaps = 46/240 (19%)

Query: 3   SHNHILKLIGCCLETPIPIL--VFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           SH ++L ++G C   P P    +   + YG+L++ +    +     +     +K A+D+ 
Sbjct: 65  SHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLH---EGTNFVVDQSQAVKFALDMA 121

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A+LH      I      +  ++ +E+  A++    +  S            M    +
Sbjct: 122 RGMAFLH-TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSP------GRMYAPAW 174

Query: 121 CAPEYMR---TGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
            APE ++          ++++SF+V L+EL+T                PF++        
Sbjct: 175 VAPEALQKKPEDTNRRSADMWSFAVLLWELVTR-------------EVPFADL------- 214

Query: 178 NRFTEIVDHIVVEDV-----SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
               EI   + +E +       I         +++   C+ + PA RP    +   L ++
Sbjct: 215 -SNMEIGMKVALEGLRPTIPPGISPHV-----SKLMKICMNEDPAKRPKFDMIVPILEKM 268

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  113 bits (286), Expect = 2e-30
 Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 29/235 (12%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H +I+  +G   + P   +V E +  G+L+  +L         L  + RL +A D+   +
Sbjct: 93  HPNIVLFMGAVTQPPNLSIVTEYLSRGSLYR-LLHKSGARE-QLDERRRLSMAYDVAKGM 150

Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAP 123
            YLH     PIV RN K+  +L +++   K+ DF LS            +  GT  + AP
Sbjct: 151 NYLH-NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSK-SAAGTPEWMAP 208

Query: 124 EYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEI 183
           E +R    NEKS+V+SF V L+EL T                P+              ++
Sbjct: 209 EVLRDEPSNEKSDVYSFGVILWELATL-------------QQPWGNL--------NPAQV 247

Query: 184 VDHIVVEDVS-SIEKEQQLHAS-AQVTFECIKDSPADRPSMVDVAKKLRQIYRSL 236
           V  +  +     I +   L+   A +   C  + P  RPS   +   LR + +S 
Sbjct: 248 VAAVGFKCKRLEIPRN--LNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA 300

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  114 bits (287), Expect = 2e-30
 Identities = 43/258 (16%), Positives = 100/258 (38%), Gaps = 35/258 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPI----LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIA 56
            + H +IL  I    +         LV +  ++G+L+D +      +   + ++  +K+A
Sbjct: 92  MLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYL------NRYTVTVEGMIKLA 145

Query: 57  MDIVHALAYLHFGFPR-----PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT 111
           +     LA+LH           I  R+ K+  IL  +     + D  L++        I 
Sbjct: 146 LSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTID 205

Query: 112 D---TVMGTLGYCAPEYMRTGV------FNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD 162
                 +GT  Y APE +   +        +++++++  +  +E+     +  + +D   
Sbjct: 206 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQ- 264

Query: 163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-----SSIEKEQQLHASAQVTFECIKDSPA 217
              P+ + +     D    E+   +  + +     +  +  + L   A++  EC   + A
Sbjct: 265 --LPYYDLVP---SDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGA 319

Query: 218 DRPSMVDVAKKLRQIYRS 235
            R + + + K L Q+ + 
Sbjct: 320 ARLTALRIKKTLSQLSQQ 337

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  110 bits (277), Expect = 2e-29
 Identities = 54/240 (22%), Positives = 94/240 (39%), Gaps = 38/240 (15%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + H +I+ L G CL+ P   LV E  + G L   +        + +     +  A+ I 
Sbjct: 62  MLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVL------SGKRIPPDILVNWAVQIA 115

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEE--------NVAKLFDFSLSISIPEGETHITD 112
             + YLH     PI+ R+ K+S IL  ++         + K+ DF L+            
Sbjct: 116 RGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTK---M 172

Query: 113 TVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLK 172
           +  G   + APE +R  +F++ S+V+S+ V L+ELLTG               PF     
Sbjct: 173 SAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTG-------------EVPFRGI-- 217

Query: 173 NCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
                     +   + +  ++           A++  +C    P  RPS  ++  +L  I
Sbjct: 218 ------DGLAVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  109 bits (274), Expect = 7e-29
 Identities = 49/255 (19%), Positives = 99/255 (38%), Gaps = 35/255 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPI----LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIA 56
            + H +IL  I   + +        L+    + G+L+D +          L     L+I 
Sbjct: 58  MLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYL------QLTTLDTVSCLRIV 111

Query: 57  MDIVHALAYLH-----FGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT 111
           + I   LA+LH           I  R+ K+  IL  +     + D  L++   +    + 
Sbjct: 112 LSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLD 171

Query: 112 DTVM---GTLGYCAPE------YMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD 162
                  GT  Y APE       +      ++ ++++F + L+E+      + +V+   D
Sbjct: 172 VGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVE---D 228

Query: 163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-----SSIEKEQQLHASAQVTFECIKDSPA 217
              PF + + N   D  F ++   + V+       +    +  L + A++  EC   +P+
Sbjct: 229 YKPPFYDVVPN---DPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPS 285

Query: 218 DRPSMVDVAKKLRQI 232
            R + + + K L +I
Sbjct: 286 ARLTALRIKKTLTKI 300

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  103 bits (260), Expect = 8e-27
 Identities = 54/251 (21%), Positives = 88/251 (35%), Gaps = 42/251 (16%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + H ++LK IG   +      + E ++ GTL   I    +          R+  A DI 
Sbjct: 63  CLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGII----KSMDSQYPWSQRVSFAKDIA 118

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD-------- 112
             +AYLH      I+ R+  +   L  E     + DF L+  + + +T            
Sbjct: 119 SGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPD 175

Query: 113 -----TVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPF 167
                TV+G   + APE +    ++EK +VFSF + L E++               V   
Sbjct: 176 RKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGR-------------VNAD 222

Query: 168 SEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHAS-AQVTFECIKDSPADRPSMVDVA 226
            +YL           +   + V              S   +T  C    P  RPS V + 
Sbjct: 223 PDYLPR--------TMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLE 274

Query: 227 KKLRQIYRSLS 237
             L  +   L+
Sbjct: 275 HWLETLRMHLA 285

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  103 bits (258), Expect = 1e-26
 Identities = 53/238 (22%), Positives = 108/238 (45%), Gaps = 35/238 (14%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
           H +IL  +G      + I V +  +  +L+   L A +  FE   +K  + IA      +
Sbjct: 79  HVNILLFMGYSTAPQLAI-VTQWCEGSSLYH-HLHASETKFE---MKKLIDIARQTARGM 133

Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMGTLGYCA 122
            YLH    + I+ R+ K++ I  +E+N  K+ DF L+        +H  + + G++ + A
Sbjct: 134 DYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMA 190

Query: 123 PEYMR---TGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
           PE +R   +  ++ +S+V++F + L+EL+TG               P+S         N 
Sbjct: 191 PEVIRMQDSNPYSFQSDVYAFGIVLYELMTG-------------QLPYSNI-------NN 230

Query: 180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTF---ECIKDSPADRPSMVDVAKKLRQIYR 234
             +I++ +    +S    + + +   ++     EC+K    +RPS   +  ++ ++ R
Sbjct: 231 RDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  102 bits (256), Expect = 2e-26
 Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 41/241 (17%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            ++H +I+KL G     P   +V E V  G L+ R+L        P+    +L++ +DI 
Sbjct: 79  NLNHPNIVKLYGLMHNPPR--MVMEFVPCGDLYHRLLDKA----HPIKWSVKLRLMLDIA 132

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEEN-----VAKLFDFSLSISIPEGETHITDTVM 115
             + Y+      PIV R+ ++  I     +      AK+ DF LS    +   H    ++
Sbjct: 133 LGIEYMQ-NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS----QQSVHSVSGLL 187

Query: 116 GTLGYCAPE--YMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKN 173
           G   + APE        + EK++ +SF++ L+ +LTG               PF EY   
Sbjct: 188 GNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTG-------------EGPFDEY--- 231

Query: 174 CFEDNRFTEIVDHIVVEDVS-SIEKEQQLHAS-AQVTFECIKDSPADRPSMVDVAKKLRQ 231
                   + ++ I  E +  +I ++         V   C    P  RP    + K+L +
Sbjct: 232 ---SYGKIKFINMIREEGLRPTIPED--CPPRLRNVIELCWSGDPKKRPHFSYIVKELSE 286

Query: 232 I 232
           +
Sbjct: 287 L 287

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  100 bits (250), Expect = 3e-25
 Identities = 44/253 (17%), Positives = 90/253 (35%), Gaps = 45/253 (17%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q  H +++  +G C+  P   ++    +  TL+  +  A       L +    +IA +IV
Sbjct: 85  QTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAK----IVLDVNKTRQIAQEIV 140

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM----G 116
             + YLH    + I+ ++ K+  + ++   V  + DF L       +    +  +    G
Sbjct: 141 KGMGYLH---AKGILHKDLKSKNVFYDNGKV-VITDFGLFSISGVLQAGRREDKLRIQNG 196

Query: 117 TLGYCAPEYMRTGV---------FNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPF 167
            L + APE +R            F++ S+VF+     +EL                  P 
Sbjct: 197 WLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAR-------------EWP- 242

Query: 168 SEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK 227
                  F+      I+  +      ++ +       + +   C      +RP+   +  
Sbjct: 243 -------FKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMD 295

Query: 228 KLRQI---YRSLS 237
            L ++    R LS
Sbjct: 296 MLEKLPKRNRRLS 308

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 85.0 bits (211), Expect = 2e-19
 Identities = 59/257 (22%), Positives = 94/257 (36%), Gaps = 71/257 (27%)

Query: 1   QMSHNHILKLIG-CCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q SH +I++LIG C  + PI I V E VQ G     +    +     L +K  L++  D 
Sbjct: 168 QYSHPNIVRLIGVCTQKQPIYI-VMELVQGGDFLTFL----RTEGARLRVKTLLQMVGDA 222

Query: 60  VHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
              + YL      H    R +  RN      L  E+NV K+ DF +S    +G       
Sbjct: 223 AAGMEYLESKCCIH----RDLAARN-----CLVTEKNVLKISDFGMSREEADGVY----A 269

Query: 114 VMGTLGYC-----APEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVH 161
             G L        APE +  G ++ +S+V+SF + L+E  +               + V 
Sbjct: 270 ASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVE 329

Query: 162 D---LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPAD 218
               L CP     + C                          +    ++  +C    P  
Sbjct: 330 KGGRLPCP-----ELC-----------------------PDAVF---RLMEQCWAYEPGQ 358

Query: 219 RPSMVDVAKKLRQIYRS 235
           RPS   + ++L+ I + 
Sbjct: 359 RPSFSTIYQELQSIRKR 375

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 60/251 (23%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D  L      +  L L   + +A  I 
Sbjct: 318 KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDF-LKGETGKY--LRLPQLVDMAAQIA 373

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             +AY+      H    R +   N     IL  E  V K+ DF L+  I + E       
Sbjct: 374 SGMAYVERMNYVH----RDLRAAN-----ILVGENLVCKVADFGLARLIEDNEYTARQGA 424

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD---LV 164
              + + APE    G F  KS+V+SF + L EL T       G    +++  V     + 
Sbjct: 425 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP 484

Query: 165 CPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD 224
           CP       C E                        LH    +  +C +  P +RP+   
Sbjct: 485 CP-----PECPES-----------------------LH---DLMCQCWRKEPEERPTFEY 513

Query: 225 VAKKLRQIYRS 235
           +   L   + S
Sbjct: 514 LQAFLEDYFTS 524

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 51/255 (20%), Positives = 97/255 (38%), Gaps = 63/255 (24%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ + +I++LIG C    + + V E    G L  + L   +       +    ++   + 
Sbjct: 66  QLDNPYIVRLIGVCQAEALML-VMEMAGGGPL-HKFLVGKREEIPVSNV---AELLHQVS 120

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             + YL      H    R +  RN     +L    + AK+ DF LS ++   +++ T   
Sbjct: 121 MGMKYLEEKNFVH----RDLAARN-----VLLVNRHYAKISDFGLSKALGADDSYYTARS 171

Query: 115 MGTL--GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVKDVHD 162
            G     + APE +    F+ +S+V+S+ V ++E L+          G +V   ++    
Sbjct: 172 AGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKR 231

Query: 163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM 222
           + CP       C  +                       L+    +  +C      DRP  
Sbjct: 232 MECP-----PECPPE-----------------------LY---ALMSDCWIYKWEDRPDF 260

Query: 223 VDVAKKLRQIYRSLS 237
           + V +++R  Y SL+
Sbjct: 261 LTVEQRMRACYYSLA 275

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 78.6 bits (194), Expect = 4e-17
 Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 60/251 (23%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D  L      +  L L   + +A  I 
Sbjct: 235 KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDF-LKGETGKY--LRLPQLVDMAAQIA 290

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             +AY+      H    R +   N     IL  E  V K+ DF L+  I + E       
Sbjct: 291 SGMAYVERMNYVH----RDLRAAN-----ILVGENLVCKVADFGLARLIEDNEYTARQGA 341

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD---LV 164
              + + APE    G F  KS+V+SF + L EL T       G    +++  V     + 
Sbjct: 342 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP 401

Query: 165 CPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD 224
           CP       C E                        LH    +  +C +  P +RP+   
Sbjct: 402 CP-----PECPES-----------------------LH---DLMCQCWRKEPEERPTFEY 430

Query: 225 VAKKLRQIYRS 235
           +   L   + S
Sbjct: 431 LQAFLEDYFTS 441

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 78.0 bits (193), Expect = 4e-17
 Identities = 42/256 (16%), Positives = 89/256 (34%), Gaps = 70/256 (27%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + + H+ +L+G CL + + + + + + +G L D  +   + +     L   L   + I 
Sbjct: 73  SVDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDY-VREHKDNIGSQYL---LNWCVQIA 127

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             + YL      H    R +  RN     +L       K+ DF L+  +   E       
Sbjct: 128 KGMNYLEDRRLVH----RDLAARN-----VLVKTPQHVKITDFGLAKLLGAEE----KEY 174

Query: 115 MGTLG-----YCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVKD 159
               G     + A E +   ++  +S+V+S+ V ++EL+T            ++S +++ 
Sbjct: 175 HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEK 234

Query: 160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADR 219
              L  P       C  D                       ++    +  +C       R
Sbjct: 235 GERLPQP-----PICTID-----------------------VY---MIMRKCWMIDADSR 263

Query: 220 PSMVDVAKKLRQIYRS 235
           P   ++  +  ++ R 
Sbjct: 264 PKFRELIIEFSKMARD 279

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 76.5 bits (189), Expect = 8e-17
 Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 64/255 (25%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ + +I+++IG C      + V E  + G L   +          +  K+ +++   + 
Sbjct: 74  QLDNPYIVRMIGICEAESWML-VMEMAELGPLNKYLQQNRH-----VKDKNIIELVHQVS 127

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             + YL      H    R +  RN     +L   ++ AK+ DF LS ++   E +     
Sbjct: 128 MGMKYLEESNFVH----RDLAARN-----VLLVTQHYAKISDFGLSKALRADENYYKAQT 178

Query: 115 MGTL--GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVKDVHD 162
            G     + APE +    F+ KS+V+SF V ++E  +          G +V+ +++    
Sbjct: 179 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGER 238

Query: 163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM 222
           + CP       C  +                       ++    +   C      +RP  
Sbjct: 239 MGCP-----AGCPRE-----------------------MY---DLMNLCWTYDVENRPGF 267

Query: 223 VDVAKKLRQIYRSLS 237
             V  +LR  Y  + 
Sbjct: 268 AAVELRLRNYYYDVV 282

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 78.0 bits (192), Expect = 8e-17
 Identities = 57/251 (22%), Positives = 88/251 (35%), Gaps = 61/251 (24%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q  H HI+KLIG   E P+ I + E    G L    L   +   +   L   +  A  + 
Sbjct: 447 QFDHPHIVKLIGVITENPVWI-IMELCTLGEL-RSFLQVRKFSLDLASL---ILYAYQLS 501

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
            ALAYL      H    R I  RN     +L +  +  KL DF LS  + +   +     
Sbjct: 502 TALAYLESKRFVH----RDIAARN-----VLVSSNDCVKLGDFGLSRYMEDSTYYKASKG 552

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVKDVHDLV 164
              + + APE +    F   S+V+ F V ++E+L             DV   +++   L 
Sbjct: 553 KLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP 612

Query: 165 CPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD 224
            P      NC                          L+    +  +C    P+ RP   +
Sbjct: 613 MP-----PNC-----------------------PPTLY---SLMTKCWAYDPSRRPRFTE 641

Query: 225 VAKKLRQIYRS 235
           +  +L  I   
Sbjct: 642 LKAQLSTILEE 652

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 77.9 bits (192), Expect = 9e-17
 Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 44/232 (18%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           ++ H ++++L+G C   P P  ++ E + YG L D  L         +     L +A  I
Sbjct: 272 EIKHPNLVQLLGVCTREP-PFYIITEFMTYGNLLD-YLRECNRQ--EVSAVVLLYMATQI 327

Query: 60  VHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
             A+ YL      H    R +  RN      L  E ++ K+ DF LS  +          
Sbjct: 328 SSAMEYLEKKNFIH----RNLAARN-----CLVGENHLVKVADFGLSRLMTGDTYTAHAG 378

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDV---HDL 163
               + + APE +    F+ KS+V++F V L+E+ T       G D+S + + +   + +
Sbjct: 379 AKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRM 438

Query: 164 VCP------FSEYLKNCFEDNR-----FTEIV---DHIVVEDVSSIEKEQQL 201
             P        E ++ C++ N      F EI    + +  E   S E E++L
Sbjct: 439 ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKEL 490

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 77.1 bits (190), Expect = 1e-16
 Identities = 49/257 (19%), Positives = 93/257 (36%), Gaps = 64/257 (24%)

Query: 1   QMSHNHILKLIGCCLETPIPIL-VFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
             SH ++L L+G CL +    L V   +++G L    +     +     L   +   + +
Sbjct: 146 DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDL-RNFIRNETHNPTVKDL---IGFGLQV 201

Query: 60  VHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
              + +L      H    R +  RN      + +E+   K+ DF L+  + + E      
Sbjct: 202 AKGMKFLASKKFVH----RDLAARN-----CMLDEKFTVKVADFGLARDMYDKEFDSVHN 252

Query: 114 VMGTL---GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVKDV 160
             G      + A E ++T  F  KS+V+SF V L+EL+T           +D++  +   
Sbjct: 253 KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG 312

Query: 161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP 220
             L+ P     + C                          L+   +V  +C       RP
Sbjct: 313 RRLLQP-----EYC-----------------------PDPLY---EVMLKCWHPKAEMRP 341

Query: 221 SMVDVAKKLRQIYRSLS 237
           S  ++  ++  I+ +  
Sbjct: 342 SFSELVSRISAIFSTFI 358

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 50/257 (19%), Positives = 95/257 (36%), Gaps = 64/257 (24%)

Query: 1   QMSHNHILKLIGCCLETPIPIL-VFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
             SH ++L L+G CL +    L V   +++G L    +     +     +K  +   + +
Sbjct: 82  DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDL-RNFIRNETHN---PTVKDLIGFGLQV 137

Query: 60  VHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
              + YL      H    R +  RN      + +E+   K+ DF L+  + + E +    
Sbjct: 138 AKGMKYLASKKFVH----RDLAARN-----CMLDEKFTVKVADFGLARDMYDKEYYSVHN 188

Query: 114 VMGTL---GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVKDV 160
             G      + A E ++T  F  KS+V+SF V L+EL+T           +D++  +   
Sbjct: 189 KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG 248

Query: 161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP 220
             L+ P     + C                          L+   +V  +C       RP
Sbjct: 249 RRLLQP-----EYC-----------------------PDPLY---EVMLKCWHPKAEMRP 277

Query: 221 SMVDVAKKLRQIYRSLS 237
           S  ++  ++  I+ +  
Sbjct: 278 SFSELVSRISAIFSTFI 294

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 58/254 (22%), Positives = 98/254 (38%), Gaps = 43/254 (16%)

Query: 1   QMSHNHILKLIGCCLETPI-PI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMD 58
            + H++I+K  G C       + L+ E + YG+L D +    Q H E +     L+    
Sbjct: 67  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQ 122

Query: 59  IVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD 112
           I   + YL      H    R +  RN     IL   EN  K+ DF L+  +P+ +     
Sbjct: 123 ICKGMEYLGTKRYIH----RDLATRN-----ILVENENRVKIGDFGLTKVLPQDKEFFKV 173

Query: 113 TVMGTL--GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEY 170
              G     + APE +    F+  S+V+SF V L+EL T  + S         +    + 
Sbjct: 174 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQ 233

Query: 171 LKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASA-------QVTFECIKDSPADRPSMV 223
                           IV   +  ++   +L            +  EC  ++   RPS  
Sbjct: 234 -------------GQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFR 280

Query: 224 DVAKKLRQIYRSLS 237
           D+A ++ QI  +++
Sbjct: 281 DLALRVDQIRDNMA 294

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 76.2 bits (188), Expect = 2e-16
 Identities = 49/267 (18%), Positives = 97/267 (36%), Gaps = 76/267 (28%)

Query: 1   QMSHNHILKLIGCCLE------TPIPILVFESVQYGTLWDRILGA-PQPHFEPLLLKHRL 53
           +  H H+ KL+G  L        PIP+++   +++G L   +L +    +   L L+  +
Sbjct: 81  EFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLV 140

Query: 54  KIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE 107
           +  +DI   + YL      H    R +  RN      +  E+    + DF LS  I  G+
Sbjct: 141 RFMVDIACGMEYLSSRNFIH----RDLAARN-----CMLAEDMTVCVADFGLSRKIYSGD 191

Query: 108 THITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------G 150
            +            +      A E +   ++   S+V++F V ++E++T           
Sbjct: 192 YYRQGCASKLPVKWL------ALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIEN 245

Query: 151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFE 210
            ++ + +   + L  P       C                        ++++    + ++
Sbjct: 246 AEIYNYLIGGNRLKQP-----PEC-----------------------MEEVY---DLMYQ 274

Query: 211 CIKDSPADRPSMVDVAKKLRQIYRSLS 237
           C    P  RPS   +  +L  I   LS
Sbjct: 275 CWSADPKQRPSFTCLRMELENILGHLS 301

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 53/266 (19%), Positives = 105/266 (39%), Gaps = 75/266 (28%)

Query: 1   QMSHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGA-PQPHFEPLLLKHRLK 54
             SH ++++L+G C+E      P P+++   ++YG L   +L +  +   + + L+  LK
Sbjct: 92  DFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLK 151

Query: 55  IAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET 108
             +DI   + YL      H    R +  RN      +  ++    + DF LS  I  G+ 
Sbjct: 152 FMVDIALGMEYLSNRNFLH----RDLAARN-----CMLRDDMTVCVADFGLSKKIYSGDY 202

Query: 109 HITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GW 151
           +    +       +      A E +   V+  KS+V++F V ++E+ T            
Sbjct: 203 YRQGRIAKMPVKWI------AIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH 256

Query: 152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFEC 211
           ++ D +   H L  P     ++C                         +L+   ++ + C
Sbjct: 257 EMYDYLLHGHRLKQP-----EDC-----------------------LDELY---EIMYSC 285

Query: 212 IKDSPADRPSMVDVAKKLRQIYRSLS 237
            +  P DRP+   +  +L ++  SL 
Sbjct: 286 WRTDPLDRPTFSVLRLQLEKLLESLP 311

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 76.9 bits (189), Expect = 2e-16
 Identities = 51/255 (20%), Positives = 96/255 (37%), Gaps = 63/255 (24%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ + +I++LIG C    + + V E    G L  + L   +       +    ++   + 
Sbjct: 392 QLDNPYIVRLIGVCQAEALML-VMEMAGGGPL-HKFLVGKREEIPVSNV---AELLHQVS 446

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             + YL      H    R +  RN     +L    + AK+ DF LS ++   +++ T   
Sbjct: 447 MGMKYLEEKNFVH----RNLAARN-----VLLVNRHYAKISDFGLSKALGADDSYYTARS 497

Query: 115 MGTLGY--CAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVKDVHD 162
            G       APE +    F+ +S+V+S+ V ++E L+          G +V   ++    
Sbjct: 498 AGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKR 557

Query: 163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM 222
           + CP       C  +                       L+    +  +C      DRP  
Sbjct: 558 MECP-----PECPPE-----------------------LY---ALMSDCWIYKWEDRPDF 586

Query: 223 VDVAKKLRQIYRSLS 237
           + V +++R  Y SL+
Sbjct: 587 LTVEQRMRACYYSLA 601

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 54/257 (21%), Positives = 95/257 (36%), Gaps = 64/257 (24%)

Query: 1   QMSHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
            ++H ++L LIG  L    +P ++   + +G L   I    +       +K  +   + +
Sbjct: 78  GLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFI----RSPQRNPTVKDLISFGLQV 133

Query: 60  VHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
              + YL      H    R +  RN      + +E    K+ DF L+  I + E +    
Sbjct: 134 ARGMEYLAEQKFVH----RDLAARN-----CMLDESFTVKVADFGLARDILDREYYSVQQ 184

Query: 114 VMGTL---GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVKDV 160
                    + A E ++T  F  KS+V+SF V L+ELLT           +D++  +   
Sbjct: 185 HRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQG 244

Query: 161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP 220
             L  P     + C                          L+   QV  +C +  PA RP
Sbjct: 245 RRLPQP-----EYC-----------------------PDSLY---QVMQQCWEADPAVRP 273

Query: 221 SMVDVAKKLRQIYRSLS 237
           +   +  ++ QI  +L 
Sbjct: 274 TFRVLVGEVEQIVSALL 290

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 74.6 bits (184), Expect = 5e-16
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 22/157 (14%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + H ++++L G  L  P+ + V E    G+L DR L   Q HF    L    + A+ + 
Sbjct: 77  SLDHRNLIRLYGVVLTPPMKM-VTELAPLGSLLDR-LRKHQGHFLLGTL---SRYAVQVA 131

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             + YL      H    R +  RN     +L    ++ K+ DF L  ++P+ + H     
Sbjct: 132 EGMGYLESKRFIH----RDLAARN-----LLLATRDLVKIGDFGLMRALPQNDDHYVMQE 182

Query: 115 MGTLGY--CAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
              + +  CAPE ++T  F+  S+ + F V L+E+ T
Sbjct: 183 HRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFT 219

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 74.2 bits (183), Expect = 6e-16
 Identities = 57/251 (22%), Positives = 88/251 (35%), Gaps = 61/251 (24%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q  H HI+KLIG   E P+ I + E    G L    L   +   +   L   +  A  + 
Sbjct: 72  QFDHPHIVKLIGVITENPVWI-IMELCTLGEL-RSFLQVRKYSLDLASL---ILYAYQLS 126

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
            ALAYL      H    R I  RN     +L +  +  KL DF LS  + +   +     
Sbjct: 127 TALAYLESKRFVH----RDIAARN-----VLVSSNDCVKLGDFGLSRYMEDSTYYKASKG 177

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVKDVHDLV 164
              + + APE +    F   S+V+ F V ++E+L             DV   +++   L 
Sbjct: 178 KLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP 237

Query: 165 CPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD 224
            P      NC                          L+    +  +C    P+ RP   +
Sbjct: 238 MP-----PNCPPT-----------------------LY---SLMTKCWAYDPSRRPRFTE 266

Query: 225 VAKKLRQIYRS 235
           +  +L  I   
Sbjct: 267 LKAQLSTILEE 277

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 74.3 bits (183), Expect = 7e-16
 Identities = 58/254 (22%), Positives = 98/254 (38%), Gaps = 43/254 (16%)

Query: 1   QMSHNHILKLIGCCLETPI-PI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMD 58
            + H++I+K  G C       + L+ E + YG+L D +    Q H E +     L+    
Sbjct: 98  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL----QKHKERIDHIKLLQYTSQ 153

Query: 59  IVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD 112
           I   + YL      H    R +  RN     IL   EN  K+ DF L+  +P+ + +   
Sbjct: 154 ICKGMEYLGTKRYIH----RDLATRN-----ILVENENRVKIGDFGLTKVLPQDKEYYKV 204

Query: 113 TVMGTL--GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEY 170
              G     + APE +    F+  S+V+SF V L+EL T  + S         +    + 
Sbjct: 205 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQ 264

Query: 171 LKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASA-------QVTFECIKDSPADRPSMV 223
                           IV   +  ++   +L            +  EC  ++   RPS  
Sbjct: 265 -------------GQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFR 311

Query: 224 DVAKKLRQIYRSLS 237
           D+A ++ QI   ++
Sbjct: 312 DLALRVDQIRDQMA 325

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 74.3 bits (183), Expect = 8e-16
 Identities = 53/261 (20%), Positives = 95/261 (36%), Gaps = 70/261 (26%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWD-----RILGAPQPHFEPLLLKHRLKI 55
           + + +H+++L+G   +    +++ E +  G L       R   A  P   P  L   +++
Sbjct: 84  EFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQM 143

Query: 56  AMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH 109
           A +I   +AYL      H    R +  RN      +  E+   K+ DF ++  I E +  
Sbjct: 144 AGEIADGMAYLNANKFVH----RDLAARN-----CMVAEDFTVKIGDFGMTRDIYETDY- 193

Query: 110 ITDTVMGTLGYC-----APEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVS 154
                 G  G       +PE ++ GVF   S+V+SF V L+E+ T             V 
Sbjct: 194 ---YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVL 250

Query: 155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKD 214
             V +   L  P      NC                          L    ++   C + 
Sbjct: 251 RFVMEGGLLDKP-----DNC-----------------------PDMLF---ELMRMCWQY 279

Query: 215 SPADRPSMVDVAKKLRQIYRS 235
           +P  RPS +++   +++    
Sbjct: 280 NPKMRPSFLEIISSIKEEMEP 300

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 74.2 bits (182), Expect = 1e-15
 Identities = 32/216 (14%), Positives = 67/216 (31%), Gaps = 23/216 (10%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
               +  +K     L     +LV E   YGTL + I        + +     +  AM ++
Sbjct: 123 PSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRML 182

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVA-----------KLFDFSLSI---SIPEG 106
           + +  +H      I+  + K    +     +             L D   SI     P+G
Sbjct: 183 YMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKG 239

Query: 107 ETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCP 166
                     T G+   E +    +N + + F  +  ++ +L G   + +        C 
Sbjct: 240 TIFTAKC--ETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFG---TYMKVKNEGGECK 294

Query: 167 FSEYLKNCFEDNRFTEIVDHIV-VEDVSSIEKEQQL 201
                +     + + E    ++ + D   +     L
Sbjct: 295 PEGLFRRLPHLDMWNEFFHVMLNIPDCHHLPSLDLL 330

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 73.6 bits (181), Expect = 2e-15
 Identities = 51/251 (20%), Positives = 95/251 (37%), Gaps = 60/251 (23%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + H+ ++KL     + PI I + E +  G+L    L + +       L   +  +  I 
Sbjct: 239 TLQHDKLVKLHAVVTKEPIYI-ITEFMAKGSL-LDFLKSDEG--SKQPLPKLIDFSAQIA 294

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             +A++      H    R +   N     IL +   V K+ DF L+  I + E    +  
Sbjct: 295 EGMAFIEQRNYIH----RDLRAAN-----ILVSASLVCKIADFGLARVIEDNEYTAREGA 345

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD---LV 164
              + + APE +  G F  KS+V+SF + L E++T       G    ++++ +     + 
Sbjct: 346 KFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMP 405

Query: 165 CPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD 224
            P     +NC E+                       L+    +   C K+ P +RP+   
Sbjct: 406 RP-----ENCPEE-----------------------LY---NIMMRCWKNRPEERPTFEY 434

Query: 225 VAKKLRQIYRS 235
           +   L   Y +
Sbjct: 435 IQSVLDDFYTA 445

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 48/254 (18%), Positives = 97/254 (38%), Gaps = 66/254 (25%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + H HI++L+G C  + + + V + +  G+L D  +   +    P LL   L   + I 
Sbjct: 71  SLDHAHIVRLLGLCPGSSLQL-VTQYLPLGSLLDH-VRQHRGALGPQLL---LNWGVQIA 125

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             + YL      H    R +  RN     +L    +  ++ DF ++  +P  +  +  + 
Sbjct: 126 KGMYYLEEHGMVH----RNLAARN-----VLLKSPSQVQVADFGVADLLPPDDKQLLYS- 175

Query: 115 MGT---LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVKDVH 161
                 + + A E +  G +  +S+V+S+ V ++EL+T            +V DL++   
Sbjct: 176 -EAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGE 234

Query: 162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS 221
            L  P     + C  D                       ++    V  +C       RP+
Sbjct: 235 RLAQP-----QICTID-----------------------VY---MVMVKCWMIDENIRPT 263

Query: 222 MVDVAKKLRQIYRS 235
             ++A +  ++ R 
Sbjct: 264 FKELANEFTRMARD 277

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 54/252 (21%), Positives = 100/252 (39%), Gaps = 46/252 (18%)

Query: 1   QMSHNHILKLIGCCLETPI-PI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMD 58
            + H +I+K  G C E     I L+ E +  G+L + +      +   + LK +LK A+ 
Sbjct: 79  NLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYL----PKNKNKINLKQQLKYAVQ 134

Query: 59  IVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD 112
           I   + YL      H    R +  RN     +L   E+  K+ DF L+ +I   + + T 
Sbjct: 135 ICKGMDYLGSRQYVH----RDLAARN-----VLVESEHQVKIGDFGLTKAIETDKEYYTV 185

Query: 113 TVMGTL--GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKDVHDLVCPFSE 169
                    + APE +    F   S+V+SF V L ELLT     S  +     ++ P   
Sbjct: 186 KDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHG 245

Query: 170 YLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASA-------QVTFECIKDSPADRPSM 222
            +                    V+++++ ++L           Q+  +C +  P++R S 
Sbjct: 246 QMTVT---------------RLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSF 290

Query: 223 VDVAKKLRQIYR 234
            ++ +    + +
Sbjct: 291 QNLIEGFEALLK 302

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 55/225 (24%)

Query: 17  TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF 76
            P+  +V E V   +L              L +   +   ++I+ AL+YLH      +V+
Sbjct: 156 DPVGYIVMEYVGGQSLKRSKGQ-------KLPVAEAIAYLLEILPALSYLH---SIGLVY 205

Query: 77  RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT--VMGTLGYCAPEYMRTGVFNEK 134
            + K   I+  EE + KL D           + I     + GT G+ APE +RTG     
Sbjct: 206 NDLKPENIMLTEEQL-KLIDLGAV-------SRINSFGYLYGTPGFQAPEIVRTGP-TVA 256

Query: 135 SNVFSFSVFLFELLTG--WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV 192
           +++++    L  L           V  + +       Y           +    ++    
Sbjct: 257 TDIYTVGRTLAALTLDLPTRNGRYVDGLPEDDPVLKTY-----------DSYGRLL---- 301

Query: 193 SSIEKEQQLHASAQVTFECIKDSPADRP-SMVDVAKKLRQIYRSL 236
                     A          D P  R  +  +++ +L  + R +
Sbjct: 302 --------RRAID-------PD-PRQRFTTAEEMSAQLTGVLREV 330

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 57/251 (22%), Positives = 91/251 (36%), Gaps = 61/251 (24%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + H HI+KLIG   E P  I + E   YG L    L   +   + L L   +  ++ I 
Sbjct: 69  NLDHPHIVKLIGIIEEEPTWI-IMELYPYGELGHY-LERNKNSLKVLTL---VLYSLQIC 123

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
            A+AYL      H    R I  RN     IL       KL DF LS  I + + +     
Sbjct: 124 KAMAYLESINCVH----RDIAVRN-----ILVASPECVKLGDFGLSRYIEDEDYYKASVT 174

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD---LV 164
              + + +PE +    F   S+V+ F+V ++E+L+         +  D++  +     L 
Sbjct: 175 RLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLP 234

Query: 165 CPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD 224
            P       C                          L+    +   C    P+DRP   +
Sbjct: 235 KP-----DLCPPV-----------------------LY---TLMTRCWDYDPSDRPRFTE 263

Query: 225 VAKKLRQIYRS 235
           +   L  +Y+ 
Sbjct: 264 LVCSLSDVYQM 274

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 42/256 (16%), Positives = 89/256 (34%), Gaps = 70/256 (27%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + + H+ +L+G CL + + + + + + +G L D  +   + +     L   L   + I 
Sbjct: 73  SVDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDY-VREHKDNIGSQYL---LNWCVQIA 127

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             + YL      H    R +  RN     +L       K+ DF L+  +   E       
Sbjct: 128 KGMNYLEDRRLVH----RDLAARN-----VLVKTPQHVKITDFGLAKLLGAEE----KEY 174

Query: 115 MGTLG-----YCAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSDLVKD 159
               G     + A E +   ++  +S+V+S+ V ++EL+T            ++S +++ 
Sbjct: 175 HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEK 234

Query: 160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADR 219
              L  P       C  D                       ++    +  +C       R
Sbjct: 235 GERLPQP-----PICTID-----------------------VY---MIMVKCWMIDADSR 263

Query: 220 PSMVDVAKKLRQIYRS 235
           P   ++  +  ++ R 
Sbjct: 264 PKFRELIIEFSKMARD 279

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 49/223 (21%), Positives = 80/223 (35%), Gaps = 48/223 (21%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWD--RILGAPQPHFEPLLLKHRLKIAMD 58
           + +H +I++ IG  L++    ++ E +  G L    R           L +   L +A D
Sbjct: 130 KFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARD 189

Query: 59  IVHALAYL------HFGFPRPIVFRNFKTSCIL--FNEENVAKLFDFSLSISIPEGETHI 110
           I     YL      H    R I  RN    C+L       VAK+ DF ++  I       
Sbjct: 190 IACGCQYLEENHFIH----RDIAARN----CLLTCPGPGRVAKIGDFGMARDIYRAGY-- 239

Query: 111 TDTVMGTLGY-----CAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSD 155
                G           PE    G+F  K++ +SF V L+E+ +            +V +
Sbjct: 240 --YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLE 297

Query: 156 LVKDVHDL----VCPFSEY--LKNCFEDNR-----FTEIVDHI 187
            V     +     CP   Y  +  C++        F  I++ I
Sbjct: 298 FVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERI 340

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 71.9 bits (177), Expect = 4e-15
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 8/150 (5%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+SH +I+ +I    E     LV E ++  TL + I    + H  PL +   +     I+
Sbjct: 67  QLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYI----ESHG-PLSVDTAINFTNQIL 121

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             + + H      IV R+ K   IL +     K+FDF ++ ++ E     T+ V+GT+ Y
Sbjct: 122 DGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQY 178

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            +PE  +    +E ++++S  + L+E+L G
Sbjct: 179 FSPEQAKGEATDECTDIYSIGIVLYEMLVG 208

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 71.9 bits (177), Expect = 4e-15
 Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 10/137 (7%)

Query: 16  ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV 75
             P+P +V E V   TL D +         P+  K  +++  D   AL + H      I+
Sbjct: 87  AGPLPYIVMEYVDGVTLRDIVH-----TEGPMTPKRAIEVIADACQALNFSH---QNGII 138

Query: 76  FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT--VMGTLGYCAPEYMRTGVFNE 133
            R+ K + I+ +  N  K+ DF ++ +I +    +T T  V+GT  Y +PE  R    + 
Sbjct: 139 HRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDA 198

Query: 134 KSNVFSFSVFLFELLTG 150
           +S+V+S    L+E+LTG
Sbjct: 199 RSDVYSLGCVLYEVLTG 215

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 71.9 bits (177), Expect = 5e-15
 Identities = 53/266 (19%), Positives = 93/266 (34%), Gaps = 75/266 (28%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTL----------WDRILGAPQPHFEPLLLK 50
            + H HI++  G C E    ++VFE +++G L             + G       PL L 
Sbjct: 99  MLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLG 158

Query: 51  HRLKIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP 104
             L +A  +   + YL      H    R +  RN      L  +  V K+ DF +S  I 
Sbjct: 159 QLLAVASQVAAGMVYLAGLHFVH----RDLATRN-----CLVGQGLVVKIGDFGMSRDIY 209

Query: 105 EGETHITDTVMGTLG-----YCAPEYMRTGVFNEKSNVFSFSVFLFELLT---------- 149
             +       +G        +  PE +    F  +S+V+SF V L+E+ T          
Sbjct: 210 STDY----YRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS 265

Query: 150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTF 209
             +  D +    +L  P     + C                         +++    +  
Sbjct: 266 NTEAIDCITQGRELERP-----RAC-----------------------PPEVY---AIMR 294

Query: 210 ECIKDSPADRPSMVDVAKKLRQIYRS 235
            C +  P  R S+ DV  +L+ + ++
Sbjct: 295 GCWQREPQQRHSIKDVHARLQALAQA 320

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 71.1 bits (175), Expect = 6e-15
 Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 42/226 (18%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI I + E ++ G+L D  L  P      L +   L +A  I 
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYI-ITEYMENGSLVD-FLKTPSGI--KLTINKLLDMAAQIA 119

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             +A++      H    R +   N     IL ++    K+ DF L+  I + E    +  
Sbjct: 120 EGMAFIEERNYIH----RDLRAAN-----ILVSDTLSCKIADFGLARLIEDNEYTAREGA 170

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD----- 162
              + + APE +  G F  KS+V+SF + L E++T       G    ++++++       
Sbjct: 171 KFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMV 230

Query: 163 --LVCPFSEY--LKNCFEDNR-----FTEIVDHIVVEDVSSIEKEQ 199
               CP   Y  ++ C+++       F  +   +  ED  +  + Q
Sbjct: 231 RPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVL--EDFFTATEGQ 274

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 71.6 bits (176), Expect = 8e-15
 Identities = 49/223 (21%), Positives = 80/223 (35%), Gaps = 48/223 (21%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWD--RILGAPQPHFEPLLLKHRLKIAMD 58
           + +H +I++ IG  L++    ++ E +  G L    R           L +   L +A D
Sbjct: 89  KFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARD 148

Query: 59  IVHALAYL------HFGFPRPIVFRNFKTSCIL--FNEENVAKLFDFSLSISIPEGETHI 110
           I     YL      H    R I  RN    C+L       VAK+ DF ++  I       
Sbjct: 149 IACGCQYLEENHFIH----RDIAARN----CLLTCPGPGRVAKIGDFGMARDIYRASY-- 198

Query: 111 TDTVMGTLGY-----CAPEYMRTGVFNEKSNVFSFSVFLFELLT----------GWDVSD 155
                G           PE    G+F  K++ +SF V L+E+ +            +V +
Sbjct: 199 --YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLE 256

Query: 156 LVKDVHDL----VCPFSEY--LKNCFEDNR-----FTEIVDHI 187
            V     +     CP   Y  +  C++        F  I++ I
Sbjct: 257 FVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERI 299

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 70.3 bits (173), Expect = 1e-14
 Identities = 53/252 (21%), Positives = 102/252 (40%), Gaps = 62/252 (24%)

Query: 1   QMSHNHILKLIGCCL-ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           ++SH  +++L G CL + PI + V E +++G L    L   +  F    L   L + +D+
Sbjct: 59  KLSHPKLVQLYGVCLEQAPICL-VTEFMEHGCL-SDYLRTQRGLFAAETL---LGMCLDV 113

Query: 60  VHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
              +AYL      H    R +  RN      L  E  V K+ DF ++  + + +   +  
Sbjct: 114 CEGMAYLEEACVIH----RDLAARN-----CLVGENQVIKVSDFGMTRFVLDDQYTSSTG 164

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD---L 163
               + + +PE      ++ KS+V+SF V ++E+ +           S++V+D+     L
Sbjct: 165 TKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRL 224

Query: 164 VCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV 223
             P     +                            ++   Q+   C ++ P DRP+  
Sbjct: 225 YKP-----RLASTH-----------------------VY---QIMNHCWRERPEDRPAFS 253

Query: 224 DVAKKLRQIYRS 235
            + ++L +I  S
Sbjct: 254 RLLRQLAEIAES 265

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 56/253 (22%), Positives = 91/253 (35%), Gaps = 46/253 (18%)

Query: 1   QMSHNHILKLIGCCLETPI-PI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMD 58
            +  + I+K  G         + LV E +  G L D  L   +   +   L   L  +  
Sbjct: 80  ALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDF-LQRHRARLDASRL---LLYSSQ 135

Query: 59  IVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD 112
           I   + YL      H    R +  RN     IL   E   K+ DF L+  +P  + +   
Sbjct: 136 ICKGMEYLGSRRCVH----RDLAARN-----ILVESEAHVKIADFGLAKLLPLDKDYYVV 186

Query: 113 TVMGTL--GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEY 170
              G     + APE +   +F+ +S+V+SF V L+EL T  D S                
Sbjct: 187 REPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKS---------------C 231

Query: 171 LKNCFEDNRFTEIVDHIVVEDV-SSIEKEQQLHASA-------QVTFECIKDSPADRPSM 222
             +           D   +  +   +E+ Q+L A         ++   C   SP DRPS 
Sbjct: 232 SPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSF 291

Query: 223 VDVAKKLRQIYRS 235
             +  +L  ++  
Sbjct: 292 SALGPQLDMLWSG 304

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 51/265 (19%), Positives = 91/265 (34%), Gaps = 80/265 (30%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTL-----------WDRILGAPQPHFEPLLLKH 51
            H +I+ L+G C +     ++ E    G L            +      +   E +  K 
Sbjct: 145 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 204

Query: 52  RLKIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPE 105
            +     +   + YL      H    R +  RN     +L  E NV K+ DF L+  I  
Sbjct: 205 LVSCTYQLARGMEYLASQKCIH----RDLAARN-----VLVTENNVMKIADFGLARDINN 255

Query: 106 GETHITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT--------- 149
            + +   T        M      APE +   V+  +S+V+SF V ++E+ T         
Sbjct: 256 IDYYKKTTNGRLPVKWM------APEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI 309

Query: 150 -GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVT 208
              ++  L+K+ H +  P      NC                         +L+    + 
Sbjct: 310 PVEELFKLLKEGHRMDKP-----ANC-----------------------TNELY---MMM 338

Query: 209 FECIKDSPADRPSMVDVAKKLRQIY 233
            +C    P+ RP+   + + L +I 
Sbjct: 339 RDCWHAVPSQRPTFKQLVEDLDRIL 363

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 58/236 (24%), Positives = 99/236 (41%), Gaps = 44/236 (18%)

Query: 1   QMSHNHILKLIGCCL-ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           ++ H ++++L+G C  E P  I + E + YG L D +    +     ++L   L +A  I
Sbjct: 65  EIKHPNLVQLLGVCTREPPFYI-ITEFMTYGNLLDYLRECNRQEVSAVVL---LYMATQI 120

Query: 60  VHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
             A+ YL      H    R +  RN      L  E ++ K+ DF LS  +          
Sbjct: 121 SSAMEYLEKKNFIH----RDLAARN-----CLVGENHLVKVADFGLSRLMTGDTYTAHAG 171

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD---- 162
               + + APE +    F+ KS+V++F V L+E+ T       G D+S + + +      
Sbjct: 172 AKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRM 231

Query: 163 ---LVCPFSEY--LKNCFEDNR-----FTEIV---DHIVVEDVSSIEKEQQLHASA 205
                CP   Y  ++ C++ N      F EI    + +  E   S E E++L    
Sbjct: 232 ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKELGKRG 287

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 51/265 (19%), Positives = 91/265 (34%), Gaps = 80/265 (30%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTL-----------WDRILGAPQPHFEPLLLKH 51
            H +I+ L+G C +     ++ E    G L            +      +   E +  K 
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158

Query: 52  RLKIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPE 105
            +     +   + YL      H    R +  RN     +L  E NV K+ DF L+  I  
Sbjct: 159 LVSCTYQLARGMEYLASQKCIH----RDLAARN-----VLVTENNVMKIADFGLARDINN 209

Query: 106 GETHITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT--------- 149
            + +   T        M      APE +   V+  +S+V+SF V ++E+ T         
Sbjct: 210 IDYYKKTTNGRLPVKWM------APEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI 263

Query: 150 -GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVT 208
              ++  L+K+ H +  P      NC                         +L+    + 
Sbjct: 264 PVEELFKLLKEGHRMDKP-----ANC-----------------------TNELY---MMM 292

Query: 209 FECIKDSPADRPSMVDVAKKLRQIY 233
            +C    P+ RP+   + + L +I 
Sbjct: 293 RDCWHAVPSQRPTFKQLVEDLDRIL 317

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 32/231 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPIL--VFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMD 58
           ++ H +I++     ++     L  V E  + G L   I    +   + L  +  L++   
Sbjct: 61  ELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKER-QYLDEEFVLRVMTQ 119

Query: 59  IVHALAYLH--FGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG 116
           +  AL   H        ++ R+ K + +  + +   KL DF L+  +   +T    T +G
Sbjct: 120 LTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARIL-NHDTSFAKTFVG 178

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFE 176
           T  Y +PE M    +NEKS+++S    L+EL                       L   F 
Sbjct: 179 TPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCA---------------------LMPPFT 217

Query: 177 DNRFTEIVDHIVVEDVSSIEKE--QQLHASAQVTFECIKDSPADRPSMVDV 225
                E+   I       I      +L+   ++    +      RPS+ ++
Sbjct: 218 AFSQKELAGKIREGKFRRIPYRYSDELN---EIITRMLNLKDYHRPSVEEI 265

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 49/228 (21%), Positives = 87/228 (38%), Gaps = 35/228 (15%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMDI 59
            M H +I++      E     +V +  + G L+ RI       F E  +L       + I
Sbjct: 79  NMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILD----WFVQI 134

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
             AL ++H    R I+ R+ K+  I   ++   +L DF ++  +      +    +GT  
Sbjct: 135 CLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVL-NSTVELARACIGTPY 190

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
           Y +PE      +N KS++++    L+EL T                     LK+ FE   
Sbjct: 191 YLSPEICENKPYNNKSDIWALGCVLYELCT---------------------LKHAFEAGS 229

Query: 180 FTEIVDHIVVEDVSSIEKE--QQLHASAQVTFECIKDSPADRPSMVDV 225
              +V  I+      +       L     +  +  K +P DRPS+  +
Sbjct: 230 MKNLVLKIISGSFPPVSLHYSYDLR---SLVSQLFKRNPRDRPSVNSI 274

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 57/263 (21%), Positives = 99/263 (37%), Gaps = 64/263 (24%)

Query: 1   QMSHNHILKLIGCCLET-PIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLK---- 54
            + H HI+K  GCC +     + LV E V  G+L D             L +H +     
Sbjct: 89  TLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRD------------YLPRHSIGLAQL 136

Query: 55  --IAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEG 106
              A  I   +AYL      H    R +  RN     +L + + + K+ DF L+ ++PEG
Sbjct: 137 LLFAQQICEGMAYLHAQHYIH----RDLAARN-----VLLDNDRLVKIGDFGLAKAVPEG 187

Query: 107 ETHITDTVMGTL--GYCAPEYMRTGVFNEKSNVFSFSVFLFELLT--GWDVSDLVKDVHD 162
             +      G     + APE ++   F   S+V+SF V L+ELLT      S   K +  
Sbjct: 188 HEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLEL 247

Query: 163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-SSIEKEQQLHASA-------QVTFECIKD 214
           +     +                 + V  +   +E+ ++L            +   C + 
Sbjct: 248 IGIAQGQ-----------------MTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWET 290

Query: 215 SPADRPSMVDVAKKLRQIYRSLS 237
             + RP+  ++   L+ ++    
Sbjct: 291 EASFRPTFENLIPILKTVHEKYQ 313

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 48/254 (18%), Positives = 94/254 (37%), Gaps = 62/254 (24%)

Query: 1   QMSHNHILKLIGCCL-ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
            +SH  +++L G C  + PI I + E +  G L    L   +  F+   L   L++  D+
Sbjct: 75  NLSHEKLVQLYGVCTKQRPIFI-ITEYMANGCL-LNYLREMRHRFQTQQL---LEMCKDV 129

Query: 60  VHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
             A+ YL      H    R +  RN      L N++ V K+ DF LS  + + E   +  
Sbjct: 130 CEAMEYLESKQFLH----RDLAARN-----CLVNDQGVVKVSDFGLSRYVLDDEYTSSVG 180

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD---L 163
               + +  PE +    F+ KS++++F V ++E+ +        +  S+  + +     L
Sbjct: 181 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRL 240

Query: 164 VCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV 223
             P         E                        ++    + + C  +   +RP+  
Sbjct: 241 YRP-----HLASEK-----------------------VY---TIMYSCWHEKADERPTFK 269

Query: 224 DVAKKLRQIYRSLS 237
            +   +  +    S
Sbjct: 270 ILLSNILDVMDEES 283

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 68.8 bits (169), Expect = 4e-14
 Identities = 44/215 (20%), Positives = 89/215 (41%), Gaps = 42/215 (19%)

Query: 1   QMSHNHILKLIGCCL-ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           ++SH  ++K  G C  E PI I V E +  G L    L +     EP  L   L++  D+
Sbjct: 59  KLSHPKLVKFYGVCSKEYPIYI-VTEYISNGCL-LNYLRSHGKGLEPSQL---LEMCYDV 113

Query: 60  VHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
              +A+L      H    R +  RN      L + +   K+ DF ++  + + +   +  
Sbjct: 114 CEGMAFLESHQFIH----RDLAARN-----CLVDRDLCVKVSDFGMTRYVLDDQYVSSVG 164

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD---- 162
               + + APE      ++ KS+V++F + ++E+ +        +  S++V  V      
Sbjct: 165 TKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRL 224

Query: 163 ---LVCPFSEY--LKNCFEDNR-----FTEIVDHI 187
               +   + Y  + +C+ +       F +++  I
Sbjct: 225 YRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSI 259

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 68.8 bits (169), Expect = 6e-14
 Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 16  ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV 75
                 +    +    L   +         PL     + I   I  AL   H        
Sbjct: 105 IDGQLYVDMRLINGVDLAAMLR-----RQGPLAPPRAVAIVRQIGSALDAAH---AAGAT 156

Query: 76  FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT--VMGTLGYCAPEYMRTGVFNE 133
            R+ K   IL + ++ A L DF ++ +    +  +T     +GTL Y APE         
Sbjct: 157 HRDVKPENILVSADDFAYLVDFGIASAT--TDEKLTQLGNTVGTLYYMAPERFSESHATY 214

Query: 134 KSNVFSFSVFLFELLTG 150
           ++++++ +  L+E LTG
Sbjct: 215 RADIYALTCVLYECLTG 231

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 69.0 bits (169), Expect = 9e-14
 Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 18/155 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
            + H +I+KL     E      LV E  + G L+D I+   +  F E         I   
Sbjct: 92  LLDHPNIMKLYDFF-EDKRNYYLVMECYKGGELFDEIIH--RMKFNE----VDAAVIIKQ 144

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITDTVM 115
           ++  + YLH      IV R+ K   +L     ++ + K+ DF LS      +       +
Sbjct: 145 VLSGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKM--KERL 199

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  Y APE +R   ++EK +V+S  V LF LL G
Sbjct: 200 GTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAG 233

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 47/269 (17%), Positives = 97/269 (36%), Gaps = 82/269 (30%)

Query: 3   SHNHILKLIGCCLETPIPILV-FESVQYGTL-----------WDRILGAPQPHFEPLLLK 50
            H +++ L+G C +   P++V  E  ++G L               +     + + L L+
Sbjct: 89  HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLE 148

Query: 51  HRLKIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP 104
           H +  +  +   + +L      H    R +  RN     IL +E+NV K+ DF L+  I 
Sbjct: 149 HLICYSFQVAKGMEFLASRKCIH----RDLAARN-----ILLSEKNVVKICDFGLARDIY 199

Query: 105 EGETHITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------- 149
           +   ++           M      APE +   V+  +S+V+SF V L+E+ +        
Sbjct: 200 KDPDYVRKGDARLPLKWM------APETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 253

Query: 150 ---GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQ 206
                +    +K+   +  P                                 +++   Q
Sbjct: 254 VKIDEEFCRRLKEGTRMRAP-----DYT-----------------------TPEMY---Q 282

Query: 207 VTFECIKDSPADRPSMVDVAKKLRQIYRS 235
              +C    P+ RP+  ++ + L  + ++
Sbjct: 283 TMLDCWHGEPSQRPTFSELVEHLGNLLQA 311

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
           Q+ H +I+KL     E      LV E    G L+D I+   +  F E        +I   
Sbjct: 82  QLDHPNIMKLYEFF-EDKGYFYLVGEVYTGGELFDEIIS--RKRFSE----VDAARIIRQ 134

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITDTVM 115
           ++  + Y+H      IV R+ K   +L    +++   ++ DF LS      +       +
Sbjct: 135 VLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKM--KDKI 189

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  Y APE +  G ++EK +V+S  V L+ LL+G
Sbjct: 190 GTAYYIAPEVLH-GTYDEKCDVWSTGVILYILLSG 223

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 54/269 (20%), Positives = 93/269 (34%), Gaps = 80/269 (29%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTL-----------WDRILGAPQPHFEPLLLKH 51
            H +I+ L+G C +     ++ E    G L            +          E L  K 
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 192

Query: 52  RLKIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPE 105
            +  A  +   + YL      H    R +  RN     +L  E+NV K+ DF L+  I  
Sbjct: 193 LVSCAYQVARGMEYLASKKCIH----RDLAARN-----VLVTEDNVMKIADFGLARDIHH 243

Query: 106 GETHITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT--------- 149
            + +   T        M      APE +   ++  +S+V+SF V L+E+ T         
Sbjct: 244 IDYYKKTTNGRLPVKWM------APEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV 297

Query: 150 -GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVT 208
              ++  L+K+ H +  P      NC                         +L+    + 
Sbjct: 298 PVEELFKLLKEGHRMDKP-----SNC-----------------------TNELY---MMM 326

Query: 209 FECIKDSPADRPSMVDVAKKLRQIYRSLS 237
            +C    P+ RP+   + + L +I    S
Sbjct: 327 RDCWHAVPSQRPTFKQLVEDLDRIVALTS 355

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 68/254 (26%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q+ H+++++L+G  +E    + +V E +  G+L D  L +       L     LK ++D+
Sbjct: 242 QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVD-YLRSRGRS--VLGGDCLLKFSLDV 298

Query: 60  VHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
             A+ YL      H    R +  RN     +L +E+NVAK+ DF L+          +  
Sbjct: 299 CEAMEYLEGNNFVH----RDLAARN-----VLVSEDNVAKVSDFGLTKEA------SSTQ 343

Query: 114 VMGTLGY--CAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD-- 162
             G L     APE +R   F+ KS+V+SF + L+E+ +          + D+V  V    
Sbjct: 344 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGY 403

Query: 163 -LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS 221
            +  P       C                          ++    V   C     A RP+
Sbjct: 404 KMDAP-----DGCPPA-----------------------VY---DVMKNCWHLDAATRPT 432

Query: 222 MVDVAKKLRQIYRS 235
            + + ++L  I   
Sbjct: 433 FLQLREQLEHIRTH 446

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 58/254 (22%), Positives = 100/254 (39%), Gaps = 68/254 (26%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q+ H+++++L+G  +E    + +V E +  G+L D  L +       L     LK ++D+
Sbjct: 70  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVD-YLRSRGRS--VLGGDCLLKFSLDV 126

Query: 60  VHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
             A+ YL      H    R +  RN     +L +E+NVAK+ DF L+          +  
Sbjct: 127 CEAMEYLEGNNFVH----RDLAARN-----VLVSEDNVAKVSDFGLTKEA------SSTQ 171

Query: 114 VMGTLGY--CAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDVHD-- 162
             G L     APE +R   F+ KS+V+SF + L+E+ +          + D+V  V    
Sbjct: 172 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGY 231

Query: 163 -LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS 221
            +  P       C                          ++   +V   C     A RPS
Sbjct: 232 KMDAP-----DGCPPA-----------------------VY---EVMKNCWHLDAAMRPS 260

Query: 222 MVDVAKKLRQIYRS 235
            + + ++L  I   
Sbjct: 261 FLQLREQLEHIKTH 274

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 19/165 (11%)

Query: 1   QMSHNHILKLIGCCLETPIP----ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIA 56
             +H +IL+L+  CL          L+    + GTLW+ I          L     L + 
Sbjct: 82  LFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKG-NFLTEDQILWLL 140

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDF-SLSISIPEGETHIT---- 111
           + I   L  +H    +    R+ K + IL  +E    L D  S++ +    E        
Sbjct: 141 LGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTL 197

Query: 112 ---DTVMGTLGYCAPEYMRT---GVFNEKSNVFSFSVFLFELLTG 150
                   T+ Y APE        V +E+++V+S    L+ ++ G
Sbjct: 198 QDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFG 242

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 55/258 (21%), Positives = 88/258 (34%), Gaps = 72/258 (27%)

Query: 1   QMSHNHILKLIGCCLETPIPIL-VFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q  H +I++L G         + V E ++ G+L D  L      F  + L   + +   +
Sbjct: 106 QFDHPNIIRLEGVVTRGR-LAMIVTEYMENGSL-DTFLRTHDGQFTIMQL---VGMLRGV 160

Query: 60  VHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
              + YL      H    R +  RN     +L +   V K+ DF LS  + +      D 
Sbjct: 161 GAGMRYLSDLGYVH----RDLAARN-----VLVDSNLVCKVSDFGLSRVLEDDP----DA 207

Query: 114 VMGTLG------YCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWDVSDLVKDV 160
              T G      + APE +    F+  S+V+SF V ++E+L             D++  V
Sbjct: 208 AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSV 267

Query: 161 HD---LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPA 217
            +   L  P       C                          LH   Q+  +C     A
Sbjct: 268 EEGYRLPAP-----MGCPHA-----------------------LH---QLMLDCWHKDRA 296

Query: 218 DRPSMVDVAKKLRQIYRS 235
            RP    +   L  + RS
Sbjct: 297 QRPRFSQIVSVLDALIRS 314

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 57/277 (20%), Positives = 94/277 (33%), Gaps = 84/277 (30%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTL-------------------WDRILGAPQ 41
           +  + +I+KL+G C       L+FE + YG L                            
Sbjct: 106 EFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSS 165

Query: 42  PHFEPLLLKHRLKIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLF 95
           P   PL    +L IA  +   +AYL      H    R +  RN      L  E  V K+ 
Sbjct: 166 PGPPPLSCAEQLCIARQVAAGMAYLSERKFVH----RDLATRN-----CLVGENMVVKIA 216

Query: 96  DFSLSISIPEGETHITDTVMGTLGYC-----APEYMRTGVFNEKSNVFSFSVFLFELLT- 149
           DF LS +I   + +                  PE +    +  +S+V+++ V L+E+ + 
Sbjct: 217 DFGLSRNIYSADYY----KADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSY 272

Query: 150 ---------GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQ 200
                      +V   V+D + L CP     +NC                         +
Sbjct: 273 GLQPYYGMAHEEVIYYVRDGNILACP-----ENC-----------------------PLE 304

Query: 201 LHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLS 237
           L+    +   C    PADRPS   + + L+++     
Sbjct: 305 LY---NLMRLCWSKLPADRPSFCSIHRILQRMCERAE 338

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 66.5 bits (163), Expect = 4e-13
 Identities = 53/267 (19%), Positives = 94/267 (35%), Gaps = 76/267 (28%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTL-----------WDRILGAPQPHFEPLLL 49
            + H HI+K  G C +    I+VFE +++G L              + G P+     L L
Sbjct: 73  NLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGL 132

Query: 50  KHRLKIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI 103
              L IA  I   + YL      H    R +  RN      L     + K+ DF +S  +
Sbjct: 133 SQMLHIASQIASGMVYLASQHFVH----RDLATRN-----CLVGANLLVKIGDFGMSRDV 183

Query: 104 PEGETHITDTVMGTLG-----YCAPEYMRTGVFNEKSNVFSFSVFLFELLT--------- 149
              + +     +G        +  PE +    F  +S+V+SF V L+E+ T         
Sbjct: 184 YSTDYY----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQL 239

Query: 150 -GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVT 208
              +V + +     L  P     + C                        ++++    V 
Sbjct: 240 SNTEVIECITQGRVLERP-----RVC-----------------------PKEVY---DVM 268

Query: 209 FECIKDSPADRPSMVDVAKKLRQIYRS 235
             C +  P  R ++ ++ K L  + ++
Sbjct: 269 LGCWQREPQQRLNIKEIYKILHALGKA 295

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 66.6 bits (162), Expect = 6e-13
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 18/160 (11%)

Query: 1   QMSHNHILKLIGCCLETP-------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRL 53
           +++H +++       +         +P+L  E  + G L   +    + +   L      
Sbjct: 68  KLNHPNVVSAR-EVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLN-QFE-NCCGLKEGPIR 124

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHI 110
            +  DI  AL YLH      I+ R+ K   I+     +  + K+ D   +  + +GE  +
Sbjct: 125 TLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGE--L 179

Query: 111 TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
               +GTL Y APE +    +    + +SF    FE +TG
Sbjct: 180 CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITG 219

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 66.6 bits (163), Expect = 6e-13
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
           ++ H +I+KL     E      +V E    G L+D I+   +  F E        +I   
Sbjct: 77  KLDHPNIMKLFEIL-EDSSSFYIVGELYTGGELFDEIIK--RKRFSE----HDAARIIKQ 129

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITDTVM 115
           +   + Y+H      IV R+ K   IL     ++   K+ DF LS    +    + D + 
Sbjct: 130 VFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK-MKDRI- 184

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  Y APE +R G ++EK +V+S  V L+ LL+G
Sbjct: 185 GTAYYIAPEVLR-GTYDEKCDVWSAGVILYILLSG 218

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 65.4 bits (160), Expect = 8e-13
 Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 32/196 (16%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQY----------------GTLWDRILGAPQPHF 44
           ++ H +I+   GC                                GTL   I        
Sbjct: 60  KLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKL 119

Query: 45  -EPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI 103
            + L L+    +   I   + Y+H    + ++ R+ K S I   +    K+ DF L  S+
Sbjct: 120 DKVLALE----LFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSL 172

Query: 104 PEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW----DVSDLVKD 159
                       GTL Y +PE + +  + ++ ++++  + L ELL       + S    D
Sbjct: 173 KNDGKR--TRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTD 230

Query: 160 VHDLVCP--FSEYLKN 173
           + D +    F +  K 
Sbjct: 231 LRDGIISDIFDKKEKT 246

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 65.9 bits (161), Expect = 9e-13
 Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 18/156 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
            + H +I+KL     E      LV E  + G L+++I+   +  F E         I   
Sbjct: 102 SLDHPNIIKLFDVF-EDKKYFYLVTEFYEGGELFEQIIN--RHKFDE----CDAANIMKQ 154

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITDTVM 115
           I+  + YLH      IV R+ K   IL    N     K+ DF LS    +         +
Sbjct: 155 ILSGICYLHK---HNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKL--RDRL 209

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW 151
           GT  Y APE ++   +NEK +V+S  V ++ LL G+
Sbjct: 210 GTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGY 244

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 24/155 (15%), Positives = 62/155 (40%), Gaps = 12/155 (7%)

Query: 2   MSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRIL---GAPQPHFEPLLLKHRLKIAM 57
           + + + L   G  +     + +++E ++  ++           + +   + ++    I  
Sbjct: 100 IKNEYCLTCEGI-ITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIK 158

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
            ++++ +Y+H    + I  R+ K S IL ++    KL DF  S  + + +        GT
Sbjct: 159 SVLNSFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIK---GSRGT 213

Query: 118 LGYCAPE--YMRTGVFNEKSNVFSFSVFLFELLTG 150
             +  PE     +     K +++S  + L+ +   
Sbjct: 214 YEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYN 248

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 47/240 (19%), Positives = 87/240 (36%), Gaps = 30/240 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI--LGAPQPHF-EPLLLKHRLKIAM 57
           Q++H +++K     +E     +V E    G L   I      +    E  + K      +
Sbjct: 88  QLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWK----YFV 143

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
            +  AL ++H    R ++ R+ K + +      V KL D  L       +T    +++GT
Sbjct: 144 QLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLG-RFFSSKTTAAHSLVGT 199

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
             Y +PE +    +N KS+++S    L+E+               L  PF     N    
Sbjct: 200 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAA-------------LQSPFYGDKMN---- 242

Query: 178 NRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLS 237
                +   I   D   +  +       Q+   CI   P  RP +  V    ++++   +
Sbjct: 243 --LYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA 300

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 11/149 (7%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
            H   ++L     E  I  L  E     +L            E  +         D + A
Sbjct: 115 QHPCCVRLEQAWEEGGILYLQTELCG-PSLQQHCEAWGASLPEAQVWG----YLRDTLLA 169

Query: 63  LAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCA 122
           LA+LH    + +V  + K + I        KL DF L + +        +   G   Y A
Sbjct: 170 LAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA--GEVQEGDPRYMA 224

Query: 123 PEYMRTGVFNEKSNVFSFSVFLFELLTGW 151
           PE ++   +   ++VFS  + + E+    
Sbjct: 225 PELLQGS-YGTAADVFSLGLTILEVACNM 252

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 21/157 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q  H +I++L G   ++   ++V E ++ G+L D  L      F  + L   + +   I 
Sbjct: 102 QFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL-DSFLRKHDAQFTVIQL---VGMLRGIA 157

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             + YL      H    R +  RN     IL N   V K+ DF L   + +       T 
Sbjct: 158 SGMKYLSDMGYVH----RDLAARN-----ILINSNLVCKVSDFGLGRVLEDDPEAAYTTR 208

Query: 115 MGTLGY--CAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            G +     +PE +    F   S+V+S+ + L+E+++
Sbjct: 209 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 63.8 bits (156), Expect = 3e-12
 Identities = 56/274 (20%), Positives = 100/274 (36%), Gaps = 88/274 (32%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTL-------------------WDRILGAPQ 41
           Q++H H++KL G C +    +L+ E  +YG+L                            
Sbjct: 82  QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141

Query: 42  PHFEPLLLKHRLKIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLF 95
           P    L +   +  A  I   + YL      H    R +  RN     IL  E    K+ 
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYLAEMKLVH----RDLAARN-----ILVAEGRKMKIS 192

Query: 96  DFSLSISIPEGETHITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL 148
           DF LS  + E ++++  +        M      A E +   ++  +S+V+SF V L+E++
Sbjct: 193 DFGLSRDVYEEDSYVKRSQGRIPVKWM------AIESLFDHIYTTQSDVWSFGVLLWEIV 246

Query: 149 T----------GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKE 198
           T             + +L+K  H +  P      NC                        
Sbjct: 247 TLGGNPYPGIPPERLFNLLKTGHRMERP-----DNC-----------------------S 278

Query: 199 QQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
           ++++   ++  +C K  P  RP   D++K L ++
Sbjct: 279 EEMY---RLMLQCWKQEPDKRPVFADISKDLEKM 309

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 16/157 (10%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRIL--GAPQPHF-EPLLLKHRLKIA 56
            + H HI++L+     +   + +VFE +    L   I+        + E           
Sbjct: 82  MLKHPHIVELLETY-SSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSE----AVASHYM 136

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILF-NEENVA--KLFDFSLSISIPEGETHITDT 113
             I+ AL Y H      I+ R+ K  C+L  ++EN A  KL  F ++I + E        
Sbjct: 137 RQILEALRYCHD---NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGR 193

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           V GT  + APE ++   + +  +V+   V LF LL+G
Sbjct: 194 V-GTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSG 229

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 13/151 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
            + H +IL++          I L+ E    G L+  +       F+    +       ++
Sbjct: 70  HLRHPNILRMYNY-FHDRKRIYLMLEFAPRGELYKEL--QKHGRFDE---QRSATFMEEL 123

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
             AL Y H    R ++ R+ K   +L   +   K+ DF  S+  P        T+ GTL 
Sbjct: 124 ADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRR---TMCGTLD 177

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           Y  PE +     +EK +++   V  +E L G
Sbjct: 178 YLPPEMIEGKTHDEKVDLWCAGVLCYEFLVG 208

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 55/253 (21%), Positives = 94/253 (37%), Gaps = 62/253 (24%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q SH++I++L G   +    +++ E ++ G L D+ L      F  L L   + +   I 
Sbjct: 102 QFSHHNIIRLEGVISKYKPMMIITEYMENGAL-DKFLREKDGEFSVLQL---VGMLRGIA 157

Query: 61  HALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
             + YL      H    R +  RN     IL N   V K+ DF LS  + +       T 
Sbjct: 158 AGMKYLANMNYVH----RDLAARN-----ILVNSNLVCKVSDFGLSRVLEDDPEATYTTS 208

Query: 115 MGTLGY--CAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GW---DVSDLVKDVHD 162
            G +     APE +    F   S+V+SF + ++E++T            +V   + D   
Sbjct: 209 GGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFR 268

Query: 163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM 222
           L  P      +C                          ++   Q+  +C +   A RP  
Sbjct: 269 LPTP-----MDCPSA-----------------------IY---QLMMQCWQQERARRPKF 297

Query: 223 VDVAKKLRQIYRS 235
            D+   L ++ R+
Sbjct: 298 ADIVSILDKLIRA 310

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 62.6 bits (153), Expect = 7e-12
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
            + H +IL+L G        + L+ E    GT++  +       F+    +       ++
Sbjct: 65  HLRHPNILRLYGY-FHDATRVYLILEYAPLGTVYREL--QKLSKFDE---QRTATYITEL 118

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
            +AL+Y H    + ++ R+ K   +L       K+ DF  S+  P   +     + GTL 
Sbjct: 119 ANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---SSRRTDLCGTLD 172

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           Y  PE +   + +EK +++S  V  +E L G
Sbjct: 173 YLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 203

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 62.7 bits (153), Expect = 7e-12
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 15/155 (9%)

Query: 1   QMSHNHILKLIGCCLETPIP----ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIA 56
            + H +I++       T       +LV E +  GTL   +       F+ + +K      
Sbjct: 81  GLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK-----RFKVMKIKVLRSWC 135

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVM 115
             I+  L +LH   P PI+ R+ K   I         K+ D  L+             V+
Sbjct: 136 RQILKGLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAK---AVI 191

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  + APE       +E  +V++F + + E+ T 
Sbjct: 192 GTPEFMAPEMYEEKY-DESVDVYAFGMCMLEMATS 225

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 63.1 bits (153), Expect = 7e-12
 Identities = 16/146 (10%), Positives = 45/146 (30%), Gaps = 25/146 (17%)

Query: 45  EPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP 104
           + L+   RL++ + ++  LA LH      +V    +   I+ ++     L  F     + 
Sbjct: 201 KSLVHHARLQLTLQVIRLLASLHH---YGLVHTYLRPVDIVLDQRGGVFLTGFEH--LVR 255

Query: 105 EGETHITDTVMGTLGYCAPEYM-----------RTGVFNEKSNVFSFSVFLFELLTGW-- 151
           +G          + G+  PE             R  +     + ++  + ++ +      
Sbjct: 256 DGARV---VSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLP 312

Query: 152 ----DVSDLVKDVHDLVCPFSEYLKN 173
                     + +        + ++ 
Sbjct: 313 ITKDAALGGSEWIFRSCKNIPQPVRA 338

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 63.1 bits (153), Expect = 8e-12
 Identities = 15/133 (11%), Positives = 35/133 (26%), Gaps = 12/133 (9%)

Query: 22  LVFESVQYGTLWDRI--LGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF 79
           L+  +     L      L           +     +   ++   A L     + +V  +F
Sbjct: 165 LLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQS---KGLVHGHF 220

Query: 80  KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYM--RTGVFNEKSNV 137
               +    +    L D S    +              + Y   E++   T  F    N 
Sbjct: 221 TPDNLFIMPDGRLMLGDVSALWKVGT----RGPASSVPVTYAPREFLNASTATFTHALNA 276

Query: 138 FSFSVFLFELLTG 150
           +   + ++ +   
Sbjct: 277 WQLGLSIYRVWCL 289

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 62.8 bits (152), Expect = 9e-12
 Identities = 13/141 (9%), Positives = 41/141 (29%), Gaps = 16/141 (11%)

Query: 45  EPLLLKHRLKIAMDIVHALAYLH-FGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI 103
           + L+   RL++ + ++  LA LH +G    +V    +   I+ ++     L  F   +  
Sbjct: 206 KSLVHHARLQLTLQVIRLLASLHHYG----LVHTYLRPVDIVLDQRGGVFLTGFEHLVRD 261

Query: 104 PEGETHITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELLTGW------D 152
                             A   +        +     + ++  + ++ +           
Sbjct: 262 GASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDA 321

Query: 153 VSDLVKDVHDLVCPFSEYLKN 173
                + +        + ++ 
Sbjct: 322 ALGGSEWIFRSCKNIPQPVRA 342

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 34/199 (17%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESV---------QY---GTLWDRILGAPQPHFEPLL 48
           ++ H  I++     LE      +  S          Q      L D + G          
Sbjct: 59  KLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERER- 117

Query: 49  LKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-------- 100
               L I + I  A+ +LH    + ++ R+ K S I F  ++V K+ DF L         
Sbjct: 118 -SVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEE 173

Query: 101 ---ISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL----TGWDV 153
              +  P          +GT  Y +PE +    ++ K ++FS  + LFELL    T  + 
Sbjct: 174 EQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMER 233

Query: 154 SDLVKDVHDLVCP--FSEY 170
              + DV +L  P  F++ 
Sbjct: 234 VRTLTDVRNLKFPPLFTQK 252

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 62.6 bits (152), Expect = 1e-11
 Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 24/191 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
             S  + +  +          +  +  +   L D +    +   E       L I + I 
Sbjct: 117 PFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWM--NRRCSLEDREHGVCLHIFIQIA 174

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS------------ISIPEGET 108
            A+ +LH    + ++ R+ K S I F  ++V K+ DF L             ++      
Sbjct: 175 EAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYA 231

Query: 109 HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL----TGWDVSDLVKDVHDLV 164
             T  V GT  Y +PE +    ++ K ++FS  + LFELL    T  +   ++ DV +L 
Sbjct: 232 THTGQV-GTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRNLK 290

Query: 165 CP--FSEYLKN 173
            P  F++    
Sbjct: 291 FPLLFTQKYPQ 301

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 41/173 (23%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTL-------------WDRILGAPQPHFEPLLL 49
           +H +I+ L+G C      +++ E   YG L                     +     L L
Sbjct: 85  NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDL 144

Query: 50  KHRLKIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI 103
           +  L  +  +   +A+L      H    R +  RN     IL     + K+ DF L+  I
Sbjct: 145 EDLLSFSYQVAKGMAFLASKNCIH----RDLAARN-----ILLTHGRITKICDFGLARDI 195

Query: 104 PEGETHITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
                ++           M      APE +   V+  +S+V+S+ +FL+EL +
Sbjct: 196 KNDSNYVVKGNARLPVKWM------APESIFNCVYTFESDVWSYGIFLWELFS 242

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 16/155 (10%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
            + H +I++L            L+F+ V  G L++ I+   + ++ E             
Sbjct: 66  LLKHPNIVRLHDSI-SEEGHHYLIFDLVTGGELFEDIVA--REYYSE----ADASHCIQQ 118

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF--NEENVA-KLFDFSLSISIPEGETHITDTVM 115
           I+ A+ + H      +V RN K   +L     +  A KL DF L+I +   +        
Sbjct: 119 ILEAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFA- 174

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT GY +PE +R   + +  ++++  V L+ LL G
Sbjct: 175 GTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVG 209

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 54/266 (20%), Positives = 91/266 (34%), Gaps = 83/266 (31%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTL-----------WDRILGAPQPHFEPLLLKHR 52
           H +I+ L+G C       L  E   +G L            D            L  +  
Sbjct: 85  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 144

Query: 53  LKIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEG 106
           L  A D+   + YL      H    R +  RN     IL  E  VAK+ DF LS      
Sbjct: 145 LHFAADVARGMDYLSQKQFIH----RDLAARN-----ILVGENYVAKIADFGLS---RGQ 192

Query: 107 ETHITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-------GWD 152
           E ++  T+       M      A E +   V+   S+V+S+ V L+E+++       G  
Sbjct: 193 EVYVKKTMGRLPVRWM------AIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT 246

Query: 153 VSDLVKDVHD---LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTF 209
            ++L + +     L  P      NC ++                       ++    +  
Sbjct: 247 CAELYEKLPQGYRLEKP-----LNCDDE-----------------------VY---DLMR 275

Query: 210 ECIKDSPADRPSMVDVAKKLRQIYRS 235
           +C ++ P +RPS   +   L ++   
Sbjct: 276 QCWREKPYERPSFAQILVSLNRMLEE 301

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 20/158 (12%)

Query: 4   HNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
           H ++++   C  +      +  E     TL + +      H         + +       
Sbjct: 77  HPNVIRYF-CTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLG----LEPITLLQQTTSG 130

Query: 63  LAYLHFGFPRPIVFRNFKTSCILFNEEN-----VAKLFDFSLSISIPEGE--THITDTVM 115
           LA+LH      IV R+ K   IL +  N      A + DF L   +  G         V 
Sbjct: 131 LAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVP 187

Query: 116 GTLGYCAPEYMRTGVF---NEKSNVFSFSVFLFELLTG 150
           GT G+ APE +            ++FS     + +++ 
Sbjct: 188 GTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISE 225

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 17/155 (10%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
           ++SH +I+KL     ETP  I LV E V  G L+DRI+   + ++ E    +        
Sbjct: 104 RLSHPNIIKLKEIF-ETPTEISLVLELVTGGELFDRIVE--KGYYSE----RDAADAVKQ 156

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITDTVM 115
           I+ A+AYLH      IV R+ K   +L+     +   K+ DF LS  +      +  TV 
Sbjct: 157 ILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV--LMKTVC 211

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT GYCAPE +R   +  + +++S  +  + LL G
Sbjct: 212 GTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCG 246

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 16/152 (10%)

Query: 4   HNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMDIVH 61
           H +I+KL        +   LV E +  G L++RI    + HF E         I   +V 
Sbjct: 65  HPNIVKLHEVF-HDQLHTFLVMELLNGGELFERIKK--KKHFSE----TEASYIMRKLVS 117

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           A++++H      +V R+ K   +LF   N+    K+ DF  +   P     +      TL
Sbjct: 118 AVSHMHD---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPC-FTL 173

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            Y APE +    ++E  +++S  V L+ +L+G
Sbjct: 174 HYAAPELLNQNGYDESCDLWSLGVILYTMLSG 205

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 80/264 (30%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTL-----------WDRILGAPQPHFEPLLL 49
           ++ H +++ L+G   +     ++F    +G L                   +     L  
Sbjct: 68  RLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEP 127

Query: 50  KHRLKIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI 103
              + +   I   + YL      H    + +  RN     +L  ++   K+ D  L   +
Sbjct: 128 PDFVHLVAQIAAGMEYLSSHHVVH----KDLATRN-----VLVYDKLNVKISDLGLFREV 178

Query: 104 PEGETHITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT------- 149
              + +            M      APE +  G F+  S+++S+ V L+E+ +       
Sbjct: 179 YAADYYKLLGNSLLPIRWM------APEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYC 232

Query: 150 ---GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQ 206
                DV +++++   L CP      +C                          ++    
Sbjct: 233 GYSNQDVVEMIRNRQVLPCP-----DDC-----------------------PAWVY---A 261

Query: 207 VTFECIKDSPADRPSMVDVAKKLR 230
           +  EC  + P+ RP   D+  +LR
Sbjct: 262 LMIECWNEFPSRRPRFKDIHSRLR 285

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 37/169 (21%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTLWD---------RILGAPQPHFEPLLLKHRL 53
            H +I+ L+G C      +++ E   YG L +             A          +  L
Sbjct: 108 QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLL 167

Query: 54  KIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE 107
             +  +   +A+L      H    R +  RN     +L    +VAK+ DF L+  I    
Sbjct: 168 HFSSQVAQGMAFLASKNCIH----RDVAARN-----VLLTNGHVAKIGDFGLARDIMNDS 218

Query: 108 THITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
            +I           M      APE +   V+  +S+V+S+ + L+E+ +
Sbjct: 219 NYIVKGNARLPVKWM------APESIFDCVYTVQSDVWSYGILLWEIFS 261

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 21/164 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
           ++ H +I++L     +      LVF+ V  G L++ I+   +  + E             
Sbjct: 84  KLQHPNIVRLHDSI-QEESFHYLVFDLVTGGELFEDIVA--REFYSE----ADASHCIQQ 136

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF--NEENVA-KLFDFSLSISIPEGETHITDTVM 115
           I+ ++AY H      IV RN K   +L     +  A KL DF L+I + + E        
Sbjct: 137 ILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA--WHGFA 191

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG----WDVSD 155
           GT GY +PE ++   +++  ++++  V L+ LL G    WD   
Sbjct: 192 GTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ 235

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
            + H +I++L     E    I LV E    G L++R++   +  F E        +I  D
Sbjct: 62  SLDHPNIIRLYETF-EDNTDIYLVMELCTGGELFERVVH--KRVFRE----SDAARIMKD 114

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITDTVM 115
           ++ A+AY H      +  R+ K    LF   + ++  KL DF L+     G+     T +
Sbjct: 115 VLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMM--RTKV 169

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  Y +P+ +  G++  + + +S  V ++ LL G
Sbjct: 170 GTPYYVSPQVLE-GLYGPECDEWSAGVMMYVLLCG 203

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 34/177 (19%)

Query: 1   QMSHNHILKLIGCCLETPIPI-------------LVFESVQYGTLWDRILGAPQPHFEPL 47
            ++H ++++     LE    +             +  E  + GTL+D I           
Sbjct: 58  SLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQR-- 115

Query: 48  LLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS------- 100
                 ++   I+ AL+Y+H    + I+ R+ K   I  +E    K+ DF L+       
Sbjct: 116 --DEYWRLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSL 170

Query: 101 ------ISIPEGETHITDTVMGTLGYCAPEYMR-TGVFNEKSNVFSFSVFLFELLTG 150
                      G +    + +GT  Y A E +  TG +NEK +++S  +  FE++  
Sbjct: 171 DILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYP 227

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 59.9 bits (146), Expect = 6e-11
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 18/155 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
           ++ H +I+KL     E      +V E    G L+D I+   +  F E        +I   
Sbjct: 77  KLDHPNIMKLFEIL-EDSSSFYIVGELYTGGELFDEIIK--RKRFSE----HDAARIIKQ 129

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITDTVM 115
           +   + Y+H      IV R+ K   IL     ++   K+ DF LS    +         +
Sbjct: 130 VFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM--KDRI 184

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  Y APE +R G ++EK +V+S  V L+ LL+G
Sbjct: 185 GTAYYIAPEVLR-GTYDEKCDVWSAGVILYILLSG 218

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 59.6 bits (145), Expect = 8e-11
 Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 45/193 (23%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQP--HF-EPLLLKHRLKIA 56
            + H +I+K+     E    + +V E+ + G L +RI+ A        E     +  ++ 
Sbjct: 76  SLDHPNIIKIFEVF-EDYHNMYIVMETCEGGELLERIVSAQARGKALSE----GYVAELM 130

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITDT 113
             +++ALAY H    + +V ++ K   ILF   +  +  K+ DF L+      E      
Sbjct: 131 KQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHS--TN 185

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG----------------------- 150
             GT  Y APE  +      K +++S  V ++ LLTG                       
Sbjct: 186 AAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNY 244

Query: 151 ----WDVSDLVKD 159
                 ++    D
Sbjct: 245 AVECRPLTPQAVD 257

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 59.2 bits (144), Expect = 9e-11
 Identities = 45/261 (17%), Positives = 81/261 (31%), Gaps = 78/261 (29%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++SH H++   G C+     ILV E V++G+L D  L   +     L     L++A  + 
Sbjct: 68  KLSHKHLVLNYGVCVCGDENILVQEFVKFGSL-DTYLKKNKNCINILWK---LEVAKQLA 123

Query: 61  HALAYL------HFGFPRPIVFRN---FKTSCILFNEENVAKLFDFSLSISIPEGETHIT 111
            A+ +L      H      +  +N    +            KL D  +SI++   +    
Sbjct: 124 AAMHFLEENTLIH----GNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKD---- 175

Query: 112 DTVMGTLGY------CAPEYMRTG-VFNEKSNVFSFSVFLFELLT----------GWDVS 154
                            PE +      N  ++ +SF   L+E+ +               
Sbjct: 176 -------ILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKL 228

Query: 155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKD 214
              +D H L  P     K                           +L     +   C+  
Sbjct: 229 QFYEDRHQLPAP-----KAA-------------------------ELA---NLINNCMDY 255

Query: 215 SPADRPSMVDVAKKLRQIYRS 235
            P  RPS   + + L  ++  
Sbjct: 256 EPDHRPSFRAIIRDLNSLFTP 276

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 59.5 bits (145), Expect = 9e-11
 Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 27/160 (16%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRL------ 53
           ++ H +I++L     +      LVF+ V  G L++ I+            +         
Sbjct: 61  KLQHPNIVRLHDSI-QEESFHYLVFDLVTGGELFEDIVA-----------REFYSEADAS 108

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILF--NEENVA-KLFDFSLSISIPEGETHI 110
                I+ ++AY H      IV RN K   +L     +  A KL DF L+I + + E   
Sbjct: 109 HCIQQILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA-- 163

Query: 111 TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
                GT GY +PE ++   +++  ++++  V L+ LL G
Sbjct: 164 WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVG 203

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 29/162 (17%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRL------K 54
           +++H  I+K+     +     +V E ++ G L+D+++G             RL       
Sbjct: 196 KLNHPCIIKIKNFF-DAEDYYIVLELMEGGELFDKVVG-----------NKRLKEATCKL 243

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHIT 111
               ++ A+ YLH      I+ R+ K   +L     E+ + K+ DF  S  + E    + 
Sbjct: 244 YFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETS--LM 298

Query: 112 DTVMGTLGYCAPE---YMRTGVFNEKSNVFSFSVFLFELLTG 150
            T+ GT  Y APE    + T  +N   + +S  V LF  L+G
Sbjct: 299 RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSG 340

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 20/158 (12%)

Query: 2   MSHNHILKLIGCCLETPIPI-----LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKI 55
               HI+ ++    E          ++ E ++ G L+ RI       F E    +   +I
Sbjct: 79  SGGPHIVCILDVY-ENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTE----REAAEI 133

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITD 112
             DI  A+ +LH      I  R+ K   +L+    ++ V KL DF  +    +       
Sbjct: 134 MRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQ--- 187

Query: 113 TVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           T   T  Y APE +    +++  +++S  V ++ LL G
Sbjct: 188 TPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 225

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 34  DRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAK 93
           D++L       E +L K    +++ ++  L YL       I+ R+ K S IL N     K
Sbjct: 119 DQVLKKAGRIPEQILGK----VSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIK 172

Query: 94  LFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           L DF +S  + +    + ++ +GT  Y +PE ++   ++ +S+++S  + L E+  G
Sbjct: 173 LCDFGVSGQLIDS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 226

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 35/162 (21%)

Query: 2   MSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRL------K 54
           ++H +I+KL    +ET   + L+ E    G ++D ++              R+       
Sbjct: 71  LNHPNIVKLFEV-IETEKTLYLIMEYASGGEVFDYLVA-----------HGRMKEKEARS 118

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
               IV A+ Y H    + IV R+ K   +L + +   K+ DF  S     G     D  
Sbjct: 119 KFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG--KLDAF 173

Query: 115 MGTLGYCAPEYMRTGVFNEK------SNVFSFSVFLFELLTG 150
            G   Y APE     +F  K       +V+S  V L+ L++G
Sbjct: 174 CGAPPYAAPE-----LFQGKKYDGPEVDVWSLGVILYTLVSG 210

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 46/178 (25%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTL------------------WDRILGAPQPHF 44
           SH +I+ L+G C  +    L+FE   YG L                   ++     +   
Sbjct: 107 SHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDL 166

Query: 45  EPLLLKHRLKIAMDIVHALAYL------HFGFPRPIVFRNFKTSCILFNEENVAKLFDFS 98
             L  +  L  A  +   + +L      H    R +  RN     +L     V K+ DF 
Sbjct: 167 NVLTFEDLLCFAYQVAKGMEFLEFKSCVH----RDLAARN-----VLVTHGKVVKICDFG 217

Query: 99  LSISIPEGETHITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT 149
           L+  I     ++           M      APE +  G++  KS+V+S+ + L+E+ +
Sbjct: 218 LARDIMSDSNYVVRGNARLPVKWM------APESLFEGIYTIKSDVWSYGILLWEIFS 269

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 23/157 (14%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRL------ 53
            ++H H++   G   E    + +V E  +  +L +               +  L      
Sbjct: 71  SLAHQHVVGFHGF-FEDNDFVFVVLELCRRRSLLELHKR-----------RKALTEPEAR 118

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
                IV    YLH      ++ R+ K   +  NE+   K+ DF L+ +  E +      
Sbjct: 119 YYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA-TKVEYDGERKKV 174

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           + GT  Y APE +     + + +V+S    ++ LL G
Sbjct: 175 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVG 211

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 10/150 (6%)

Query: 2   MSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           + H  IL+L     E    + LV E    G +   +    +P  E    + R      I+
Sbjct: 68  LKHPSILELYNY-FEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSEN---EAR-HFMHQII 122

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             + YLH      I+ R+   S +L       K+ DF L+ +  +       T+ GT  Y
Sbjct: 123 TGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIADFGLA-TQLKMPHEKHYTLCGTPNY 178

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            +PE         +S+V+S     + LL G
Sbjct: 179 ISPEIATRSAHGLESDVWSLGCMFYTLLIG 208

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 30/160 (18%)

Query: 4   HNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRL------KIA 56
           H +I++L     ET     LVF+ ++ G L+D +             K  L      KI 
Sbjct: 83  HPNIIQLKDTY-ETNTFFFLVFDLMKKGELFDYLTE-----------KVTLSEKETRKIM 130

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG 116
             ++  +  LH      IV R+ K   IL +++   KL DF  S  +  GE      V G
Sbjct: 131 RALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGE--KLREVCG 185

Query: 117 TLGYCAPEYMRTGVFNEKSN------VFSFSVFLFELLTG 150
           T  Y APE +   + +          ++S  V ++ LL G
Sbjct: 186 TPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAG 225

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 57.1 bits (138), Expect = 8e-10
 Identities = 48/202 (23%), Positives = 65/202 (32%), Gaps = 51/202 (25%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRL------ 53
           ++ H +I +L     E    I LV E    G L D++            +          
Sbjct: 84  KLHHPNIARLYEV-YEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPC 142

Query: 54  -----------------------------KIAMDIVHALAYLHFGFPRPIVFRNFKTSCI 84
                                         I   I  AL YLH    + I  R+ K    
Sbjct: 143 PECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHN---QGICHRDIKPENF 199

Query: 85  LF--NEENVAKLFDFSLSISIP---EGETHITDTVMGTLGYCAPEYMRTGV--FNEKSNV 137
           LF  N+    KL DF LS        GE +   T  GT  + APE + T    +  K + 
Sbjct: 200 LFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDA 259

Query: 138 FSFSVFLFELLTG----WDVSD 155
           +S  V L  LL G      V+D
Sbjct: 260 WSAGVLLHLLLMGAVPFPGVND 281

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 57.2 bits (138), Expect = 8e-10
 Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 21/164 (12%)

Query: 1   QMSHNHILKLIGC--CLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMD 58
           +++H +I+KL        T   +L+ E    G+L+  +      +   L     L +  D
Sbjct: 63  KLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVL--EEPSNAYGLPESEFLIVLRD 120

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF----NEENVAKLFDFSLSISIPEGETHITDTV 114
           +V  + +L       IV RN K   I+     + ++V KL DF  +  + + E     ++
Sbjct: 121 VVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ--FVSL 175

Query: 115 MGTLGYCAPEYMRTGV--------FNEKSNVFSFSVFLFELLTG 150
            GT  Y  P+     V        +    +++S  V  +   TG
Sbjct: 176 YGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATG 219

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 57.1 bits (138), Expect = 8e-10
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 31/173 (17%)

Query: 4   HNHILKLIGCCLETPIPI-LVFESVQYGTLWDRIL--GAPQPHFEPLLLKHRLKIAMDIV 60
           H ++++   C   T   + +  E      L D +        + +     + + +   I 
Sbjct: 68  HPNVIRYY-CSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIA 125

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENV-------------AKLFDFSLSISIPEGE 107
             +A+LH      I+ R+ K   IL +  +                + DF L   +  G+
Sbjct: 126 SGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQ 182

Query: 108 ---THITDTVMGTLGYCAPEYMRTGVF-------NEKSNVFSFSVFLFELLTG 150
                  +   GT G+ APE +                ++FS     + +L+ 
Sbjct: 183 SSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSK 235

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 4   HNHILKLIGCCLETPIPI-----LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAM 57
             HI++++    E          +V E +  G L+ RI       F E    +   +I  
Sbjct: 114 CPHIVRIVDVY-ENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTE----REASEIMK 168

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITDTV 114
            I  A+ YLH      I  R+ K   +L+       + KL DF  +       +    T 
Sbjct: 169 SIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL--TTP 223

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
             T  Y APE +    +++  +++S  V ++ LL G
Sbjct: 224 CYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 259

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 18/155 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
           ++ H +I+ L     E+     LV + V  G L+DRIL   +  + E    K    +   
Sbjct: 62  KIKHENIVTLEDIY-ESTTHYYLVMQLVSGGELFDRILE--RGVYTE----KDASLVIQQ 114

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITDTVM 115
           ++ A+ YLH      IV R+ K   +L+    E +   + DF LS     G      T  
Sbjct: 115 VLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMS---TAC 168

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT GY APE +    +++  + +S  V  + LL G
Sbjct: 169 GTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCG 203

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 23/157 (14%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRL------ 53
            ++H H++   G   E    + +V E  +  +L +               +  L      
Sbjct: 97  SLAHQHVVGFHGF-FEDNDFVFVVLELCRRRSLLELHKR-----------RKALTEPEAR 144

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
                IV    YLH      ++ R+ K   +  NE+   K+ DF L+ +  E +      
Sbjct: 145 YYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA-TKVEYDGERKKV 200

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           + GT  Y APE +     + + +V+S    ++ LL G
Sbjct: 201 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVG 237

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 21/164 (12%)

Query: 1   QMSHNHILKLIGC--CLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMD 58
           +++H +I+KL        T   +L+ E    G+L+  +      +   L     L +  D
Sbjct: 63  KLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVL--EEPSNAYGLPESEFLIVLRD 120

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF----NEENVAKLFDFSLSISIPEGETHITDTV 114
           +V  + +L       IV RN K   I+     + ++V KL DF  +  + + E     ++
Sbjct: 121 VVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ--FVSL 175

Query: 115 MGTLGYCAPEYMRTGV--------FNEKSNVFSFSVFLFELLTG 150
            GT  Y  P+     V        +    +++S  V  +   TG
Sbjct: 176 YGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATG 219

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 24/164 (14%)

Query: 4   HNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMDIVH 61
           H HI+ LI    E+   + LVF+ ++ G L+D +    +    E    K    I   ++ 
Sbjct: 159 HPHIITLIDSY-ESSSFMFLVFDLMRKGELFDYLTE--KVALSE----KETRSIMRSLLE 211

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYC 121
           A+++LH      IV R+ K   IL ++    +L DF  S  +  GE      + GT GY 
Sbjct: 212 AVSFLHA---NNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGE--KLRELCGTPGYL 266

Query: 122 APEYMRTGVFNEKSN------VFSFSVFLFELLTG----WDVSD 155
           APE ++  +            +++  V LF LL G    W    
Sbjct: 267 APEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ 310

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 29/153 (18%), Positives = 59/153 (38%), Gaps = 13/153 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
            + H  ++ L     E    + +++E +  G L++++        E       ++    +
Sbjct: 210 VLRHPTLVNLHDAF-EDDNEMVMIYEFMSGGELFEKVADEHNKMSE----DEAVEYMRQV 264

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILF--NEENVAKLFDFSLSISIPEGETHITDTVMGT 117
              L ++H       V  + K   I+F     N  KL DF L+  +   ++       GT
Sbjct: 265 CKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS--VKVTTGT 319

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
             + APE          ++++S  V  + LL+G
Sbjct: 320 AEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSG 352

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 24/170 (14%)

Query: 2   MSHNHILKLIGCCLETPIP-------ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLK 54
             H +I++                   L+   +  G L + +         PL     LK
Sbjct: 83  SGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRG--PLSCDTVLK 140

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDF---SLSISIPEGETHIT 111
           I      A+ ++H   P PI+ R+ K   +L + +   KL DF   +     P+      
Sbjct: 141 IFYQTCRAVQHMHRQKP-PIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQ 199

Query: 112 D--------TVMGTLGYCAPE---YMRTGVFNEKSNVFSFSVFLFELLTG 150
                    T   T  Y  PE           EK ++++    L+ L   
Sbjct: 200 RRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFR 249

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 18/156 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
           Q+ H++++ L     E    + L+ E V  G L+D +  A +    E    +        
Sbjct: 71  QVLHHNVITLHDVY-ENRTDVVLILELVSGGELFDFL--AQKESLSE----EEATSFIKQ 123

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVA----KLFDFSLSISIPEGETHITDTV 114
           I+  + YLH    + I   + K   I+  ++N+     KL DF L+  I +G       +
Sbjct: 124 ILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGV--EFKNI 178

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            GT  + APE +       +++++S  V  + LL+G
Sbjct: 179 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 214

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 17/153 (11%)

Query: 4   HNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMDIVH 61
           H +I+ L     +    + +V E ++ G L D+IL   Q  F E    +    +   I  
Sbjct: 75  HPNIITLKDVY-DDGKYVYVVTELMKGGELLDKILR--QKFFSE----REASAVLFTITK 127

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILF--NEENVA--KLFDFSLSISIPEGETHITDTVMGT 117
            + YLH    + +V R+ K S IL+     N    ++ DF  +  +   E  +  T   T
Sbjct: 128 TVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQL-RAENGLLMTPCYT 183

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
             + APE +    ++   +++S  V L+ +LTG
Sbjct: 184 ANFVAPEVLERQGYDAACDIWSLGVLLYTMLTG 216

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 29/162 (17%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRL------K 54
           +++H  I+K+     +     +V E ++ G L+D+++G             RL       
Sbjct: 71  KLNHPCIIKIKNFF-DAEDYYIVLELMEGGELFDKVVG-----------NKRLKEATCKL 118

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHIT 111
               ++ A+ YLH      I+ R+ K   +L     E+ + K+ DF  S  + E    + 
Sbjct: 119 YFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETS--LM 173

Query: 112 DTVMGTLGYCAPE---YMRTGVFNEKSNVFSFSVFLFELLTG 150
            T+ GT  Y APE    + T  +N   + +S  V LF  L+G
Sbjct: 174 RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSG 215

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 17/155 (10%)

Query: 2   MSHNHILKL---IGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMD 58
           + H +++KL   +    E  +  +VFE V  G + +          +PL          D
Sbjct: 93  LDHPNVVKLVEVLDDPNEDHL-YMVFELVNQGPVMEVP------TLKPLSEDQARFYFQD 145

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           ++  + YLH+   + I+ R+ K S +L  E+   K+ DF +S +  +G   +    +GT 
Sbjct: 146 LIKGIEYLHY---QKIIHRDIKPSNLLVGEDGHIKIADFGVS-NEFKGSDALLSNTVGTP 201

Query: 119 GYCAPE---YMRTGVFNEKSNVFSFSVFLFELLTG 150
            + APE     R     +  +V++  V L+  + G
Sbjct: 202 AFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFG 236

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 18/101 (17%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           +V AL YL     + I+ R+ K   IL +E     + DF+++  +P        T+ GT 
Sbjct: 124 LVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQ--ITTMAGTK 178

Query: 119 GYCAPEYMRTGVFNEKSNV--------FSFSVFLFELLTGW 151
            Y APE     +F+ +           +S  V  +ELL G 
Sbjct: 179 PYMAPE-----MFSSRKGAGYSFAVDWWSLGVTAYELLRGR 214

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 13/153 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q+ H  ++ L     E    + L+ E +  G L+DRI        E       +      
Sbjct: 104 QLHHPKLINLHDAF-EDKYEMVLILEFLSGGELFDRIAAEDYKMSE----AEVINYMRQA 158

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILF--NEENVAKLFDFSLSISIPEGETHITDTVMGT 117
              L ++H      IV  + K   I+    + +  K+ DF L+  +   E         T
Sbjct: 159 CEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV--KVTTAT 213

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
             + APE +        +++++  V  + LL+G
Sbjct: 214 AEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG 246

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 18/156 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
           Q+ H +I+ L     E    + L+ E V  G L+D +  A +    E    +        
Sbjct: 71  QVLHPNIITLHDVY-ENRTDVVLILELVSGGELFDFL--AQKESLSE----EEATSFIKQ 123

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVA----KLFDFSLSISIPEGETHITDTV 114
           I+  + YLH    + I   + K   I+  ++N+     KL DF L+  I +G       +
Sbjct: 124 ILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE--FKNI 178

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            GT  + APE +       +++++S  V  + LL+G
Sbjct: 179 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 214

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 9/95 (9%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           I+  L ++H    R +V+R+ K + IL +E    ++ D  L+    + + H     +GT 
Sbjct: 301 IILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH---ASVGTH 354

Query: 119 GYCAPEYMRTGVFNEKSNV--FSFSVFLFELLTGW 151
           GY APE ++ GV  + S    FS    LF+LL G 
Sbjct: 355 GYMAPEVLQKGVAYDSS-ADWFSLGCMLFKLLRGH 388

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 18/156 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
           ++ H +++ L     E    + L+ E V  G L+D +  A +    E    +   +    
Sbjct: 70  EIQHPNVITLHEVY-ENKTDVILILELVAGGELFDFL--AEKESLTE----EEATEFLKQ 122

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVA----KLFDFSLSISIPEGETHITDTV 114
           I++ + YLH      I   + K   I+  + NV     K+ DF L+  I  G       +
Sbjct: 123 ILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF--KNI 177

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            GT  + APE +       +++++S  V  + LL+G
Sbjct: 178 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 24/160 (15%)

Query: 4   HNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
            + I++L      T   I +V E      L   +        + +    R     +++ A
Sbjct: 87  SDKIIRLYDY-EITDQYIYMVMECGN-IDLNSWLK-----KKKSIDPWERKSYWKNMLEA 139

Query: 63  LAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT-DTVMGTLGYC 121
           +  +H      IV  + K +  L  +  + KL DF ++  +    T +  D+ +GT+ Y 
Sbjct: 140 VHTIHQ---HGIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKDSQVGTVNYM 195

Query: 122 APE-----------YMRTGVFNEKSNVFSFSVFLFELLTG 150
            PE                  + KS+V+S    L+ +  G
Sbjct: 196 PPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYG 235

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           I   L  LH      IV+R+ K   IL ++    ++ D  L++ +PEG+T      +GT+
Sbjct: 295 ICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT--IKGRVGTV 349

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW 151
           GY APE ++   +    + ++    L+E++ G 
Sbjct: 350 GYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQ 382

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 24/160 (15%)

Query: 4   HNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
            + I++L      T   I +V E      L   +        + +    R     +++ A
Sbjct: 115 SDKIIRLYDY-EITDQYIYMVMECGN-IDLNSWLK-----KKKSIDPWERKSYWKNMLEA 167

Query: 63  LAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT-DTVMGTLGYC 121
           +  +H      IV  + K +  L  +  + KL DF ++  +    T +  D+ +G + Y 
Sbjct: 168 VHTIH---QHGIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKDSQVGAVNYM 223

Query: 122 APE-----------YMRTGVFNEKSNVFSFSVFLFELLTG 150
            PE                  + KS+V+S    L+ +  G
Sbjct: 224 PPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYG 263

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 21/132 (15%)

Query: 4   HNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMDIVH 61
           H ++L+LI    E      LVFE ++ G++   I    + HF E         +  D+  
Sbjct: 70  HRNVLELIEFF-EEEDRFYLVFEKMRGGSILSHIHK--RRHFNE----LEASVVVQDVAS 122

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILF-NEENVA--KLFDFSLSISIPEGETHITD------ 112
           AL +LH    + I  R+ K   IL  +   V+  K+ DF L   I               
Sbjct: 123 ALDFLHN---KGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELL 179

Query: 113 TVMGTLGYCAPE 124
           T  G+  Y APE
Sbjct: 180 TPCGSAEYMAPE 191

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 13/153 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q+ H ++++L     E+   I LV E V  G L+DRI+       E       +     I
Sbjct: 142 QLDHANLIQLYDA-FESKNDIVLVMEYVDGGELFDRIIDESYNLTE----LDTILFMKQI 196

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILF--NEENVAKLFDFSLSISIPEGETHITDTVMGT 117
              + ++H      I+  + K   IL    +    K+ DF L+      E        GT
Sbjct: 197 CEGIRHMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK--LKVNFGT 251

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
             + APE +     +  ++++S  V  + LL+G
Sbjct: 252 PEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSG 284

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 21/156 (13%)

Query: 3   SHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EP---LLLKHRLKIAM 57
           S   ++ L     E    I L+ E    G ++   L        E     L+K       
Sbjct: 87  SCPRVINLHEVY-ENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQ------ 139

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILF---NEENVAKLFDFSLSISIPEGETHITDTV 114
            I+  + YLH      IV  + K   IL          K+ DF +S  I          +
Sbjct: 140 -ILEGVYYLHQ---NNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHAC--ELREI 193

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           MGT  Y APE +        +++++  +  + LLT 
Sbjct: 194 MGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTH 229

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 24/160 (15%)

Query: 4   HNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
            + I++L      T   I +V E      L   +        + +    R     +++ A
Sbjct: 68  SDKIIRLYDY-EITDQYIYMVMECGN-IDLNSWLK-----KKKSIDPWERKSYWKNMLEA 120

Query: 63  LAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT-DTVMGTLGYC 121
           +  +H      IV  + K +  L  +  + KL DF ++  +    T +  D+ +GT+ Y 
Sbjct: 121 VHTIHQ---HGIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKDSQVGTVNYM 176

Query: 122 APE-----------YMRTGVFNEKSNVFSFSVFLFELLTG 150
            PE                  + KS+V+S    L+ +  G
Sbjct: 177 PPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYG 216

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 18/156 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
           ++ H +I+ L     E    + L+ E V  G L+D +  A +    E        +    
Sbjct: 64  EIRHPNIITLHDIF-ENKTDVVLILELVSGGELFDFL--AEKESLTE----DEATQFLKQ 116

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF----NEENVAKLFDFSLSISIPEGETHITDTV 114
           I+  + YLH    + I   + K   I+           KL DF ++  I  G       +
Sbjct: 117 ILDGVHYLHS---KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGN--EFKNI 171

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            GT  + APE +       +++++S  V  + LL+G
Sbjct: 172 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 207

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 15/154 (9%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHF-EPLLLKHRLKIAMD 58
              H +IL L     E+   + ++FE +    +++RI         E    +  +     
Sbjct: 57  IARHRNILHLHESF-ESMEELVMIFEFISGLDIFERIN-TSAFELNE----REIVSYVHQ 110

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILF--NEENVAKLFDFSLSISIPEGETHITDTVMG 116
           +  AL +LH      I   + +   I++     +  K+ +F  +  +  G+      +  
Sbjct: 111 VCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF--RLLFT 165

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
              Y APE  +  V +  ++++S    ++ LL+G
Sbjct: 166 APEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSG 199

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 48/196 (24%)

Query: 40  PQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL 99
              + + L L+H +  +  +   + +L     R  + R+     IL +E+NV K+ DF L
Sbjct: 183 EDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGL 239

Query: 100 SISIPEGETHITDTV-------MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT--- 149
           +  I +   ++           M      APE +   V+  +S+V+SF V L+E+ +   
Sbjct: 240 ARDIYKDPDYVRKGDARLPLKWM------APETIFDRVYTIQSDVWSFGVLLWEIFSLGA 293

Query: 150 --------GWDVSDLVKDVHDLVCPFS------EYLKNCFEDN---R--FTEIVDHIVVE 190
                     +    +K+   +  P        + + +C+      R  F+E+V+H+   
Sbjct: 294 SPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL--- 350

Query: 191 DVSSIEKEQQLHASAQ 206
                     L A+AQ
Sbjct: 351 -------GNLLQANAQ 359

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           IV  L +LH    R I++R+ K   +L +++   ++ D  L++ +  G+T  T    GT 
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQT-KTKGYAGTP 353

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW 151
           G+ APE +    ++   + F+  V L+E++   
Sbjct: 354 GFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR 386

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 36/163 (22%)

Query: 2   MSHNHILKLIGCCLETPIPI-LVFES-VQYGTLWDRILGAPQPHFEPLLLKHRL------ 53
           + H +I+K++    E      LV E       L+  I               RL      
Sbjct: 86  VEHANIIKVLDI-FENQGFFQLVMEKHGSGLDLFAFID-----------RHPRLDEPLAS 133

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
            I   +V A+ YL     + I+ R+ K   I+  E+   KL DF  +  +  G+  +  T
Sbjct: 134 YIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGK--LFYT 188

Query: 114 VMGTLGYCAPEYMRTGVFNEKS------NVFSFSVFLFELLTG 150
             GT+ YCAPE     V            ++S  V L+ L+  
Sbjct: 189 FCGTIEYCAPE-----VLMGNPYRGPELEMWSLGVTLYTLVFE 226

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMGT 117
           IV AL YLH    + +V+R+ K   ++ +++   K+ DF L    I +G T    T  GT
Sbjct: 257 IVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT--MKTFCGT 312

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW 151
             Y APE +    +    + +   V ++E++ G 
Sbjct: 313 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 346

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMGT 117
           IV AL YLH    + I+ R+ K   IL NE+   ++ DF  + +  PE +    ++ +GT
Sbjct: 139 IVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGT 195

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW 151
             Y +PE +      + S++++    +++L+ G 
Sbjct: 196 AQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL 229

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 19/107 (17%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
           K+ + IV AL YL       ++ R+ K S IL +E    KL DF +S         + D 
Sbjct: 128 KMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGIS-------GRLVDD 178

Query: 114 V-----MGTLGYCAPE-----YMRTGVFNEKSNVFSFSVFLFELLTG 150
                  G   Y APE           ++ +++V+S  + L EL TG
Sbjct: 179 KAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATG 225

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 14/104 (13%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE---THI 110
           KIA+ IV AL +LH      ++ R+ K S +L N     K+ DF +S     G       
Sbjct: 113 KIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGIS-----GYLVDDVA 165

Query: 111 TDTVMGTLGYCAPE----YMRTGVFNEKSNVFSFSVFLFELLTG 150
            D   G   Y APE     +    ++ KS+++S  + + EL   
Sbjct: 166 KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAIL 209

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 24/158 (15%)

Query: 2   MSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIA---- 56
           ++H +++K  G          L  E    G L+DRI                +       
Sbjct: 62  LNHENVVKFYGH-RREGNIQYLFLEYCSGGELFDRIEP-----------DIGMPEPDAQR 109

Query: 57  --MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDT 113
               ++  + YLH      I  R+ K   +L +E +  K+ DF L+ +        + + 
Sbjct: 110 FFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 166

Query: 114 VMGTLGYCAPE-YMRTGVFNEKSNVFSFSVFLFELLTG 150
           + GTL Y APE   R     E  +V+S  + L  +L G
Sbjct: 167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 204

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 28/158 (17%)

Query: 3   SHNHILKLIGCCLETPIPI-LVFE-SVQYGTLWDRILGAPQPHFEPLLLKHRL------K 54
            H  +++L+    ET     LV E  +    L+D I             K  L       
Sbjct: 96  GHPGVIRLLDW-FETQEGFMLVLERPLPAQDLFDYIT-----------EKGPLGEGPSRC 143

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEE-NVAKLFDFSLSISIPEGETHITDT 113
               +V A+ + H    R +V R+ K   IL +     AKL DF     + +        
Sbjct: 144 FFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYT---D 197

Query: 114 VMGTLGYCAPEYMRTGVFN-EKSNVFSFSVFLFELLTG 150
             GT  Y  PE++    ++   + V+S  + L++++ G
Sbjct: 198 FDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCG 235

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 13/155 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWD--RILGAPQPHFEPLLLKHRLKIAMD 58
            + H +I++ +G   E     +  E V  G+L    R    P    E  +          
Sbjct: 75  HLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGF----YTKQ 130

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGT 117
           I+  L YLH      IV R+ K   +L N  + V K+ DF  S  +       T+T  GT
Sbjct: 131 ILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPC-TETFTGT 186

Query: 118 LGYCAPEYMRTGV--FNEKSNVFSFSVFLFELLTG 150
           L Y APE +  G   + + ++++S    + E+ TG
Sbjct: 187 LQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATG 221

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVM 115
             ++V AL  +H       + R+ K   +L ++    KL DF   + + +      DT +
Sbjct: 174 TAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAV 230

Query: 116 GTLGYCAPEYMRTGVFNEKSNV----FSFSVFLFELLTGW 151
           GT  Y +PE +++   +         +S  VFL+E+L G 
Sbjct: 231 GTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGD 270

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 18/106 (16%)

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT 113
           KI +  V AL +L       I+ R+ K S IL +     KL DF +S         + D+
Sbjct: 129 KITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGIS-------GQLVDS 179

Query: 114 V-----MGTLGYCAPE----YMRTGVFNEKSNVFSFSVFLFELLTG 150
           +      G   Y APE          ++ +S+V+S  + L+EL TG
Sbjct: 180 IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATG 225

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 24/158 (15%)

Query: 2   MSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRL------K 54
           ++H +++K  G          L  E    G L+DRI                +      +
Sbjct: 62  LNHENVVKFYGH-RREGNIQYLFLEYCSGGELFDRIEP-----------DIGMPEPDAQR 109

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDT 113
               ++  + YLH      I  R+ K   +L +E +  K+ DF L+ +        + + 
Sbjct: 110 FFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 166

Query: 114 VMGTLGYCAPE-YMRTGVFNEKSNVFSFSVFLFELLTG 150
           + GTL Y APE   R     E  +V+S  + L  +L G
Sbjct: 167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 204

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 13/155 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            +S   I+ L G   E P   +  E ++ G+L   I          L     L      +
Sbjct: 106 GLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIK-----QMGCLPEDRALYYLGQAL 160

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEE-NVAKLFDFSLSISIPEGETHIT----DTVM 115
             L YLH    R I+  + K   +L + + + A L DF  ++ +       +    D + 
Sbjct: 161 EGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIP 217

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           GT  + APE +     + K +++S    +  +L G
Sbjct: 218 GTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNG 252

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 18/103 (17%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           +V A+  +H       V R+ K   IL +     +L DF   + + E  T  +   +GT 
Sbjct: 184 MVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTP 240

Query: 119 GYCAPEYMRTGVFNEKSNVF----------SFSVFLFELLTGW 151
            Y +PE     +                  S  V ++E+L G 
Sbjct: 241 DYISPE-----ILQAMEGGKGRYGPECDWWSLGVCMYEMLYGE 278

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           IV A+  +H       V R+ K   IL +     +L DF   + +    T  +   +GT 
Sbjct: 171 IVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTP 227

Query: 119 GYCAPEYMRTGVFNEKSNVF-------SFSVFLFELLTGW 151
            Y +PE ++       +  +       +  VF +E+  G 
Sbjct: 228 DYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQ 267

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 30/156 (19%)

Query: 6   HILKLIGCCLETPIPI-LVFESVQ-YGTLWDRILGAPQPHFEPLLLKHRL------KIAM 57
            +++L+    E P    L+ E  +    L+D I             +  L          
Sbjct: 109 GVIRLLDW-FERPDSFVLILERPEPVQDLFDFIT-----------ERGALQEELARSFFW 156

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEE--NVAKLFDFSLSISIPEGETHITDTVM 115
            ++ A+ + H      ++ R+ K   IL +     + KL DF     + +          
Sbjct: 157 QVLEAVRHCH---NCGVLHRDIKDENILIDLNRGEL-KLIDFGSGALLKDTVYT---DFD 209

Query: 116 GTLGYCAPEYMRTGVFN-EKSNVFSFSVFLFELLTG 150
           GT  Y  PE++R   ++   + V+S  + L++++ G
Sbjct: 210 GTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCG 245

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           IV AL +LH      I++R+ K   IL +      L DF LS      ET       GT+
Sbjct: 168 IVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTI 224

Query: 119 GYCAPEYMRTGVFNEKSNV--FSFSVFLFELLTGW 151
            Y AP+ +R G       V  +S  V ++ELLTG 
Sbjct: 225 EYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGA 259

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 18/100 (18%)

Query: 59  IVHALAYLH-FGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMG 116
           I  AL +LH  G    I++R+ K   I+ N +   KL DF L   SI +G    T T  G
Sbjct: 130 ISMALGHLHQKG----IIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTV--THTFCG 183

Query: 117 TLGYCAPEYMRTGVFNEKSNVF-----SFSVFLFELLTGW 151
           T+ Y APE     +     +       S    ++++LTG 
Sbjct: 184 TIEYMAPE-----ILMRSGHNRAVDWWSLGALMYDMLTGA 218

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 22/162 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI-LGAPQPHFEPLLLKHRLKIAM-- 57
             +H +I+      +      +V   + YG+  D I         E         IA   
Sbjct: 82  LFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELA-------IAYIL 134

Query: 58  -DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEG------ETHI 110
             ++ AL Y+H       V R+ K S IL + +    L     ++S+             
Sbjct: 135 QGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDF 191

Query: 111 TDTVMGTLGYCAPEYMRTGV--FNEKSNVFSFSVFLFELLTG 150
               +  L + +PE ++  +  ++ KS+++S  +   EL  G
Sbjct: 192 PKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANG 233

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 18/100 (18%)

Query: 59  IVHALAYLH-FGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMG 116
           +  AL +LH  G    I++R+ K   IL +EE   KL DF LS  SI   +     +  G
Sbjct: 135 LALALDHLHSLG----IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK--AYSFCG 188

Query: 117 TLGYCAPEYMRTGVFNEKSNVF-----SFSVFLFELLTGW 151
           T+ Y APE     V N + +       SF V +FE+LTG 
Sbjct: 189 TVEYMAPE-----VVNRRGHTQSADWWSFGVLMFEMLTGT 223

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           I  +I+  L YLH       + R+ K + +L +E    KL DF ++  + + +    +T 
Sbjct: 124 ILREILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK-RNTF 179

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           +GT  + APE ++   ++ K++++S  +   EL  G
Sbjct: 180 VGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARG 215

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTV 114
           A +I   L +L     + I++R+ K   ++ + E   K+ DF +   +I +G T  T T 
Sbjct: 448 AAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVT--TKTF 502

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW 151
            GT  Y APE +    + +  + ++F V L+E+L G 
Sbjct: 503 CGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 539

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 30/142 (21%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMGT 117
           I  AL YLH    R I++R+ K   +L + E   KL D+ +    +  G+T  T T  GT
Sbjct: 162 ISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT--TSTFCGT 216

Query: 118 LGYCAPEYMRTGVFNEKSNVF-----SFSVFLFELLTGWDVSDLVKDVHDLVCPF-SEYL 171
             Y APE     +   +   F     +  V +FE++ G               PF     
Sbjct: 217 PNYIAPE-----ILRGEDYGFSVDWWALGVLMFEMMAGR-------------SPFDIVGS 258

Query: 172 KNCFEDNRFTEIVDHIVVEDVS 193
            +  + N    +   I+ + + 
Sbjct: 259 SDNPDQNTEDYLFQVILEKQIR 280

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 16/99 (16%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMGT 117
           I   L +L     + I++R+ K   ++ + E   K+ DF +   +I +G T  T T  GT
Sbjct: 130 IAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVT--TKTFCGT 184

Query: 118 LGYCAPEYMRTGVFNEKSNVF-----SFSVFLFELLTGW 151
             Y APE     +   +         +F V L+E+L G 
Sbjct: 185 PDYIAPE-----IIAYQPYGKSVDWWAFGVLLYEMLAGQ 218

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 20/137 (14%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMGT 117
           I  AL YLH    R I++R+ K   +L + E   KL D+ +    +  G+T  T T  GT
Sbjct: 119 ISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT--TSTFCGT 173

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPF-SEYLKNCFE 176
             Y APE +R   +    + ++  V +FE++ G               PF      +  +
Sbjct: 174 PNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGR-------------SPFDIVGSSDNPD 220

Query: 177 DNRFTEIVDHIVVEDVS 193
            N    +   I+ + + 
Sbjct: 221 QNTEDYLFQVILEKQIR 237

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 25/138 (18%)

Query: 1   QMSHNHILKLIGCCLETPIPI--------LVFESVQYGTLWD--RILGAPQPHFEPLLLK 50
            + H +++ LI  C     P         LVF+  ++    D   +L      F    +K
Sbjct: 72  LLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH----DLAGLLSNVLVKFTLSEIK 127

Query: 51  HRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL----SISIPEG 106
               +   +++ L Y+H      I+ R+ K + +L   + V KL DF L    S++    
Sbjct: 128 R---VMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQ 181

Query: 107 ETHITDTVMGTLGYCAPE 124
               T+ V+ TL Y  PE
Sbjct: 182 PNRYTNRVV-TLWYRPPE 198

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 6/94 (6%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMGT 117
           I+  L +LH    + IV+R+ K   IL +++   K+ DF +   ++       T+T  GT
Sbjct: 127 IILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAK--TNTFCGT 181

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW 151
             Y APE +    +N   + +SF V L+E+L G 
Sbjct: 182 PDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ 215

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 16/99 (16%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMGT 117
           IV AL YLH    R +V+R+ K   ++ +++   K+ DF L    I +G T    T  GT
Sbjct: 114 IVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT--MKTFCGT 168

Query: 118 LGYCAPEYMRTGVFNEKSNVF-----SFSVFLFELLTGW 151
             Y APE     V  +             V ++E++ G 
Sbjct: 169 PEYLAPE-----VLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 16/99 (16%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMGT 117
           I+ AL +LH    + I++R+ K   +L + E   KL DF +    I  G T  T T  GT
Sbjct: 133 IISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVT--TATFCGT 187

Query: 118 LGYCAPEYMRTGVFNEKSNVF-----SFSVFLFELLTGW 151
             Y APE     +  E          +  V L+E+L G 
Sbjct: 188 PDYIAPE-----ILQEMLYGPAVDWWAMGVLLYEMLCGH 221

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 35/170 (20%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRIL--GAPQPHF-EPLLLKHRLKIAMDIV 60
           H+H+++      E    ++  E    G+L D I        +F E  L      + + + 
Sbjct: 70  HSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKD----LLLQVG 125

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENV-------------------AKLFDFSLSI 101
             L Y+H      +V  + K S I  +  ++                    K+ D     
Sbjct: 126 RGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVT 182

Query: 102 SIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTG 150
            I            G   + A E ++       K+++F+ ++ +      
Sbjct: 183 RISS-----PQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGA 227

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDF----SLSISIPEGETHI 110
           I  +++  L YLH       + R+ K   IL  E+   ++ DF     L+         +
Sbjct: 126 ILREVLEGLEYLHK---NGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKV 182

Query: 111 TDTVMGTLGYCAPEYM-RTGVFNEKSNVFSFSVFLFELLTG 150
             T +GT  + APE M +   ++ K++++SF +   EL TG
Sbjct: 183 RKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATG 223

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 14/150 (9%), Positives = 38/150 (25%), Gaps = 38/150 (25%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++    + +++         ++V E ++ G+L +    +P P          ++    + 
Sbjct: 87  RIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPV-------GAIRAMQSLA 139

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            A    H      +       S +  + +    L                          
Sbjct: 140 AAADAAH---RAGVALSIDHPSRVRVSIDGDVVL---------------------AYPAT 175

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
                      N + ++      L+ LL  
Sbjct: 176 MPDA-------NPQDDIRGIGASLYALLVN 198

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 16/99 (16%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMGT 117
           I  AL YLH      IV+R+ K   IL + +    L DF L   +I    T  T T  GT
Sbjct: 148 IASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNST--TSTFCGT 202

Query: 118 LGYCAPEYMRTGVFNEKSNVF-----SFSVFLFELLTGW 151
             Y APE     V +++              L+E+L G 
Sbjct: 203 PEYLAPE-----VLHKQPYDRTVDWWCLGAVLYEMLYGL 236

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 14/153 (9%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAM--- 57
           Q    H++K  G   +     +V E    G++ D I    +   E        +IA    
Sbjct: 80  QCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTED-------EIATILQ 132

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGT 117
             +  L YLHF      + R+ K   IL N E  AKL DF ++  + +      +TV+GT
Sbjct: 133 STLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGT 188

Query: 118 LGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
             + APE ++   +N  ++++S  +   E+  G
Sbjct: 189 PFWMAPEVIQEIGYNCVADIWSLGITAIEMAEG 221

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 10/150 (6%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           +  + +I+  +   L      +V E +  G+L D +          +       +  + +
Sbjct: 73  ENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVV------TETCMDEGQIAAVCRECL 126

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            AL +LH      ++ R+ K+  IL   +   KL DF     I   ++    T++GT  +
Sbjct: 127 QALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RSTMVGTPYW 182

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            APE +    +  K +++S  +   E++ G
Sbjct: 183 MAPEVVTRKAYGPKVDIWSLGIMAIEMIEG 212

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 59  IVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
           IV    YLH      +++R+ K   +L +++   ++ DF  +  +       T T+ GT 
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG----RTWTLCGTP 202

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW 151
              APE + +  +N+  + ++  V ++E+  G+
Sbjct: 203 EALAPEIILSKGYNKAVDWWALGVLIYEMAAGY 235

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 36/133 (27%), Positives = 50/133 (37%), Gaps = 22/133 (16%)

Query: 1   QMSHNHILKLIGCCLETPIPI-----LVFESVQY--GTLWDRILGAPQPHFEPLLLKHRL 53
              H ++++L+  C  +         LVFE V     T  D+    P P      +K   
Sbjct: 70  AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKA---PPPGLPAETIK--- 123

Query: 54  KIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL--SISIPEGETHIT 111
            +    +  L +LH      IV R+ K   IL       KL DF L    S     T + 
Sbjct: 124 DLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPV- 179

Query: 112 DTVMGTLGYCAPE 124
             V+ TL Y APE
Sbjct: 180 --VV-TLWYRAPE 189

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 10/150 (6%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
              H +++++    L      ++ E +Q G L D +          L  +    +   ++
Sbjct: 98  DYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIV------SQVRLNEEQIATVCEAVL 151

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            ALAYLH    + ++ R+ K+  IL   +   KL DF     I +       +++GT  +
Sbjct: 152 QALAYLHA---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK-RKSLVGTPYW 207

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            APE +   ++  + +++S  + + E++ G
Sbjct: 208 MAPEVISRSLYATEVDIWSLGIMVIEMVDG 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.97
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.89
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.67
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.4
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.17
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.76
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.63
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.6
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.47
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.91
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.81
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.63
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	97.51
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.28
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.21
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	95.86
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	95.8
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	95.6
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	95.33
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	93.68
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	93.5
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	93.45
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	92.9
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	92.02
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	91.77
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	91.18
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	91.15
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	90.28
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	89.52
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	89.15
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	88.13
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	86.83
3mes_A	424	Choline kinase; malaria, structural genomics, stru	84.42

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=9.7e-53  Score=334.44  Aligned_cols=210  Identities=20%  Similarity=0.316  Sum_probs=161.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||+++|++.+ +..++|||||++|+|.+++....    ..+++..+..++.|++.||+|||   +++|+|||||
T Consensus        88 ~l~HpNIV~l~g~~~~-~~~~iVmEy~~gGsL~~~l~~~~----~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlK  159 (307)
T 3omv_A           88 KTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYKHLHVQE----TKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMK  159 (307)
T ss_dssp             TCCCTTBCCEEEEECS-SSCEEEEECCSSCBHHHHHHTSC----CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCC
T ss_pred             hCCCCCEeeEEEEEEC-CeEEEEEEcCCCCCHHHHHhhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccC
Confidence            5899999999998854 56899999999999999997653    56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC-cceeecccccccccCcccccc---CCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRT---GVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+|||++.++.+||+|||+|+...... ........||+.|+|||++.+   ..++.++|||||||++|||+||+.||..
T Consensus       160 p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~  239 (307)
T 3omv_A          160 SNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSH  239 (307)
T ss_dssp             SSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             HHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCC
Confidence            999999999999999999997654322 223445679999999999864   3589999999999999999999999864


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      .......        .         ..+......+.........++.+.++|.+||+.||++|||+.||++.|+.+-..
T Consensus       240 ~~~~~~~--------~---------~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~  301 (307)
T 3omv_A          240 INNRDQI--------I---------FMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS  301 (307)
T ss_dssp             CCCHHHH--------H---------HHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred             CChHHHH--------H---------HHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcc
Confidence            3321100        0         000000000000111124567789999999999999999999999999877544

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=6.1e-53  Score=335.33  Aligned_cols=210  Identities=23%  Similarity=0.355  Sum_probs=171.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCC--------CCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAP--------QPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR   72 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~--------~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~   72 (239)
                      +|+|||||+++|+|.+++..++|||||++|+|.++++...        ......+++..++.++.|++.||.|||   ++
T Consensus        71 ~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~  147 (299)
T 4asz_A           71 NLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQ  147 (299)
T ss_dssp             TCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             hCCCCCCccEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            5899999999999999999999999999999999997642        112257899999999999999999999   89


Q ss_pred             CeeeccccCcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-C
Q 044155           73 PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-G  150 (239)
Q Consensus        73 ~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g  150 (239)
                      +|+||||||+|||++.++.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||+| |
T Consensus       148 ~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G  227 (299)
T 4asz_A          148 HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYG  227 (299)
T ss_dssp             TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred             CcccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999865433222 2234568999999999999999999999999999999999 8


Q ss_pred             CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      +.||.....                     .++...+..+... ..+...++++.++|.+||+.||++|||++||.+.|+
T Consensus       228 ~~Pf~~~~~---------------------~~~~~~i~~~~~~-~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~  285 (299)
T 4asz_A          228 KQPWYQLSN---------------------NEVIECITQGRVL-QRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQ  285 (299)
T ss_dssp             CCTTTTSCH---------------------HHHHHHHHHTCCC-CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCCCCCCH---------------------HHHHHHHHcCCCC-CCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence            888864321                     1222222222111 112345678999999999999999999999999999


Q ss_pred             HHHHh
Q 044155          231 QIYRS  235 (239)
Q Consensus       231 ~l~~~  235 (239)
                      ++.+.
T Consensus       286 ~~~~~  290 (299)
T 4asz_A          286 NLAKA  290 (299)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88654

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=3.2e-52  Score=334.58  Aligned_cols=208  Identities=21%  Similarity=0.250  Sum_probs=168.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||++++++.+++..++|||||+||+|.++++..     ..+++..++.++.||+.||+|||   +++|+|||||
T Consensus       106 ~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~-----~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlK  177 (336)
T 4g3f_A          106 GLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQM-----GCLPEDRALYYLGQALEGLEYLH---TRRILHGDVK  177 (336)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCC
T ss_pred             hCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecccC
Confidence            479999999999999999999999999999999999875     57999999999999999999999   9999999999


Q ss_pred             CcceeecCCC-ceeEcccccccccCCCCc----ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           81 TSCILFNEEN-VAKLFDFSLSISIPEGET----HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        81 ~~nil~~~~~-~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |+|||++.++ .+||+|||+++.......    .......||+.|+|||++.+..++.++|||||||++|||++|..||.
T Consensus       178 p~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~  257 (336)
T 4g3f_A          178 ADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWT  257 (336)
T ss_dssp             GGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSST
T ss_pred             HHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCC
Confidence            9999999987 599999999987643221    11234579999999999999999999999999999999999999996


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCC-cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS-SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      ......                     ....+...... ...+...++.+.++|.+||+.||.+|||+.|+++.|...+.
T Consensus       258 ~~~~~~---------------------~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~  316 (336)
T 4g3f_A          258 QYFRGP---------------------LCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQ  316 (336)
T ss_dssp             TTCCSC---------------------CHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCHHH---------------------HHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence            432111                     00111111100 00112456778999999999999999999999999998877


Q ss_pred             hhc
Q 044155          235 SLS  237 (239)
Q Consensus       235 ~~~  237 (239)
                      ++.
T Consensus       317 ~~~  319 (336)
T 4g3f_A          317 EVG  319 (336)
T ss_dssp             HTT
T ss_pred             hhh
Confidence            654

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=8.5e-52  Score=332.87  Aligned_cols=210  Identities=25%  Similarity=0.356  Sum_probs=164.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC----------CCCcCCHHHHHHHHHHHHHHHhHHhhCC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP----------HFEPLLLKHRLKIAMDIVHALAYLHFGF   70 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~   70 (239)
                      +|+|||||+++|+|.+.+..++|||||++|+|.++++.....          ...++++..++.++.|++.||+|||   
T Consensus        99 ~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---  175 (329)
T 4aoj_A           99 MLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---  175 (329)
T ss_dssp             TCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             hCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---
Confidence            589999999999999999999999999999999999865321          1146899999999999999999999   


Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCcccccchhhhhhHHHHHhc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~  149 (239)
                      +++|+||||||+|||++.++.+||+|||+++...... ........||+.|+|||++.+..++.++|||||||++|||+|
T Consensus       176 ~~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt  255 (329)
T 4aoj_A          176 GLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFT  255 (329)
T ss_dssp             HTTCCCSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHT
T ss_pred             cCCeecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHc
Confidence            8999999999999999999999999999998654332 222345678999999999999999999999999999999999


Q ss_pred             -CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          150 -GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       150 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                       |+.||.....                     .+.+..+..+. ....+...++++.+++.+||+.||++|||++||++.
T Consensus       256 ~G~~Pf~~~~~---------------------~~~~~~i~~g~-~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~  313 (329)
T 4aoj_A          256 YGKQPWYQLSN---------------------TEAIDCITQGR-ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHAR  313 (329)
T ss_dssp             TSCCTTCSSCH---------------------HHHHHHHHHTC-CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHH
T ss_pred             CCCCCCCCCCH---------------------HHHHHHHHcCC-CCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence             8889864331                     11122221111 111122456789999999999999999999999999


Q ss_pred             HHHHHHh
Q 044155          229 LRQIYRS  235 (239)
Q Consensus       229 L~~l~~~  235 (239)
                      |+.+.+.
T Consensus       314 L~~l~~~  320 (329)
T 4aoj_A          314 LQALAQA  320 (329)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhhC
Confidence            9988653

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=3.6e-52  Score=332.17  Aligned_cols=207  Identities=18%  Similarity=0.312  Sum_probs=168.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFG   69 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~   69 (239)
                      +|+|||||+++|+|.+.+..++|||||++|+|.+++......           ....+++..+..++.||+.||.|||  
T Consensus        85 ~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH--  162 (308)
T 4gt4_A           85 RLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS--  162 (308)
T ss_dssp             HCCCTTBCCEEEEECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             hCCCCCCCCcceEEEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH--
Confidence            479999999999999999999999999999999999754211           1145889999999999999999999  


Q ss_pred             CCCCeeeccccCcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCcccccchhhhhhHHHHHh
Q 044155           70 FPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        70 ~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~  148 (239)
                       +++|+||||||+|||+++++.+||+|||+++...... ........||+.|+|||++.+..++.++|||||||++|||+
T Consensus       163 -~~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~  241 (308)
T 4gt4_A          163 -SHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVF  241 (308)
T ss_dssp             -HTTCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             -hCCCCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHH
Confidence             8999999999999999999999999999997653322 12234567899999999999999999999999999999999


Q ss_pred             c-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          149 T-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       149 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      | |..||.....                     .++...+..+.. .+.+...++.+.+++.+||+.||++|||+.||++
T Consensus       242 t~g~~Pf~~~~~---------------------~~~~~~i~~~~~-~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~  299 (308)
T 4gt4_A          242 SYGLQPYCGYSN---------------------QDVVEMIRNRQV-LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHS  299 (308)
T ss_dssp             TTTCCTTTTCCH---------------------HHHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             hCCCCCCCCCCH---------------------HHHHHHHHcCCC-CCCcccchHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            8 8888864321                     112222222111 1122356678999999999999999999999999


Q ss_pred             HHHHH
Q 044155          228 KLRQI  232 (239)
Q Consensus       228 ~L~~l  232 (239)
                      .|+..
T Consensus       300 ~L~a~  304 (308)
T 4gt4_A          300 RLRAW  304 (308)
T ss_dssp             HHHTS
T ss_pred             HHHhc
Confidence            99753

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=2.6e-51  Score=324.00  Aligned_cols=195  Identities=19%  Similarity=0.308  Sum_probs=156.1

Q ss_pred             CCCCcccceeeEEEEe----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC--e
Q 044155            1 QMSHNHILKLIGCCLE----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP--I   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~--i   74 (239)
                      +|+|||||+++++|.+    ....++|||||++|+|.+++.+.     ..+++..++.++.||+.||+|||   +++  |
T Consensus        81 ~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~ylH---~~~~~I  152 (290)
T 3fpq_A           81 GLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-----KVMKIKVLRSWCRQILKGLQFLH---TRTPPI  152 (290)
T ss_dssp             TCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---TSSSCC
T ss_pred             hCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCCE
Confidence            5899999999999975    24578999999999999999875     67899999999999999999999   777  9


Q ss_pred             eeccccCcceeecC-CCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCC
Q 044155           75 VFRNFKTSCILFNE-ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        75 ~H~dlk~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      +||||||+|||++. ++.+||+|||+|+.....   ......||+.|+|||++.+ .++.++|||||||++|||+||..|
T Consensus       153 iHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~---~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~P  228 (290)
T 3fpq_A          153 IHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS---FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYP  228 (290)
T ss_dssp             CCCCCCGGGEEESSTTSCEEECCTTGGGGCCTT---SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             EecccChhheeEECCCCCEEEEeCcCCEeCCCC---ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999975 789999999999754332   2345679999999998864 699999999999999999999999


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      |......                    ..+...+.........+...++++.+||.+||+.||++|||++|+++
T Consensus       229 f~~~~~~--------------------~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          229 YSECQNA--------------------AQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             TTTCSSH--------------------HHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCCCcH--------------------HHHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            8543211                    11111111111111112233457899999999999999999999986

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=6e-52  Score=334.44  Aligned_cols=198  Identities=21%  Similarity=0.308  Sum_probs=164.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||++++++.+++..++|||||+||+|.+++.....   ..+++..++.++.||+.||.|||   +++|+|||||
T Consensus        79 ~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~~~i~~~~~---~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlK  152 (350)
T 4b9d_A           79 NMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKG---VLFQEDQILDWFVQICLALKHVH---DRKILHRDIK  152 (350)
T ss_dssp             HCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCC
T ss_pred             HCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCC
Confidence            47999999999999999999999999999999999976543   45789999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.+||+|||+++..... ........||+.|+|||++.+..++.++|||||||++|||++|..||....  
T Consensus       153 p~NILl~~~g~vKl~DFGla~~~~~~-~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~--  229 (350)
T 4b9d_A          153 SQNIFLTKDGTVQLGDFGIARVLNST-VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS--  229 (350)
T ss_dssp             GGGEEECTTCCEEECSTTEESCCCHH-HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS--
T ss_pred             HHHEEECCCCCEEEcccccceeecCC-cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC--
Confidence            99999999999999999999765321 122345679999999999999999999999999999999999999985322  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                         ..+....+....... .....++++.+||.+||+.||.+|||++|+++
T Consensus       230 -------------------~~~~~~~i~~~~~~~-~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          230 -------------------MKNLVLKIISGSFPP-VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             -------------------HHHHHHHHHHTCCCC-CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -------------------HHHHHHHHHcCCCCC-CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                               112222222222211 11245677899999999999999999999986

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=6.7e-51  Score=325.10  Aligned_cols=220  Identities=19%  Similarity=0.323  Sum_probs=164.3

Q ss_pred             CCCCcccceeeEEEEeCC----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC----
Q 044155            1 QMSHNHILKLIGCCLETP----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR----   72 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~----   72 (239)
                      +++|||||+++|++.+.+    ..++||||+++|+|.++++.      ..+++..+.+++.|++.||+|||   ++    
T Consensus        53 ~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~~------~~l~~~~~~~i~~~ia~gl~ylH---~~~~~~  123 (303)
T 3hmm_A           53 MLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR------YTVTVEGMIKLALSTASGLAHLH---MEIVGT  123 (303)
T ss_dssp             TCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHH---CCBCST
T ss_pred             cCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHH---Hhhhhc
Confidence            479999999999998654    46899999999999999986      45889999999999999999999   55    


Q ss_pred             ----CeeeccccCcceeecCCCceeEcccccccccCCCCcc---eeecccccccccCccccccC------Ccccccchhh
Q 044155           73 ----PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH---ITDTVMGTLGYCAPEYMRTG------VFNEKSNVFS  139 (239)
Q Consensus        73 ----~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~s  139 (239)
                          +|+||||||+|||++.++.+||+|||+++........   ......||+.|+|||++.+.      .++.++||||
T Consensus       124 ~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS  203 (303)
T 3hmm_A          124 QGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYA  203 (303)
T ss_dssp             TCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHH
T ss_pred             cCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhh
Confidence                9999999999999999999999999999766433221   22345799999999998754      3678999999


Q ss_pred             hhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCc-----HHHHHHHHHHHHHHhhhcCC
Q 044155          140 FSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSS-----IEKEQQLHASAQVTFECIKD  214 (239)
Q Consensus       140 lG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~li~~cl~~  214 (239)
                      |||++|||+||..|+........   ++....   ..................++     ......+..+.+++.+||+.
T Consensus       204 ~Gvvl~El~tg~~~~~~~~~~~~---p~~~~~---~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~  277 (303)
T 3hmm_A          204 MGLVFWEIARRCSIGGIHEDYQL---PYYDLV---PSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYA  277 (303)
T ss_dssp             HHHHHHHHHHTBCBTTBCCCCCC---TTTTTS---CSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHCCCCCCccccccc---cchhcc---cccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHccc
Confidence            99999999999888754432211   111100   00111111221122211111     11124567889999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHh
Q 044155          215 SPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       215 dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ||++|||+.||++.|+++.++
T Consensus       278 dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          278 NGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             SGGGSCCHHHHHHHHHHHHHC
T ss_pred             CHhHCcCHHHHHHHHHHHHHH
Confidence            999999999999999998764

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=5.4e-51  Score=328.40  Aligned_cols=196  Identities=16%  Similarity=0.244  Sum_probs=162.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||+++++|.+++..|+|||||++|+|.+++..      ..+++..++.++.||+.||+|||   +++|+|||||
T Consensus       127 ~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~------~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlK  197 (346)
T 4fih_A          127 DYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH------TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIK  197 (346)
T ss_dssp             HCCCTTBCCEEEEEEETTEEEEEECCCTTEEHHHHHHH------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCC
Confidence            37999999999999999999999999999999999976      45899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|||||||++|||++|..||..... 
T Consensus       198 p~NILl~~~g~vKl~DFGla~~~~~~~-~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-  275 (346)
T 4fih_A          198 SDSILLTHDGRVKLSDFGFCAQVSKEV-PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-  275 (346)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSSS-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-
T ss_pred             HHHEEECCCCCEEEecCcCceecCCCC-CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-
Confidence            999999999999999999998764322 234467899999999999999999999999999999999999999853221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCC-CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          .+....+..... ........++++++||.+||+.||++|||++|+++
T Consensus       276 --------------------~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          276 --------------------LKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK  323 (346)
T ss_dssp             --------------------HHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             --------------------HHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                                111111111110 01111245678899999999999999999999986

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=4.5e-51  Score=324.35  Aligned_cols=195  Identities=17%  Similarity=0.242  Sum_probs=164.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||++++++.+.+..++|||||+||+|.+++.+.     ..+++..++.++.||+.||.|||   +++|+|||||
T Consensus        88 ~l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~~~i~~~-----~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlK  159 (311)
T 4aw0_A           88 RLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI-----GSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLK  159 (311)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCC
Confidence            579999999999999999999999999999999999875     57999999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCC-CcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEG-ETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+|||++.++.+||+|||+++..... .........||+.|+|||++.+..++.++|||||||++|+|++|..||.... 
T Consensus       160 PeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-  238 (311)
T 4aw0_A          160 PENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN-  238 (311)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS-
T ss_pred             HHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-
Confidence            99999999999999999999876432 2233456789999999999999999999999999999999999999985321 


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                                          ..+....+.......  +...++++++||.+||+.||++|||++|++
T Consensus       239 --------------------~~~~~~~i~~~~~~~--p~~~s~~~~dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          239 --------------------EGLIFAKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             --------------------HHHHHHHHHHTCCCC--CTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred             --------------------HHHHHHHHHcCCCCC--CcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence                                112222222222221  123456789999999999999999999864

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.5e-50  Score=328.08  Aligned_cols=210  Identities=21%  Similarity=0.358  Sum_probs=167.7

Q ss_pred             CCcccceeeEEEEeC-CCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhCC
Q 044155            3 SHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFGF   70 (239)
Q Consensus         3 ~H~niv~l~~~~~~~-~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~   70 (239)
                      +|||||+++|+|.+. +..++|||||++|+|.++++.....           ....+++..+..++.||+.||.|||   
T Consensus       126 hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---  202 (353)
T 4ase_A          126 HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---  202 (353)
T ss_dssp             CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---
T ss_pred             CCCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---
Confidence            459999999999764 5689999999999999999864220           1145889999999999999999999   


Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~  149 (239)
                      +++|+||||||+|||++.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||+|
T Consensus       203 ~~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t  282 (353)
T 4ase_A          203 SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS  282 (353)
T ss_dssp             HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTT
T ss_pred             hCCeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHh
Confidence            89999999999999999999999999999986644332 23445678999999999999999999999999999999998


Q ss_pred             -CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          150 -GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       150 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                       |..||.......                     .+...+........+...++++.++|.+||+.||++|||+.||++.
T Consensus       283 ~G~~Pf~~~~~~~---------------------~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~  341 (353)
T 4ase_A          283 LGASPYPGVKIDE---------------------EFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  341 (353)
T ss_dssp             TSCCSSTTCCCSH---------------------HHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHH---------------------HHHHHHHcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence             889986432111                     0111111111111123456788999999999999999999999999


Q ss_pred             HHHHHHhh
Q 044155          229 LRQIYRSL  236 (239)
Q Consensus       229 L~~l~~~~  236 (239)
                      |.++++.-
T Consensus       342 L~~llq~~  349 (353)
T 4ase_A          342 LGNLLQAN  349 (353)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99987653

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=2.9e-50  Score=319.55  Aligned_cols=195  Identities=24%  Similarity=0.296  Sum_probs=160.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||++++++.+++..++|||||+||+|.+++.+.     ..+++..++.++.|++.||+|||   +++|+|||||
T Consensus        82 ~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~-----~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlK  153 (304)
T 3ubd_A           82 EVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE-----VMFTEEDVKFYLAELALALDHLH---SLGIIYRDLK  153 (304)
T ss_dssp             CCCCTTEECEEEEEEETTEEEEEECCCTTCEEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCC
T ss_pred             HCCCCCCCeEEEEEEECCEEEEEEEcCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCC
Confidence            579999999999999999999999999999999999875     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|||||||++|||++|..||....  
T Consensus       154 p~NILl~~~g~vKl~DFGla~~~~~~~-~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~--  230 (304)
T 3ubd_A          154 PENILLDEEGHIKLTDFGLSKESIDHE-KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKD--  230 (304)
T ss_dssp             GGGEEECTTSCEEEESSEEEEC------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS--
T ss_pred             HHHeEEcCCCCEEecccccceeccCCC-ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcC--
Confidence            999999999999999999997653322 22345679999999999999999999999999999999999999986322  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH-----HHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM-----VDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~-----~ell~  227 (239)
                                         ..+....+.......  +...++++.+||.+||+.||++|||+     +|+++
T Consensus       231 -------------------~~~~~~~i~~~~~~~--p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~  281 (304)
T 3ubd_A          231 -------------------RKETMTMILKAKLGM--PQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKR  281 (304)
T ss_dssp             -------------------HHHHHHHHHHCCCCC--CTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred             -------------------HHHHHHHHHcCCCCC--CCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence                               112222222222211  12456778999999999999999985     56664

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=7e-50  Score=329.34  Aligned_cols=196  Identities=16%  Similarity=0.244  Sum_probs=162.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||+++++|.+++..|+|||||+||+|.++++.      ..+++..++.++.||+.||+|||   +++|+|||||
T Consensus       204 ~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~~~i~~------~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiK  274 (423)
T 4fie_A          204 DYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH------TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIK  274 (423)
T ss_dssp             HCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHH------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCCCceEEEEEECCEEEEEEeCCCCCcHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCC
Confidence            37999999999999999999999999999999999975      45899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|||||||++|||++|..||..... 
T Consensus       275 p~NILl~~~g~vKl~DFGla~~~~~~~-~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-  352 (423)
T 4fie_A          275 SDSILLTHDGRVKLSDFGFCAQVSKEV-PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-  352 (423)
T ss_dssp             TTTEEECTTCCEEECCCTTCEECCSSC-CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-
T ss_pred             HHHEEEcCCCCEEEecCccceECCCCC-ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-
Confidence            999999999999999999998764322 234567899999999999999999999999999999999999999853221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCC-CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          .+....+..... ........++.+++||.+||..||.+|||++|+++
T Consensus       353 --------------------~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          353 --------------------LKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK  400 (423)
T ss_dssp             --------------------HHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             --------------------HHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                                111111111100 00111245677899999999999999999999986

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1.1e-49  Score=312.14  Aligned_cols=193  Identities=23%  Similarity=0.320  Sum_probs=151.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.+.+..++||||+ +|+|.+++.+.     ..+++..++.++.||+.||+|||   +++|+|||||
T Consensus        69 ~l~HpnIv~~~~~~~~~~~~~ivmEy~-~g~L~~~l~~~-----~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiK  139 (275)
T 3hyh_A           69 LLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDYIVQR-----DKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLK  139 (275)
T ss_dssp             HCCCTTBCCEEEEEECSSEEEEEEECC-CEEHHHHHHHS-----CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred             HCCCCCCCeEEEEEEECCEEEEEEeCC-CCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCC
Confidence            378999999999999999999999999 58999999876     57999999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+|||++.++.+||+|||+++......  ......||+.|+|||++.+..+ +.++||||+||++|+|++|+.||.... 
T Consensus       140 P~NILl~~~~~vkl~DFGla~~~~~~~--~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~-  216 (275)
T 3hyh_A          140 PENLLLDEHLNVKIADFGLSNIMTDGN--FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES-  216 (275)
T ss_dssp             TTTEEECTTCCEEECCSSCC-----------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-
T ss_pred             hHHeEECCCCCEEEeecCCCeecCCCC--ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC-
Confidence            999999999999999999997653322  2345679999999999998775 579999999999999999999985321 


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          .......+.......  +...+++++++|.+||+.||++|||++|+++
T Consensus       217 --------------------~~~~~~~i~~~~~~~--p~~~s~~~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          217 --------------------IPVLFKNISNGVYTL--PKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             --------------------HHHHHHHHHHTCCCC--CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             --------------------HHHHHHHHHcCCCCC--CCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence                                111122222222111  1234577899999999999999999999987

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.3e-47  Score=305.07  Aligned_cols=198  Identities=22%  Similarity=0.326  Sum_probs=148.6

Q ss_pred             CCCCcccceeeEEEEeCCC------------ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhh
Q 044155            1 QMSHNHILKLIGCCLETPI------------PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHF   68 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~------------~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~   68 (239)
                      +|+|||||++++++.+.+.            .++|||||++|+|.+++......  ...+...++.++.||+.||+||| 
T Consensus        59 ~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~--~~~~~~~~~~i~~qi~~al~ylH-  135 (299)
T 4g31_A           59 KLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTI--EERERSVCLHIFLQIAEAVEFLH-  135 (299)
T ss_dssp             TCCCTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCSG--GGSCHHHHHHHHHHHHHHHHHHH-
T ss_pred             hCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHHHHHH-
Confidence            5899999999999976543            58999999999999999865321  34567778899999999999999 


Q ss_pred             CCCCCeeeccccCcceeecCCCceeEcccccccccCCCCc-----------ceeecccccccccCccccccCCcccccch
Q 044155           69 GFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-----------HITDTVMGTLGYCAPEYMRTGVFNEKSNV  137 (239)
Q Consensus        69 ~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  137 (239)
                        +++|+||||||+|||++.++.+||+|||+++.......           .......||+.|+|||++.+..++.++||
T Consensus       136 --~~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~Di  213 (299)
T 4g31_A          136 --SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDI  213 (299)
T ss_dssp             --HTTCCCCCCCGGGEEECTTCCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHH
T ss_pred             --HCcCccccCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHH
Confidence              89999999999999999999999999999986643211           11234579999999999999999999999


Q ss_pred             hhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCC
Q 044155          138 FSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPA  217 (239)
Q Consensus       138 ~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~  217 (239)
                      |||||++|||++   ||....                    .............. +......++...++|.+||+.||.
T Consensus       214 wSlGvilyell~---Pf~~~~--------------------~~~~~~~~~~~~~~-p~~~~~~~~~~~~li~~~L~~dP~  269 (299)
T 4g31_A          214 FSLGLILFELLY---PFSTQM--------------------ERVRTLTDVRNLKF-PPLFTQKYPCEYVMVQDMLSPSPM  269 (299)
T ss_dssp             HHHHHHHHHHHS---CCSSHH--------------------HHHHHHHHHHTTCC-CHHHHHHCHHHHHHHHHHTCSSGG
T ss_pred             HHHHHHHHHHcc---CCCCcc--------------------HHHHHHHHHhcCCC-CCCCcccCHHHHHHHHHHcCCChh
Confidence            999999999996   553110                    00011111111222 233345556778999999999999


Q ss_pred             CCCCHHHHHH
Q 044155          218 DRPSMVDVAK  227 (239)
Q Consensus       218 ~Rps~~ell~  227 (239)
                      +|||+.|+++
T Consensus       270 ~Rps~~eil~  279 (299)
T 4g31_A          270 ERPEAINIIE  279 (299)
T ss_dssp             GSCCHHHHHT
T ss_pred             HCcCHHHHhc
Confidence            9999999987

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=2.2e-45  Score=299.47  Aligned_cols=144  Identities=19%  Similarity=0.305  Sum_probs=124.8

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +|||||++++++.+.+..++||||+++|+|.+++        ..+++.+++.++.|++.||+|||   +++|+||||||+
T Consensus        78 ~h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~~~--------~~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPe  146 (361)
T 4f9c_A           78 GQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDIL--------NSLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPS  146 (361)
T ss_dssp             SBTTBCCCSEEEEETTEEEEEEECCCCCCHHHHH--------TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGG
T ss_pred             CCCCCceEEEEEEECCEEEEEEeCCCcccHHHHH--------cCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHH
Confidence            6999999999999999999999999999999998        34789999999999999999999   899999999999


Q ss_pred             ceeecCC-CceeEcccccccccCCCCc---------------------------ceeecccccccccCccccccC-Cccc
Q 044155           83 CILFNEE-NVAKLFDFSLSISIPEGET---------------------------HITDTVMGTLGYCAPEYMRTG-VFNE  133 (239)
Q Consensus        83 nil~~~~-~~~~l~dfg~~~~~~~~~~---------------------------~~~~~~~~~~~y~aPE~~~~~-~~~~  133 (239)
                      |||++.+ +.+||+|||+|+.......                           .......||+.|+|||++.+. .++.
T Consensus       147 NiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~  226 (361)
T 4f9c_A          147 NFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTT  226 (361)
T ss_dssp             GEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCT
T ss_pred             HeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCC
Confidence            9999877 7999999999975432211                           112345699999999999875 4889


Q ss_pred             ccchhhhhhHHHHHhcCCCCcccc
Q 044155          134 KSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus       134 ~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      ++||||+||++|+|++|+.||...
T Consensus       227 ~~DiWSlG~il~ell~G~~Pf~~~  250 (361)
T 4f9c_A          227 AIDMWSAGVIFLSLLSGRYPFYKA  250 (361)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             ccchhhhHHHHHHHHHCCCCCCCC
Confidence            999999999999999999998543

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=7.1e-45  Score=312.61  Aligned_cols=195  Identities=18%  Similarity=0.232  Sum_probs=160.7

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++|||||+++++|.+....++||||++||+|.+++...     ..+++..++.++.||+.||.|||   +++|+||||||
T Consensus       249 ~~HP~IV~l~~~f~~~~~lylVmEy~~GGdL~~~l~~~-----~~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKP  320 (689)
T 3v5w_A          249 GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH-----GVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKP  320 (689)
T ss_dssp             SCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSG
T ss_pred             CCCCCEeEEEEEEEECCEEEEEEecCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCch
Confidence            68999999999999999999999999999999999875     56999999999999999999999   99999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      +|||++.+|.+||+|||++.......   .....||+.|+|||++.. ..++.++|+|||||++|||++|..||......
T Consensus       321 eNILld~~G~vKL~DFGlA~~~~~~~---~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~  397 (689)
T 3v5w_A          321 ANILLDEHGHVRISDLGLACDFSKKK---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK  397 (689)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSCC---CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC
T ss_pred             HHeEEeCCCCEEecccceeeecCCCC---CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence            99999999999999999998764332   345689999999999974 57999999999999999999999998642210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-----MVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~ell~  227 (239)
                                        ...++...........  +...++++++||.+||..||.+|++     ++|+++
T Consensus       398 ------------------~~~~i~~~i~~~~~~~--p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~  449 (689)
T 3v5w_A          398 ------------------DKHEIDRMTLTMAVEL--PDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  449 (689)
T ss_dssp             ------------------CHHHHHHHHHHCCCCC--CTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred             ------------------HHHHHHHhhcCCCCCC--CccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence                              0111122222222111  1245677899999999999999998     677764

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=6e-45  Score=299.92  Aligned_cols=217  Identities=18%  Similarity=0.227  Sum_probs=156.9

Q ss_pred             CCCCcccceeeEEEEeC------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +|+|||||++++++...      +..++|||||+ |+|.+++...     ..+++..++.++.||+.||.|||   +++|
T Consensus       109 ~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~-g~L~~~i~~~-----~~l~~~~~~~~~~qil~al~ylH---~~~i  179 (398)
T 4b99_A          109 HFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME-SDLHQIIHSS-----QPLTLEHVRYFLYQLLRGLKYMH---SAQV  179 (398)
T ss_dssp             HCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCS-EEHHHHHTSS-----SCCCHHHHHHHHHHHHHHHHHHH---HTTC
T ss_pred             hcCCCCcceEeeeeecccccccCCEEEEEEeCCC-CCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCcC
Confidence            37899999999998643      56799999996 7899999765     67999999999999999999999   8999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCC---cceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcC
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGE---THITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTG  150 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g  150 (239)
                      +||||||+|||++.++.+||+|||+++......   ........||+.|+|||++.+. .++.++||||+||++|||++|
T Consensus       180 iHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G  259 (398)
T 4b99_A          180 IHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLAR  259 (398)
T ss_dssp             BCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHC
Confidence            999999999999999999999999997653321   1233467899999999998875 468999999999999999999


Q ss_pred             CCCcccccccccccccch------hhhhhhhhccchhhhhhhhhhcCCCcHH---HHHHHHHHHHHHhhhcCCCCCCCCC
Q 044155          151 WDVSDLVKDVHDLVCPFS------EYLKNCFEDNRFTEIVDHIVVEDVSSIE---KEQQLHASAQVTFECIKDSPADRPS  221 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~cl~~dp~~Rps  221 (239)
                      ..||..............      .................. .........   ....++++.+||.+||..||.+|||
T Consensus       260 ~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t  338 (398)
T 4b99_A          260 RQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQS-LPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARIS  338 (398)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHS-SCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCC
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhc-CCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcC
Confidence            999975432211110000      000000000000000000 000000000   0134567899999999999999999


Q ss_pred             HHHHHH
Q 044155          222 MVDVAK  227 (239)
Q Consensus       222 ~~ell~  227 (239)
                      ++|+++
T Consensus       339 a~e~L~  344 (398)
T 4b99_A          339 AAAALR  344 (398)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            999986

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=4.1e-44  Score=307.84  Aligned_cols=197  Identities=16%  Similarity=0.259  Sum_probs=162.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||+++++|.+.+..++|||||+||+|.+++....    ..+++..+..++.||+.||.|||   +++|+|||||
T Consensus       210 ~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L~~~i~~~~----~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlK  282 (573)
T 3uto_A          210 VLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEH----NKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLK  282 (573)
T ss_dssp             HTCCTTBCCEEEEEECSSEEEEEEECCCCCBHHHHHTCTT----SCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred             hCCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCC
Confidence            3799999999999999999999999999999999996543    46899999999999999999999   8999999999


Q ss_pred             CcceeecCC--CceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNEE--NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~--~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+|||++.+  +.+||+|||+++......  ......||+.|+|||++.+..++.++|||||||++|+|++|..||....
T Consensus       283 p~Nill~~~~~~~vKl~DFG~a~~~~~~~--~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~  360 (573)
T 3uto_A          283 PENIMFTTKRSNELKLIDFGLTAHLDPKQ--SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEN  360 (573)
T ss_dssp             GGGEEESSSSCCCEEECCCSSCEECCTTS--EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS
T ss_pred             hhhccccCCCCCCEEEeeccceeEccCCC--ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC
Confidence            999999865  789999999998764433  2345679999999999999999999999999999999999999986432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                     .+....+.....  ........++.+++||.+||..||.+|||+.|+++
T Consensus       361 ~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          361 D---------------------DETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             H---------------------HHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             H---------------------HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1                     111111111111  11112245677899999999999999999999986

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=2.6e-43  Score=284.39  Aligned_cols=223  Identities=31%  Similarity=0.526  Sum_probs=176.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC---Ceeec
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR---PIVFR   77 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~---~i~H~   77 (239)
                      +++||||+++++++.+....++||||+++++|.+++...... ...+++..+..++.|++.||.|||   +.   +++|+
T Consensus        83 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~ivH~  158 (326)
T 3uim_A           83 MAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPES-QPPLDWPKRQRIALGSARGLAYLH---DHCDPKIIHR  158 (326)
T ss_dssp             TCCCTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCSTT-CCCCCHHHHHHHHHHHHHHHHHHH---HSSSSCEECC
T ss_pred             hccCCCccceEEEEecCCceEEEEEeccCCCHHHHHHhcccc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCeEeC
Confidence            478999999999999999999999999999999999875432 145899999999999999999999   67   99999


Q ss_pred             cccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           78 NFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        78 dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      ||||+||+++.++.++|+|||++...............||+.|+|||++.+..++.++||||||+++|+|++|..||+..
T Consensus       159 Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  238 (326)
T 3uim_A          159 DVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLA  238 (326)
T ss_dssp             CCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHH
T ss_pred             CCchhhEEECCCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCccccc
Confidence            99999999999999999999999876544444445556899999999998888999999999999999999999999744


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      ............+..............+......    .....+..+.+++.+||+.||.+|||+.|+++.|+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~  308 (326)
T 3uim_A          239 RLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGN----YKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG  308 (326)
T ss_dssp             HHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTS----CCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred             ccccccchhHHHHHHHHhhchhhhhhcChhhccc----cCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence            3322222222333333333323222222222222    224667889999999999999999999999999975

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=2.7e-43  Score=283.97  Aligned_cols=222  Identities=23%  Similarity=0.309  Sum_probs=168.2

Q ss_pred             CCCCcccceeeEEEEeCCC----ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC----
Q 044155            1 QMSHNHILKLIGCCLETPI----PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR----   72 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~----~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~----   72 (239)
                      +++||||+++++++.+...    .++||||+++|+|.++++.      ..+++..+..++.|++.||+|||   +.    
T Consensus        74 ~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~qi~~al~~LH---~~~~~l  144 (322)
T 3soc_A           74 GMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKA------NVVSWNELCHIAETMARGLAYLH---EDIPGL  144 (322)
T ss_dssp             TCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHT---CCEEEE
T ss_pred             cCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH---hhcccc
Confidence            4789999999999987654    5899999999999999976      35889999999999999999999   88    


Q ss_pred             ------CeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccC-----Ccccccchhhh
Q 044155           73 ------PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTG-----VFNEKSNVFSF  140 (239)
Q Consensus        73 ------~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Di~sl  140 (239)
                            +++|+||||+||+++.++.+||+|||++........ .......||+.|+|||++.+.     .++.++|||||
T Consensus       145 ~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diwsl  224 (322)
T 3soc_A          145 KDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAM  224 (322)
T ss_dssp             TTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred             ccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHH
Confidence                  999999999999999999999999999976643322 122345689999999999863     46678999999


Q ss_pred             hhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCc-----HHHHHHHHHHHHHHhhhcCCC
Q 044155          141 SVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSS-----IEKEQQLHASAQVTFECIKDS  215 (239)
Q Consensus       141 G~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~li~~cl~~d  215 (239)
                      |+++|+|++|..||....+...  .++......   .................+     ......++.+.++|.+||+.|
T Consensus       225 G~il~el~tg~~pf~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~d  299 (322)
T 3soc_A          225 GLVLWELASRCTAADGPVDEYM--LPFEEEIGQ---HPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHD  299 (322)
T ss_dssp             HHHHHHHHTTBTTSSSCCCCCC--CTTHHHHCS---SCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHhCCCCCCCCcchhc--cchhhhhcc---CCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCC
Confidence            9999999999999875433221  111111111   111111111111111111     011245677999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHhh
Q 044155          216 PADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       216 p~~Rps~~ell~~L~~l~~~~  236 (239)
                      |.+|||+.|+++.|+++.+..
T Consensus       300 P~~Rps~~ell~~L~~l~~~~  320 (322)
T 3soc_A          300 AEARLSAGCVGERITQMQRLT  320 (322)
T ss_dssp             GGGSCCHHHHHHHHHHHHHHC
T ss_pred             hhhCcCHHHHHHHHHHHHHHh
Confidence            999999999999999987654

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=1.9e-42  Score=278.84  Aligned_cols=225  Identities=32%  Similarity=0.517  Sum_probs=173.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++...... ...+++..+..++.|++.||.|||   +++++|+|||
T Consensus        91 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlk  166 (321)
T 2qkw_B           91 FCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLP-TMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVK  166 (321)
T ss_dssp             SCCCTTBCCEEEECCCTTCCEEEEECCTTCBTGGGSSSSCCC-SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred             hCCCCCEeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhccCCC-ccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCC
Confidence            478999999999999999999999999999999999765321 135889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||++....... ........|++.|+|||++.+..++.++||||||+++|+|++|+.||.....
T Consensus       167 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~  246 (321)
T 2qkw_B          167 SINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLP  246 (321)
T ss_dssp             STTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSS
T ss_pred             HHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCc
Confidence            999999999999999999987643221 1223345689999999999888999999999999999999999999865332


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      .....  ...+..............+    ...........+..+.+++.+||+.||.+|||+.|+++.|+.+.+.
T Consensus       247 ~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~  316 (321)
T 2qkw_B          247 REMVN--LAEWAVESHNNGQLEQIVD----PNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL  316 (321)
T ss_dssp             SSCCC--HHHHTHHHHTTTCCCSSSS----SSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             HHHHH--HHHHhhhccccccHHHhcC----hhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence            21111  1111111111111111111    1111122346778899999999999999999999999999998753

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=7.1e-43  Score=280.01  Aligned_cols=209  Identities=27%  Similarity=0.385  Sum_probs=158.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC--eeecc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP--IVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~--i~H~d   78 (239)
                      +++||||+++++++.+....++||||+++++|.+++......  ..++...+..++.|++.||+|||   +.+  ++|+|
T Consensus        90 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~D  164 (309)
T 3p86_A           90 RLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAR--EQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRN  164 (309)
T ss_dssp             HCCCTTBCCEEEEECSTTCCEEEEECCTTCBHHHHHHSTTHH--HHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTT
T ss_pred             hCCCCCEeeEEEEEEECCceEEEEecCCCCcHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCC
Confidence            378999999999999999999999999999999999865211  24889999999999999999999   889  99999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |||+||+++.++.+||+|||++...... ........|++.|+|||++.+..++.++||||||+++|+|++|..||....
T Consensus       165 ikp~NIll~~~~~~kL~Dfg~a~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~  243 (309)
T 3p86_A          165 LKSPNLLVDKKYTVKVCDFGLSRLKAST-FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLN  243 (309)
T ss_dssp             CCGGGEEECTTCCEEECCCC------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSC
T ss_pred             CChhhEEEeCCCcEEECCCCCCcccccc-ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999998654322 122335568999999999999999999999999999999999999986432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      ..                     +..............+...++.+.++|.+||+.||.+|||+.++++.|+.+.++.
T Consensus       244 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~  300 (309)
T 3p86_A          244 PA---------------------QVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA  300 (309)
T ss_dssp             HH---------------------HHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred             HH---------------------HHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence            10                     1111110011111111244567899999999999999999999999999988654

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.9e-42  Score=277.55  Aligned_cols=209  Identities=24%  Similarity=0.326  Sum_probs=166.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+++..++||||+++++|.+++....    ..+++..+..++.|++.||+|||   +.+++|+|||
T Consensus        63 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlk  135 (310)
T 3s95_A           63 CLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMD----SQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLN  135 (310)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHCC----TTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hCCCcCcccEEEEEecCCeeEEEEEecCCCcHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCC
Confidence            4799999999999999999999999999999999998743    56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcce-------------eecccccccccCccccccCCcccccchhhhhhHHHHH
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHI-------------TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFEL  147 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~  147 (239)
                      |+||+++.++.+||+|||++..........             .....||+.|+|||++.+..++.++||||||+++|+|
T Consensus       136 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el  215 (310)
T 3s95_A          136 SHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEI  215 (310)
T ss_dssp             TTSEEECTTSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             cCeEEECCCCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999987653322111             1145689999999999999999999999999999999


Q ss_pred             hcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          148 LTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       148 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ++|..|+............            ...........        ...++.+.+++.+||+.||.+|||+.++++
T Consensus       216 ~~g~~~~~~~~~~~~~~~~------------~~~~~~~~~~~--------~~~~~~l~~li~~~l~~dP~~Rps~~~l~~  275 (310)
T 3s95_A          216 IGRVNADPDYLPRTMDFGL------------NVRGFLDRYCP--------PNCPPSFFPITVRCCDLDPEKRPSFVKLEH  275 (310)
T ss_dssp             HHTCCSSTTTSCBCTTSSB------------CHHHHHHHTCC--------TTCCTTHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             hcCCCCCcchhhhHHHHhh------------hhhccccccCC--------CCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            9999887543221111100            00001110000        123456889999999999999999999999


Q ss_pred             HHHHHHHhh
Q 044155          228 KLRQIYRSL  236 (239)
Q Consensus       228 ~L~~l~~~~  236 (239)
                      .|+++...+
T Consensus       276 ~L~~l~~~~  284 (310)
T 3s95_A          276 WLETLRMHL  284 (310)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999987664

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=8e-43  Score=286.98  Aligned_cols=206  Identities=24%  Similarity=0.347  Sum_probs=165.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++|+|.++++...    ..++...+..++.|++.||+|||   +++++|||||
T Consensus       168 ~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlk  240 (377)
T 3cbl_A          168 QYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEG----ARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLA  240 (377)
T ss_dssp             TCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHG----GGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hCCCCCEEEEEEEEecCCCcEEEEEcCCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccC
Confidence            4789999999999999999999999999999999997642    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcce-eecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHI-TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.+||+|||++.......... .....+++.|+|||.+....++.++||||||+++|||++ |..||....
T Consensus       241 p~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~  320 (377)
T 3cbl_A          241 ARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS  320 (377)
T ss_dssp             GGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC
T ss_pred             HHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            999999999999999999987643322111 122345778999999998889999999999999999998 888876432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ..                     +....... ......+...++.+.++|.+||+.||.+|||++++++.|+++.+.
T Consensus       321 ~~---------------------~~~~~~~~-~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~  375 (377)
T 3cbl_A          321 NQ---------------------QTREFVEK-GGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR  375 (377)
T ss_dssp             HH---------------------HHHHHHHT-TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HH---------------------HHHHHHHc-CCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence            10                     01101101 111111123456789999999999999999999999999998765

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=2.2e-42  Score=275.72  Aligned_cols=196  Identities=18%  Similarity=0.235  Sum_probs=159.3

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++..++..++||||+++++|.+++..      ..++...+..++.|++.||.|||   +++++|+||||
T Consensus        74 l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp  144 (297)
T 3fxz_A           74 NKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE------TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKS  144 (297)
T ss_dssp             CCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHH------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred             CCCCCCCeEeEEEEECCEEEEEEECCCCCCHHHHHhh------cCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCH
Confidence            6899999999999999999999999999999999976      35889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.+||+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||.......
T Consensus       145 ~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~  223 (297)
T 3fxz_A          145 DNILLGMDGSVKLTDFGFCAQITPEQ-SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR  223 (297)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSTT-CCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred             HHEEECCCCCEEEeeCCCceecCCcc-cccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            99999999999999999987654322 22345578999999999999999999999999999999999999985432110


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                    .............+...+..+.+++.+||+.||.+|||++|+++
T Consensus       224 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          224 AL--------------------YLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             HH--------------------HHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             HH--------------------HHHHhCCCCCCCCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            00                    00000000011111245567899999999999999999999986

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.1e-42  Score=273.53  Aligned_cols=206  Identities=23%  Similarity=0.405  Sum_probs=166.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        61 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dik  133 (269)
T 4hcu_A           61 KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQR----GLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLA  133 (269)
T ss_dssp             TCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTTT----TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCCEeeEEEEEecCCceEEEEEeCCCCcHHHHHHhcC----cccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcc
Confidence            5789999999999999999999999999999999997643    45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++...............+++.|+|||.+.+..++.++||||||+++|+|++ |..||.....
T Consensus       134 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~  213 (269)
T 4hcu_A          134 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN  213 (269)
T ss_dssp             GGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred             hheEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH
Confidence            999999999999999999987654332222334456778999999998899999999999999999999 8888753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                                           .+........ .....+...+..+.+++.+||+.||.+|||+.++++.|+++.++
T Consensus       214 ---------------------~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          214 ---------------------SEVVEDISTG-FRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             ---------------------HHHHHHHHTT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ---------------------HHHHHHHhcC-ccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence                                 1111111111 00111123356789999999999999999999999999998763

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=3.2e-42  Score=282.69  Aligned_cols=210  Identities=20%  Similarity=0.349  Sum_probs=167.0

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +||||+++++++.+.+..++||||+++|+|.+++......           ....++...+..++.|++.||.|||   +
T Consensus       145 ~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~  221 (370)
T 2psq_A          145 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---S  221 (370)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             CCCCEeeEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---h
Confidence            7999999999999999999999999999999999875321           1135789999999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-  149 (239)
                      ++++||||||+||+++.++.+||+|||++........ .......+++.|+|||++.+..++.++||||||+++|||++ 
T Consensus       222 ~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~  301 (370)
T 2psq_A          222 QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTL  301 (370)
T ss_dssp             TTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999876543221 12233456788999999998899999999999999999999 


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||.....                     .+......... ....+...+..+.++|.+||+.||.+|||+.|+++.|
T Consensus       302 g~~p~~~~~~---------------------~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L  359 (370)
T 2psq_A          302 GGSPYPGIPV---------------------EELFKLLKEGH-RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  359 (370)
T ss_dssp             SCCSSTTCCG---------------------GGHHHHHHTTC-CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCCCCH---------------------HHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            8888854321                     01111111110 0011123456789999999999999999999999999


Q ss_pred             HHHHHhhc
Q 044155          230 RQIYRSLS  237 (239)
Q Consensus       230 ~~l~~~~~  237 (239)
                      +++.....
T Consensus       360 ~~il~~~~  367 (370)
T 2psq_A          360 DRILTLTT  367 (370)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99886543

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.3e-42  Score=278.95  Aligned_cols=207  Identities=21%  Similarity=0.302  Sum_probs=165.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+++..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus       106 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlk  178 (325)
T 3kul_A          106 QFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHD----GQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLA  178 (325)
T ss_dssp             TCCCTTBCCEEEEECGGGCCEEEEECCTTCBHHHHHHTTT----TCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hCCCCCCCcEEEEEEeCCccEEEeeCCCCCcHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCC
Confidence            4789999999999999999999999999999999997643    46899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++........  .......+|+.|+|||++.+..++.++||||||+++|+|++ |..||...
T Consensus       179 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~  258 (325)
T 3kul_A          179 ARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM  258 (325)
T ss_dssp             GGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred             cceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccC
Confidence            9999999999999999999976643321  12223345778999999998889999999999999999999 98887543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      ..                     .+........ .....+...+..+.+++.+||..||.+|||+.++++.|+.+....
T Consensus       259 ~~---------------------~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~  315 (325)
T 3kul_A          259 TN---------------------RDVISSVEEG-YRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSP  315 (325)
T ss_dssp             CH---------------------HHHHHHHHTT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSC
T ss_pred             CH---------------------HHHHHHHHcC-CCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCc
Confidence            21                     1111111111 111111245567899999999999999999999999999987653

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=8.7e-43  Score=282.38  Aligned_cols=229  Identities=16%  Similarity=0.232  Sum_probs=165.1

Q ss_pred             CCCcccceeeEEEEe-----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC----
Q 044155            2 MSHNHILKLIGCCLE-----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR----   72 (239)
Q Consensus         2 l~H~niv~l~~~~~~-----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~----   72 (239)
                      ++||||+++++.+..     ....++||||+++|+|.+++...      ..++..+..++.|++.||.|||   +.    
T Consensus        64 ~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~------~~~~~~~~~i~~qi~~~L~~LH---~~~~~~  134 (336)
T 3g2f_A           64 MEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLH------TSDWVSSCRLAHSVTRGLAYLH---TELPRG  134 (336)
T ss_dssp             CCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHH---CCBCCG
T ss_pred             ccCcchhhheecccccccCCCceEEEEEecCCCCcHHHHHhhc------ccchhHHHHHHHHHHHHHHHHH---hhhccc
Confidence            689999999986653     22468999999999999999764      4578889999999999999999   88    


Q ss_pred             -----CeeeccccCcceeecCCCceeEcccccccccCCCC-------cceeecccccccccCcccccc-------CCccc
Q 044155           73 -----PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-------THITDTVMGTLGYCAPEYMRT-------GVFNE  133 (239)
Q Consensus        73 -----~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~-------~~~~~  133 (239)
                           +++|+||||+||+++.++.+||+|||++.......       ........||+.|+|||++.+       ..++.
T Consensus       135 ~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~  214 (336)
T 3g2f_A          135 DHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALK  214 (336)
T ss_dssp             GGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHH
T ss_pred             cccccceeecccccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCccccccccccc
Confidence                 99999999999999999999999999997654321       112234568999999999986       34667


Q ss_pred             ccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhh-cCCCc--HHHHHHHHHHHHHHhh
Q 044155          134 KSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVV-EDVSS--IEKEQQLHASAQVTFE  210 (239)
Q Consensus       134 ~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~li~~  210 (239)
                      ++||||||+++|+|++|..|+............+...................... .....  ......++.+.++|.+
T Consensus       215 ~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  294 (336)
T 3g2f_A          215 QVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIED  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHH
Confidence            89999999999999999887755443333222111111100000000000000000 00000  0012456789999999


Q ss_pred             hcCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 044155          211 CIKDSPADRPSMVDVAKKLRQIYRSLSCN  239 (239)
Q Consensus       211 cl~~dp~~Rps~~ell~~L~~l~~~~~~~  239 (239)
                      ||+.||++|||+.|+++.|+++...+..|
T Consensus       295 cl~~dP~~Rps~~e~l~~L~~ll~~~~~~  323 (336)
T 3g2f_A          295 CWDQDAEARLTAQXAEERMAELMMIWERN  323 (336)
T ss_dssp             HSCSSGGGSCCHHHHHHHHHHHHHCCCC-
T ss_pred             HhcCChhhCcchHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888765

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=6.9e-42  Score=280.20  Aligned_cols=217  Identities=14%  Similarity=0.131  Sum_probs=166.8

Q ss_pred             CCCCcccceeeEEEEeC----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            1 QMSHNHILKLIGCCLET----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +++||||+++++++...    ...++||||+ +++|.+++....    ..+++..+..++.|++.||.|||   +.+|+|
T Consensus       104 ~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~----~~l~~~~~~~i~~qi~~~l~~lH---~~~iiH  175 (364)
T 3op5_A          104 KLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA----KRFSRKTVLQLSLRILDILEYIH---EHEYVH  175 (364)
T ss_dssp             TCSCCCSCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHH---HTTEEC
T ss_pred             hccCCCCCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEE
Confidence            46899999999999865    3478999999 899999998753    56899999999999999999999   899999


Q ss_pred             ccccCcceeec--CCCceeEcccccccccCCCCc------ceeecccccccccCccccccCCcccccchhhhhhHHHHHh
Q 044155           77 RNFKTSCILFN--EENVAKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        77 ~dlk~~nil~~--~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~  148 (239)
                      |||||+|||++  .++.+||+|||+++.......      .......||+.|+|||++.+..++.++||||||+++|+|+
T Consensus       176 rDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~  255 (364)
T 3op5_A          176 GDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWL  255 (364)
T ss_dssp             CCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             ecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHH
Confidence            99999999999  889999999999976532211      1123445899999999999988999999999999999999


Q ss_pred             cCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          149 TGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       149 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      +|..||...........    ..... .........+..+..       ...+..+.+++..||..||.+|||+.++++.
T Consensus       256 ~g~~Pf~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~  323 (364)
T 3op5_A          256 TGHLPWEDNLKDPKYVR----DSKIR-YRENIASLMDKCFPA-------ANAPGEIAKYMETVKLLDYTEKPLYENLRDI  323 (364)
T ss_dssp             HSCCTTGGGTTCHHHHH----HHHHH-HHHCHHHHHHHHSCT-------TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHH
T ss_pred             hCCCCccccccCHHHHH----HHHHH-hhhhHHHHHHHhccc-------ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence            99999974322111100    00000 000111111111100       1235678999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 044155          229 LRQIYRSLS  237 (239)
Q Consensus       229 L~~l~~~~~  237 (239)
                      |++++....
T Consensus       324 l~~~~~~~~  332 (364)
T 3op5_A          324 LLQGLKAIG  332 (364)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999988754

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3e-41  Score=273.33  Aligned_cols=220  Identities=22%  Similarity=0.399  Sum_probs=163.1

Q ss_pred             CCCcccceeeEEEEeC----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC-----
Q 044155            2 MSHNHILKLIGCCLET----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR-----   72 (239)
Q Consensus         2 l~H~niv~l~~~~~~~----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~-----   72 (239)
                      ++||||+++++++...    ...++||||+++++|.++++.      ..++...+..++.|++.||.|||   ..     
T Consensus        88 ~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~  158 (337)
T 3mdy_A           88 MRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKS------TTLDAKSMLKLAYSSVSGLCHLH---TEIFSTQ  158 (337)
T ss_dssp             CCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHH---SCBCSTT
T ss_pred             hcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHH---Hhhhhhc
Confidence            5899999999999887    678999999999999999976      45889999999999999999999   77     


Q ss_pred             ---CeeeccccCcceeecCCCceeEcccccccccCCCCcc---eeecccccccccCccccccCCcccc------cchhhh
Q 044155           73 ---PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH---ITDTVMGTLGYCAPEYMRTGVFNEK------SNVFSF  140 (239)
Q Consensus        73 ---~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~------~Di~sl  140 (239)
                         +++|+||||+||+++.++.+||+|||++.........   ......||+.|+|||++.+......      +|||||
T Consensus       159 ~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Diwsl  238 (337)
T 3mdy_A          159 GKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSF  238 (337)
T ss_dssp             CBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHH
T ss_pred             cCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHH
Confidence               9999999999999999999999999998765332211   1234568999999999987765554      999999


Q ss_pred             hhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhc----CCC-cHHHHHHHHHHHHHHhhhcCCC
Q 044155          141 SVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVE----DVS-SIEKEQQLHASAQVTFECIKDS  215 (239)
Q Consensus       141 G~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~li~~cl~~d  215 (239)
                      |+++|+|++|..|+.......   .++.....   ...............    ... .......++.+.+++.+||+.|
T Consensus       239 G~il~el~tg~~~~~~~~~~~---~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  312 (337)
T 3mdy_A          239 GLILWEVARRCVSGGIVEEYQ---LPYHDLVP---SDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHN  312 (337)
T ss_dssp             HHHHHHHHTTBCBTTBCCCCC---CTTTTTSC---SSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHhccCccccccccc---ccHhhhcC---CCCchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhC
Confidence            999999999965553222111   11110000   000111111111111    111 1112367788999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHhh
Q 044155          216 PADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       216 p~~Rps~~ell~~L~~l~~~~  236 (239)
                      |.+|||+.++++.|+++.++.
T Consensus       313 P~~Rps~~ell~~L~~l~~~~  333 (337)
T 3mdy_A          313 PASRLTALRVKKTLAKMSESQ  333 (337)
T ss_dssp             GGGSCCHHHHHHHHHHHHHTT
T ss_pred             hhhCCCHHHHHHHHHHHHhhc
Confidence            999999999999999998764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=5.3e-42  Score=273.14  Aligned_cols=207  Identities=23%  Similarity=0.371  Sum_probs=162.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        67 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlk  138 (294)
T 4eqm_A           67 QLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESH-----GPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIK  138 (294)
T ss_dssp             TCCBTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred             cCCCCCCceEEEeeeeCCeEEEEEeCCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            478999999999999999999999999999999999875     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++...............||+.|+|||.+.+..++.++||||||+++|+|++|..||......
T Consensus       139 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~  218 (294)
T 4eqm_A          139 PQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAV  218 (294)
T ss_dssp             GGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHH
T ss_pred             HHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH
Confidence            99999999999999999998765443333344566899999999999988999999999999999999999998643210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHH---HHHHHHHHHHHHhhhcCCCCCCCC-CHHHHHHHHHHHHHhh
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIE---KEQQLHASAQVTFECIKDSPADRP-SMVDVAKKLRQIYRSL  236 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~cl~~dp~~Rp-s~~ell~~L~~l~~~~  236 (239)
                                           ...............   ....++.+.+++.+||+.||.+|| +++++.+.|..+..+-
T Consensus       219 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~  277 (294)
T 4eqm_A          219 ---------------------SIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHEN  277 (294)
T ss_dssp             ---------------------HHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSS
T ss_pred             ---------------------HHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhc
Confidence                                 000011111111110   113457789999999999999999 8999999998766543

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1e-42  Score=277.19  Aligned_cols=223  Identities=23%  Similarity=0.350  Sum_probs=163.9

Q ss_pred             CCCCcccceeeEEEEe--CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLE--TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~--~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++..  ....++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|
T Consensus        67 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~D  139 (295)
T 3ugc_A           67 SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK----ERIDHIKLLQYTSQICKGMEYLG---TKRYIHRD  139 (295)
T ss_dssp             TCCCTTBCCEEEEECHHHHTSCEEEEECCTTCBHHHHHHHCG----GGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred             hCCCCCEeeEEEEEecCCCCceEEEEEeCCCCCHHHHHHhcc----cccCHHHHHHHHHHHHHHHHHHh---cCCcccCC
Confidence            4789999999999864  356899999999999999998753    45899999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||+||+++.++.+||+|||++........  .......++..|+|||.+.+..++.++||||||+++|+|++|..|+..
T Consensus       140 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~  219 (295)
T 3ugc_A          140 LATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKS  219 (295)
T ss_dssp             CSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCS
T ss_pred             CCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCC
Confidence            999999999999999999999876543221  122334567789999999989999999999999999999999888754


Q ss_pred             ccccccccccchhhhhhh-hhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          157 VKDVHDLVCPFSEYLKNC-FEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      .......      ..... ........... ..........+...++.+.+++.+||+.||.+|||+.|+++.|+++.++
T Consensus       220 ~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~  292 (295)
T 3ugc_A          220 PPAEFMR------MIGNDKQGQMIVFHLIE-LLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN  292 (295)
T ss_dssp             HHHHHHH------HHCTTCCTHHHHHHHHH-HHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ChHHHHh------hhcCccccchhHHHHHH-HHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence            3211000      00000 00000001111 1111111112235567899999999999999999999999999999877


Q ss_pred             hc
Q 044155          236 LS  237 (239)
Q Consensus       236 ~~  237 (239)
                      +.
T Consensus       293 l~  294 (295)
T 3ugc_A          293 MA  294 (295)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=6e-42  Score=271.02  Aligned_cols=206  Identities=23%  Similarity=0.313  Sum_probs=154.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++ ..+..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        72 ~l~h~~iv~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk  143 (281)
T 1mp8_A           72 QFDHPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVRK----YSLDLASLILYAYQLSTALAYLE---SKRFVHRDIA  143 (281)
T ss_dssp             TCCCTTBCCEEEEE-CSSSCEEEEECCTTEEHHHHHHHTT----TTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             hCCCCccceEEEEE-ccCccEEEEecCCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccc
Confidence            47899999999998 4566889999999999999998653    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||++...............+++.|+|||.+.+..++.++||||||+++|+|++ |..||.....
T Consensus       144 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~  223 (281)
T 1mp8_A          144 ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN  223 (281)
T ss_dssp             GGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred             HHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCH
Confidence            999999999999999999987664433223334456788999999998889999999999999999996 8888864321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      .                     +.......... ...+...++.+.+++.+||+.||.+|||+.++++.|+++.++.
T Consensus       224 ~---------------------~~~~~i~~~~~-~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  278 (281)
T 1mp8_A          224 N---------------------DVIGRIENGER-LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE  278 (281)
T ss_dssp             G---------------------GHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             H---------------------HHHHHHHcCCC-CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence            1                     01111111100 0011244567899999999999999999999999999988764

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=4.1e-42  Score=270.09  Aligned_cols=205  Identities=18%  Similarity=0.338  Sum_probs=165.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        59 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dik  131 (268)
T 3sxs_A           59 KLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHG----KGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLA  131 (268)
T ss_dssp             HCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHHG----GGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCS
T ss_pred             hCCCCCEeeEEEEEccCCceEEEEEccCCCcHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcC
Confidence            3789999999999999999999999999999999997642    45899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+...............+++.|+|||.+.+..++.++||||||+++|+|++ |..||.....
T Consensus       132 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~  211 (268)
T 3sxs_A          132 ARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN  211 (268)
T ss_dssp             GGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred             cceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccCh
Confidence            999999999999999999987664443333334456778999999998889999999999999999999 8888754321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      .                     +.......... ...+...++.+.+++.+||+.||.+|||+.++++.|+.+..
T Consensus       212 ~---------------------~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~  264 (268)
T 3sxs_A          212 S---------------------EVVLKVSQGHR-LYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLRE  264 (268)
T ss_dssp             H---------------------HHHHHHHTTCC-CCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred             H---------------------HHHHHHHcCCC-CCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence            1                     11111111100 00011234578899999999999999999999999988754

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=2.4e-42  Score=293.26  Aligned_cols=206  Identities=22%  Similarity=0.384  Sum_probs=166.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++|+|.++++....   ..++...+..++.|++.||.|||   +++++|||||
T Consensus       272 ~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlk  345 (495)
T 1opk_A          272 EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNR---QEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLA  345 (495)
T ss_dssp             HCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCT---TTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hcCCCCEeeEEEEEecCCcEEEEEEccCCCCHHHHHHhcCc---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence            37899999999999999999999999999999999987543   56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+|||++.++.+||+|||+++..............+++.|+|||++....++.++||||||+++|||++ |..||.....
T Consensus       346 p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~  425 (495)
T 1opk_A          346 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL  425 (495)
T ss_dssp             GGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred             hhhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCH
Confidence            999999999999999999987654333222233446788999999998889999999999999999999 8888864321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      .                     +.... +........+...+..+.++|.+||+.||.+|||+.++++.|+.+..
T Consensus       426 ~---------------------~~~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~  478 (495)
T 1opk_A          426 S---------------------QVYEL-LEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ  478 (495)
T ss_dssp             G---------------------GHHHH-HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred             H---------------------HHHHH-HHcCCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence            0                     00100 01111111112445778999999999999999999999999987654

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=5.5e-42  Score=271.39  Aligned_cols=207  Identities=18%  Similarity=0.358  Sum_probs=166.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +++++|+|||
T Consensus        75 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dik  147 (283)
T 3gen_A           75 NLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR----HRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLA  147 (283)
T ss_dssp             TCCCTTBCCEEEEECSSSSEEEEECCCTTCBHHHHHHCGG----GCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCS
T ss_pred             cCCCCCEeeEEEEEecCCCeEEEEeccCCCcHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCc
Confidence            4789999999999999999999999999999999997642    56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++...............+++.|+|||.+.+..++.++||||||+++|+|++ |..||.....
T Consensus       148 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~  227 (283)
T 3gen_A          148 ARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN  227 (283)
T ss_dssp             GGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred             cceEEEcCCCCEEEccccccccccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccCh
Confidence            999999999999999999987654332222233446778999999998889999999999999999998 9888754321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      .                     +........ .....+...++.+.+++.+||+.||.+|||+.++++.|.++..+-
T Consensus       228 ~---------------------~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~e  282 (283)
T 3gen_A          228 S---------------------ETAEHIAQG-LRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDEE  282 (283)
T ss_dssp             H---------------------HHHHHHHTT-CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             h---------------------HHHHHHhcc-cCCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhcc
Confidence            0                     111111110 000011123467889999999999999999999999999988753

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=2.9e-41  Score=269.34  Aligned_cols=209  Identities=21%  Similarity=0.328  Sum_probs=158.1

Q ss_pred             CCCcccceeeEEEEeC----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCC-----CC
Q 044155            2 MSHNHILKLIGCCLET----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGF-----PR   72 (239)
Q Consensus         2 l~H~niv~l~~~~~~~----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~-----~~   72 (239)
                      ++||||+++++++...    ...++||||+++++|.++++.      ..+++..+..++.|++.||+|||...     +.
T Consensus        59 l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~  132 (301)
T 3q4u_A           59 LRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL------TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP  132 (301)
T ss_dssp             CCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHTT------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC
T ss_pred             ccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHHhh------cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Confidence            7899999999997653    357899999999999999954      46889999999999999999999311     46


Q ss_pred             CeeeccccCcceeecCCCceeEcccccccccCCCCcc---eeecccccccccCccccccC------CcccccchhhhhhH
Q 044155           73 PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH---ITDTVMGTLGYCAPEYMRTG------VFNEKSNVFSFSVF  143 (239)
Q Consensus        73 ~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~slG~~  143 (239)
                      +++|+||||+||+++.++.+||+|||++.........   ......||+.|+|||++.+.      .++.++||||||++
T Consensus       133 ~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~i  212 (301)
T 3q4u_A          133 AIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLV  212 (301)
T ss_dssp             EEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHH
Confidence            8999999999999999999999999998765433221   12334689999999999876      45679999999999


Q ss_pred             HHHHhcC----------CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhc----CC-CcHHHHHHHHHHHHHH
Q 044155          144 LFELLTG----------WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVE----DV-SSIEKEQQLHASAQVT  208 (239)
Q Consensus       144 l~~~~~g----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~li  208 (239)
                      +|+|++|          ..||........                ............    .. ........+..+.+++
T Consensus       213 l~el~tg~~~~~~~~~~~~pf~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  276 (301)
T 3q4u_A          213 LWEVARRMVSNGIVEDYKPPFYDVVPNDP----------------SFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLM  276 (301)
T ss_dssp             HHHHHTTBCBTTBCCCCCCTTTTTSCSSC----------------CHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHH
T ss_pred             HHHHHhhhcCccccccccccccccCCCCc----------------chhhhhHHHhccCCCCCCChhhccCccHHHHHHHH
Confidence            9999999          444432211110                000000000000    00 0111235678899999


Q ss_pred             hhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          209 FECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       209 ~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      .+||+.||.+|||+.++++.|+++
T Consensus       277 ~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          277 KECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             HHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHhhcChhhCCCHHHHHHHHhcc
Confidence            999999999999999999999876

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=1.2e-41  Score=272.99  Aligned_cols=210  Identities=22%  Similarity=0.374  Sum_probs=167.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-------------------CCCcCCHHHHHHHHHHHHH
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-------------------HFEPLLLKHRLKIAMDIVH   61 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-------------------~~~~~~~~~~~~~~~~i~~   61 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++......                   ....++...+..++.|++.
T Consensus        82 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~  161 (314)
T 2ivs_A           82 QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQ  161 (314)
T ss_dssp             TCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHH
T ss_pred             hCCCCceeeEEEEEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999875321                   0134889999999999999


Q ss_pred             HHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhh
Q 044155           62 ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSF  140 (239)
Q Consensus        62 ~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  140 (239)
                      ||.|||   +++++|+||||+||+++.++.++|+|||++........ .......+++.|+|||.+.+..++.++|||||
T Consensus       162 ~l~~lH---~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  238 (314)
T 2ivs_A          162 GMQYLA---EMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSF  238 (314)
T ss_dssp             HHHHHH---HTTEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHH
T ss_pred             HHHHHH---HCCCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHH
Confidence            999999   89999999999999999999999999999876543322 12234456788999999998889999999999


Q ss_pred             hhHHHHHhc-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCC
Q 044155          141 SVFLFELLT-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       141 G~~l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R  219 (239)
                      |+++|+|++ |..||......                     .......... ....+...++.+.+++.+||+.||.+|
T Consensus       239 G~il~el~t~g~~p~~~~~~~---------------------~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~dp~~R  296 (314)
T 2ivs_A          239 GVLLWEIVTLGGNPYPGIPPE---------------------RLFNLLKTGH-RMERPDNCSEEMYRLMLQCWKQEPDKR  296 (314)
T ss_dssp             HHHHHHHHTTSCCSSTTCCGG---------------------GHHHHHHTTC-CCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHHHHHHhCCCCCCCCCCHH---------------------HHHHHhhcCC-cCCCCccCCHHHHHHHHHHccCChhhC
Confidence            999999999 98888543210                     0000000000 001112445678999999999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 044155          220 PSMVDVAKKLRQIYRS  235 (239)
Q Consensus       220 ps~~ell~~L~~l~~~  235 (239)
                      ||+.++++.|+++...
T Consensus       297 ps~~~l~~~l~~~~~~  312 (314)
T 2ivs_A          297 PVFADISKDLEKMMVK  312 (314)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhh
Confidence            9999999999998765

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=6.4e-41  Score=266.97  Aligned_cols=213  Identities=12%  Similarity=0.055  Sum_probs=168.2

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +|+||+++++++.+....++||||+ +++|.+++....    ..++...+..++.|++.||.|||   +++++|+||||+
T Consensus        64 ~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~  135 (298)
T 1csn_A           64 GCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCG----RKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPD  135 (298)
T ss_dssp             TCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGG
T ss_pred             cCCCCCeEEeecCCCceeEEEEEec-CCCHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHH
Confidence            7999999999999999999999999 899999998653    46899999999999999999999   999999999999


Q ss_pred             ceeecCCCc-----eeEcccccccccCCCCc------ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCC
Q 044155           83 CILFNEENV-----AKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        83 nil~~~~~~-----~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      ||+++.++.     ++|+|||++........      .......||+.|+|||++.+..++.++||||||+++|+|++|.
T Consensus       136 NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~  215 (298)
T 1csn_A          136 NFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGS  215 (298)
T ss_dssp             GEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             HEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCC
Confidence            999987765     99999999876543221      1234556899999999999888999999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||..........     ...         ...... ............++.+.+++.+||+.||.+|||+++|++.|++
T Consensus       216 ~pf~~~~~~~~~~-----~~~---------~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~  280 (298)
T 1csn_A          216 LPWQGLKAATNKQ-----KYE---------RIGEKK-QSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSK  280 (298)
T ss_dssp             CTTSSCCSCCHHH-----HHH---------HHHHHH-HHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHH
T ss_pred             CCcchhhccccHH-----HHH---------HHHhhc-cCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHH
Confidence            9987543211100     000         000000 0000000111345778999999999999999999999999999


Q ss_pred             HHHhhcC
Q 044155          232 IYRSLSC  238 (239)
Q Consensus       232 l~~~~~~  238 (239)
                      +.+++..
T Consensus       281 ~~~~~~~  287 (298)
T 1csn_A          281 VLERLNT  287 (298)
T ss_dssp             HHHHTTC
T ss_pred             HHHhcCC
Confidence            9987653

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=1.6e-41  Score=285.13  Aligned_cols=203  Identities=26%  Similarity=0.370  Sum_probs=162.9

Q ss_pred             CCCCcccceeeEEEEeCC-CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETP-IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~-~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++||||+++++++.+.. ..++||||+++|+|.+++.....   ..++...+..++.|++.||+|||   +++++||||
T Consensus       242 ~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDl  315 (450)
T 1k9a_A          242 QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDL  315 (450)
T ss_dssp             TCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHHCT---TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCC
T ss_pred             hccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCC
Confidence            579999999999987765 78999999999999999987532   34789999999999999999999   899999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      ||+|||++.++.+||+|||+++.....    .....+++.|+|||++.+..++.++||||||+++|||++ |..||....
T Consensus       316 kp~Nill~~~~~~kl~DfG~a~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~  391 (450)
T 1k9a_A          316 AARNVLVSEDNVAKVSDFGLTKEASST----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP  391 (450)
T ss_dssp             CGGGEEECTTSCEEECCCTTCEECC----------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSC
T ss_pred             CHhhEEECCCCCEEEeeCCCccccccc----ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            999999999999999999998754222    123356889999999999999999999999999999998 988886432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ..                     +.......+ .....+...++.+.++|.+||+.||.+|||+.++++.|+++...
T Consensus       392 ~~---------------------~~~~~i~~~-~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          392 LK---------------------DVVPRVEKG-YKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             TT---------------------THHHHHHTT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HH---------------------HHHHHHHcC-CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence            11                     111111111 11111124567889999999999999999999999999998764

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=8.6e-42  Score=270.85  Aligned_cols=208  Identities=22%  Similarity=0.384  Sum_probs=169.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++.....   ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        65 ~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dik  138 (288)
T 3kfa_A           65 EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNR---QEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLA  138 (288)
T ss_dssp             HCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHCCT---TTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCS
T ss_pred             hCCCCCEeeEEEEEccCCCEEEEEEcCCCCcHHHHHHhccc---CCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCC
Confidence            37899999999999999999999999999999999987543   56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+...............+++.|+|||.+.+..++.++||||||+++|+|++ |..||.....
T Consensus       139 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~  218 (288)
T 3kfa_A          139 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL  218 (288)
T ss_dssp             GGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred             cceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            999999999999999999987665443333444557788999999998899999999999999999999 8888754321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      .                  ...+.+..    ......+...++.+.+++.+||..||.+|||+.++++.|+++..+.
T Consensus       219 ~------------------~~~~~~~~----~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~  273 (288)
T 3kfa_A          219 S------------------QVYELLEK----DYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQES  273 (288)
T ss_dssp             G------------------GHHHHHHT----TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             H------------------HHHHHHhc----cCCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhc
Confidence            0                  00011111    1111111234567899999999999999999999999999987754

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=6.9e-42  Score=273.14  Aligned_cols=220  Identities=24%  Similarity=0.322  Sum_probs=166.4

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++.+.  ...++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|
T Consensus        79 ~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~d  151 (302)
T 4e5w_A           79 NLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNK----NKINLKQQLKYAVQICKGMDYLG---SRQYVHRD  151 (302)
T ss_dssp             TCCCTTBCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSC
T ss_pred             hCCCCCeeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhcc----ccCCHHHHHHHHHHHHHHHHHhh---cCCcccCC
Confidence            47899999999999876  56789999999999999996543    46889999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||+||+++.++.++|+|||++........  .......++..|+|||.+.+..++.++||||||+++|+|++|..|+..
T Consensus       152 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  231 (302)
T 4e5w_A          152 LAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSS  231 (302)
T ss_dssp             CSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGS
T ss_pred             CchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcc
Confidence            999999999999999999999876644322  223345678889999999988899999999999999999999888643


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      .......      ................ ..........+...++.+.+++.+||+.||.+|||+.++++.|+++++
T Consensus       232 ~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll~  302 (302)
T 4e5w_A          232 PMALFLK------MIGPTHGQMTVTRLVN-TLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK  302 (302)
T ss_dssp             HHHHHHH------HHCSCCGGGHHHHHHH-HHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred             hhhHHhh------ccCCcccccCHHHHHH-HHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Confidence            2110000      0000000111111111 111111111122456789999999999999999999999999998863

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-41  Score=279.28  Aligned_cols=209  Identities=22%  Similarity=0.350  Sum_probs=167.4

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +||||+++++++.+.+..++||||+++++|.+++......           ....+++..+..++.|++.||.|||   +
T Consensus       133 ~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~  209 (382)
T 3tt0_A          133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---S  209 (382)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             CCchhhhheeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---h
Confidence            8999999999999999999999999999999999875421           1135899999999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-  149 (239)
                      .+++|+||||+||+++.++.+||+|||++........ .......+++.|+|||++.+..++.++||||||+++|+|++ 
T Consensus       210 ~~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~  289 (382)
T 3tt0_A          210 KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTL  289 (382)
T ss_dssp             TTCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999876543221 22334456889999999999899999999999999999999 


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||.....                     .+......... ....+...+..+.+++.+||+.||.+|||+.|+++.|
T Consensus       290 g~~p~~~~~~---------------------~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  347 (382)
T 3tt0_A          290 GGSPYPGVPV---------------------EELFKLLKEGH-RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  347 (382)
T ss_dssp             SCCSSTTCCH---------------------HHHHHHHHTTC-CCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCCCCH---------------------HHHHHHHHcCC-CCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            8888753221                     11111111110 0001123456789999999999999999999999999


Q ss_pred             HHHHHhh
Q 044155          230 RQIYRSL  236 (239)
Q Consensus       230 ~~l~~~~  236 (239)
                      +++....
T Consensus       348 ~~~~~~~  354 (382)
T 3tt0_A          348 DRIVALT  354 (382)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHH
Confidence            9988654

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=4.7e-41  Score=274.60  Aligned_cols=196  Identities=21%  Similarity=0.284  Sum_probs=161.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..+++..+..++.||+.||.|||   +.+++|+|||
T Consensus        71 ~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-----~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlk  142 (361)
T 2yab_A           71 QVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQK-----ESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLK  142 (361)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTTC-----SCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCcCCCcEEEEEEeCCEEEEEEEcCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCC
Confidence            478999999999999999999999999999999999764     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCC----ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEEN----VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+||+++.++    .+||+|||++.......  ......||+.|+|||++.+..++.++||||||+++|+|++|..||..
T Consensus       143 p~NIll~~~~~~~~~vkl~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~  220 (361)
T 2yab_A          143 PENIMLLDKNIPIPHIKLIDFGLAHEIEDGV--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG  220 (361)
T ss_dssp             GGGEEESCTTSSSCCEEECCCSSCEECCTTC--CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHEEEeCCCCCccCEEEEecCCceEcCCCC--ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCC
Confidence            9999998877    79999999997654332  22345689999999999988899999999999999999999999854


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                     .+....+.....  ........+..++++|.+||..||.+|||+.|+++
T Consensus       221 ~~~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          221 DTK---------------------QETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             SSH---------------------HHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CCH---------------------HHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            221                     111112211111  11122345677899999999999999999999985

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.1e-41  Score=275.06  Aligned_cols=193  Identities=21%  Similarity=0.313  Sum_probs=159.8

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+.+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++||||||
T Consensus        71 l~hpnIv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp  142 (328)
T 3fe3_A           71 LNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAH-----GRMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKA  142 (328)
T ss_dssp             CCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCG
T ss_pred             CCCCCEeeEEEEEEECCEEEEEEECCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCH
Confidence            68999999999999999999999999999999999775     56889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcc-cccchhhhhhHHHHHhcCCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFN-EKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      +||+++.++.+||+|||++.......  ......||+.|+|||++.+..+. .++||||||+++|+|++|..||....  
T Consensus       143 ~NIll~~~~~~kl~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~--  218 (328)
T 3fe3_A          143 ENLLLDADMNIKIADFGFSNEFTVGG--KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQN--  218 (328)
T ss_dssp             GGEEECTTSCEEECSTTCCGGGSSSC--GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSS--
T ss_pred             HHEEEcCCCCEEEeeccCceecCCCC--ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCC--
Confidence            99999999999999999987654332  23456789999999999887764 78999999999999999999985422  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                         ..+............+  ...++.+.+++.+||..||.+|||++|+++
T Consensus       219 -------------------~~~~~~~i~~~~~~~p--~~~s~~~~~li~~~L~~dP~~R~t~~eil~  264 (328)
T 3fe3_A          219 -------------------LKELRERVLRGKYRIP--FYMSTDCENLLKRFLVLNPIKRGTLEQIMK  264 (328)
T ss_dssp             -------------------HHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred             -------------------HHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                               1122222222222111  134567889999999999999999999975

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.2e-41  Score=271.78  Aligned_cols=196  Identities=15%  Similarity=0.252  Sum_probs=161.7

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+....++||||+++++|.+++....    ..+++..+..++.|++.||.|||   +.+++|+||||
T Consensus        58 l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp  130 (321)
T 1tki_A           58 ARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSA----FELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRP  130 (321)
T ss_dssp             SCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSS----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCG
T ss_pred             CCCCCCCeEeEEEecCCEEEEEEEeCCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCH
Confidence            689999999999999999999999999999999997642    46899999999999999999999   89999999999


Q ss_pred             cceeecC--CCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           82 SCILFNE--ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        82 ~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      +||+++.  ++.+||+|||++.......  ......+++.|+|||++.+..++.++||||||+++|+|++|..||.....
T Consensus       131 ~NIl~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  208 (321)
T 1tki_A          131 ENIIYQTRRSSTIKIIEFGQARQLKPGD--NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN  208 (321)
T ss_dssp             GGEEESSSSCCCEEECCCTTCEECCTTC--EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred             HHEEEccCCCCCEEEEECCCCeECCCCC--ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH
Confidence            9999987  7899999999997764432  23455689999999999988889999999999999999999999853221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCc--HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSS--IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           .+....+.......  ......+..+.+++.+||..||.+|||+.|+++
T Consensus       209 ---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~  257 (321)
T 1tki_A          209 ---------------------QQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             ---------------------HHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ---------------------HHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                                 11222222222211  112245678899999999999999999999987

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=2.9e-41  Score=265.27  Aligned_cols=201  Identities=20%  Similarity=0.353  Sum_probs=160.8

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC--eee
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP--IVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~--i~H   76 (239)
                      +++||||+++++++.+.  ...++||||+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+  ++|
T Consensus        63 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H  136 (271)
T 3kmu_A           63 IFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTN---FVVDQSQAVKFALDMARGMAFLH---TLEPLIPR  136 (271)
T ss_dssp             CCSCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHHHHSCSS---CCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTT
T ss_pred             hcCCCchhheEEEEccCCCCCeEeeecccCCCcHHHHHhhccc---CCCCHHHHHHHHHHHHHHHHHHh---cCCCceec
Confidence            47899999999999877  678999999999999999987532   35899999999999999999999   888  999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCccc---ccchhhhhhHHHHHhcCCCC
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNE---KSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~---~~Di~slG~~l~~~~~g~~p  153 (239)
                      +||||+||+++.++.++++|||++.....      ....+|+.|+|||.+.+...+.   ++||||||+++|+|++|..|
T Consensus       137 ~dikp~Nil~~~~~~~~l~~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p  210 (271)
T 3kmu_A          137 HALNSRSVMIDEDMTARISMADVKFSFQS------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVP  210 (271)
T ss_dssp             CCCSGGGEEECTTSCEEEEGGGSCCTTSC------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCT
T ss_pred             CCCccceEEEcCCcceeEEeccceeeecc------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence            99999999999999999998887654322      2345789999999998765544   79999999999999999999


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      |.....                     .+..............+...++.+.+++.+||+.||.+|||++++++.|+++.
T Consensus       211 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~  269 (271)
T 3kmu_A          211 FADLSN---------------------MEIGMKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ  269 (271)
T ss_dssp             TTTSCH---------------------HHHHHHHHHSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred             ccccCh---------------------HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence            853321                     11111111111111112245567899999999999999999999999999875


Q ss_pred             H
Q 044155          234 R  234 (239)
Q Consensus       234 ~  234 (239)
                      +
T Consensus       270 ~  270 (271)
T 3kmu_A          270 D  270 (271)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=1.8e-41  Score=278.39  Aligned_cols=206  Identities=19%  Similarity=0.289  Sum_probs=155.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++....    ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus       102 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlk  174 (373)
T 2qol_A          102 QFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHD----AQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLA  174 (373)
T ss_dssp             TCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTT----TCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCCCCeEEEEEeeCCceEEEEeCCCCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCC
Confidence            5799999999999999999999999999999999998653    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.+||+|||++.........  ......+++.|+|||++.+..++.++||||||+++||+++ |..||...
T Consensus       175 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~  254 (373)
T 2qol_A          175 ARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM  254 (373)
T ss_dssp             GGGEEECTTCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC
T ss_pred             cceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999998765432211  1122235678999999998899999999999999999998 98887543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ..                     .+......... ....+...+..+.+++.+||+.||.+|||+.++++.|+++...
T Consensus       255 ~~---------------------~~~~~~i~~~~-~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  310 (373)
T 2qol_A          255 SN---------------------QDVIKAVDEGY-RLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN  310 (373)
T ss_dssp             CH---------------------HHHHHHHHTTE-ECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CH---------------------HHHHHHHHcCC-CCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence            21                     01111111110 0000113456789999999999999999999999999998764

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.1e-41  Score=267.25  Aligned_cols=206  Identities=23%  Similarity=0.383  Sum_probs=165.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        59 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~  131 (267)
T 3t9t_A           59 KLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQR----GLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLA  131 (267)
T ss_dssp             TCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCC
T ss_pred             hCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhCc----ccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCc
Confidence            4789999999999999999999999999999999998653    45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++...............++..|+|||++.+..++.++||||||+++|+|++ |..||.....
T Consensus       132 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~  211 (267)
T 3t9t_A          132 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN  211 (267)
T ss_dssp             GGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred             hheEEECCCCCEEEcccccccccccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH
Confidence            999999999999999999987654322222234456788999999998889999999999999999999 8888753221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                                           .+......... ....+...+..+.+++.+||+.||.+|||+.++++.|+++.++
T Consensus       212 ---------------------~~~~~~i~~~~-~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (267)
T 3t9t_A          212 ---------------------SEVVEDISTGF-RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  265 (267)
T ss_dssp             ---------------------HHHHHHHHTTC-CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ---------------------HHHHHHHhcCC-cCCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence                                 01111111110 0001113356788999999999999999999999999998763

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=3e-42  Score=289.91  Aligned_cols=206  Identities=21%  Similarity=0.361  Sum_probs=164.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++. ....++||||+++|+|.++++....   ..++...+..++.|++.||.|||   +++++|||||
T Consensus       239 ~l~h~~iv~l~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlk  311 (454)
T 1qcf_A          239 TLQHDKLVKLHAVVT-KEPIYIITEFMAKGSLLDFLKSDEG---SKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLR  311 (454)
T ss_dssp             TCCCTTBCCEEEEEC-SSSCEEEECCCTTCBHHHHHHSHHH---HTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCS
T ss_pred             hCCCCCEeeEEEEEe-CCccEEEEeecCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCC
Confidence            479999999999986 5678999999999999999975422   35788899999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+|||++.++.+||+|||+++..............+++.|+|||++....++.++||||||+++|||++ |..||.....
T Consensus       312 p~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~  391 (454)
T 1qcf_A          312 AANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN  391 (454)
T ss_dssp             GGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH
T ss_pred             HHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH
Confidence            999999999999999999997654322222223346788999999998899999999999999999999 9888854321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                                           .+........ .....+...++.+.++|.+||+.||.+|||+++|++.|+++...
T Consensus       392 ---------------------~~~~~~i~~~-~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~  445 (454)
T 1qcf_A          392 ---------------------PEVIRALERG-YRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA  445 (454)
T ss_dssp             ---------------------HHHHHHHHHT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred             ---------------------HHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence                                 1111111111 11111124567789999999999999999999999999987654

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=8.1e-41  Score=270.36  Aligned_cols=208  Identities=16%  Similarity=0.136  Sum_probs=166.4

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++..+...++||||+ +++|.+++....    ..+++..+..++.|++.||.|||   +.+++||||||+
T Consensus        63 ~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~  134 (330)
T 2izr_A           63 SGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLCD----RTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPE  134 (330)
T ss_dssp             SCTTSCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGG
T ss_pred             CCCCCCEEEEEEecCCccEEEEEeC-CCCHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHH
Confidence            8999999999999999999999999 899999998652    56899999999999999999999   899999999999


Q ss_pred             ceeecCCCc-----eeEcccccccccCCCCcc------eeecccccccccCccccccCCcccccchhhhhhHHHHHhcCC
Q 044155           83 CILFNEENV-----AKLFDFSLSISIPEGETH------ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        83 nil~~~~~~-----~~l~dfg~~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      ||+++.++.     ++|+|||++.........      ......||+.|+|||++.+..++.++||||||+++|+|++|.
T Consensus       135 Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~  214 (330)
T 2izr_A          135 NFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGS  214 (330)
T ss_dssp             GEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             HeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCC
Confidence            999999887     999999999765332211      124567899999999999999999999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhc--CCCcH-HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVE--DVSSI-EKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      .||.......                  ..+....+...  ..... .....+ .+.+++..||+.||.+||+++++.+.
T Consensus       215 ~Pf~~~~~~~------------------~~~~~~~i~~~~~~~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~  275 (330)
T 2izr_A          215 LPWQGLKADT------------------LKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKL  275 (330)
T ss_dssp             CTTTTCCCSS------------------HHHHHHHHHHHHHHSCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHH
T ss_pred             CCcccccccc------------------HHHHHHHHHhhhccCCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence            9986542110                  00111111000  00000 001133 79999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 044155          229 LRQIYRSLS  237 (239)
Q Consensus       229 L~~l~~~~~  237 (239)
                      |+++.....
T Consensus       276 l~~~~~~~~  284 (330)
T 2izr_A          276 FTDLFDRKG  284 (330)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999987653

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=1.7e-41  Score=274.01  Aligned_cols=205  Identities=19%  Similarity=0.316  Sum_probs=162.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++. .++|+|++.+|+|.+++....    ..++...+..++.|++.||.|||   +++++|||||
T Consensus        73 ~l~h~~iv~~~~~~~~~~-~~~v~e~~~~g~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dik  144 (327)
T 3poz_A           73 SVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHK----DNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLA  144 (327)
T ss_dssp             HCCBTTBCCEEEEEESSS-EEEEEECCTTCBHHHHHHHST----TSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCCEeEEEEEEecCC-eEEEEEecCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCC
Confidence            378999999999998755 778999999999999998753    56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.+||+|||+++....... .......+|+.|+|||.+.+..++.++||||||+++|+|++ |..||....
T Consensus       145 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~  224 (327)
T 3poz_A          145 ARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP  224 (327)
T ss_dssp             GGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             hheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC
Confidence            9999999999999999999876643322 12234456789999999999999999999999999999999 988886432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ..                  .....+...    .....+...+..+.+++.+||+.||.+|||+.++++.|+.+...
T Consensus       225 ~~------------------~~~~~~~~~----~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~  279 (327)
T 3poz_A          225 AS------------------EISSILEKG----ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             GG------------------GHHHHHHTT----CCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred             HH------------------HHHHHHHcC----CCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence            10                  001111111    00111123456788999999999999999999999999988653

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.1e-41  Score=275.14  Aligned_cols=210  Identities=20%  Similarity=0.335  Sum_probs=164.2

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCC------------------CCcCCHHHHHHHHHHHHHHHh
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPH------------------FEPLLLKHRLKIAMDIVHALA   64 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~------------------~~~~~~~~~~~~~~~i~~~l~   64 (239)
                      +||||+++++++...+..++||||+++++|.+++.......                  ...+++..+..++.|++.||.
T Consensus       107 ~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~  186 (344)
T 1rjb_A          107 SHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGME  186 (344)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeeEEEEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999998753210                  123789999999999999999


Q ss_pred             HHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCcccccchhhhhhH
Q 044155           65 YLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVF  143 (239)
Q Consensus        65 ~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~  143 (239)
                      |||   +.+++|+||||+||+++.++.++|+|||++....... ........+|+.|+|||.+.+..++.++||||||++
T Consensus       187 ~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~i  263 (344)
T 1rjb_A          187 FLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGIL  263 (344)
T ss_dssp             HHH---HTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHH---hCCcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHH
Confidence            999   8999999999999999999999999999987553322 222344557889999999988889999999999999


Q ss_pred             HHHHhc-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          144 LFELLT-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       144 l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                      +|+|++ |..||........                 .....    ........+...++.+.+++.+||+.||.+|||+
T Consensus       264 l~el~t~g~~p~~~~~~~~~-----------------~~~~~----~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  322 (344)
T 1rjb_A          264 LWEIFSLGVNPYPGIPVDAN-----------------FYKLI----QNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSF  322 (344)
T ss_dssp             HHHHTTTSCCSSTTCCCSHH-----------------HHHHH----HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHHHcCCCCCcccCCcHHH-----------------HHHHH----hcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCH
Confidence            999998 9888864331110                 00111    1111111112345678999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 044155          223 VDVAKKLRQIYRSL  236 (239)
Q Consensus       223 ~ell~~L~~l~~~~  236 (239)
                      .++++.|+.+....
T Consensus       323 ~~l~~~l~~~~~~~  336 (344)
T 1rjb_A          323 PNLTSFLGCQLADA  336 (344)
T ss_dssp             HHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987653

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=1.8e-40  Score=265.59  Aligned_cols=219  Identities=24%  Similarity=0.415  Sum_probs=168.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++......  ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        86 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlk  160 (307)
T 2nru_A           86 KCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGT--PPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIK  160 (307)
T ss_dssp             HCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGC--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred             hcCCCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCC
Confidence            368999999999999999999999999999999998754221  46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++........ .......|++.|+|||.+.+ .++.++||||||+++|+|++|..||.....
T Consensus       161 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~  239 (307)
T 2nru_A          161 SANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHRE  239 (307)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBS
T ss_pred             HHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcc
Confidence            9999999999999999999876543222 22334568999999998864 578999999999999999999999875443


Q ss_pred             cccccccchhhhhhhhh-ccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFE-DNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      .....    ........ .......+    ..... ......+..+.+++.+||+.||.+|||+.++++.|+++..
T Consensus       240 ~~~~~----~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          240 PQLLL----DIKEEIEDEEKTIEDYI----DKKMN-DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             SSBTT----HHHHHHHTTSCCHHHHS----CSSCS-CCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             hHHHH----HHHHHhhhhhhhhhhhc----ccccc-ccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            21111    11111110 11111111    11111 1123567789999999999999999999999999998864

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=2.4e-41  Score=275.08  Aligned_cols=207  Identities=15%  Similarity=0.127  Sum_probs=161.7

Q ss_pred             CCCCcccceeeEEEEe----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            1 QMSHNHILKLIGCCLE----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +++||||+++++++..    ....++||||+ +++|.+++...     ..+++..+..++.|++.||+|||   +.+++|
T Consensus       104 ~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH  174 (345)
T 2v62_A          104 QLDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQN-----GTFKKSTVLQLGIRMLDVLEYIH---ENEYVH  174 (345)
T ss_dssp             TCSCCCCCCEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGG-----GBCCHHHHHHHHHHHHHHHHHHH---HTTEEC
T ss_pred             cccccCcceeecccccccCCCcEEEEEEecc-CCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeC
Confidence            3689999999999987    67789999999 89999999765     47899999999999999999999   899999


Q ss_pred             ccccCcceeecCCC--ceeEcccccccccCCCC------cceeecccccccccCccccccCCcccccchhhhhhHHHHHh
Q 044155           77 RNFKTSCILFNEEN--VAKLFDFSLSISIPEGE------THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        77 ~dlk~~nil~~~~~--~~~l~dfg~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~  148 (239)
                      +||||+||+++.++  .+||+|||+++......      ........|++.|+|||++.+..++.++||||||+++|+|+
T Consensus       175 ~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell  254 (345)
T 2v62_A          175 GDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWL  254 (345)
T ss_dssp             SCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHH
Confidence            99999999999887  99999999997653221      11123456899999999999888999999999999999999


Q ss_pred             cCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHH-----HHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          149 TGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEK-----EQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       149 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      +|..||..........                 ................     ...+..+.+++.+||+.||.+|||++
T Consensus       255 ~g~~pf~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  317 (345)
T 2v62_A          255 CGKLPWEQNLKDPVAV-----------------QTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQ  317 (345)
T ss_dssp             HSSCTTGGGTTCHHHH-----------------HHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHH
T ss_pred             hCCCCccccccccHHH-----------------HHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHH
Confidence            9999985321110000                 0000000001110000     03456789999999999999999999


Q ss_pred             HHHHHHHHHH
Q 044155          224 DVAKKLRQIY  233 (239)
Q Consensus       224 ell~~L~~l~  233 (239)
                      ++++.|+++.
T Consensus       318 ~l~~~L~~~~  327 (345)
T 2v62_A          318 ALKKILNPHG  327 (345)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHHhccC
Confidence            9999998754

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1.1e-40  Score=270.15  Aligned_cols=195  Identities=19%  Similarity=0.274  Sum_probs=160.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++|+|.+++...     ..+++..++.++.||+.||.|||   +++|+|||||
T Consensus        61 ~l~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlk  132 (337)
T 1o6l_A           61 NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE-----RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIK  132 (337)
T ss_dssp             SCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCC
T ss_pred             hCCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCC
Confidence            478999999999999999999999999999999999765     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.+||+|||+++..... ........||+.|+|||++.+..++.++|+||||+++|+|++|..||....  
T Consensus       133 p~NIll~~~g~vkL~DFG~a~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~--  209 (337)
T 1o6l_A          133 LENLMLDKDGHIKITDFGLCKEGISD-GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD--  209 (337)
T ss_dssp             GGGEEECTTSCEEECCCTTCBCSCCT-TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS--
T ss_pred             HHHEEECCCCCEEEeeccchhhcccC-CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCC--
Confidence            99999999999999999998753222 122345679999999999999899999999999999999999999985322  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                         .......+.......  +...++.+.++|.+||+.||.+||     +++|+++
T Consensus       210 -------------------~~~~~~~i~~~~~~~--p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~  260 (337)
T 1o6l_A          210 -------------------HERLFELILMEEIRF--PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             -------------------HHHHHHHHHHCCCCC--CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             -------------------HHHHHHHHHcCCCCC--CCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence                               111111111111111  123456789999999999999999     8999876

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=2e-41  Score=271.67  Aligned_cols=211  Identities=19%  Similarity=0.356  Sum_probs=167.9

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-------------CCCcCCHHHHHHHHHHHHHHHhHHhhC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-------------HFEPLLLKHRLKIAMDIVHALAYLHFG   69 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-------------~~~~~~~~~~~~~~~~i~~~l~~LH~~   69 (239)
                      +||||+++++++.+.+..++||||+++++|.+++......             ....+++..+..++.|++.||.|||  
T Consensus        85 ~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH--  162 (313)
T 1t46_A           85 NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA--  162 (313)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             cCCCeeeEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH--
Confidence            8999999999999999999999999999999999875421             0124889999999999999999999  


Q ss_pred             CCCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHh
Q 044155           70 FPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        70 ~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~  148 (239)
                       +.+++|+||||+||+++.++.++|+|||++........ .......+++.|+|||.+.+..++.++||||||+++|+|+
T Consensus       163 -~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell  241 (313)
T 1t46_A          163 -SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELF  241 (313)
T ss_dssp             -HTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             -HCCeecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHH
Confidence             89999999999999999999999999999876543322 1233455778899999998889999999999999999999


Q ss_pred             c-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          149 T-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       149 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      + |..||........                 .......    ......+...+..+.+++.+||+.||.+|||+.|+++
T Consensus       242 t~g~~p~~~~~~~~~-----------------~~~~~~~----~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  300 (313)
T 1t46_A          242 SLGSSPYPGMPVDSK-----------------FYKMIKE----GFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ  300 (313)
T ss_dssp             TTTCCSSTTCCSSHH-----------------HHHHHHH----TCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             hCCCCCCCcccchhH-----------------HHHHhcc----CCCCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence            9 8888864321100                 0011111    0111111234567899999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 044155          228 KLRQIYRSLS  237 (239)
Q Consensus       228 ~L~~l~~~~~  237 (239)
                      .|+++..+..
T Consensus       301 ~L~~~~~~~~  310 (313)
T 1t46_A          301 LIEKQISEST  310 (313)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhh
Confidence            9999987654

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=6e-41  Score=266.54  Aligned_cols=205  Identities=22%  Similarity=0.325  Sum_probs=163.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++ ..+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        74 ~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dik  144 (291)
T 1xbb_A           74 QLDNPYIVRMIGIC-EAESWMLVMEMAELGPLNKYLQQN-----RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLA  144 (291)
T ss_dssp             TCCCTTBCCEEEEE-ESSSEEEEEECCTTEEHHHHHHHC-----TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hCCCCCEEEEEEEE-CCCCcEEEEEeCCCCCHHHHHHhC-----cCCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCC
Confidence            47899999999999 666789999999999999999875     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++.........  ......+++.|+|||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       145 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  224 (291)
T 1xbb_A          145 ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM  224 (291)
T ss_dssp             GGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             cceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence            99999999999999999998765433221  1223345688999999988889999999999999999999 98888643


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      ...                     +......... ....+...+..+.+++.+||+.||.+|||+.++++.|++++.+.
T Consensus       225 ~~~---------------------~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~  281 (291)
T 1xbb_A          225 KGS---------------------EVTAMLEKGE-RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV  281 (291)
T ss_dssp             CHH---------------------HHHHHHHTTC-CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             CHH---------------------HHHHHHHcCC-CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence            210                     0111111110 01111244567899999999999999999999999999998764

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=1.6e-41  Score=274.02  Aligned_cols=205  Identities=20%  Similarity=0.331  Sum_probs=160.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++. ....++||||+.+++|.+++....    ..+++..+..++.|++.||.|||   +.+++|||||
T Consensus        71 ~l~h~~iv~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dik  142 (325)
T 3kex_A           71 SLDHAHIVRLLGLCP-GSSLQLVTQYLPLGSLLDHVRQHR----GALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLA  142 (325)
T ss_dssp             TCCCTTBCCEEEEEC-BSSEEEEEECCTTCBSHHHHHSSG----GGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             cCCCCCcCeEEEEEc-CCccEEEEEeCCCCCHHHHHHHcc----ccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccc
Confidence            478999999999986 456889999999999999997653    46888999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.+||+|||++........ .......++..|+|||++.+..++.++||||||+++|+|++ |..||....
T Consensus       143 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  222 (325)
T 3kex_A          143 ARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLR  222 (325)
T ss_dssp             STTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred             hheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccC
Confidence            9999999999999999999987643322 22344567789999999998899999999999999999999 999986432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ..                  .....+.......    .+...+..+.+++.+||..||.+|||+.++++.|+++...
T Consensus       223 ~~------------------~~~~~~~~~~~~~----~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~  277 (325)
T 3kex_A          223 LA------------------EVPDLLEKGERLA----QPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD  277 (325)
T ss_dssp             TT------------------HHHHHHHTTCBCC----CCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred             HH------------------HHHHHHHcCCCCC----CCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            10                  0001111000000    0112344578899999999999999999999999988653

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=278.81  Aligned_cols=209  Identities=20%  Similarity=0.344  Sum_probs=164.7

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC--CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP--HFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      ++||||+++++++.+....++||||+++|+|.+++......  ....++...++.++.|++.||.|||   +++|+||||
T Consensus       131 l~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDl  207 (367)
T 3l9p_A          131 FNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDI  207 (367)
T ss_dssp             CCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred             CCCCCCCeEEEEEecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCC
Confidence            68999999999999999999999999999999999865321  1145889999999999999999999   899999999


Q ss_pred             cCcceeecCCC---ceeEcccccccccCC-CCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCc
Q 044155           80 KTSCILFNEEN---VAKLFDFSLSISIPE-GETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVS  154 (239)
Q Consensus        80 k~~nil~~~~~---~~~l~dfg~~~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~  154 (239)
                      ||+|||++.++   .+||+|||+++.... ..........+|+.|+|||++.+..++.++||||||+++|+|++ |..||
T Consensus       208 kp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf  287 (367)
T 3l9p_A          208 AARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPY  287 (367)
T ss_dssp             CGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred             ChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999555   599999999875421 11122335567889999999998899999999999999999998 88887


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      .....                     .+.......... ...+...+..+.+++.+||+.||.+|||+.++++.|+.+..
T Consensus       288 ~~~~~---------------------~~~~~~i~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~  345 (367)
T 3l9p_A          288 PSKSN---------------------QEVLEFVTSGGR-MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ  345 (367)
T ss_dssp             TTCCH---------------------HHHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCH---------------------HHHHHHHHcCCC-CCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhh
Confidence            53221                     111111111110 00112345678899999999999999999999999998765


Q ss_pred             h
Q 044155          235 S  235 (239)
Q Consensus       235 ~  235 (239)
                      .
T Consensus       346 ~  346 (367)
T 3l9p_A          346 D  346 (367)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=2.2e-41  Score=276.49  Aligned_cols=210  Identities=21%  Similarity=0.367  Sum_probs=164.0

Q ss_pred             CCcccceeeEEEEeCC-CceEEEEEccCCChhhhhhcCCCCC--------------------------------------
Q 044155            3 SHNHILKLIGCCLETP-IPILVFESVQYGTLWDRILGAPQPH--------------------------------------   43 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~-~~~iv~e~~~~~sL~~~l~~~~~~~--------------------------------------   43 (239)
                      +||||+++++++.+.+ ..++||||+++|+|.+++.......                                      
T Consensus        84 ~hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (359)
T 3vhe_A           84 HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSA  163 (359)
T ss_dssp             CCTTBCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------
T ss_pred             CCcceeeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccc
Confidence            7999999999998765 4899999999999999998753210                                      


Q ss_pred             -----------------------CCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccc
Q 044155           44 -----------------------FEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS  100 (239)
Q Consensus        44 -----------------------~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~  100 (239)
                                             ...+++..+..++.|++.||+|||   +++++|+||||+||+++.++.++|+|||++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a  240 (359)
T 3vhe_A          164 SSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLA  240 (359)
T ss_dssp             --------------------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGG
T ss_pred             ccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccce
Confidence                                   012889999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCC-cceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccccccccccchhhhhhhhhcc
Q 044155          101 ISIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKDVHDLVCPFSEYLKNCFEDN  178 (239)
Q Consensus       101 ~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  178 (239)
                      ....... ........+|+.|+|||++.+..++.++||||||+++|+|++ |..||........                
T Consensus       241 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~----------------  304 (359)
T 3vhe_A          241 RDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE----------------  304 (359)
T ss_dssp             SCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH----------------
T ss_pred             eeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHH----------------
Confidence            7653322 223345567889999999998899999999999999999998 9888854321100                


Q ss_pred             chhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          179 RFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                           .............+...++.+.+++.+||+.||.+|||+.|+++.|+++....
T Consensus       305 -----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  357 (359)
T 3vhe_A          305 -----FCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  357 (359)
T ss_dssp             -----HHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence                 00000110001111234567899999999999999999999999999988753

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=2.4e-41  Score=274.60  Aligned_cols=212  Identities=24%  Similarity=0.354  Sum_probs=165.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-------------------CCCcCCHHHHHHHHHHHHH
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-------------------HFEPLLLKHRLKIAMDIVH   61 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-------------------~~~~~~~~~~~~~~~~i~~   61 (239)
                      +++||||+++++++.+....++||||+++++|.+++......                   ....+++..++.++.|++.
T Consensus       106 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~  185 (343)
T 1luf_A          106 EFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAA  185 (343)
T ss_dssp             TCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHH
T ss_pred             hCCCCCEEEEEEEEccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999874311                   0146889999999999999


Q ss_pred             HHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhh
Q 044155           62 ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSF  140 (239)
Q Consensus        62 ~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  140 (239)
                      ||.|||   +++++|+||||+||+++.++.+||+|||++........ .......+++.|+|||.+.+..++.++|||||
T Consensus       186 ~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~sl  262 (343)
T 1luf_A          186 GMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAY  262 (343)
T ss_dssp             HHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHH---hCCeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHH
Confidence            999999   89999999999999999999999999999876532211 12234557889999999998889999999999


Q ss_pred             hhHHHHHhc-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCC
Q 044155          141 SVFLFELLT-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       141 G~~l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R  219 (239)
                      |+++|+|++ |..||.....                     .+........... ..+...+..+.+++.+||+.||.+|
T Consensus       263 G~il~el~t~g~~p~~~~~~---------------------~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~R  320 (343)
T 1luf_A          263 GVVLWEIFSYGLQPYYGMAH---------------------EEVIYYVRDGNIL-ACPENCPLELYNLMRLCWSKLPADR  320 (343)
T ss_dssp             HHHHHHHHTTTCCTTTTSCH---------------------HHHHHHHHTTCCC-CCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHHHHHHhcCCCcCCCCCh---------------------HHHHHHHhCCCcC-CCCCCCCHHHHHHHHHHcccCcccC
Confidence            999999999 8888753221                     1111111111110 0112345678999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhc
Q 044155          220 PSMVDVAKKLRQIYRSLS  237 (239)
Q Consensus       220 ps~~ell~~L~~l~~~~~  237 (239)
                      ||+.++++.|+++.....
T Consensus       321 ps~~~~~~~L~~~~~~~~  338 (343)
T 1luf_A          321 PSFCSIHRILQRMCERAE  338 (343)
T ss_dssp             CCHHHHHHHHHHTTC---
T ss_pred             CCHHHHHHHHHHHHhhhh
Confidence            999999999999876653

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=6.1e-41  Score=280.61  Aligned_cols=197  Identities=22%  Similarity=0.307  Sum_probs=160.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++|+|.+.+...     ..+++..+..++.|++.||.|||   +.+|+|||||
T Consensus        66 ~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~~~-----~~~~e~~~~~i~~qil~aL~~lH---~~givHrDlK  137 (444)
T 3soa_A           66 LLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAR-----EYYSEADASHCIQQILEAVLHCH---QMGVVHRNLK  137 (444)
T ss_dssp             HCCBTTBCCEEEEEECSSEEEEEECCCBCCBHHHHHHHC-----SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCS
T ss_pred             hCCCcCCCeEEEEEEECCEEEEEEEeCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence            378999999999999999999999999999999999876     56899999999999999999999   8999999999


Q ss_pred             Ccceeec---CCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFN---EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~---~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++   .++.+||+|||++....... .......||+.|+|||++.+..++.++||||||+++|+|++|..||...
T Consensus       138 p~NIll~~~~~~~~vkL~DFG~a~~~~~~~-~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~  216 (444)
T 3soa_A          138 PENLLLASKLKGAAVKLADFGLAIEVEGEQ-QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE  216 (444)
T ss_dssp             STTEEESBSSTTCCEEECCCSSCBCCCTTC-CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             HHHEEEeccCCCCcEEEccCceeEEecCCC-ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc
Confidence            9999998   45789999999997654322 1223457899999999999889999999999999999999999998532


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                     .+....+..+...  .......++.+.++|.+||+.||.+|||+.|+++
T Consensus       217 ~~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          217 DQ---------------------HRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALK  267 (444)
T ss_dssp             SH---------------------HHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             cH---------------------HHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            21                     1111111111111  1111244577899999999999999999999987

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=6.3e-42  Score=287.79  Aligned_cols=206  Identities=24%  Similarity=0.346  Sum_probs=159.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+ ...++||||+++|+|.+++.....   ..++...+..++.|++.||+|||   +++++|||||
T Consensus       235 ~l~hp~iv~~~~~~~~-~~~~iv~e~~~~gsL~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlk  307 (452)
T 1fmk_A          235 KLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETG---KYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLR  307 (452)
T ss_dssp             HCCCTTBCCEEEEECS-SSCEEEECCCTTCBHHHHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             hCCCCCEeeEEEEEcC-CceEEEehhhcCCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence            3789999999999866 678999999999999999975322   45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+|||++.++.+||+|||++...............+++.|+|||.+....++.++||||||+++|+|++ |..||.....
T Consensus       308 p~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~  387 (452)
T 1fmk_A          308 AANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN  387 (452)
T ss_dssp             GGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH
T ss_pred             hhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCH
Confidence            999999999999999999987654332222334456788999999998899999999999999999999 8888854321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                                           .+.......+ .....+...+..+.++|.+||+.||.+|||++++++.|+++..+
T Consensus       388 ---------------------~~~~~~i~~~-~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~  441 (452)
T 1fmk_A          388 ---------------------REVLDQVERG-YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  441 (452)
T ss_dssp             ---------------------HHHHHHHHTT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred             ---------------------HHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhcc
Confidence                                 1111111111 11111124567789999999999999999999999999987654

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=9.9e-41  Score=272.04  Aligned_cols=200  Identities=21%  Similarity=0.292  Sum_probs=159.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+.+...... ...+++..+..++.|++.||.|||   +++++|||||
T Consensus        82 ~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlk  157 (351)
T 3c0i_A           82 MLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADA-GFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVK  157 (351)
T ss_dssp             HCCCTTBCCEEEEEEETTEEEEEEECCSSCBHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hCCCCCCCcEEEEEEeCCEEEEEEeCCCCCCHHHHHHHhccc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCC
Confidence            368999999999999999999999999999998877643210 035789999999999999999999   8999999999


Q ss_pred             CcceeecCCCc---eeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENV---AKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~---~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++.   +||+|||++....... .......||+.|+|||++.+..++.++||||||+++|+|++|..||...
T Consensus       158 p~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  236 (351)
T 3c0i_A          158 PHCVLLASKENSAPVKLGGFGVAIQLGESG-LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT  236 (351)
T ss_dssp             GGGEEECSSSTTCCEEECCCTTCEECCTTS-CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             hHHeEEecCCCCCcEEEecCcceeEecCCC-eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc
Confidence            99999987654   9999999987664332 1233456899999999999888999999999999999999999998542


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                      +...........  .......+..+.++|.+||+.||.+|||+.|+++
T Consensus       237 ~~----------------------~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          237 KE----------------------RLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             HH----------------------HHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HH----------------------HHHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            10                      111111111111  1111234677899999999999999999999986

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.7e-40  Score=267.50  Aligned_cols=196  Identities=17%  Similarity=0.267  Sum_probs=159.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++......++||||+++++|.+++..      ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        98 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~------~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlk  168 (321)
T 2c30_A           98 DYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ------VRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIK  168 (321)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            47899999999999999999999999999999999864      45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.+||+|||++....... .......||+.|+|||++.+..++.++||||||+++|+|++|..||......
T Consensus       169 p~NIll~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~  247 (321)
T 2c30_A          169 SDSILLTLDGRVKLSDFGFCAQISKDV-PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPV  247 (321)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSSS-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             HHHEEECCCCcEEEeeeeeeeecccCc-cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            999999999999999999987654322 1233556899999999999888999999999999999999999998543210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCC-CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           ........... ........++.+.+++.+||+.||.+|||+.|+++
T Consensus       248 ---------------------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  294 (321)
T 2c30_A          248 ---------------------QAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLD  294 (321)
T ss_dssp             ---------------------HHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ---------------------HHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                                 00001111100 00011234567889999999999999999999986

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.3e-41  Score=266.33  Aligned_cols=208  Identities=23%  Similarity=0.372  Sum_probs=166.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++ ..+..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        66 ~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk  137 (287)
T 1u59_A           66 QLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKR----EEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLA  137 (287)
T ss_dssp             HCCCTTBCCEEEEE-ESSSEEEEEECCTTEEHHHHHTTCT----TTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCEeEEEEEe-cCCCcEEEEEeCCCCCHHHHHHhCC----ccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCc
Confidence            36899999999999 5566899999999999999997543    56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++........  .......+++.|+|||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       138 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  217 (287)
T 1u59_A          138 ARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM  217 (287)
T ss_dssp             GGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             hheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC
Confidence            9999999999999999999876643322  11233446788999999988889999999999999999998 98888543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhhc
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLS  237 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~~  237 (239)
                      ...                     +......... ....+...++.+.+++.+||+.||.+|||+.++++.|.+++.+..
T Consensus       218 ~~~---------------------~~~~~i~~~~-~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~  275 (287)
T 1u59_A          218 KGP---------------------EVMAFIEQGK-RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLA  275 (287)
T ss_dssp             CTH---------------------HHHHHHHTTC-CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             CHH---------------------HHHHHHhcCC-cCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence            210                     1111111110 001112455778999999999999999999999999999988764


Q ss_pred             C
Q 044155          238 C  238 (239)
Q Consensus       238 ~  238 (239)
                      .
T Consensus       276 ~  276 (287)
T 1u59_A          276 S  276 (287)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.5e-41  Score=275.97  Aligned_cols=208  Identities=23%  Similarity=0.388  Sum_probs=155.1

Q ss_pred             CCCCcccceeeEEEEe-CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCLE-TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~-~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++||||+++++++.+ .+..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++||||
T Consensus       146 ~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDl  218 (373)
T 3c1x_A          146 DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET----HNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDL  218 (373)
T ss_dssp             TCCCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHHHCTT----CCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred             hCCCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHHhhcc----cCCCHHHHHHHHHHHHHHHHHHH---HCCEecCcc
Confidence            4789999999998764 457899999999999999997653    45788999999999999999999   899999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCc---ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGET---HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSD  155 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~  155 (239)
                      ||+||+++.++.+||+|||+++.......   .......+++.|+|||.+.+..++.++||||||+++|+|++ |..||.
T Consensus       219 kp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~  298 (373)
T 3c1x_A          219 AARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  298 (373)
T ss_dssp             CGGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCT
T ss_pred             chheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence            99999999999999999999875532211   11233456788999999998999999999999999999999 556664


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ......                     ......... ....+...+..+.+++.+||+.||.+|||+.|+++.|+++...
T Consensus       299 ~~~~~~---------------------~~~~~~~~~-~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~  356 (373)
T 3c1x_A          299 DVNTFD---------------------ITVYLLQGR-RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  356 (373)
T ss_dssp             TSCSSC---------------------HHHHHHTTC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CCCHHH---------------------HHHHHHcCC-CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            322110                     000000000 0000123456789999999999999999999999999999887


Q ss_pred             hc
Q 044155          236 LS  237 (239)
Q Consensus       236 ~~  237 (239)
                      +.
T Consensus       357 ~~  358 (373)
T 3c1x_A          357 FI  358 (373)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.5e-41  Score=266.59  Aligned_cols=209  Identities=23%  Similarity=0.303  Sum_probs=164.4

Q ss_pred             CCCCcccceeeEEEEeCCCc-eEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIP-ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~-~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++||||+++++++.+.... ++||||+.+++|.+++....    ..++...+..++.|++.||.|||   +.+++|+||
T Consensus        78 ~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~di  150 (298)
T 3pls_A           78 GLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQ----RNPTVKDLISFGLQVARGMEYLA---EQKFVHRDL  150 (298)
T ss_dssp             TCCCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHHHCTT----CCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred             hCCCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHHhccc----cCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCC
Confidence            47899999999999876655 89999999999999998643    56789999999999999999999   899999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCC---cceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGE---THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      ||+||+++.++.++|+|||++.......   ........+++.|+|||.+.+..++.++||||||+++|+|++|..|+..
T Consensus       151 kp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~  230 (298)
T 3pls_A          151 AARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYR  230 (298)
T ss_dssp             SGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTT
T ss_pred             CcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCc
Confidence            9999999999999999999987543221   1122344578899999999998999999999999999999997665432


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      ..+..                    +......... ....+...++.+.+++.+||+.||.+|||+.++++.|+++.+++
T Consensus       231 ~~~~~--------------------~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l  289 (298)
T 3pls_A          231 HIDPF--------------------DLTHFLAQGR-RLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSAL  289 (298)
T ss_dssp             TSCGG--------------------GHHHHHHTTC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             cCCHH--------------------HHHHHhhcCC-CCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHH
Confidence            21110                    0111110100 00111234567899999999999999999999999999998876


Q ss_pred             c
Q 044155          237 S  237 (239)
Q Consensus       237 ~  237 (239)
                      .
T Consensus       290 ~  290 (298)
T 3pls_A          290 L  290 (298)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=4.8e-41  Score=270.97  Aligned_cols=198  Identities=23%  Similarity=0.317  Sum_probs=158.2

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+++..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+||||
T Consensus        62 l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp  133 (323)
T 3tki_A           62 LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-----IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKP  133 (323)
T ss_dssp             CCCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGSBTT-----TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSG
T ss_pred             CCCCCCCeEEEEEecCCeEEEEEEcCCCCcHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccccch
Confidence            68999999999999999999999999999999999765     56899999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      +||+++.++.+||+|||++....... ........|++.|+|||++.+..+ +.++||||||+++|+|++|..||.....
T Consensus       134 ~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  213 (323)
T 3tki_A          134 ENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD  213 (323)
T ss_dssp             GGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCT
T ss_pred             HHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCch
Confidence            99999999999999999987553222 122335678999999999987765 7789999999999999999999864332


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .....       .             ...............+..+.+++.+||+.||.+|||+.|+++
T Consensus       214 ~~~~~-------~-------------~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~  261 (323)
T 3tki_A          214 SCQEY-------S-------------DWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKK  261 (323)
T ss_dssp             TSHHH-------H-------------HHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             HHHHH-------H-------------HHhcccccCCccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence            11100       0             000000000011234566789999999999999999999975

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=268.67  Aligned_cols=196  Identities=20%  Similarity=0.279  Sum_probs=160.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        70 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlk  141 (326)
T 2y0a_A           70 EIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-----ESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLK  141 (326)
T ss_dssp             HCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTTS-----SCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred             hCCCCCCCcEEEEEEeCCEEEEEEEcCCCCCHHHHHHhc-----CCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCC
Confidence            368999999999999999999999999999999999764     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCC----ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEEN----VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+||+++.++    .+||+|||++.......  ......||+.|+|||++.+..++.++||||||+++|+|++|..||..
T Consensus       142 p~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~  219 (326)
T 2y0a_A          142 PENIMLLDRNVPKPRIKIIDFGLAHKIDFGN--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG  219 (326)
T ss_dssp             GGGEEESCSSSSSCCEEECCCTTCEECCTTS--CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHEEEecCCCCCCCEEEEECCCCeECCCCC--ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCC
Confidence            9999999887    79999999987654322  12345689999999999988899999999999999999999999853


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcC--CCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED--VSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                     .+.........  .........+..+.++|.+||..||.+|||+.|+++
T Consensus       220 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          220 DTK---------------------QETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             SSH---------------------HHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CCH---------------------HHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            221                     01111111111  111122244577899999999999999999999986

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=2.1e-40  Score=266.50  Aligned_cols=192  Identities=21%  Similarity=0.355  Sum_probs=159.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +++++|||||
T Consensus        62 ~l~hp~Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlk  133 (318)
T 1fot_A           62 IVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS-----QRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLK  133 (318)
T ss_dssp             SCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHT-----SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCC
T ss_pred             hCCCCCCceEeEEEEeCCEEEEEEeCCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence            478999999999999999999999999999999999875     56899999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.+||+|||++......    .....||+.|+|||++.+..++.++|+||||+++|+|++|..||..... 
T Consensus       134 p~NIll~~~g~~kL~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-  208 (318)
T 1fot_A          134 PENILLDKNGHIKITDFGFAKYVPDV----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT-  208 (318)
T ss_dssp             GGGEEECTTSCEEECCCSSCEECSSC----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-
T ss_pred             hheEEEcCCCCEEEeecCcceecCCc----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH-
Confidence            99999999999999999998765332    2355789999999999998999999999999999999999999853221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                          .+....+.......  +...+..+.+++.+||..||++||     +++++++
T Consensus       209 --------------------~~~~~~i~~~~~~~--p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          209 --------------------MKTYEKILNAELRF--PPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             --------------------HHHHHHHHHCCCCC--CTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             --------------------HHHHHHHHhCCCCC--CCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence                                11111222211111  123456789999999999999999     8888874

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=4.1e-41  Score=275.21  Aligned_cols=199  Identities=20%  Similarity=0.283  Sum_probs=149.6

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +++++||||||
T Consensus        73 l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp  144 (361)
T 3uc3_A           73 LRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNA-----GRFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKL  144 (361)
T ss_dssp             CCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCG
T ss_pred             CCCCCCCcEEEEEeeCCEEEEEEEeCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCH
Confidence            78999999999999999999999999999999999765     56899999999999999999999   89999999999


Q ss_pred             cceeecCCCc--eeEcccccccccCCCCcceeecccccccccCccccccCCcccc-cchhhhhhHHHHHhcCCCCccccc
Q 044155           82 SCILFNEENV--AKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEK-SNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        82 ~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~-~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      +||+++.++.  +||+|||++......  .......||+.|+|||++.+..++.+ +||||||+++|+|++|..||....
T Consensus       145 ~Nill~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~  222 (361)
T 3uc3_A          145 ENTLLDGSPAPRLKICDFGYSKSSVLH--SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPE  222 (361)
T ss_dssp             GGEEECSSSSCCEEECCCCCC-----------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC---
T ss_pred             HHEEEcCCCCceEEEeecCcccccccc--CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCc
Confidence            9999987765  999999998643222  12234568999999999988777655 899999999999999999986543


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .....                 ..............+.....++.+.++|.+||..||.+|||+.|+++
T Consensus       223 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~  274 (361)
T 3uc3_A          223 EPRDY-----------------RKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPEIKT  274 (361)
T ss_dssp             -CCCH-----------------HHHHHHHHTTCCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             cHHHH-----------------HHHHHHHhcCCCCCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence            21111                 11111111111111111134567889999999999999999999986

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=3.8e-41  Score=266.36  Aligned_cols=204  Identities=23%  Similarity=0.341  Sum_probs=159.3

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+ +..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +++++|+||||
T Consensus        70 l~h~~i~~~~~~~~~-~~~~~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp  141 (281)
T 3cc6_A           70 LDHPHIVKLIGIIEE-EPTWIIMELYPYGELGHYLERNK----NSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAV  141 (281)
T ss_dssp             HCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSG
T ss_pred             CCCCCcceEEEEEcC-CCCEEEEecCCCCCHHHHHHhcc----ccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCcc
Confidence            689999999999865 45689999999999999997643    45889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~~  160 (239)
                      +||+++.++.++|+|||++...............+++.|+|||.+.+..++.++||||||+++|+|++ |..||......
T Consensus       142 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~  221 (281)
T 3cc6_A          142 RNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK  221 (281)
T ss_dssp             GGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG
T ss_pred             ceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH
Confidence            99999999999999999987654333222334456788999999988889999999999999999998 98888532211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      .                  ....+.   .... ...+...++.+.+++.+||+.||.+|||+.|+++.|+++...
T Consensus       222 ~------------------~~~~~~---~~~~-~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~  274 (281)
T 3cc6_A          222 D------------------VIGVLE---KGDR-LPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQM  274 (281)
T ss_dssp             G------------------HHHHHH---HTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             H------------------HHHHHh---cCCC-CCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence            0                  000010   0000 001113456788999999999999999999999999988753

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.9e-40  Score=273.64  Aligned_cols=197  Identities=23%  Similarity=0.331  Sum_probs=157.2

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+....++||||+++|+|.+++...     ..+++..++.++.||+.||.|||   +++|+||||||+
T Consensus       111 ~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~  182 (396)
T 4dc2_A          111 NHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ-----RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLD  182 (396)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGG
T ss_pred             CCCCcCeeEEEEEECCEEEEEEEcCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHH
Confidence            7999999999999999999999999999999999875     56899999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      |||++.++.+||+|||+++..... ........||+.|+|||++.+..++.++|+||||+++|+|++|..||........
T Consensus       183 NILl~~~g~ikL~DFGla~~~~~~-~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~  261 (396)
T 4dc2_A          183 NVLLDSEGHIKLTDYGMCKEGLRP-GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDN  261 (396)
T ss_dssp             GEEECTTSCEEECCCTTCBCCCCT-TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC---
T ss_pred             HEEECCCCCEEEeecceeeecccC-CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccc
Confidence            999999999999999998753221 1234466799999999999999999999999999999999999999964332111


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                      ..            ..........+.......  +...+..+.++|.+||+.||.+||++
T Consensus       262 ~~------------~~~~~~~~~~i~~~~~~~--p~~~s~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          262 PD------------QNTEDYLFQVILEKQIRI--PRSLSVKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             ---------------CCHHHHHHHHHHCCCCC--CTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred             cc------------hhhHHHHHHHHhccccCC--CCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence            10            001111222222222111  12355678999999999999999996

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=2.9e-41  Score=265.55  Aligned_cols=198  Identities=26%  Similarity=0.440  Sum_probs=152.2

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC---eeecc
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP---IVFRN   78 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~---i~H~d   78 (239)
                      ++||||+++++++.+.+..++||||+++++|.+++..      ..++...+..++.|++.||.|||   +.+   ++|+|
T Consensus        63 l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~------~~~~~~~~~~i~~~l~~~l~~lH---~~~~~~i~H~d  133 (271)
T 3dtc_A           63 LKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSG------KRIPPDILVNWAVQIARGMNYLH---DEAIVPIIHRD  133 (271)
T ss_dssp             CCCTTBCCEEEEECCC--CEEEEECCTTEEHHHHHTS------SCCCHHHHHHHHHHHHHHHHHHH---HSSSSCCCCSC
T ss_pred             cCCCCEeeEEEEEecCCceEEEEEcCCCCCHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHH---hCCCCceeecC
Confidence            6899999999999999999999999999999998854      56889999999999999999999   777   99999


Q ss_pred             ccCcceeecC--------CCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcC
Q 044155           79 FKTSCILFNE--------ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG  150 (239)
Q Consensus        79 lk~~nil~~~--------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g  150 (239)
                      |||+||+++.        ++.++|+|||.+.......   .....|++.|+|||.+.+..++.++||||||+++|+|++|
T Consensus       134 ikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g  210 (271)
T 3dtc_A          134 LKSSNILILQKVENGDLSNKILKITDFGLAREWHRTT---KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTG  210 (271)
T ss_dssp             CSGGGEEESSCCSSSCCSSCCEEECCCCC----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHC
T ss_pred             CchHHEEEecccccccccCcceEEccCCccccccccc---ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhC
Confidence            9999999986        6779999999987553322   2244689999999999988899999999999999999999


Q ss_pred             CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 044155          151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR  230 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~  230 (239)
                      ..||......                     ...............+...++.+.+++.+||+.||.+|||+.|+++.|+
T Consensus       211 ~~p~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~  269 (271)
T 3dtc_A          211 EVPFRGIDGL---------------------AVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLT  269 (271)
T ss_dssp             CCTTTTSCHH---------------------HHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCCCCCCHH---------------------HHHHhhhcCCCCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHh
Confidence            9998643211                     0011111111111111244567899999999999999999999999997


Q ss_pred             HH
Q 044155          231 QI  232 (239)
Q Consensus       231 ~l  232 (239)
                      ++
T Consensus       270 ~l  271 (271)
T 3dtc_A          270 TI  271 (271)
T ss_dssp             C-
T ss_pred             cC
Confidence            64

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=1.6e-40  Score=263.49  Aligned_cols=200  Identities=26%  Similarity=0.444  Sum_probs=157.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC--eeecc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP--IVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~--i~H~d   78 (239)
                      +++||||+++++++.+..  ++||||+++++|.+.+....    ..+++..+..++.|++.||.|||   +.+  ++|+|
T Consensus        79 ~l~h~~i~~~~~~~~~~~--~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~d  149 (287)
T 4f0f_A           79 NLNHPNIVKLYGLMHNPP--RMVMEFVPCGDLYHRLLDKA----HPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRD  149 (287)
T ss_dssp             TCCCTTBCCEEEEETTTT--EEEEECCTTCBHHHHHHCTT----SCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSC
T ss_pred             hCCCCCchhhheeecCCC--eEEEEecCCCCHHHHHhccc----CCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCC
Confidence            478999999999986554  79999999999999887653    56899999999999999999999   888  99999


Q ss_pred             ccCcceeecCCCc-----eeEcccccccccCCCCcceeecccccccccCccccc--cCCcccccchhhhhhHHHHHhcCC
Q 044155           79 FKTSCILFNEENV-----AKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR--TGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        79 lk~~nil~~~~~~-----~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~--~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      |||+||+++.++.     ++|+|||++.....    ......|++.|+|||++.  ...++.++||||||+++|+|++|.
T Consensus       150 ikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~  225 (287)
T 4f0f_A          150 LRSPNIFLQSLDENAPVCAKVADFGLSQQSVH----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGE  225 (287)
T ss_dssp             CSGGGEEESCCCTTCSCCEEECCCTTCBCCSS----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSS
T ss_pred             CCcceEEEeccCCCCceeEEeCCCCccccccc----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCC
Confidence            9999999988776     99999999864432    234566899999999984  445788999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||........                   ...............+...++.+.+++.+||+.||.+|||++++++.|++
T Consensus       226 ~pf~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~  286 (287)
T 4f0f_A          226 GPFDEYSYGKI-------------------KFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSE  286 (287)
T ss_dssp             CTTTTCCCCHH-------------------HHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             CCCccccccHH-------------------HHHHHHhccCCCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence            99864321100                   00111111111111122445778999999999999999999999999976


Q ss_pred             H
Q 044155          232 I  232 (239)
Q Consensus       232 l  232 (239)
                      +
T Consensus       287 l  287 (287)
T 4f0f_A          287 L  287 (287)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-40  Score=266.35  Aligned_cols=224  Identities=18%  Similarity=0.178  Sum_probs=164.8

Q ss_pred             CCCCcccceeeEEEEeCC--CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLETP--IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~--~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++....  ..++||||+++++|.+++......  ..+++..+..++.|++.||.|||   +.+++|+|
T Consensus        63 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~D  137 (319)
T 4euu_A           63 KLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNA--YGLPESEFLIVLRDVVGGMNHLR---ENGIVHRN  137 (319)
T ss_dssp             HCCCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHSGGGT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECSC
T ss_pred             hcCCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHH---HCCEecCC
Confidence            368999999999998765  678999999999999999865321  33899999999999999999999   89999999


Q ss_pred             ccCcceee----cCCCceeEcccccccccCCCCcceeecccccccccCccccc--------cCCcccccchhhhhhHHHH
Q 044155           79 FKTSCILF----NEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR--------TGVFNEKSNVFSFSVFLFE  146 (239)
Q Consensus        79 lk~~nil~----~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~--------~~~~~~~~Di~slG~~l~~  146 (239)
                      |||+||++    +.++.+||+|||++........  .....|++.|+|||++.        +..++.++||||||+++|+
T Consensus       138 lkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~e  215 (319)
T 4euu_A          138 IKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ--FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYH  215 (319)
T ss_dssp             CSGGGEEEEECTTSCEEEEECCCTTCEECCTTCC--BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHH
T ss_pred             CCHHHEEEeccCCCCceEEEccCCCceecCCCCc--eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHH
Confidence            99999999    7777899999999976543322  23456899999999886        4678899999999999999


Q ss_pred             HhcCCCCcccccccccccccchhhhhhhhhccchhh---h----hhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCC
Q 044155          147 LLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTE---I----VDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       147 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R  219 (239)
                      |++|..||....................... .+..   .    ......-..........+..+.+++.+||+.||++|
T Consensus       216 l~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R  294 (319)
T 4euu_A          216 AATGSLPFRPFEGPRRNKEVMYKIITGKPSG-AISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKC  294 (319)
T ss_dssp             HHHSSCSEECTTCGGGCHHHHHHHHHHCCTT-CCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTS
T ss_pred             HHhCCCCCCCCCccchhHHHHHHHhcCCCcc-cchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhh
Confidence            9999999975443222111111111110000 0000   0    000000001111224677889999999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 044155          220 PSMVDVAKKLRQI  232 (239)
Q Consensus       220 ps~~ell~~L~~l  232 (239)
                      ||++|+++...+-
T Consensus       295 ~s~~ell~h~~d~  307 (319)
T 4euu_A          295 WGFDQFFAETSDI  307 (319)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             ccHHHhhhccHHH
Confidence            9999999987653

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=4.9e-41  Score=270.33  Aligned_cols=220  Identities=23%  Similarity=0.369  Sum_probs=166.7

Q ss_pred             CCCCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++.+.  ...++||||+++++|.+++..      ..++...+..++.|++.||.|||   +.+++|+|
T Consensus        89 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~------~~~~~~~~~~i~~~l~~~l~~LH---~~~ivH~D  159 (318)
T 3lxp_A           89 TLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPR------HSIGLAQLLLFAQQICEGMAYLH---AQHYIHRD  159 (318)
T ss_dssp             HCCCTTBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGGG------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSC
T ss_pred             hCCCcchhhEEEEEecCCCceEEEEEecccCCcHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCC
Confidence            37899999999999874  467899999999999999976      34889999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||+||+++.++.++|+|||++........  .......++..|+|||++.+..++.++||||||+++|+|++|..||..
T Consensus       160 ikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~  239 (318)
T 3lxp_A          160 LAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQS  239 (318)
T ss_dssp             CSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGS
T ss_pred             CchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccc
Confidence            999999999999999999999987644322  123344578889999999988899999999999999999999998864


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      .........      ............. ...........+...+..+.++|.+||+.||.+|||+.|+++.|+++.+.+
T Consensus       240 ~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  312 (318)
T 3lxp_A          240 PPTKFLELI------GIAQGQMTVLRLT-ELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKY  312 (318)
T ss_dssp             HHHHHHHHH------CSCCHHHHHHHHH-HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhh------cccccchhHHHHH-HHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhh
Confidence            321100000      0000000001111 111111111112345678999999999999999999999999999998765

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=1.7e-40  Score=274.20  Aligned_cols=221  Identities=16%  Similarity=0.195  Sum_probs=158.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++.....   ..++...+..++.|++.||.|||   +.+|+|||||
T Consensus        82 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlk  155 (389)
T 3gni_B           82 LFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFM---DGMNELAIAYILQGVLKALDYIH---HMGYVHRSVK  155 (389)
T ss_dssp             HCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTCT---TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCCCcEeEEEEECCEEEEEEEccCCCCHHHHHhhhcc---cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            36899999999999999999999999999999999987643   56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC------cceeecccccccccCcccccc--CCcccccchhhhhhHHHHHhcCCC
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE------THITDTVMGTLGYCAPEYMRT--GVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      |+|||++.++.+||+|||.+.......      ........|++.|+|||++.+  ..++.++||||||+++|+|++|..
T Consensus       156 p~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~  235 (389)
T 3gni_B          156 ASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHV  235 (389)
T ss_dssp             GGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCC
Confidence            999999999999999999875432111      111223468899999999987  578999999999999999999999


Q ss_pred             Ccccccccccccccchhhhhhhhhc------------------cchhhhhhhhh-----hcCCCcHHHHHHHHHHHHHHh
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFED------------------NRFTEIVDHIV-----VEDVSSIEKEQQLHASAQVTF  209 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~li~  209 (239)
                      ||.......................                  ....+......     ............++.+.+||.
T Consensus       236 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~  315 (389)
T 3gni_B          236 PFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVE  315 (389)
T ss_dssp             TTTTCCSTTHHHHC--------------------------------------------------------CCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHhcCCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHH
Confidence            9975433221111000000000000                  00000000000     000001122345677999999


Q ss_pred             hhcCCCCCCCCCHHHHHH
Q 044155          210 ECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       210 ~cl~~dp~~Rps~~ell~  227 (239)
                      +||+.||.+|||+.|+++
T Consensus       316 ~~L~~dP~~Rpta~ell~  333 (389)
T 3gni_B          316 QCLQRNPDARPSASTLLN  333 (389)
T ss_dssp             HHTCSCTTTSCCHHHHTT
T ss_pred             HHhhcCcccCCCHHHHhc
Confidence            999999999999999985

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=289.12  Aligned_cols=207  Identities=24%  Similarity=0.370  Sum_probs=162.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.. ...++||||+++|+|.+++....    ..+++..+..++.|++.||.|||   +++|+|||||
T Consensus       392 ~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~L~~~l~~~~----~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlk  463 (613)
T 2ozo_A          392 QLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVGKR----EEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLA  463 (613)
T ss_dssp             TCCCTTBCCEEEEEES-SSEEEEEECCTTCBHHHHHTTCT----TTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             hCCCCCEeeEEEEecc-CCeEEEEEeCCCCcHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCC
Confidence            4799999999999976 56899999999999999997543    56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+|||++.++.+||+|||+++.......  .......+++.|+|||++.+..++.++||||||+++|||++ |..||...
T Consensus       464 p~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~  543 (613)
T 2ozo_A          464 ARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM  543 (613)
T ss_dssp             GGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             HHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            9999999999999999999976533221  11223345688999999998999999999999999999998 98888643


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhhc
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLS  237 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~~  237 (239)
                      ...                     +....+..+. ....+...+..+.++|.+||+.||.+|||+.++++.|+.++.++.
T Consensus       544 ~~~---------------------~~~~~i~~~~-~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~  601 (613)
T 2ozo_A          544 KGP---------------------EVMAFIEQGK-RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLA  601 (613)
T ss_dssp             CSH---------------------HHHHHHHTTC-CCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHS
T ss_pred             CHH---------------------HHHHHHHcCC-CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhc
Confidence            311                     1111111111 111112456788999999999999999999999999999887653

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=7.7e-40  Score=264.31  Aligned_cols=179  Identities=22%  Similarity=0.332  Sum_probs=140.2

Q ss_pred             ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEccccc
Q 044155           20 PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSL   99 (239)
Q Consensus        20 ~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~   99 (239)
                      .++||||+++++|.+++......  ...+...+..++.|++.||+|||   +++++|+||||+||+++.++.+||+|||+
T Consensus       136 ~~lv~e~~~~~~L~~~~~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~  210 (332)
T 3qd2_B          136 LYIQMQLCRKENLKDWMNRRCSL--EDREHGVCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGL  210 (332)
T ss_dssp             EEEEEECCCSSCHHHHHHTCCSG--GGSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             EEEEEEecCCCCHHHHHhcccCc--cchhhHHHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCc
Confidence            68999999999999999875432  44567778999999999999999   89999999999999999999999999999


Q ss_pred             ccccCCCCc-----------ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccccccccch
Q 044155          100 SISIPEGET-----------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFS  168 (239)
Q Consensus       100 ~~~~~~~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~  168 (239)
                      +........           .......||+.|+|||++.+..++.++||||||+++|+|++|..|+...           
T Consensus       211 a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~-----------  279 (332)
T 3qd2_B          211 VTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER-----------  279 (332)
T ss_dssp             CEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH-----------
T ss_pred             ccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH-----------
Confidence            876643321           1123456899999999999989999999999999999999986653210           


Q ss_pred             hhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          169 EYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                  .......... ..+......++.+.+++.+||+.||.+|||++|+++
T Consensus       280 ------------~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          280 ------------VRIITDVRNL-KFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE  325 (332)
T ss_dssp             ------------HHHHHHHHTT-CCCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred             ------------HHHHHHhhcc-CCCcccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence                        0111111111 222333456677899999999999999999999986

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=7.6e-41  Score=268.47  Aligned_cols=216  Identities=19%  Similarity=0.193  Sum_probs=158.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||++ ++|.+.+....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        75 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dik  146 (311)
T 3niz_A           75 ELHHPNIVSLIDVIHSERCLTLVFEFME-KDLKKVLDENK----TGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLK  146 (311)
T ss_dssp             HCCCTTBCCEEEEECCSSCEEEEEECCS-EEHHHHHHTCT----TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred             HcCCCCEeeeeeEEccCCEEEEEEcCCC-CCHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCc
Confidence            3789999999999999999999999998 68988887653    45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||++....... .......+|+.|+|||++.+ ..++.++||||||+++|+|++|..||.....
T Consensus       147 p~NIl~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  225 (311)
T 3niz_A          147 PQNLLINSDGALKLADFGLARAFGIPV-RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTD  225 (311)
T ss_dssp             GGGEEECTTCCEEECCCTTCEETTSCC-C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSST
T ss_pred             hHhEEECCCCCEEEccCcCceecCCCc-ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCCh
Confidence            999999999999999999987653222 12334567999999999876 5689999999999999999999999975443


Q ss_pred             cccccccchhhhhhhhhccchhhhhh------hh---hhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVD------HI---VVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ........... ..+ ....+.....      ..   .............++++.+++.+||+.||.+|||++|+++
T Consensus       226 ~~~~~~i~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          226 DDQLPKIFSIL-GTP-NPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             TTHHHHHHHHH-CCC-CTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHHHHHHHHHH-CCC-ChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            22211100000 000 0000000000      00   0000000011134567889999999999999999999986

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=9.1e-41  Score=266.25  Aligned_cols=208  Identities=23%  Similarity=0.381  Sum_probs=161.1

Q ss_pred             CCCCcccceeeEEEE-eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCL-ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~-~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++||||+++++++. .++..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +++++|+||
T Consensus        82 ~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~di  154 (298)
T 3f66_A           82 DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET----HNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDL  154 (298)
T ss_dssp             TCCCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHHHCTT----CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred             hCCCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCC
Confidence            478999999999965 4557889999999999999997643    56789999999999999999999   899999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCc---ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCC-Ccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGET---HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWD-VSD  155 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~-p~~  155 (239)
                      ||+||+++.++.++|+|||++........   .......+|+.|+|||.+.+..++.++||||||+++|++++|.. ||.
T Consensus       155 kp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~  234 (298)
T 3f66_A          155 AARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  234 (298)
T ss_dssp             SGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             chheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCc
Confidence            99999999999999999999876533221   12234457788999999998899999999999999999999554 443


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      .....                     +.......... ...+...+..+.+++.+||+.||.+|||+.|+++.|+++..+
T Consensus       235 ~~~~~---------------------~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~  292 (298)
T 3f66_A          235 DVNTF---------------------DITVYLLQGRR-LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  292 (298)
T ss_dssp             TSCTT---------------------THHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             cCCHH---------------------HHHHHHhcCCC-CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            22110                     00000111000 000113346789999999999999999999999999999886


Q ss_pred             hc
Q 044155          236 LS  237 (239)
Q Consensus       236 ~~  237 (239)
                      +.
T Consensus       293 ~~  294 (298)
T 3f66_A          293 FI  294 (298)
T ss_dssp             SC
T ss_pred             hc
Confidence            53

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=6.6e-41  Score=291.56  Aligned_cols=206  Identities=21%  Similarity=0.319  Sum_probs=163.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.. ...++||||+++|+|.+++...     ..+++..+..++.||+.||.|||   +++|+|||||
T Consensus       426 ~l~hpnIv~l~~~~~~-~~~~lv~E~~~~g~L~~~l~~~-----~~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLk  496 (635)
T 4fl3_A          426 QLDNPYIVRMIGICEA-ESWMLVMEMAELGPLNKYLQQN-----RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLA  496 (635)
T ss_dssp             HCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHHHC-----TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             hCCCCCEeeEEEEEec-CCEEEEEEccCCCCHHHHHhhC-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCC
Confidence            3789999999999964 5578999999999999999865     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+|||++.++.+||+|||+++.......  .......+|+.|+|||++.+..++.++||||||+++|||++ |..||...
T Consensus       497 p~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~  576 (635)
T 4fl3_A          497 ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM  576 (635)
T ss_dssp             GGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             hHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999876643321  12233446788999999998899999999999999999998 99998543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhhc
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLS  237 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~~  237 (239)
                      ..                     .+....+.... ....+...+..+.++|..||+.||.+|||+.+|++.|++++.++.
T Consensus       577 ~~---------------------~~~~~~i~~~~-~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l~  634 (635)
T 4fl3_A          577 KG---------------------SEVTAMLEKGE-RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVV  634 (635)
T ss_dssp             CH---------------------HHHHHHHHTTC-CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHC
T ss_pred             CH---------------------HHHHHHHHcCC-CCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHhc
Confidence            31                     11111111111 111112456788999999999999999999999999999988764

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.8e-41  Score=270.53  Aligned_cols=205  Identities=19%  Similarity=0.318  Sum_probs=157.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..+. .++|++++.+++|.+++....    ..++...+..++.|++.||.|||   +++++|+|||
T Consensus        73 ~l~hp~iv~~~~~~~~~~-~~~v~~~~~~g~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik  144 (327)
T 3lzb_A           73 SVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHK----DNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLA  144 (327)
T ss_dssp             TCCBTTBCCCCEEEESSS-EEEEECCCSSCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCCeeEEEEEEecCC-ceEEEEecCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCC
Confidence            478999999999998765 788999999999999998753    56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.+||+|||++........ .......+|+.|+|||.+.+..++.++||||||+++|+|++ |..||....
T Consensus       145 p~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~  224 (327)
T 3lzb_A          145 ARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP  224 (327)
T ss_dssp             GGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             HHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence            9999999999999999999876533221 12233446788999999999999999999999999999999 988886432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ...                  ....+..    ......+...+..+.+++.+||+.||.+|||+.|+++.|+++...
T Consensus       225 ~~~------------------~~~~~~~----~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  279 (327)
T 3lzb_A          225 ASE------------------ISSILEK----GERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             GGG------------------HHHHHHT----TCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred             HHH------------------HHHHHHc----CCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence            110                  0111111    111111123456788999999999999999999999999998753

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=267.03  Aligned_cols=208  Identities=24%  Similarity=0.393  Sum_probs=155.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.  +..++||||+++++|.+++......  ..++...+..++.|++.||.|||....++++|+|||
T Consensus        57 ~l~hp~iv~~~~~~~--~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlk  132 (307)
T 2eva_A           57 RVNHPNIVKLYGACL--NPVCLVMEYAEGGSLYNVLHGAEPL--PYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLK  132 (307)
T ss_dssp             HCCCTTBCCEEEBCT--TTTEEEEECCTTCBHHHHHHCSSSE--ECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCS
T ss_pred             cCCCCCcCeEEEEEc--CCcEEEEEcCCCCCHHHHHhccCCC--CccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCC
Confidence            368999999999876  4579999999999999999865321  347888999999999999999992111899999999


Q ss_pred             CcceeecCCCc-eeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENV-AKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~-~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++. +||+|||++......    .....|++.|+|||++.+..++.++||||||+++|+|++|..||.....
T Consensus       133 p~NIll~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~  208 (307)
T 2eva_A          133 PPNLLLVAGGTVLKICDFGTACDIQTH----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGG  208 (307)
T ss_dssp             GGGEEEETTTTEEEECCCCC----------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCS
T ss_pred             hhHEEEeCCCCEEEEcccccccccccc----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCc
Confidence            99999998886 799999998654322    2234589999999999988999999999999999999999999864321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      ...                   .......... ........+..+.+++.+||+.||.+|||++++++.|+++....
T Consensus       209 ~~~-------------------~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  265 (307)
T 2eva_A          209 PAF-------------------RIMWAVHNGT-RPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF  265 (307)
T ss_dssp             SHH-------------------HHHHHHHTTC-CCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred             cHH-------------------HHHHHHhcCC-CCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence            100                   0000000000 00011234567889999999999999999999999999987654

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=4.2e-41  Score=267.24  Aligned_cols=209  Identities=22%  Similarity=0.413  Sum_probs=152.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++ .....++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        76 ~l~h~~iv~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlk  147 (289)
T 3og7_A           76 KTRHVNILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHASE----TKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLK  147 (289)
T ss_dssp             TCCCTTBCCEEEEE-CSSSCEEEEECCCEEEHHHHHTTC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCcEEEEEeec-cCCccEEEEEecCCCcHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCc
Confidence            47899999999965 5566899999999999999996543    56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCC-CcceeecccccccccCccccc---cCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEG-ETHITDTVMGTLGYCAPEYMR---TGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+||+++.++.++|+|||++...... .........|++.|+|||.+.   +..++.++||||||+++|+|++|..||..
T Consensus       148 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  227 (289)
T 3og7_A          148 SNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSN  227 (289)
T ss_dssp             GGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSS
T ss_pred             cceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccc
Confidence            99999999999999999998654321 112233456899999999986   55688899999999999999999999864


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      .......        .         ...................++.+.+++.+||+.||.+|||+.++++.|+++.+
T Consensus       228 ~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          228 INNRDQI--------I---------EMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             CCCHHHH--------H---------HHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             cchHHHH--------H---------HHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence            3321110        0         00000000000000112345678999999999999999999999999998764

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=265.59  Aligned_cols=196  Identities=18%  Similarity=0.266  Sum_probs=154.1

Q ss_pred             CCCCcccceeeEEEEe--CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLE--TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~--~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++.+  ....++||||+++++|.+++..      ..+++..+..++.|++.||.|||   +.+++|+|
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~D  162 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL------KPLSEDQARFYFQDLIKGIEYLH---YQKIIHRD  162 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCC
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccC
Confidence            4789999999999986  4578999999999999876543      56899999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC---cccccchhhhhhHHHHHhcCCCCcc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV---FNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |||+||+++.++.+||+|||++....... .......||+.|+|||.+.+..   .+.++||||||+++|+|++|..||.
T Consensus       163 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  241 (298)
T 2zv2_A          163 IKPSNLLVGEDGHIKIADFGVSNEFKGSD-ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFM  241 (298)
T ss_dssp             CCGGGEEECTTSCEEECCCTTCEECSSSS-CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCHHHEEECCCCCEEEecCCCcccccccc-ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCC
Confidence            99999999999999999999987654332 2233457899999999998655   4778999999999999999999985


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                     ....................++.+.+++.+||+.||.+|||+.|+++
T Consensus       242 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          242 DERI---------------------MCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             CSSH---------------------HHHHHHHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CccH---------------------HHHHHHHhcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence            3211                     01111111111111111134567899999999999999999999875

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=9.7e-41  Score=269.03  Aligned_cols=211  Identities=20%  Similarity=0.359  Sum_probs=156.7

Q ss_pred             CCCCcccceeeEEEEeCCCc------eEEEEEccCCChhhhhhcCCC-CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC
Q 044155            1 QMSHNHILKLIGCCLETPIP------ILVFESVQYGTLWDRILGAPQ-PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP   73 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~------~iv~e~~~~~sL~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~   73 (239)
                      +++||||+++++++......      ++||||+++++|.+++..... .....++...+..++.|++.||.|||   +.+
T Consensus        81 ~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~  157 (323)
T 3qup_A           81 EFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRN  157 (323)
T ss_dssp             TCCCTTBCCCCEEEECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred             HCCCCceehhhceeeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCC
Confidence            47899999999999877654      899999999999999875422 11135889999999999999999999   899


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CC
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GW  151 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~  151 (239)
                      ++|+||||+||+++.++.+||+|||++........ .......+++.|+|||.+.+..++.++||||||+++|+|++ |.
T Consensus       158 ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~  237 (323)
T 3qup_A          158 FIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQ  237 (323)
T ss_dssp             CCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             cccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCC
Confidence            99999999999999999999999999876533221 12233446788999999998899999999999999999999 88


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||......                     +.......... ...+...+..+.+++.+||+.||.+|||+.++++.|++
T Consensus       238 ~p~~~~~~~---------------------~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~  295 (323)
T 3qup_A          238 TPYAGIENA---------------------EIYNYLIGGNR-LKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELEN  295 (323)
T ss_dssp             CTTTTCCGG---------------------GHHHHHHTTCC-CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCccccChH---------------------HHHHHHhcCCC-CCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence            887643211                     11111111110 00112345678999999999999999999999999999


Q ss_pred             HHHhh
Q 044155          232 IYRSL  236 (239)
Q Consensus       232 l~~~~  236 (239)
                      +....
T Consensus       296 ~l~~~  300 (323)
T 3qup_A          296 ILGHL  300 (323)
T ss_dssp             HHHC-
T ss_pred             HHHHh
Confidence            88754

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=1.3e-40  Score=275.66  Aligned_cols=201  Identities=19%  Similarity=0.286  Sum_probs=152.2

Q ss_pred             CCCcccceeeEEEEe----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeec
Q 044155            2 MSHNHILKLIGCCLE----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFR   77 (239)
Q Consensus         2 l~H~niv~l~~~~~~----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~   77 (239)
                      .+||||+++++++..    ....++||||+++|+|.+++.....   ..+++..+..++.|++.||.|||   +.+|+||
T Consensus       112 ~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHr  185 (400)
T 1nxk_A          112 SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGD---QAFTEREASEIMKSIGEAIQYLH---SINIAHR  185 (400)
T ss_dssp             TTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC------CCBHHHHHHHHHHHHHHHHHHH---HTTEECC
T ss_pred             cCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccc
Confidence            479999999999875    5568999999999999999987532   46899999999999999999999   8999999


Q ss_pred             cccCcceeecC---CCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           78 NFKTSCILFNE---ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        78 dlk~~nil~~~---~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      ||||+|||++.   ++.+||+|||++.......  ......||+.|+|||++.+..++.++||||||+++|+|++|..||
T Consensus       186 Dlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf  263 (400)
T 1nxk_A          186 DVKPENLLYTSKRPNAILKLTDFGFAKETTSHN--SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPF  263 (400)
T ss_dssp             CCCGGGEEESSSSTTCCEEECCCTTCEECC-------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSC
T ss_pred             CcCcceEEEecCCCCccEEEEecccccccCCCC--ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCC
Confidence            99999999998   7889999999987653221  233556899999999999889999999999999999999999998


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...........                 ....+......  .......+..+.++|.+||+.||.+|||+.|+++
T Consensus       264 ~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~  321 (400)
T 1nxk_A          264 YSNHGLAISPG-----------------MKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  321 (400)
T ss_dssp             CCCTTCSSCCS-----------------HHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCCccccccHH-----------------HHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            65332111000                 00000111110  0001234567899999999999999999999987

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=8e-41  Score=264.18  Aligned_cols=207  Identities=22%  Similarity=0.361  Sum_probs=164.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++. .+..++||||+++++|.+++.....   ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        64 ~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dik  136 (279)
T 1qpc_A           64 QLQHQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSG---IKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLR  136 (279)
T ss_dssp             HCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHHHTTSHHH---HTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hCCCcCcceEEEEEc-CCCcEEEEecCCCCCHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence            368999999999986 4558899999999999999975321   25889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+...............++..|+|||.+.+..++.++||||||+++|+|++ |..||.....
T Consensus       137 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~  216 (279)
T 1qpc_A          137 AANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN  216 (279)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH
T ss_pred             HhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH
Confidence            999999999999999999987764433222334456788999999988889999999999999999999 8888754321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      .                     +........ .....+...+..+.+++.+||+.||.+|||+.++++.|+++....
T Consensus       217 ~---------------------~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  271 (279)
T 1qpc_A          217 P---------------------EVIQNLERG-YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT  271 (279)
T ss_dssp             H---------------------HHHHHHHTT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             H---------------------HHHHHHhcc-cCCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhc
Confidence            0                     111111110 000111234567899999999999999999999999999988764

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=1.3e-40  Score=268.72  Aligned_cols=210  Identities=21%  Similarity=0.312  Sum_probs=164.6

Q ss_pred             CC-CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC-----------CCCCcCCHHHHHHHHHHHHHHHhHHhh
Q 044155            1 QM-SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-----------PHFEPLLLKHRLKIAMDIVHALAYLHF   68 (239)
Q Consensus         1 ~l-~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~-----------~~~~~~~~~~~~~~~~~i~~~l~~LH~   68 (239)
                      ++ +||||+++++++.+.+..++||||+++++|.+++.....           .....++...+..++.|++.||.||| 
T Consensus        81 ~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH-  159 (327)
T 1fvr_A           81 KLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS-  159 (327)
T ss_dssp             TCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH-
T ss_pred             hccCCCchhhhceeeeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH-
Confidence            35 899999999999999999999999999999999986530           11146899999999999999999999 


Q ss_pred             CCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHh
Q 044155           69 GFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        69 ~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~  148 (239)
                        +++++|+||||+||+++.++.++|+|||++.....  ........+++.|+|||.+.+..++.++||||||+++|+|+
T Consensus       160 --~~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell  235 (327)
T 1fvr_A          160 --QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEV--YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV  235 (327)
T ss_dssp             --HTTEECSCCSGGGEEECGGGCEEECCTTCEESSCE--ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             --hCCccCCCCccceEEEcCCCeEEEcccCcCccccc--cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHH
Confidence              89999999999999999999999999999864321  11122344678899999998888999999999999999999


Q ss_pred             c-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          149 T-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       149 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      + |..||.....                     .+......... ....+...+..+.+++.+||+.||.+|||++++++
T Consensus       236 t~g~~pf~~~~~---------------------~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  293 (327)
T 1fvr_A          236 SLGGTPYCGMTC---------------------AELYEKLPQGY-RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILV  293 (327)
T ss_dssp             TTSCCTTTTCCH---------------------HHHHHHGGGTC-CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cCCCCCCCCCcH---------------------HHHHHHhhcCC-CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            8 9888854321                     01111111110 00011134567899999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 044155          228 KLRQIYRSLS  237 (239)
Q Consensus       228 ~L~~l~~~~~  237 (239)
                      .|.++..+..
T Consensus       294 ~L~~~~~~~~  303 (327)
T 1fvr_A          294 SLNRMLEERK  303 (327)
T ss_dssp             HHHHHHHSSS
T ss_pred             HHHHHHHhhc
Confidence            9999887654

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=3.5e-40  Score=264.69  Aligned_cols=211  Identities=24%  Similarity=0.426  Sum_probs=158.3

Q ss_pred             CCCCcccceeeEEEEeCC-----CceEEEEEccCCChhhhhhcCCC-CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETP-----IPILVFESVQYGTLWDRILGAPQ-PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~-----~~~iv~e~~~~~sL~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++.+..     ..++||||+++++|.+++..... .....++...+..++.|++.||.|||   +.++
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~i  168 (313)
T 3brb_A           92 DFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNF  168 (313)
T ss_dssp             TCCCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTC
T ss_pred             cCCCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCc
Confidence            478999999999998654     34899999999999999854321 11156899999999999999999999   9999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCC
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWD  152 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~  152 (239)
                      +|+||||+||+++.++.+||+|||++........ .......+++.|+|||.+.+..++.++||||||+++|+|++ |..
T Consensus       169 vH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~  248 (313)
T 3brb_A          169 LHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMT  248 (313)
T ss_dssp             CCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999876533221 12234456788999999998889999999999999999999 777


Q ss_pred             CcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      ||......                     ........... ...+...+..+.+++.+||+.||.+|||+.++++.|+++
T Consensus       249 p~~~~~~~---------------------~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l  306 (313)
T 3brb_A          249 PYPGVQNH---------------------EMYDYLLHGHR-LKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKL  306 (313)
T ss_dssp             SSTTCCGG---------------------GHHHHHHTTCC-CCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCccCCHH---------------------HHHHHHHcCCC-CCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            87543211                     11111111100 001123456789999999999999999999999999999


Q ss_pred             HHhh
Q 044155          233 YRSL  236 (239)
Q Consensus       233 ~~~~  236 (239)
                      ..++
T Consensus       307 ~~~l  310 (313)
T 3brb_A          307 LESL  310 (313)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            8875

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=1.3e-40  Score=272.40  Aligned_cols=196  Identities=23%  Similarity=0.353  Sum_probs=158.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+.+...     ..+++..+..++.|++.||.|||   +.+|+|+|||
T Consensus        84 ~l~hpnIv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlk  155 (362)
T 2bdw_A           84 KLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR-----EFYSEADASHCIQQILESIAYCH---SNGIVHRNLK  155 (362)
T ss_dssp             HCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTC-----SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCS
T ss_pred             hCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCc
Confidence            378999999999999999999999999999999999765     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCC---ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEEN---VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++   .+||+|||++.......  ......||+.|+|||++.+..++.++||||||+++|+|++|..||...
T Consensus       156 p~NIll~~~~~~~~~kl~DfG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~  233 (362)
T 2bdw_A          156 PENLLLASKAKGAAVKLADFGLAIEVNDSE--AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  233 (362)
T ss_dssp             GGGEEESCSSTTCCEEECCCTTCBCCTTCC--SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hHHEEEecCCCCCCEEEeecCcceEecCCc--ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            9999998654   59999999987654322  123456899999999999888999999999999999999999998542


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                     .+....+......  .......++.+.++|.+||+.||.+|||+.++++
T Consensus       234 ~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  284 (362)
T 2bdw_A          234 DQ---------------------HRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK  284 (362)
T ss_dssp             SH---------------------HHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             CH---------------------HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            21                     1111111111111  1111234567899999999999999999999886

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=5.2e-41  Score=271.66  Aligned_cols=210  Identities=18%  Similarity=0.320  Sum_probs=164.2

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC---------CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP---------HFEPLLLKHRLKIAMDIVHALAYLHFGFPRP   73 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~---------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~   73 (239)
                      +||||+++++++.+.+..++||||+++++|.+++......         ....++...+..++.|++.||.|||   +.+
T Consensus       108 ~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~  184 (333)
T 2i1m_A          108 QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKN  184 (333)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred             CCCCeeeEEEEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCC
Confidence            7999999999999999999999999999999998753210         0145789999999999999999999   899


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CC
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GW  151 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~  151 (239)
                      ++|+||||+||+++.++.++|+|||++....... ........+++.|+|||.+.+..++.++||||||+++|+|++ |.
T Consensus       185 ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~  264 (333)
T 2i1m_A          185 CIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGL  264 (333)
T ss_dssp             EECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred             cccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999987543222 122334456788999999998889999999999999999998 88


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||........                 .......    ......+...+..+.+++.+||+.||.+|||+.++++.|++
T Consensus       265 ~p~~~~~~~~~-----------------~~~~~~~----~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~  323 (333)
T 2i1m_A          265 NPYPGILVNSK-----------------FYKLVKD----GYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQE  323 (333)
T ss_dssp             CSSTTCCSSHH-----------------HHHHHHH----TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCCcccchhHH-----------------HHHHHhc----CCCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHH
Confidence            88754321100                 0011111    00000111234678899999999999999999999999999


Q ss_pred             HHHhh
Q 044155          232 IYRSL  236 (239)
Q Consensus       232 l~~~~  236 (239)
                      +..+.
T Consensus       324 ~~~~~  328 (333)
T 2i1m_A          324 QAQED  328 (333)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            87653

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.3e-40  Score=267.14  Aligned_cols=207  Identities=22%  Similarity=0.289  Sum_probs=160.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus       102 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik  174 (333)
T 1mqb_A          102 QFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKD----GEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLA  174 (333)
T ss_dssp             TCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTT----TCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCCCCcEEEEEecCCCcEEEEeCCCCCcHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence            4789999999999999999999999999999999997653    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.+||+|||++........  .......+++.|+|||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       175 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~  254 (333)
T 1mqb_A          175 ARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL  254 (333)
T ss_dssp             GGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             hheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccC
Confidence            9999999999999999999876533221  11223345778999999998889999999999999999999 98887533


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      ..                     .+......... ....+...+..+.+++.+||+.||.+|||+.++++.|+++....
T Consensus       255 ~~---------------------~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~  311 (333)
T 1mqb_A          255 SN---------------------HEVMKAINDGF-RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP  311 (333)
T ss_dssp             CH---------------------HHHHHHHHTTC-CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             CH---------------------HHHHHHHHCCC-cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence            21                     11111111110 00111234567899999999999999999999999999987653

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=2.2e-40  Score=268.19  Aligned_cols=209  Identities=21%  Similarity=0.345  Sum_probs=165.3

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +||||+++++++.+.+..++||||+++++|.+++......           ....++...+..++.|++.||.|||   +
T Consensus        99 ~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~  175 (334)
T 2pvf_A           99 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---S  175 (334)
T ss_dssp             CCTTBCCEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             cCCCEeeEEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---h
Confidence            7999999999999999999999999999999999865321           0134889999999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-  149 (239)
                      .+++|+||||+||+++.++.+||+|||++........ .......+++.|+|||++.+..++.++||||||+++|+|++ 
T Consensus       176 ~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~  255 (334)
T 2pvf_A          176 QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTL  255 (334)
T ss_dssp             TTEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTT
T ss_pred             CCeeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999876543321 12233456788999999988889999999999999999999 


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||.....                     .+.......... ...+...+..+.+++.+||+.||.+|||+.|+++.|
T Consensus       256 g~~p~~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  313 (334)
T 2pvf_A          256 GGSPYPGIPV---------------------EELFKLLKEGHR-MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  313 (334)
T ss_dssp             SCCSSTTCCH---------------------HHHHHHHHHTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCcCcCCH---------------------HHHHHHHhcCCC-CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            8888753221                     011111111100 001123456789999999999999999999999999


Q ss_pred             HHHHHhh
Q 044155          230 RQIYRSL  236 (239)
Q Consensus       230 ~~l~~~~  236 (239)
                      +++....
T Consensus       314 ~~l~~~~  320 (334)
T 2pvf_A          314 DRILTLT  320 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9987653

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=6e-40  Score=263.23  Aligned_cols=191  Identities=18%  Similarity=0.172  Sum_probs=153.3

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .+||||+++++++.+++..++||||+ +++|.+++....    ..+++..+..++.|++.||.|||   +.+++|+||||
T Consensus       114 ~~h~~iv~l~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp  185 (311)
T 3p1a_A          114 GQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAWG----ASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKP  185 (311)
T ss_dssp             CCCTTBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHHC----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred             cCCCcEEEEEEEEEeCCEEEEEEecc-CCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCH
Confidence            38999999999999999999999999 589999887653    46899999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.+||+|||++.......  ......||+.|+|||++.+ .++.++||||||+++|+|++|..|+.....  
T Consensus       186 ~NIll~~~~~~kl~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~--  260 (311)
T 3p1a_A          186 ANIFLGPRGRCKLGDFGLLVELGTAG--AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEG--  260 (311)
T ss_dssp             GGEEECGGGCEEECCCTTCEECC--------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHH--
T ss_pred             HHEEECCCCCEEEccceeeeecccCC--CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccH--
Confidence            99999999999999999987653322  2334558999999998875 789999999999999999999766532110  


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                        +    ................+..+.+++.+||+.||.+|||++|+++
T Consensus       261 ------------------~----~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          261 ------------------W----QQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             ------------------H----HHHTTTCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ------------------H----HHHhccCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence                              0    0111111112222345678899999999999999999999986

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=7e-40  Score=269.31  Aligned_cols=197  Identities=21%  Similarity=0.282  Sum_probs=158.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+.+|+|.+++...     ..++...+..++.|++.||.|||   +.+|+|||||
T Consensus        71 ~l~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlk  142 (384)
T 4fr4_A           71 GLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQN-----VHFKEETVKLFICELVMALDYLQ---NQRIIHRDMK  142 (384)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCc
Confidence            478999999999999999999999999999999999865     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc---CCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT---GVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++.......  ......||+.|+|||++..   ..++.++||||||+++|+|++|..||...
T Consensus       143 p~NIll~~~g~vkL~DFG~a~~~~~~~--~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~  220 (384)
T 4fr4_A          143 PDNILLDEHGHVHITDFNIAAMLPRET--QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIR  220 (384)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECCTTC--CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCC
T ss_pred             HHHeEECCCCCEEEeccceeeeccCCC--ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCC
Confidence            999999999999999999997654332  2345679999999999874   45889999999999999999999998643


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-HHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-MVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-~~ell~  227 (239)
                      ...                  ...+...........  .+...+..+.++|.+||+.||.+||+ +++++.
T Consensus       221 ~~~------------------~~~~~~~~~~~~~~~--~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          221 SST------------------SSKEIVHTFETTVVT--YPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             TTS------------------CHHHHHHHHHHCCCC--CCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             CCc------------------cHHHHHHHHhhcccC--CCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence            211                  011111111111111  01234567899999999999999998 666654

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=4.3e-41  Score=266.94  Aligned_cols=201  Identities=21%  Similarity=0.349  Sum_probs=157.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +++++|+|||
T Consensus        68 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlk  140 (289)
T 4fvq_A           68 KLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNK----NCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVC  140 (289)
T ss_dssp             TSCCTTBCCEEEEECCTTCCEEEEECCTTCBHHHHHHHTG----GGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred             hCCCCCEeEEEEEEEeCCCCEEEEECCCCCCHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcC
Confidence            4789999999999999999999999999999999998752    34889999999999999999999   8999999999


Q ss_pred             CcceeecCCCc--------eeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCC
Q 044155           81 TSCILFNEENV--------AKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        81 ~~nil~~~~~~--------~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      |+||+++.++.        ++|+|||.+.....     .....+++.|+|||.+.+ ..++.++||||||+++|+|++|.
T Consensus       141 p~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~  215 (289)
T 4fvq_A          141 AKNILLIREEDRKTGNPPFIKLSDPGISITVLP-----KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGG  215 (289)
T ss_dssp             GGGEEEEECCBGGGTBCCEEEECCCCSCTTTSC-----HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTT
T ss_pred             cceEEEecCCcccccccceeeeccCcccccccC-----ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCC
Confidence            99999998886        99999999865422     224457889999999987 66899999999999999999965


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .|+....+...                 .......  .....    ...+..+.+++.+||+.||.+|||+.++++.|++
T Consensus       216 ~~~~~~~~~~~-----------------~~~~~~~--~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~  272 (289)
T 4fvq_A          216 DKPLSALDSQR-----------------KLQFYED--RHQLP----APKAAELANLINNCMDYEPDHRPSFRAIIRDLNS  272 (289)
T ss_dssp             CCTTTTSCHHH-----------------HHHHHHT--TCCCC----CCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHT
T ss_pred             CCCccccchHH-----------------HHHHhhc--cCCCC----CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence            54321110000                 0000000  00000    0123457899999999999999999999999998


Q ss_pred             HHHhh
Q 044155          232 IYRSL  236 (239)
Q Consensus       232 l~~~~  236 (239)
                      +...-
T Consensus       273 l~~p~  277 (289)
T 4fvq_A          273 LFTPD  277 (289)
T ss_dssp             CC---
T ss_pred             hcCCC
Confidence            87653

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=6.6e-40  Score=267.92  Aligned_cols=215  Identities=20%  Similarity=0.271  Sum_probs=158.4

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++......++||||+ +++|.+++.....   ..++...+..++.|++.||+|||   +.+|+||||||
T Consensus        93 ~~h~~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp  165 (360)
T 3llt_A           93 INNNNIVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNY---NGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKP  165 (360)
T ss_dssp             TTGGGBCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSG
T ss_pred             CCCCCeecccceeeECCeeEEEEcCC-CCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCc
Confidence            46999999999999999999999999 7999999987643   45889999999999999999999   89999999999


Q ss_pred             cceeecC-------------------------CCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccc
Q 044155           82 SCILFNE-------------------------ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSN  136 (239)
Q Consensus        82 ~nil~~~-------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  136 (239)
                      +|||++.                         ++.+||+|||++......    .....||+.|+|||++.+..++.++|
T Consensus       166 ~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~D  241 (360)
T 3llt_A          166 ENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY----HGSIINTRQYRAPEVILNLGWDVSSD  241 (360)
T ss_dssp             GGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC----CCSCCSCGGGCCHHHHTTCCCCTTHH
T ss_pred             ccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCC----CcCccCcccccCcHHHcCCCCCCccc
Confidence            9999975                         778999999998764332    23456899999999999999999999


Q ss_pred             hhhhhhHHHHHhcCCCCcccccccccc------cccchhhhhhhhhccchhhhhhh-----hhh------------cCCC
Q 044155          137 VFSFSVFLFELLTGWDVSDLVKDVHDL------VCPFSEYLKNCFEDNRFTEIVDH-----IVV------------EDVS  193 (239)
Q Consensus       137 i~slG~~l~~~~~g~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~~------------~~~~  193 (239)
                      |||||+++|+|++|..||.........      ..+....................     ...            ....
T Consensus       242 iwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  321 (360)
T 3llt_A          242 MWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCL  321 (360)
T ss_dssp             HHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCC
T ss_pred             hHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcc
Confidence            999999999999999999754322111      00000000000000000000000     000            0000


Q ss_pred             cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          194 SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       194 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      +......++.+.+++.+||+.||.+|||++|+++
T Consensus       322 ~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~  355 (360)
T 3llt_A          322 PLYKIIKHELFCDFLYSILQIDPTLRPSPAELLK  355 (360)
T ss_dssp             CHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             cccccchHHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence            1111122367889999999999999999999975

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.3e-40  Score=264.96  Aligned_cols=188  Identities=21%  Similarity=0.283  Sum_probs=156.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCC-ChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYG-TLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~-sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++||||+++++++.+.+..++|||++.+| +|.+++...     ..+++..+..++.|++.||.|||   ..+++|+||
T Consensus        85 ~l~h~~Iv~~~~~~~~~~~~~lv~e~~~~g~~l~~~~~~~-----~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dl  156 (335)
T 3dls_A           85 RVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRH-----PRLDEPLASYIFRQLVSAVGYLR---LKDIIHRDI  156 (335)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCTTSCBHHHHHHTC-----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCC
T ss_pred             hCCCCCEeeEEEEEeeCCEEEEEEEeCCCCccHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEEecc
Confidence            478999999999999999999999998766 999999875     56899999999999999999999   899999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      ||+||+++.++.+||+|||++........  .....||+.|+|||++.+..+ +.++||||||+++|+|++|..||....
T Consensus       157 kp~NIll~~~~~~kL~Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  234 (335)
T 3dls_A          157 KDENIVIAEDFTIKLIDFGSAAYLERGKL--FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELE  234 (335)
T ss_dssp             SGGGEEECTTSCEEECCCTTCEECCTTCC--BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGG
T ss_pred             CHHHEEEcCCCcEEEeecccceECCCCCc--eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHH
Confidence            99999999999999999999876543322  234568999999999988776 789999999999999999999986432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .....                       .....      ...++.+.+++.+||+.||.+|||++++++
T Consensus       235 ~~~~~-----------------------~~~~~------~~~~~~l~~li~~~L~~dP~~Rps~~ell~  274 (335)
T 3dls_A          235 ETVEA-----------------------AIHPP------YLVSKELMSLVSGLLQPVPERRTTLEKLVT  274 (335)
T ss_dssp             GGTTT-----------------------CCCCS------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHhh-----------------------ccCCC------cccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            11100                       00000      013456889999999999999999999987

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=9.4e-41  Score=269.56  Aligned_cols=221  Identities=24%  Similarity=0.367  Sum_probs=166.8

Q ss_pred             CCCCcccceeeEEEEeCC--CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLETP--IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~--~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++...+  ..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|
T Consensus        98 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~d  170 (326)
T 2w1i_A           98 SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK----ERIDHIKLLQYTSQICKGMEYLG---TKRYIHRD  170 (326)
T ss_dssp             TCCCTTBCCEEEEECC----CCEEEECCCTTCBHHHHHHHST----TSSCHHHHHHHHHHHHHHHHHHH---HTTEECSC
T ss_pred             hCCCCCeeeEEEEEEecCCCceEEEEECCCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHH---hCCEeccC
Confidence            478999999999987654  7899999999999999998753    45889999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||+||+++.++.++|+|||++.........  ......++..|+|||.+.+..++.++||||||+++|+|++|..|+..
T Consensus       171 ikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~  250 (326)
T 2w1i_A          171 LATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKS  250 (326)
T ss_dssp             CCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGS
T ss_pred             CCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCC
Confidence            9999999999999999999998766433221  12234467789999999988899999999999999999999888753


Q ss_pred             ccccccccccchhhhhhhhhccc---hhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNR---FTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      ...         .+.........   ........+........+...+..+.++|.+||+.||.+|||+.|+++.|+++.
T Consensus       251 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~  321 (326)
T 2w1i_A          251 PPA---------EFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR  321 (326)
T ss_dssp             HHH---------HHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CHH---------HHHHhhccccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            210         00000000000   000111111111111112245678999999999999999999999999999998


Q ss_pred             Hhhc
Q 044155          234 RSLS  237 (239)
Q Consensus       234 ~~~~  237 (239)
                      .++.
T Consensus       322 ~~l~  325 (326)
T 2w1i_A          322 DQMA  325 (326)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8764

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=4.4e-40  Score=267.92  Aligned_cols=192  Identities=18%  Similarity=0.261  Sum_probs=159.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..++...++.++.|++.||.|||   +++|+|||||
T Consensus        97 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlk  168 (350)
T 1rdq_E           97 AVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI-----GRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLK  168 (350)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCc
Confidence            478999999999999999999999999999999999875     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.+||+|||++......    .....||+.|+|||++.+..++.++|+||||+++|+|++|..||..... 
T Consensus       169 p~NIll~~~g~~kL~DFg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-  243 (350)
T 1rdq_E          169 PENLLIDQQGYIQVTDFGFAKRVKGR----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP-  243 (350)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECSSC----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-
T ss_pred             cceEEECCCCCEEEcccccceeccCC----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH-
Confidence            99999999999999999998765332    2345789999999999998999999999999999999999999853221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-----MVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~ell~  227 (239)
                                          .+....+.......  +...+..+.++|.+||+.||.+||+     ++|+++
T Consensus       244 --------------------~~~~~~i~~~~~~~--p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          244 --------------------IQIYEKIVSGKVRF--PSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             --------------------HHHHHHHHHCCCCC--CTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             --------------------HHHHHHHHcCCCCC--CCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence                                11111222221111  1234567899999999999999998     788765

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=271.46  Aligned_cols=193  Identities=21%  Similarity=0.312  Sum_probs=155.4

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+....++||||+++|+|.+++...     ..+++..++.++.|++.||.|||   +++|+||||||+
T Consensus        82 ~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~  153 (353)
T 3txo_A           82 NHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKS-----RRFDEARARFYAAEIISALMFLH---DKGIIYRDLKLD  153 (353)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGG
T ss_pred             CCCceeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHH
Confidence            7999999999999999999999999999999999875     56899999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      |||++.++.+||+|||+++..... ........||+.|+|||++.+..++.++|+||||+++|+|++|..||....    
T Consensus       154 NILl~~~g~ikL~DFG~a~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~----  228 (353)
T 3txo_A          154 NVLLDHEGHCKLADFGMCKEGICN-GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAEN----  228 (353)
T ss_dssp             GEEECTTSCEEECCCTTCBCSCC----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSS----
T ss_pred             HEEECCCCCEEEccccceeecccC-CccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCC----
Confidence            999999999999999998753222 123345679999999999998889999999999999999999999985322    


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH------HHHHH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM------VDVAK  227 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~------~ell~  227 (239)
                                       ..+....+.......  +...+..+.+++.+||+.||.+||++      +|+++
T Consensus       229 -----------------~~~~~~~i~~~~~~~--p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          229 -----------------EDDLFEAILNDEVVY--PTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             -----------------HHHHHHHHHHCCCCC--CTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             -----------------HHHHHHHHHcCCCCC--CCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence                             112222222222111  11345678899999999999999998      67664

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=3.4e-40  Score=268.70  Aligned_cols=197  Identities=25%  Similarity=0.349  Sum_probs=150.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus       104 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dik  175 (349)
T 2w4o_A          104 RLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEK-----GYYSERDAADAVKQILEAVAYLH---ENGIVHRDLK  175 (349)
T ss_dssp             HCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTC-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred             hCCCCCCcceeeeEecCCeEEEEEEeCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCC
Confidence            368999999999999999999999999999999999765     56889999999999999999999   8999999999


Q ss_pred             CcceeecC---CCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNE---ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~---~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.   ++.+||+|||++.......  ......|++.|+|||++.+..++.++||||||+++|+|++|..||...
T Consensus       176 p~NIll~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  253 (349)
T 2w4o_A          176 PENLLYATPAPDAPLKIADFGLSKIVEHQV--LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDE  253 (349)
T ss_dssp             GGGEEESSSSTTCCEEECCCC------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCT
T ss_pred             cccEEEecCCCCCCEEEccCccccccCccc--ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence            99999976   7889999999987653221  223456899999999999888999999999999999999999998533


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                    ...........  ........+..+.+++.+||+.||.+|||+.|+++
T Consensus       254 ~~~~--------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          254 RGDQ--------------------FMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             TCHH--------------------HHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             cccH--------------------HHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            2110                    00111111110  00111234567889999999999999999999986

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=9.5e-41  Score=269.59  Aligned_cols=222  Identities=22%  Similarity=0.290  Sum_probs=165.2

Q ss_pred             CCCCcccceeeEEEEe--CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLE--TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~--~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++..  ....++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|
T Consensus        80 ~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~D  152 (327)
T 3lxl_A           80 ALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHR----ARLDASRLLLYSSQICKGMEYLG---SRRCVHRD  152 (327)
T ss_dssp             TCCCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHHHHHHHG----GGCCHHHHHHHHHHHHHHHHHHH---HTTEECSC
T ss_pred             hcCCCceeEEEEEEecCCCceEEEEEeecCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHH---hCCccCCC
Confidence            4789999999999874  456789999999999999997642    45899999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||+||+++.++.++|+|||++.........  ......+++.|+|||++.+..++.++||||||+++|+|++|..||..
T Consensus       153 ikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~  232 (327)
T 3lxl_A          153 LAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCS  232 (327)
T ss_dssp             CSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGS
T ss_pred             CChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCcc
Confidence            9999999999999999999999766433221  22344578889999999988899999999999999999999998764


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      .........      .............. ..........+...++.+.+++.+||+.||.+|||+.|+++.|+.+..+.
T Consensus       233 ~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  305 (327)
T 3lxl_A          233 PSAEFLRMM------GCERDVPALSRLLE-LLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS  305 (327)
T ss_dssp             HHHHHHHHC------C----CCHHHHHHH-HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred             ccchhhhhc------ccccccccHHHHHH-HhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence            321100000      00000000111111 11111111112345677999999999999999999999999999877653

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=1.3e-39  Score=264.33  Aligned_cols=213  Identities=18%  Similarity=0.277  Sum_probs=162.2

Q ss_pred             CCCcccceeeEEEEeCC----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCC-----CC
Q 044155            2 MSHNHILKLIGCCLETP----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGF-----PR   72 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~-----~~   72 (239)
                      ++||||+++++++....    ..++||||+++++|.+++..      ..+++..+..++.|++.||.|||...     +.
T Consensus        93 l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~  166 (342)
T 1b6c_B           93 LRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP  166 (342)
T ss_dssp             CCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC
T ss_pred             cCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhc------cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            78999999999998775    78999999999999999976      35889999999999999999999211     36


Q ss_pred             CeeeccccCcceeecCCCceeEcccccccccCCCCcc---eeecccccccccCccccccC------CcccccchhhhhhH
Q 044155           73 PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH---ITDTVMGTLGYCAPEYMRTG------VFNEKSNVFSFSVF  143 (239)
Q Consensus        73 ~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~slG~~  143 (239)
                      +++|+||||+||+++.++.+||+|||++.........   ......|++.|+|||.+.+.      .++.++||||||++
T Consensus       167 ~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~i  246 (342)
T 1b6c_B          167 AIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLV  246 (342)
T ss_dssp             EEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CeeeCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHH
Confidence            8999999999999999999999999998765433221   12345689999999998765      23478999999999


Q ss_pred             HHHHhcCC----------CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcC----CCc-HHHHHHHHHHHHHH
Q 044155          144 LFELLTGW----------DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED----VSS-IEKEQQLHASAQVT  208 (239)
Q Consensus       144 l~~~~~g~----------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~li  208 (239)
                      +|+|++|.          .||.......                ..............    ... ......+..+.+++
T Consensus       247 l~el~tg~~~~~~~~~~~~p~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  310 (342)
T 1b6c_B          247 FWEIARRCSIGGIHEDYQLPYYDLVPSD----------------PSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIM  310 (342)
T ss_dssp             HHHHHTTBCBTTBCCCCCCTTTTTSCSS----------------CCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHH
T ss_pred             HHHHHhccCcCCcccccccCccccCcCc----------------ccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHH
Confidence            99999994          4443221100                01111111111111    110 11235677899999


Q ss_pred             hhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          209 FECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       209 ~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      .+||+.||.+|||+.++++.|+++.++.
T Consensus       311 ~~cl~~dp~~Rps~~~i~~~L~~i~~~~  338 (342)
T 1b6c_B          311 RECWYANGAARLTALRIKKTLSQLSQQE  338 (342)
T ss_dssp             HHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             HHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998764

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=8.7e-40  Score=262.00  Aligned_cols=212  Identities=20%  Similarity=0.262  Sum_probs=157.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..++||||+++++|.+++...... ...++...+..++.|++.||.|||   +.+++|+|||
T Consensus        88 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~  163 (310)
T 2wqm_A           88 QLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQ-KRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIK  163 (310)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEEECCCSCBHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred             hCCCCCEeeEEEEEEcCCcEEEEEecCCCCCHHHHHHHhccc-ccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCc
Confidence            478999999999999999999999999999999988742110 156889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++....... .......+++.|+|||.+.+..++.++||||||+++|+|++|..||......
T Consensus       164 p~NIl~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~  242 (310)
T 2wqm_A          164 PANVFITATGVVKLGDLGLGRFFSSKT-TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN  242 (310)
T ss_dssp             GGGEEECTTSCEEECCC-------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC
T ss_pred             HHHEEEcCCCCEEEEeccceeeecCCC-ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh
Confidence            999999999999999999986553221 1223456889999999999888999999999999999999999988532210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                                         .....................+..+.+++.+||+.||.+|||+.++++.|+++....
T Consensus       243 -------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~  299 (310)
T 2wqm_A          243 -------------------LYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACT  299 (310)
T ss_dssp             -------------------HHHHHHHHHTTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHhhcccCCCCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhh
Confidence                               001111111111111111234567899999999999999999999999999987654

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=3e-40  Score=270.83  Aligned_cols=191  Identities=22%  Similarity=0.293  Sum_probs=157.2

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+....++||||+++|+|.+++...     ..++...++.++.||+.||.|||   +++|+||||||
T Consensus        96 ~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp  167 (373)
T 2r5t_A           96 VKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE-----RCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKP  167 (373)
T ss_dssp             CCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCG
T ss_pred             CCCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCH
Confidence            68999999999999999999999999999999999875     56889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|+||||+++|||++|..||....   
T Consensus       168 ~NIll~~~g~ikL~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~---  243 (373)
T 2r5t_A          168 ENILLDSQGHIVLTDFGLCKENIEHN-STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN---  243 (373)
T ss_dssp             GGEEECTTSCEEECCCCBCGGGBCCC-CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSB---
T ss_pred             HHEEECCCCCEEEeeCccccccccCC-CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC---
Confidence            99999999999999999987542221 22345679999999999999899999999999999999999999985322   


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD  224 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~e  224 (239)
                                        ..+....+.......  +...+..+.++|.+||+.||.+||++.+
T Consensus       244 ------------------~~~~~~~i~~~~~~~--~~~~~~~~~~li~~lL~~dp~~R~~~~~  286 (373)
T 2r5t_A          244 ------------------TAEMYDNILNKPLQL--KPNITNSARHLLEGLLQKDRTKRLGAKD  286 (373)
T ss_dssp             ------------------HHHHHHHHHHSCCCC--CSSSCHHHHHHHHHHTCSSGGGSTTTTT
T ss_pred             ------------------HHHHHHHHHhcccCC--CCCCCHHHHHHHHHHcccCHHhCCCCCC
Confidence                              112222222222111  1134567899999999999999999853

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=7.4e-40  Score=260.38  Aligned_cols=217  Identities=16%  Similarity=0.166  Sum_probs=156.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++...++||||++ +++.+.+....    ..++...+..++.|++.||+|||   +.+++|+|||
T Consensus        57 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dik  128 (292)
T 3o0g_A           57 ELKHKNIVRLHDVLHSDKKLTLVFEFCD-QDLKKYFDSCN----GDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLK  128 (292)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             cCCCCCEeeEEeEEEeCCEEEEEEecCC-CCHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            4789999999999999999999999998 57777776543    56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||++...... ........+|+.|+|||++.+.. ++.++||||||+++|+|++|..|+....+
T Consensus       129 p~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~  207 (292)
T 3o0g_A          129 PQNLLINRNGELKLANFGLARAFGIP-VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND  207 (292)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECCSC-CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSS
T ss_pred             HHHEEEcCCCCEEEeecccceecCCc-cccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCC
Confidence            99999999999999999999765322 12234456899999999998765 79999999999999999999888643222


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhh--------cCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVV--------EDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .............. .....+.........        ...........+..+.+++.+||+.||++|||++|+++
T Consensus       208 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          208 VDDQLKRIFRLLGT-PTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             HHHHHHHHHHHHCC-CCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHHHHhCC-CChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence            11110000000000 000000000000000        00000001134567889999999999999999999986

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.3e-40  Score=264.53  Aligned_cols=205  Identities=18%  Similarity=0.202  Sum_probs=155.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        90 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlk  161 (309)
T 2h34_A           90 RLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQ-----GPLAPPRAVAIVRQIGSALDAAH---AAGATHRDVK  161 (309)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEEECCCCEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hcCCCCeeEEEEEEeeCCeEEEEEEecCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCC
Confidence            478999999999999999999999999999999999865     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++...............+++.|+|||.+.+..++.++||||||+++|+|++|..||......
T Consensus       162 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  241 (309)
T 2h34_A          162 PENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS  241 (309)
T ss_dssp             GGGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH
T ss_pred             hHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH
Confidence            99999999999999999998765433322334556899999999999888999999999999999999999998643210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCC-CHHHHHHHHHHHHHh
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRP-SMVDVAKKLRQIYRS  235 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rp-s~~ell~~L~~l~~~  235 (239)
                                            .....+.....  .......+..+.+++.+||+.||.+|| |++++++.|+++...
T Consensus       242 ----------------------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~  297 (309)
T 2h34_A          242 ----------------------VMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALAT  297 (309)
T ss_dssp             ----------------------HHHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC-
T ss_pred             ----------------------HHHHHhccCCCCccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHh
Confidence                                  00000000000  001123456788999999999999999 999999999987544

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=3.6e-40  Score=266.05  Aligned_cols=202  Identities=23%  Similarity=0.310  Sum_probs=142.9

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+....++||||+++++|.+++...     ..+++..+..++.|++.||.|||   +.+++|+||||+
T Consensus        64 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~  135 (325)
T 3kn6_A           64 GHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKK-----KHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPE  135 (325)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHC-----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGG
T ss_pred             CCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHH
Confidence            4999999999999999999999999999999999876     56899999999999999999999   899999999999


Q ss_pred             ceeecCCC---ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           83 CILFNEEN---VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        83 nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||+++.++   .+||+|||++....... .......+|+.|+|||++.+..++.++||||||+++|+|++|..||.....
T Consensus       136 NIll~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  214 (325)
T 3kn6_A          136 NLLFTDENDNLEIKIIDFGFARLKPPDN-QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDR  214 (325)
T ss_dssp             GEEEEC----CEEEECCCTTCEECCC-----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC----
T ss_pred             HEEEecCCCcccEEEeccccceecCCCC-CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCcc
Confidence            99998766   79999999987653322 223345679999999999988999999999999999999999999865432


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....              ....+....+.....  ........++.+.++|.+||+.||.+|||++|+++
T Consensus       215 ~~~~--------------~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          215 SLTC--------------TSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             ---C--------------CCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred             cccc--------------ccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence            1110              111122222222222  12222345678999999999999999999998873

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=4.4e-40  Score=267.48  Aligned_cols=197  Identities=23%  Similarity=0.326  Sum_probs=156.0

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+....++||||+++|+|.+++...     ..+++..++.++.|++.||.|||   +++|+||||||+
T Consensus        68 ~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~  139 (345)
T 3a8x_A           68 NHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ-----RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLD  139 (345)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGG
T ss_pred             CCCccCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHH
Confidence            8999999999999999999999999999999999865     56899999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      ||+++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|+||||+++|+|++|..||........
T Consensus       140 NIll~~~g~~kL~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~  218 (345)
T 3a8x_A          140 NVLLDSEGHIKLTDYGMCKEGLRPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDN  218 (345)
T ss_dssp             GEEECTTSCEEECCGGGCBCSCCTT-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC---
T ss_pred             HEEECCCCCEEEEeccccccccCCC-CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccc
Confidence            9999999999999999987532221 223456789999999999998999999999999999999999999964332111


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                      ...            .........+.......  +...+..+.++|.+||+.||.+||++
T Consensus       219 ~~~------------~~~~~~~~~i~~~~~~~--p~~~s~~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          219 PDQ------------NTEDYLFQVILEKQIRI--PRSLSVKAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             ----------------CHHHHHHHHHHCCCCC--CTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred             ccc------------ccHHHHHHHHHcCCCCC--CCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence            100            01111111112221111  12345678999999999999999996

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=5.9e-40  Score=263.59  Aligned_cols=212  Identities=21%  Similarity=0.237  Sum_probs=156.2

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+.+..++||||+++++|.+++...     ..++...+..++.|++.||+|||   +.+++|+||||
T Consensus        68 ~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp  139 (316)
T 2ac3_A           68 QGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKR-----RHFNELEASVVVQDVASALDFLH---NKGIAHRDLKP  139 (316)
T ss_dssp             CCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCG
T ss_pred             cCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCH
Confidence            47999999999999999999999999999999999875     56889999999999999999999   89999999999


Q ss_pred             cceeecCCCc---eeEcccccccccCCCCc------ceeecccccccccCcccccc-----CCcccccchhhhhhHHHHH
Q 044155           82 SCILFNEENV---AKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRT-----GVFNEKSNVFSFSVFLFEL  147 (239)
Q Consensus        82 ~nil~~~~~~---~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~-----~~~~~~~Di~slG~~l~~~  147 (239)
                      +||+++.++.   +||+|||++........      .......|++.|+|||++..     ..++.++||||||+++|+|
T Consensus       140 ~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l  219 (316)
T 2ac3_A          140 ENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYIL  219 (316)
T ss_dssp             GGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHH
Confidence            9999998776   89999999865432111      11223458999999999875     4578999999999999999


Q ss_pred             hcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHH--HHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 044155          148 LTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIE--KEQQLHASAQVTFECIKDSPADRPSMVDV  225 (239)
Q Consensus       148 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~cl~~dp~~Rps~~el  225 (239)
                      ++|..||...........      .......................+.  ....+..+.+++.+||+.||.+|||+.|+
T Consensus       220 ~~g~~pf~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~  293 (316)
T 2ac3_A          220 LSGYPPFVGRCGSDCGWD------RGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQV  293 (316)
T ss_dssp             HHSSCSCCCCCCSCSCC----------CCHHHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             HHCCCCCccccccccccc------ccccchhHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHH
Confidence            999999975443221100      0000000001112222222222111  12356778999999999999999999999


Q ss_pred             HH
Q 044155          226 AK  227 (239)
Q Consensus       226 l~  227 (239)
                      ++
T Consensus       294 l~  295 (316)
T 2ac3_A          294 LQ  295 (316)
T ss_dssp             HH
T ss_pred             hc
Confidence            87

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=2e-40  Score=269.31  Aligned_cols=193  Identities=22%  Similarity=0.329  Sum_probs=158.2

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+....++||||+++|+|.+++...     ..+++..+..++.|++.||.|||   +++++||||||
T Consensus        75 ~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp  146 (345)
T 1xjd_A           75 WEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC-----HKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKL  146 (345)
T ss_dssp             TTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCG
T ss_pred             CCCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCh
Confidence            38999999999999999999999999999999999875     56889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|+||||+++|+|++|..||.....  
T Consensus       147 ~NIll~~~g~vkL~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--  223 (345)
T 1xjd_A          147 DNILLDKDGHIKIADFGMCKENMLGD-AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE--  223 (345)
T ss_dssp             GGEEECTTSCEEECCCTTCBCCCCTT-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--
T ss_pred             hhEEECCCCCEEEeEChhhhhcccCC-CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH--
Confidence            99999999999999999987542221 223456789999999999998999999999999999999999999864221  


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH-HHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV-DVA  226 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~-ell  226 (239)
                                         .+....+.......  +...+..+.++|.+||..||.+||++. +++
T Consensus       224 -------------------~~~~~~i~~~~~~~--p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          224 -------------------EELFHSIRMDNPFY--PRWLEKEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             -------------------HHHHHHHHHCCCCC--CTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             -------------------HHHHHHHHhCCCCC--CcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence                               11111111111110  113456789999999999999999987 654

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=2.5e-39  Score=257.40  Aligned_cols=213  Identities=16%  Similarity=0.185  Sum_probs=163.8

Q ss_pred             CCCcccceeeEEE-EeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MSHNHILKLIGCC-LETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~H~niv~l~~~~-~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++|++++..++.+ ..+...++||||+ +++|.+++....    ..++...+..++.|++.||.|||   +++++|+|||
T Consensus        61 l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlk  132 (296)
T 4hgt_A           61 MQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCS----RKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVK  132 (296)
T ss_dssp             HTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hcCCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            4677777666655 5667789999999 799999998543    56899999999999999999999   8999999999


Q ss_pred             Ccceee---cCCCceeEcccccccccCCCCc------ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCC
Q 044155           81 TSCILF---NEENVAKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        81 ~~nil~---~~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      |+||++   +.++.+||+|||++........      .......|++.|+|||.+.+..++.++||||||+++|+|++|.
T Consensus       133 p~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  212 (296)
T 4hgt_A          133 PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS  212 (296)
T ss_dssp             GGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCC
Confidence            999999   7888999999999876543321      1223557899999999999989999999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||...........              ............ ........++.+.+++.+||+.||.+|||+.++++.|++
T Consensus       213 ~pf~~~~~~~~~~~--------------~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~  277 (296)
T 4hgt_A          213 LPWQGLKAATKRQK--------------YERISEKKMSTP-IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRN  277 (296)
T ss_dssp             CTTSSCCCSSSSSH--------------HHHHHHHHHHSC-HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHH
T ss_pred             CCCcccchhhhhhh--------------hhhhhcccccch-hhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence            99975432211110              000000000000 000011335678999999999999999999999999999


Q ss_pred             HHHhhc
Q 044155          232 IYRSLS  237 (239)
Q Consensus       232 l~~~~~  237 (239)
                      +..+..
T Consensus       278 ~~~~~~  283 (296)
T 4hgt_A          278 LFHRQG  283 (296)
T ss_dssp             HHHHHT
T ss_pred             HHHHhC
Confidence            988764

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-40  Score=269.22  Aligned_cols=193  Identities=21%  Similarity=0.314  Sum_probs=156.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+ +|+|.+++...     ..+++..+..++.|++.||.|||   +.+++|||||
T Consensus        65 ~l~hpnIv~l~~~~~~~~~~~lv~E~~-~g~l~~~l~~~-----~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlk  135 (336)
T 3h4j_B           65 LLRHPHIIKLYDVITTPTDIVMVIEYA-GGELFDYIVEK-----KRMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLK  135 (336)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEECCC-CEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCS
T ss_pred             hCCCCCCCeEEEEEEeCCEEEEEEECC-CCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCc
Confidence            478999999999999999999999999 58999988765     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||++.......  ......||+.|+|||++.+..+ +.++||||||+++|+|++|..||.....
T Consensus       136 p~NIll~~~~~~kl~DFG~s~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~  213 (336)
T 3h4j_B          136 PENLLLDDNLNVKIADFGLSNIMTDGN--FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFI  213 (336)
T ss_dssp             TTTEEECTTCCEEECCSSCTBTTTTSB--TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSS
T ss_pred             hhhEEEcCCCCEEEEEeccceeccCCc--ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccH
Confidence            999999999999999999987654332  2234568999999999988775 6899999999999999999999864221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                     .........  .+...++.+.+++.+||+.||.+|||++|+++
T Consensus       214 ~~~~---------------------~~i~~~~~~--~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~  258 (336)
T 3h4j_B          214 PNLF---------------------KKVNSCVYV--MPDFLSPGAQSLIRRMIVADPMQRITIQEIRR  258 (336)
T ss_dssp             TTCB---------------------CCCCSSCCC--CCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred             HHHH---------------------HHHHcCCCC--CcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence            1100                     000000000  01124566889999999999999999999976

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=5.1e-40  Score=275.84  Aligned_cols=195  Identities=18%  Similarity=0.266  Sum_probs=159.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~i~H~dl   79 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   + .+|+||||
T Consensus       204 ~l~h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDl  275 (446)
T 4ejn_A          204 NSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE-----RVFSEDRARFYGAEIVSALDYLH---SEKNVVYRDL  275 (446)
T ss_dssp             CCSCTTSCCEEEEEEETTEEEEEECCCSSCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCC
T ss_pred             hCCCCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCC
Confidence            478999999999999999999999999999999999765     56899999999999999999999   7 89999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||+|||++.++.+||+|||++....... .......||+.|+|||++.+..++.++||||||+++|+|++|..||.....
T Consensus       276 kp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~  354 (446)
T 4ejn_A          276 KLENLMLDKDGHIKITDFGLCKEGIKDG-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  354 (446)
T ss_dssp             CGGGEEECSSSCEEECCCCCCCTTCC------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             CHHHEEECCCCCEEEccCCCceeccCCC-cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH
Confidence            9999999999999999999987542221 223456789999999999999999999999999999999999999853221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                           ......+.......  +...++.+.++|.+||+.||.+||     |++|+++
T Consensus       355 ---------------------~~~~~~i~~~~~~~--p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          355 ---------------------EKLFELILMEEIRF--PRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             ---------------------HHHHHHHHHCCCCC--CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             ---------------------HHHHHHHHhCCCCC--CccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence                                 11111111111111  113456789999999999999999     9999986

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=1e-39  Score=274.98  Aligned_cols=194  Identities=24%  Similarity=0.325  Sum_probs=159.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|||||
T Consensus        72 ~l~HpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-----~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLk  143 (476)
T 2y94_A           72 LFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKN-----GRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLK  143 (476)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCSSEEHHHHTTSS-----SSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCS
T ss_pred             hCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCCccccc
Confidence            478999999999999999999999999999999999764     56899999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||++.......  ......|++.|+|||++.+..+ +.++||||||+++|+|++|..||.....
T Consensus       144 p~NIll~~~~~vkL~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~  221 (476)
T 2y94_A          144 PENVLLDAHMNAKIADFGLSNMMSDGE--FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV  221 (476)
T ss_dssp             GGGEEECTTCCEEECCCSSCEECCTTC--CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS
T ss_pred             HHHEEEecCCCeEEEeccchhhccccc--cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH
Confidence            999999999999999999987654332  2335568999999999988765 6899999999999999999999853221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           ......+.......  +...++.+.++|.+||+.||.+|||++|+++
T Consensus       222 ---------------------~~~~~~i~~~~~~~--p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          222 ---------------------PTLFKKICDGIFYT--PQYLNPSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             ---------------------HHHHHHHHTTCCCC--CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ---------------------HHHHHHHhcCCcCC--CccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence                                 11111111111111  1123467889999999999999999999987

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=2.7e-41  Score=289.20  Aligned_cols=206  Identities=24%  Similarity=0.346  Sum_probs=163.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+||||+++++++.+ ...++||||+++|+|.+++.....   ..++...+..++.||+.||.|||   +++++|||||
T Consensus       318 ~l~hpniv~~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~---~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlk  390 (535)
T 2h8h_A          318 KLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETG---KYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLR  390 (535)
T ss_dssp             HCCCTTBCCEEEEECS-SSCEEEECCCTTEEHHHHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             hCCCCCEeeEEEEEee-ccceEeeehhcCCcHHHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCC
Confidence            3789999999999866 678999999999999999975322   45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+|||++.++.+||+|||++...............++..|+|||++....++.++||||||+++|||++ |..||.....
T Consensus       391 p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~  470 (535)
T 2h8h_A          391 AANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN  470 (535)
T ss_dssp             GGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH
T ss_pred             HhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            999999999999999999987654322112223446788999999998899999999999999999999 8888754321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                                           .+....+... .....+...+..+.++|.+||+.||.+|||+++|++.|+++..+
T Consensus       471 ---------------------~~~~~~i~~~-~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~  524 (535)
T 2h8h_A          471 ---------------------REVLDQVERG-YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  524 (535)
T ss_dssp             ---------------------HHHHHHHHTT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred             ---------------------HHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence                                 1111111111 11111124456789999999999999999999999999987654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=6.9e-40  Score=269.92  Aligned_cols=197  Identities=18%  Similarity=0.268  Sum_probs=159.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++....    ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus       104 ~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlk  176 (387)
T 1kob_A          104 QLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAED----YKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIK  176 (387)
T ss_dssp             TCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTT----CCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred             hCCCcCCCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccc
Confidence            4789999999999999999999999999999999997643    46899999999999999999999   8999999999


Q ss_pred             CcceeecC--CCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNE--ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+||+++.  ++.+||+|||++.......  ......||+.|+|||++.+..++.++||||||+++|+|++|..||....
T Consensus       177 p~NIll~~~~~~~vkL~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~  254 (387)
T 1kob_A          177 PENIMCETKKASSVKIIDFGLATKLNPDE--IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED  254 (387)
T ss_dssp             GGGEEESSTTCCCEEECCCTTCEECCTTS--CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS
T ss_pred             hHHeEEecCCCCceEEEecccceecCCCc--ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCC
Confidence            99999974  4679999999997664332  2334568999999999998889999999999999999999999986432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcC--CCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED--VSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                     +.........  .........++.+.++|.+||..||.+|||+.|+++
T Consensus       255 ~~---------------------~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          255 DL---------------------ETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE  304 (387)
T ss_dssp             HH---------------------HHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             HH---------------------HHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence            11                     0011111100  001111234567899999999999999999999986

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=3e-40  Score=268.13  Aligned_cols=198  Identities=21%  Similarity=0.304  Sum_probs=157.4

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.++...++||||+++|+|.+++...     ..+++..+..++.|++.||.|||   +.+++||||||+
T Consensus        74 ~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~~~-----~~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~  145 (342)
T 2qr7_A           74 QHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQ-----KFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPS  145 (342)
T ss_dssp             TSTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC-----TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGG
T ss_pred             CCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHH
Confidence            7999999999999999999999999999999999865     56899999999999999999999   899999999999


Q ss_pred             ceeecCC----CceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           83 CILFNEE----NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        83 nil~~~~----~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      ||++..+    +.+||+|||++....... .......||+.|+|||++.+..++.++||||||+++|+|++|..||....
T Consensus       146 NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~  224 (342)
T 2qr7_A          146 NILYVDESGNPESIRICDFGFAKQLRAEN-GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGP  224 (342)
T ss_dssp             GEEESSSSCSGGGEEECCCTTCEECBCTT-CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSST
T ss_pred             HEEEecCCCCcCeEEEEECCCcccCcCCC-CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCC
Confidence            9998543    259999999987653322 12335568999999999988889999999999999999999999986422


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                  ...+....+......  .......+..+.++|.+||..||.+|||+.++++
T Consensus       225 ~~------------------~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~  277 (342)
T 2qr7_A          225 DD------------------TPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR  277 (342)
T ss_dssp             TS------------------CHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             cC------------------CHHHHHHHHccCCcccCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            10                  111111111111111  0011245567899999999999999999999886

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=5.4e-40  Score=269.62  Aligned_cols=197  Identities=21%  Similarity=0.266  Sum_probs=159.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++....    ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus       142 ~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlk  214 (373)
T 2x4f_A          142 QLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDES----YNLTELDTILFMKQICEGIRHMH---QMYILHLDLK  214 (373)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHHTG----GGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred             hCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCC
Confidence            4799999999999999999999999999999999887642    46889999999999999999999   8999999999


Q ss_pred             Ccceee--cCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILF--NEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~--~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+||++  +.++.+||+|||++........  .....||+.|+|||++.+..++.++||||||+++|+|++|..||....
T Consensus       215 p~NIll~~~~~~~~kl~DFG~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~  292 (373)
T 2x4f_A          215 PENILCVNRDAKQIKIIDFGLARRYKPREK--LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN  292 (373)
T ss_dssp             GGGEEEEETTTTEEEECCCSSCEECCTTCB--CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             HHHEEEecCCCCcEEEEeCCCceecCCccc--cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999  5667899999999876543321  234468999999999998889999999999999999999999986432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcC--CCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED--VSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                     +....+....  .........++.+.++|.+||+.||.+|||+.|+++
T Consensus       293 ~~---------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          293 DA---------------------ETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALK  342 (373)
T ss_dssp             HH---------------------HHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             HH---------------------HHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            11                     1111111111  011111234567899999999999999999999997

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=2.2e-40  Score=274.45  Aligned_cols=196  Identities=17%  Similarity=0.252  Sum_probs=158.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+....++||||+++|+|.+++..      ..+++..++.++.|++.||.|||   +++|+||||||
T Consensus       126 l~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~------~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp  196 (410)
T 3v8s_A          126 ANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSN------YDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKP  196 (410)
T ss_dssp             CCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred             CCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCH
Confidence            6899999999999999999999999999999999975      35889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC----cccccchhhhhhHHHHHhcCCCCcccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV----FNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      +|||++.++.+||+|||++...............||+.|+|||++.+..    ++.++|+||||+++|+|++|..||...
T Consensus       197 ~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  276 (410)
T 3v8s_A          197 DNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  276 (410)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             HHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC
Confidence            9999999999999999999776544333344667999999999998655    789999999999999999999998532


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhc--CCCcHHHHHHHHHHHHHHhhhcCCCCCC--CCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVE--DVSSIEKEQQLHASAQVTFECIKDSPAD--RPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~ell~  227 (239)
                      ..                     .+....+...  ....+.....+..++++|.+||..+|.+  ||+++|+++
T Consensus       277 ~~---------------------~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~  329 (410)
T 3v8s_A          277 SL---------------------VGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKR  329 (410)
T ss_dssp             SH---------------------HHHHHHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred             Ch---------------------hhHHHHHHhccccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence            21                     1111111110  0000001134567899999999999988  999999875

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=1.8e-39  Score=256.16  Aligned_cols=200  Identities=21%  Similarity=0.328  Sum_probs=161.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus        62 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlk  133 (277)
T 3f3z_A           62 SLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHK-----RVFRESDAARIMKDVLSAVAYCH---KLNVAHRDLK  133 (277)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCEeeEEEEEecCCeEEEEEeccCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCC
Confidence            478999999999999999999999999999999988765     56889999999999999999999   8999999999


Q ss_pred             Ccceee---cCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILF---NEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~---~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||++   +.++.++|+|||++.......  ......+++.|+|||.+.+. ++.++||||||+++|+|++|..||...
T Consensus       134 p~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~  210 (277)
T 3f3z_A          134 PENFLFLTDSPDSPLKLIDFGLAARFKPGK--MMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAP  210 (277)
T ss_dssp             GGGEEESSSSTTCCEEECCCTTCEECCTTS--CBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHHEEEecCCCCCcEEEEecccceeccCcc--chhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCC
Confidence            999999   778899999999987654332  23345689999999988754 899999999999999999999998543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHH--HHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH--HHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIE--KEQQLHASAQVTFECIKDSPADRPSMVDVAK--KLRQI  232 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~cl~~dp~~Rps~~ell~--~L~~l  232 (239)
                      ..                     .+..............  ....++.+.+++.+||+.||.+|||+.++++  ++++.
T Consensus       211 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~~  268 (277)
T 3f3z_A          211 TD---------------------SEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQ  268 (277)
T ss_dssp             SH---------------------HHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHHH
T ss_pred             CH---------------------HHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcc
Confidence            21                     1111122222211111  1144678899999999999999999999986  45443

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1.9e-40  Score=261.98  Aligned_cols=203  Identities=26%  Similarity=0.368  Sum_probs=155.9

Q ss_pred             CCCCcccceeeEEEEeC-CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~-~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++||||+++++++.+. +..++||||+++++|.+++.....   ..++...+..++.|++.||.|||   +.+++|+||
T Consensus        70 ~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl  143 (278)
T 1byg_A           70 QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDL  143 (278)
T ss_dssp             TCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred             hCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhccc---ccCCHHHHHHHHHHHHHHHHHHH---hCCccccCC
Confidence            47899999999997654 478999999998999999976421   23788999999999999999999   899999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      ||+||+++.++.++|+|||++......    .....+++.|+|||.+.+..++.++||||||+++|+|++ |..||....
T Consensus       144 kp~Nil~~~~~~~~l~Dfg~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~  219 (278)
T 1byg_A          144 AARNVLVSEDNVAKVSDFGLTKEASST----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP  219 (278)
T ss_dssp             SGGGEEECTTSCEEECCCCC----------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC
T ss_pred             CcceEEEeCCCcEEEeecccccccccc----ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCC
Confidence            999999999999999999998654322    123356888999999988889999999999999999998 988875322


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      .                     .+........ .....+...++.+.+++.+||+.||.+|||+.++++.|+++...
T Consensus       220 ~---------------------~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~  274 (278)
T 1byg_A          220 L---------------------KDVVPRVEKG-YKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH  274 (278)
T ss_dssp             G---------------------GGHHHHHTTT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             H---------------------HHHHHHHhcC-CCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence            1                     0111111010 00011123456789999999999999999999999999998754

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=3.2e-40  Score=269.83  Aligned_cols=216  Identities=19%  Similarity=0.282  Sum_probs=160.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC-Ceeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR-PIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~-~i~H~dl   79 (239)
                      +++||||+++++++.+++..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +. +++|+||
T Consensus        87 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dl  158 (360)
T 3eqc_A           87 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-----GRIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDV  158 (360)
T ss_dssp             GCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCC
T ss_pred             HCCCCCEEEEeEEEEECCEEEEEEECCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCc
Confidence            478999999999999999999999999999999999875     56889999999999999999999   65 8999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||+||+++.++.++|+|||++......   ......|++.|+|||++.+..++.++||||||+++|+|++|..||.....
T Consensus       159 kp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  235 (360)
T 3eqc_A          159 KPSNILVNSRGEIKLCDFGVSGQLIDS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDA  235 (360)
T ss_dssp             SGGGEEECTTCCEEECCCCCCHHHHHH---C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCH
T ss_pred             cHHHEEECCCCCEEEEECCCCcccccc---cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999999999999999998654211   12345689999999999998999999999999999999999999865332


Q ss_pred             ccccc---------------------ccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCC
Q 044155          160 VHDLV---------------------CPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPAD  218 (239)
Q Consensus       160 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~  218 (239)
                      .....                     ..+..+...........+..+...............+..+.++|.+||+.||.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  315 (360)
T 3eqc_A          236 KELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAE  315 (360)
T ss_dssp             HHHHHHHC------------------------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTT
T ss_pred             HHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhh
Confidence            11000                     000000000001111122222222222221112234667899999999999999


Q ss_pred             CCCHHHHHH
Q 044155          219 RPSMVDVAK  227 (239)
Q Consensus       219 Rps~~ell~  227 (239)
                      |||++|+++
T Consensus       316 Rpt~~ell~  324 (360)
T 3eqc_A          316 RADLKQLMV  324 (360)
T ss_dssp             SCCHHHHHT
T ss_pred             CCCHHHHhh
Confidence            999999987

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=3.8e-40  Score=264.59  Aligned_cols=210  Identities=21%  Similarity=0.370  Sum_probs=164.2

Q ss_pred             CCcccceeeEEEEeCC-CceEEEEEccCCChhhhhhcCCCCC-----------CCcCCHHHHHHHHHHHHHHHhHHhhCC
Q 044155            3 SHNHILKLIGCCLETP-IPILVFESVQYGTLWDRILGAPQPH-----------FEPLLLKHRLKIAMDIVHALAYLHFGF   70 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~-~~~iv~e~~~~~sL~~~l~~~~~~~-----------~~~~~~~~~~~~~~~i~~~l~~LH~~~   70 (239)
                      +||||+++++++...+ ..++||||+++++|.+++.......           ...++...+..++.|++.||.|||   
T Consensus        89 ~hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---  165 (316)
T 2xir_A           89 HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---  165 (316)
T ss_dssp             CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---
T ss_pred             cCCCeeeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---
Confidence            6999999999988755 5899999999999999998753210           022789999999999999999999   


Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~  149 (239)
                      +.+++|+||||+||+++.++.++|+|||++........ .......+++.|+|||++.+..++.++||||||+++|+|++
T Consensus       166 ~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t  245 (316)
T 2xir_A          166 SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS  245 (316)
T ss_dssp             HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             hCCcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999876543322 22344567889999999998889999999999999999998


Q ss_pred             -CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          150 -GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       150 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                       |..||.........                 .....   .. .....+...++.+.+++.+||+.||.+|||+.++++.
T Consensus       246 ~g~~p~~~~~~~~~~-----------------~~~~~---~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  304 (316)
T 2xir_A          246 LGASPYPGVKIDEEF-----------------CRRLK---EG-TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  304 (316)
T ss_dssp             TSCCSSTTCCCSHHH-----------------HHHHH---HT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCcccchhHHH-----------------HHHhc---cC-ccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence             88888543211000                 00000   00 0000011345678899999999999999999999999


Q ss_pred             HHHHHHhh
Q 044155          229 LRQIYRSL  236 (239)
Q Consensus       229 L~~l~~~~  236 (239)
                      |+++...-
T Consensus       305 L~~~~~~~  312 (316)
T 2xir_A          305 LGNLLQAN  312 (316)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhh
Confidence            99988754

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=8.6e-40  Score=258.64  Aligned_cols=203  Identities=21%  Similarity=0.307  Sum_probs=161.0

Q ss_pred             CCCCcccceeeEEEEe----------------CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHh
Q 044155            1 QMSHNHILKLIGCCLE----------------TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALA   64 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~----------------~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~   64 (239)
                      +++||||+++++++..                ....++||||+++++|.+++.....   ..+++..+..++.|++.||.
T Consensus        60 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~  136 (284)
T 2a19_B           60 KLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG---EKLDKVLALELFEQITKGVD  136 (284)
T ss_dssp             HCCCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGG---SCCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccC---CCCCHHHHHHHHHHHHHHHH
Confidence            3689999999998864                3457899999999999999976432   56889999999999999999


Q ss_pred             HHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHH
Q 044155           65 YLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFL  144 (239)
Q Consensus        65 ~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l  144 (239)
                      |||   +.+++|+||||+||+++.++.++|+|||++........  .....+++.|+|||.+.+..++.++||||||+++
T Consensus       137 ~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il  211 (284)
T 2a19_B          137 YIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGK--RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLIL  211 (284)
T ss_dssp             HHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEESSCCSC--CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHH
T ss_pred             HHH---hCCeeeccCCHHHEEEcCCCCEEECcchhheecccccc--ccccCCcccccChhhhccCCCcchhhhHHHHHHH
Confidence            999   89999999999999999999999999999876543321  2344689999999999988899999999999999


Q ss_pred             HHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 044155          145 FELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVD  224 (239)
Q Consensus       145 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~e  224 (239)
                      |+|++|..|+....                       ............    ...+..+.+++.+||+.||.+|||+.|
T Consensus       212 ~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~----~~~~~~~~~li~~~l~~dp~~Rps~~e  264 (284)
T 2a19_B          212 AELLHVCDTAFETS-----------------------KFFTDLRDGIIS----DIFDKKEKTLLQKLLSKKPEDRPNTSE  264 (284)
T ss_dssp             HHHHSCCSSHHHHH-----------------------HHHHHHHTTCCC----TTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHhcCCcchhHH-----------------------HHHHHhhccccc----ccCCHHHHHHHHHHccCChhhCcCHHH
Confidence            99999987753211                       000001111111    123456789999999999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 044155          225 VAKKLRQIYRSLSC  238 (239)
Q Consensus       225 ll~~L~~l~~~~~~  238 (239)
                      +++.|..+.++...
T Consensus       265 ~l~~l~~~~~~~~~  278 (284)
T 2a19_B          265 ILRTLTVWKKSPEK  278 (284)
T ss_dssp             HHHHHHHHTC----
T ss_pred             HHHHHHHHhhCCCc
Confidence            99999988766543

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.6e-40  Score=272.22  Aligned_cols=197  Identities=20%  Similarity=0.206  Sum_probs=157.4

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+.+..++||||+++|+|.+++.+..    ..+++..++.++.|++.||.|||   +.+|+||||||
T Consensus       118 ~~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~----~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp  190 (412)
T 2vd5_A          118 GDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFG----ERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKP  190 (412)
T ss_dssp             SCTTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHS----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred             cCCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCH
Confidence            689999999999999999999999999999999997642    46889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc-------cCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-------TGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-------~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      +|||++.++.+||+|||++...............||+.|+|||++.       ...++.++|+||||+++|||++|..||
T Consensus       191 ~NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf  270 (412)
T 2vd5_A          191 DNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPF  270 (412)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HHeeecCCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCC
Confidence            9999999999999999999776443332334567999999999987       356899999999999999999999998


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhh---cCCCcHHHHHHHHHHHHHHhhhcCCCCCCC---CCHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVV---EDVSSIEKEQQLHASAQVTFECIKDSPADR---PSMVDVAK  227 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~li~~cl~~dp~~R---ps~~ell~  227 (239)
                      .....                     .+....+..   ....+......+..+.++|.+||. +|.+|   |+++|+++
T Consensus       271 ~~~~~---------------------~~~~~~i~~~~~~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          271 YADST---------------------AETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             CCSSH---------------------HHHHHHHHTHHHHCCCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             CCCCH---------------------HHHHHHHHhcccCcCCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence            54221                     111111110   000111123456788999999999 99998   58888864

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-40  Score=269.17  Aligned_cols=214  Identities=13%  Similarity=0.149  Sum_probs=163.9

Q ss_pred             CCCcccce---------------eeEEEEe-CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhH
Q 044155            2 MSHNHILK---------------LIGCCLE-TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAY   65 (239)
Q Consensus         2 l~H~niv~---------------l~~~~~~-~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~   65 (239)
                      ++||||++               +++++.. +...++||||+ +++|.+++.....   ..+++..+..++.|++.||.|
T Consensus        99 l~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~---~~l~~~~~~~i~~qi~~~L~~  174 (352)
T 2jii_A           99 AAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPK---HVLSERSVLQVACRLLDALEF  174 (352)
T ss_dssp             HCCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGG---GCCCHHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCc---CCCCHHHHHHHHHHHHHHHHH
Confidence            46777776               7788876 66789999999 8999999987532   568999999999999999999


Q ss_pred             HhhCCCCCeeeccccCcceeecCCC--ceeEcccccccccCCCCc------ceeecccccccccCccccccCCcccccch
Q 044155           66 LHFGFPRPIVFRNFKTSCILFNEEN--VAKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRTGVFNEKSNV  137 (239)
Q Consensus        66 LH~~~~~~i~H~dlk~~nil~~~~~--~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  137 (239)
                      ||   +++++|+||||+||+++.++  .++|+|||++........      .......|++.|+|||++.+..++.++||
T Consensus       175 LH---~~~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  251 (352)
T 2jii_A          175 LH---ENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDL  251 (352)
T ss_dssp             HH---HTTCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHH
T ss_pred             HH---hCCccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhH
Confidence            99   89999999999999999998  899999999876532211      11234478999999999998899999999


Q ss_pred             hhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcH----HHHHHHHHHHHHHhhhcC
Q 044155          138 FSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSI----EKEQQLHASAQVTFECIK  213 (239)
Q Consensus       138 ~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~li~~cl~  213 (239)
                      ||||+++|+|++|..||.........                ................    .....+..+.+++.+||+
T Consensus       252 ~slG~il~el~~g~~pf~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  315 (352)
T 2jii_A          252 QSLGYCMLKWLYGFLPWTNCLPNTED----------------IMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMA  315 (352)
T ss_dssp             HHHHHHHHHHHHSCCTTGGGTTCHHH----------------HHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCcccCCcCHHH----------------HHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHh
Confidence            99999999999999998654311100                0000000000000000    000234678999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhhcC
Q 044155          214 DSPADRPSMVDVAKKLRQIYRSLSC  238 (239)
Q Consensus       214 ~dp~~Rps~~ell~~L~~l~~~~~~  238 (239)
                      .||.+|||++++++.|+++......
T Consensus       316 ~dp~~Rps~~~l~~~L~~~~~~~~~  340 (352)
T 2jii_A          316 LTYEEKPPYAMLRNNLEALLQDLRV  340 (352)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred             CChhhCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999887653

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=3.3e-40  Score=261.98  Aligned_cols=216  Identities=17%  Similarity=0.224  Sum_probs=154.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||++ ++|.+++....    ..++...+..++.|++.||.|||   +++++|+|||
T Consensus        56 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlk  127 (288)
T 1ob3_A           56 ELKHSNIVKLYDVIHTKKRLVLVFEHLD-QDLKKLLDVCE----GGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLK  127 (288)
T ss_dssp             GCCCTTBCCEEEEEECSSCEEEEEECCS-EEHHHHHHTST----TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hcCCCCEeeeeeEEccCCeEEEEEEecC-CCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            4789999999999999999999999998 69999887643    45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||++....... .......+|+.|+|||++.+. .++.++||||||+++|+|++|..||.....
T Consensus       128 p~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~  206 (288)
T 1ob3_A          128 PQNLLINREGELKIADFGLARAFGIPV-RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSE  206 (288)
T ss_dssp             GGGEEECTTSCEEECCTTHHHHHCC----------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             HHHEEEcCCCCEEEeECccccccCccc-cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999999999999999987653221 122344679999999998764 589999999999999999999999975432


Q ss_pred             cccccccchhhhhhhhhccchhhhhh-----hhhhc--CC-CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVD-----HIVVE--DV-SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~-~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ........... .. .....++....     .....  .. ........++.+.+++.+||+.||++|||++|+++
T Consensus       207 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          207 ADQLMRIFRIL-GT-PNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             HHHHHHHHHHH-CC-CCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHHH-CC-CChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            21111000000 00 00000000000     00000  00 00001134567889999999999999999999986

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=5.4e-40  Score=263.47  Aligned_cols=204  Identities=23%  Similarity=0.333  Sum_probs=153.2

Q ss_pred             CCCCcccceeeEEEEeCCCc----eEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            1 QMSHNHILKLIGCCLETPIP----ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~----~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +++||||+++++++......    ++||||+++++|.+++...     ..++...+..++.|++.||.|||   +++++|
T Consensus        68 ~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH  139 (311)
T 3ork_A           68 ALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-----GPMTPKRAIEVIADACQALNFSH---QNGIIH  139 (311)
T ss_dssp             CCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTCCC
T ss_pred             cCCCCCcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCCc
Confidence            47899999999999876554    8999999999999999865     56889999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      +||||+||+++.++.+||+|||++........  .......|++.|+|||++.+..++.++||||||+++|+|++|..||
T Consensus       140 ~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf  219 (311)
T 3ork_A          140 RDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPF  219 (311)
T ss_dssp             CCCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSC
T ss_pred             CCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999876543221  1233456899999999999889999999999999999999999998


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHH--HHHHHHHHHHHHhhhcCCCCCCCCCHHH-HHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIE--KEQQLHASAQVTFECIKDSPADRPSMVD-VAKKLRQ  231 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~cl~~dp~~Rps~~e-ll~~L~~  231 (239)
                      .....                     ................  ....+..+.++|.+||+.||.+||++.+ +...|.+
T Consensus       220 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~  278 (311)
T 3ork_A          220 TGDSP---------------------VSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVR  278 (311)
T ss_dssp             CCSSH---------------------HHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             CCCCh---------------------HHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHH
Confidence            54321                     1111111111111111  1235677899999999999999996554 5556655


Q ss_pred             HH
Q 044155          232 IY  233 (239)
Q Consensus       232 l~  233 (239)
                      +.
T Consensus       279 ~~  280 (311)
T 3ork_A          279 VH  280 (311)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=2.6e-39  Score=256.91  Aligned_cols=195  Identities=19%  Similarity=0.295  Sum_probs=153.7

Q ss_pred             CCCCcccceeeEEEEe----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC--e
Q 044155            1 QMSHNHILKLIGCCLE----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP--I   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~--i   74 (239)
                      +++||||+++++++..    ....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+  +
T Consensus        81 ~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~~~i  152 (290)
T 1t4h_A           81 GLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-----KVMKIKVLRSWCRQILKGLQFLH---TRTPPI  152 (290)
T ss_dssp             TCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---TSSSCC
T ss_pred             hCCCCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHH---cCCCCE
Confidence            4789999999999875    34578999999999999999875     56889999999999999999999   888  9


Q ss_pred             eeccccCcceeec-CCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCC
Q 044155           75 VFRNFKTSCILFN-EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        75 ~H~dlk~~nil~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      +|+||||+||+++ .++.++|+|||++.......   .....|++.|+|||.+. ..++.++||||||+++|+|++|..|
T Consensus       153 ~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~p  228 (290)
T 1t4h_A          153 IHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF---AKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYP  228 (290)
T ss_dssp             CCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTS---BEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             EECCCCHHHEEEECCCCCEEEeeCCCcccccccc---cccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCC
Confidence            9999999999997 78899999999986543322   23456899999999886 4589999999999999999999999


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      |........                    ..................++.+.+++.+||+.||.+|||+.|+++
T Consensus       229 f~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          229 YSECQNAAQ--------------------IYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             TTTCSSHHH--------------------HHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCcCcHHH--------------------HHHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence            854321111                    111111111111111223456899999999999999999999986

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=7.6e-40  Score=264.41  Aligned_cols=194  Identities=22%  Similarity=0.292  Sum_probs=154.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+.+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +++++||||||
T Consensus        78 l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp  149 (327)
T 3a62_A           78 VKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLERE-----GIFMEDTACFYLAEISMALGHLH---QKGIIYRDLKP  149 (327)
T ss_dssp             CCCTTBCCEEEEEECSSCEEEEEECCTTEEHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCT
T ss_pred             CCCCCccceeEEEEcCCEEEEEEeCCCCCcHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCH
Confidence            68999999999999999999999999999999999865     56889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.+||+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||.....  
T Consensus       150 ~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--  226 (327)
T 3a62_A          150 ENIMLNHQGHVKLTDFGLCKESIHDG-TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR--  226 (327)
T ss_dssp             TTEEECTTSCEEECCCSCC-----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--
T ss_pred             HHeEECCCCcEEEEeCCcccccccCC-ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH--
Confidence            99999999999999999986542221 123355689999999999988899999999999999999999999864221  


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                         .+....+.......  +...+..+.+++.+||+.||.+||     ++.|+++
T Consensus       227 -------------------~~~~~~i~~~~~~~--p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          227 -------------------KKTIDKILKCKLNL--PPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             -------------------HHHHHHHHHTCCCC--CTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             -------------------HHHHHHHHhCCCCC--CCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence                               11111111111111  113456789999999999999999     7778765

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.2e-40  Score=265.59  Aligned_cols=216  Identities=18%  Similarity=0.223  Sum_probs=154.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||++ ++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        56 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dik  127 (324)
T 3mtl_A           56 DLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCG----NIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLK  127 (324)
T ss_dssp             CCCCTTBCCEEEEEECSSCEEEEEECCS-EEHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCC
T ss_pred             hcCCCCCCeeeeEEeeCCEEEEEecccc-cCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcC
Confidence            4789999999999999999999999997 79999988753    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||++....... .......+++.|+|||++.+ ..++.++||||||+++|+|++|..||.....
T Consensus       128 p~NIl~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~  206 (324)
T 3mtl_A          128 PQNLLINERGELKLADFGLARAKSIPT-KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTV  206 (324)
T ss_dssp             GGGEEECTTCCEEECSSSEEECC-------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             HHHEEECCCCCEEEccCcccccccCCc-cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999999999999999987543221 12234567999999999876 5689999999999999999999999975432


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhh-----hhcC--CCc--HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHI-----VVED--VSS--IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......... ... ......+.......     ....  ...  ......+..+.+++.+||+.||.+|||++|+++
T Consensus       207 ~~~~~~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  281 (324)
T 3mtl_A          207 EEQLHFIFR-ILG-TPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK  281 (324)
T ss_dssp             HHHHHHHHH-HHC-CCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHHH-HhC-CCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence            111100000 000 00000011110000     0000  000  011134567889999999999999999999986

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=261.33  Aligned_cols=215  Identities=20%  Similarity=0.239  Sum_probs=158.1

Q ss_pred             CCCcccceeeEEEEeCC-----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            2 MSHNHILKLIGCCLETP-----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~-----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      ++||||+++++++....     ..++|||++. ++|.+++.....   ..+++..+..++.|++.||+|||   +.+++|
T Consensus        71 ~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~al~~lH---~~~ivH  143 (308)
T 3g33_A           71 FEHPNVVRLMDVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPP---PGLPAETIKDLMRQFLRGLDFLH---ANCIVH  143 (308)
T ss_dssp             HCCTTBCCEEEEEEECCSSSEEEEEEEEECCC-CBHHHHHHTCCT---TCSCHHHHHHHHHHHHHHHHHHH---HTTCCC
T ss_pred             cCCCCeEEeeeeeeccCCCCceeEEEEehhhh-cCHHHHHhhccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCccc
Confidence            36999999999998765     4789999997 799999987643   45899999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      +||||+||+++.++.+||+|||++.......  ......||+.|+|||++.+..++.++||||||+++|+|++|..||..
T Consensus       144 ~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~  221 (308)
T 3g33_A          144 RDLKPENILVTSGGTVKLADFGLARIYSYQM--ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCG  221 (308)
T ss_dssp             SCCCTTTEEECTTSCEEECSCSCTTTSTTCC--CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCHHHEEEcCCCCEEEeeCccccccCCCc--ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999987653322  23456789999999999989999999999999999999999999865


Q ss_pred             ccccccccccchhhhhhhhhccchhhhh---hhhhhcCCCcH---HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIV---DHIVVEDVSSI---EKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ............. ... .....+....   ...........   .....++.+.++|.+||+.||.+|||+.|+++
T Consensus       222 ~~~~~~~~~i~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          222 NSEADQLGKIFDL-IGL-PPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             SSHHHHHHHHHHH-HCC-CCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCHHHHHHHHHHH-hCC-CChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence            4322111000000 000 0000000000   00000000000   01134567889999999999999999999986

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=2.1e-39  Score=255.57  Aligned_cols=199  Identities=23%  Similarity=0.318  Sum_probs=157.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+++..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        61 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~  132 (276)
T 2yex_A           61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-----IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIK  132 (276)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBTT-----TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hcCCCCceeeeeEEEcCCEEEEEEEecCCCcHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCC
Confidence            478999999999999999999999999999999998754     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+||+++.++.++|+|||.+....... ........|++.|+|||.+.+..+ +.++||||||+++|+|++|..||....
T Consensus       133 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  212 (276)
T 2yex_A          133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS  212 (276)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSC
T ss_pred             hHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCc
Confidence            999999999999999999987543221 122334568999999999987665 778999999999999999999986533


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......       .         ..    .............+..+.+++.+||+.||.+|||++|+++
T Consensus       213 ~~~~~~-------~---------~~----~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          213 DSCQEY-------S---------DW----KEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             TTSHHH-------H---------HH----HTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             hHHHHH-------H---------Hh----hhcccccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence            211100       0         00    0000000001234567889999999999999999999975

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.9e-39  Score=261.34  Aligned_cols=196  Identities=20%  Similarity=0.283  Sum_probs=160.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        71 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dik  142 (321)
T 2a2a_A           71 QVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQK-----ESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLK  142 (321)
T ss_dssp             HCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC-----SCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCcceEEEEEecCCEEEEEEEcCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence            368999999999999999999999999999999999765     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCC----ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEEN----VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+||+++.++    .++|+|||++.......  ......|++.|+|||.+.+..++.++||||||+++|+|++|..||..
T Consensus       143 p~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  220 (321)
T 2a2a_A          143 PENIMLLDKNIPIPHIKLIDFGLAHEIEDGV--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG  220 (321)
T ss_dssp             GGGEEESCTTSSSCCEEECCCTTCEECCTTC--CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             hHHEEEecCCCCcCCEEEccCccceecCccc--cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCC
Confidence            9999999888    79999999987654332  12345689999999999988899999999999999999999999854


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcC--CCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED--VSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                     .+.........  .........+..+.++|.+||+.||.+|||+.|+++
T Consensus       221 ~~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          221 DTK---------------------QETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             SSH---------------------HHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred             CCH---------------------HHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            221                     01111111111  111112244567899999999999999999999986

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=2.4e-40  Score=276.18  Aligned_cols=201  Identities=18%  Similarity=0.208  Sum_probs=159.6

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||++++++|.+....++||||+++|+|.+++....    ..+++..++.++.|++.||.|||   +.+|+||||||
T Consensus       131 ~~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~~----~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp  203 (437)
T 4aw2_A          131 GDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFE----DRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKP  203 (437)
T ss_dssp             SCTTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTTT----TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred             CCCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHHHHHcc----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCH
Confidence            689999999999999999999999999999999998642    56899999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc-----cCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      +|||++.++.+||+|||+++..............||+.|+|||++.     ...++.++||||||+++|||++|..||..
T Consensus       204 ~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~  283 (437)
T 4aw2_A          204 DNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYA  283 (437)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             HHeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999766444433344567999999999987     45689999999999999999999999864


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCC--CCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPAD--RPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~ell~  227 (239)
                      ......                 ...+........... .....++.++++|.+||..+|.+  ||+++|+++
T Consensus       284 ~~~~~~-----------------~~~i~~~~~~~~~p~-~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~  338 (437)
T 4aw2_A          284 ESLVET-----------------YGKIMNHKERFQFPT-QVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK  338 (437)
T ss_dssp             SSHHHH-----------------HHHHHTHHHHCCCCS-SCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred             CChhHH-----------------HHhhhhccccccCCc-ccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence            221000                 001110000000000 00124567899999999998888  999999875

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=1.5e-39  Score=264.87  Aligned_cols=193  Identities=21%  Similarity=0.301  Sum_probs=158.2

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+....++||||+++|+|.+++...     ..+++..+..++.|++.||.|||   +++|+||||||+
T Consensus        79 ~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~  150 (353)
T 2i0e_A           79 KPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-----GRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLD  150 (353)
T ss_dssp             CCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGG
T ss_pred             CCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHH
Confidence            7999999999999999999999999999999999865     56899999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      ||+++.++.+||+|||++....... .......||+.|+|||++.+..++.++|+||||+++|+|++|..||....    
T Consensus       151 NIll~~~g~vkL~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~----  225 (353)
T 2i0e_A          151 NVMLDSEGHIKIADFGMCKENIWDG-VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED----  225 (353)
T ss_dssp             GEEECTTSCEEECCCTTCBCCCCTT-CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS----
T ss_pred             HEEEcCCCcEEEEeCCcccccccCC-cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCC----
Confidence            9999999999999999987532221 22345679999999999998899999999999999999999999985322    


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-----MVDVAK  227 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~ell~  227 (239)
                                       ..+....+.......  +...+..+.++|.+||..||.+||+     ++++++
T Consensus       226 -----------------~~~~~~~i~~~~~~~--p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~  276 (353)
T 2i0e_A          226 -----------------EDELFQSIMEHNVAY--PKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  276 (353)
T ss_dssp             -----------------HHHHHHHHHHCCCCC--CTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred             -----------------HHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence                             111222222222111  1245677899999999999999995     466654

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=3.4e-40  Score=265.32  Aligned_cols=218  Identities=19%  Similarity=0.217  Sum_probs=157.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC-CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++||||+++++++.+.+..++||||++ ++|.+++..... .....++...+..++.|++.||.|||   +.+++|+||
T Consensus        59 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dl  134 (317)
T 2pmi_A           59 ELKHENIVRLYDVIHTENKLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDL  134 (317)
T ss_dssp             TCCBTTBCCEEEEECCTTEEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCC
T ss_pred             hcCCCCcceEEEEEEECCeEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCC
Confidence            4789999999999999999999999998 799998875421 11135889999999999999999999   899999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      ||+||+++.++.+||+|||++....... .......+|+.|+|||++.+. .++.++||||||+++|+|++|..||....
T Consensus       135 kp~NIl~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  213 (317)
T 2pmi_A          135 KPQNLLINKRGQLKLGDFGLARAFGIPV-NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTN  213 (317)
T ss_dssp             CGGGEEECTTCCEEECCCSSCEETTSCC-CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ChHHeEEcCCCCEEECcCccceecCCCc-ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999987653221 122345689999999998764 58999999999999999999999997543


Q ss_pred             ccccccccc-------hhhhhhhhhccch--------hhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          159 DVHDLVCPF-------SEYLKNCFEDNRF--------TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       159 ~~~~~~~~~-------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      .........       ...+........+        ............    ....+..+.+++.+||+.||.+|||++
T Consensus       214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~li~~~L~~dP~~Rpt~~  289 (317)
T 2pmi_A          214 DEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHT----KEPLDGNLMDFLHGLLQLNPDMRLSAK  289 (317)
T ss_dssp             HHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGC----SSCCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             hHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccc----cccCCHHHHHHHHHHCCCCcccCCCHH
Confidence            221110000       0000000000000        000000000000    012346789999999999999999999


Q ss_pred             HHHH
Q 044155          224 DVAK  227 (239)
Q Consensus       224 ell~  227 (239)
                      |+++
T Consensus       290 e~l~  293 (317)
T 2pmi_A          290 QALH  293 (317)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            9985

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=4.7e-40  Score=267.68  Aligned_cols=193  Identities=23%  Similarity=0.352  Sum_probs=154.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+++..++||||+. |+|.+++....    ..+++..+..++.|++.||.|||   +.+++|+|||
T Consensus       110 ~l~hpniv~~~~~~~~~~~~~lv~e~~~-g~l~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlk  181 (348)
T 1u5q_A          110 KLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHK----KPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVK  181 (348)
T ss_dssp             HCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCS
T ss_pred             hCCCCCEeeEEEEEEECCeEEEEEecCC-CCHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCC
Confidence            3789999999999999999999999997 78888886532    56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc---cCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR---TGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++.+||+|||++.....     .....|++.|+|||++.   ...++.++||||||+++|+|++|..||...
T Consensus       182 p~NIll~~~~~~kL~DfG~a~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~  256 (348)
T 1u5q_A          182 AGNILLSEPGLVKLGDFGSASIMAP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  256 (348)
T ss_dssp             GGGEEEETTTEEEECCCTTCBSSSS-----BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             HHHEEECCCCCEEEeeccCceecCC-----CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999999866532     22456899999999985   456889999999999999999999998543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                     ..................+..+.++|.+||+.||.+|||++++++
T Consensus       257 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~  305 (348)
T 1u5q_A          257 NAMS---------------------ALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK  305 (348)
T ss_dssp             CHHH---------------------HHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             ChHH---------------------HHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence            2110                     000111111100111234567889999999999999999999975

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=5.3e-40  Score=260.83  Aligned_cols=206  Identities=24%  Similarity=0.443  Sum_probs=160.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.. .++|+||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        77 ~l~h~~i~~~~~~~~~~~-~~~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dik  148 (291)
T 1u46_A           77 SLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQ----GHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLA  148 (291)
T ss_dssp             HCCCTTBCCEEEEECSSS-CEEEEECCTTCBHHHHHHHHG----GGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred             hCCCCCcccEEEEEccCC-ceeeEecccCCCHHHHHHhcc----CCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCc
Confidence            368999999999997765 789999999999999997642    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.++|+|||++.........  ......+++.|+|||.+.+..++.++||||||+++|+|++ |..||...
T Consensus       149 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  228 (291)
T 1u46_A          149 ARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL  228 (291)
T ss_dssp             GGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             hheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC
Confidence            99999999999999999998766433221  2234456778999999988889999999999999999999 98887543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ..                     .+..................+..+.+++.+||+.||.+|||+.++++.|+++...
T Consensus       229 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  285 (291)
T 1u46_A          229 NG---------------------SQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT  285 (291)
T ss_dssp             CH---------------------HHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             CH---------------------HHHHHHHHccCCCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence            21                     1111111111111111124456789999999999999999999999999987543

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.1e-39  Score=259.85  Aligned_cols=218  Identities=19%  Similarity=0.236  Sum_probs=155.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        58 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-----~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlk  129 (311)
T 4agu_A           58 QLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQ-----RGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVK  129 (311)
T ss_dssp             HCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTS-----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCccchhheeecCCeEEEEEEeCCCchHHHHHhhh-----cCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCC
Confidence            378999999999999999999999999999998888755     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||.+....... .......+++.|+|||.+.+ ..++.++||||||+++|+|++|..||.....
T Consensus       130 p~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  208 (311)
T 4agu_A          130 PENILITKHSVIKLCDFGFARLLTGPS-DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSD  208 (311)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECC-------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             hhhEEEcCCCCEEEeeCCCchhccCcc-cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999999999999999987654222 12234568899999999876 5689999999999999999999999975443


Q ss_pred             cccccc------cchhhhhhhhhccchhhhhhhhhhcCCCcHH--HHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVC------PFSEYLKNCFEDNRFTEIVDHIVVEDVSSIE--KEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......      .........+....+................  ....+..+.+++.+||+.||.+|||++|+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          209 VDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            211110      0000000001110000000000000000000  0134567889999999999999999999985

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=2.1e-39  Score=256.10  Aligned_cols=193  Identities=21%  Similarity=0.383  Sum_probs=155.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        65 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlk  136 (279)
T 3fdn_A           65 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-----SKFDEQRTATYITELANALSYCH---SKRVIHRDIK  136 (279)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCC
T ss_pred             cCCCCCCcchhheEecCCEEEEEEecCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCEecccCC
Confidence            478999999999999999999999999999999999765     56889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++......   ......+++.|+|||.+.+..++.++||||||+++|+|++|..||..... 
T Consensus       137 p~Nili~~~~~~~l~Dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-  212 (279)
T 3fdn_A          137 PENLLLGSAGELKIADFGWSVHAPSS---RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY-  212 (279)
T ss_dssp             GGGEEECTTSCEEECSCCEESCC-----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH-
T ss_pred             hHhEEEcCCCCEEEEeccccccCCcc---cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcH-
Confidence            99999999999999999987544322   22345689999999999988899999999999999999999998853221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          .+...........  .+...+..+.+++.+||+.||.+|||++|+++
T Consensus       213 --------------------~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~  257 (279)
T 3fdn_A          213 --------------------QETYKRISRVEFT--FPDFVTEGARDLISRLLKHNPSQRPMLREVLE  257 (279)
T ss_dssp             --------------------HHHHHHHHHTCCC--CCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             --------------------HHHHHHHHhCCCC--CCCcCCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence                                1111111111110  01134567889999999999999999999997

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.8e-40  Score=271.59  Aligned_cols=227  Identities=18%  Similarity=0.179  Sum_probs=166.7

Q ss_pred             CCCCcccceeeEEEEeCC--CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLETP--IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~--~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++....  ..++||||+++++|.+++......  ..++...+..++.|++.||+|||   +.+++|+|
T Consensus        63 ~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~D  137 (396)
T 4eut_A           63 KLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNA--YGLPESEFLIVLRDVVGGMNHLR---ENGIVHRN  137 (396)
T ss_dssp             HCCCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTSGGGT--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCC
T ss_pred             hcCCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHhhhcc--cCCCHHHHHHHHHHHHHHHHHHH---HCCEEECC
Confidence            368999999999998765  678999999999999999764321  33899999999999999999999   89999999


Q ss_pred             ccCcceee----cCCCceeEcccccccccCCCCcceeecccccccccCcccccc--------CCcccccchhhhhhHHHH
Q 044155           79 FKTSCILF----NEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT--------GVFNEKSNVFSFSVFLFE  146 (239)
Q Consensus        79 lk~~nil~----~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--------~~~~~~~Di~slG~~l~~  146 (239)
                      |||+||++    +.++.+||+|||++.......  ......|++.|+|||++..        ..++.++||||||+++|+
T Consensus       138 lkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~e  215 (396)
T 4eut_A          138 IKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE--QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYH  215 (396)
T ss_dssp             CCGGGEEEEECTTSCEEEEECCGGGCEECCCGG--GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHEEEeecCCCceeEEEecCCCceEccCCC--ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHH
Confidence            99999999    777789999999997654322  2234568999999999865        457889999999999999


Q ss_pred             HhcCCCCcccccccccccccchhhhhhhhhccchhhh-------hhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCC
Q 044155          147 LLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEI-------VDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       147 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R  219 (239)
                      |++|..||....................... .+...       +.....-..........+..+.+++.+||+.||.+|
T Consensus       216 l~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R  294 (396)
T 4eut_A          216 AATGSLPFRPFEGPRRNKEVMYKIITGKPSG-AISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKC  294 (396)
T ss_dssp             HHHSSCSEECTTCTTTCHHHHHHHHHSCCTT-CCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTS
T ss_pred             HHHCCCCCCCCCcccchHHHHHHHhcCCCcc-cchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhh
Confidence            9999999975443221111111111100000 00000       000000001111224677889999999999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 044155          220 PSMVDVAKKLRQIYRS  235 (239)
Q Consensus       220 ps~~ell~~L~~l~~~  235 (239)
                      ||++++++.+.+++..
T Consensus       295 ~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          295 WGFDQFFAETSDILHR  310 (396)
T ss_dssp             CCHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHhhc
Confidence            9999999999988764

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=1.3e-39  Score=284.37  Aligned_cols=206  Identities=23%  Similarity=0.309  Sum_probs=161.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++. .+..++||||+++|+|.+++....    ..+++..+..++.|++.||.|||   +++++|||||
T Consensus       447 ~l~HpnIv~l~~~~~-~~~~~lv~E~~~~g~L~~~l~~~~----~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDik  518 (656)
T 2j0j_A          447 QFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRK----FSLDLASLILYAYQLSTALAYLE---SKRFVHRDIA  518 (656)
T ss_dssp             HCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHHHHHHTT----TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             hCCCCCCCeEEEEEe-cCceEEEEEcCCCCcHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHH---hCCccccccc
Confidence            368999999999984 456899999999999999998653    45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||++...............+++.|+|||++.+..++.++||||||+++|||++ |..||.....
T Consensus       519 p~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~  598 (656)
T 2j0j_A          519 ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN  598 (656)
T ss_dssp             GGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred             hHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH
Confidence            999999999999999999997664433323334456789999999998899999999999999999997 8888754321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      .                     +.......... ...+...++.+.+++.+||+.||.+|||+.++++.|+++..+.
T Consensus       599 ~---------------------~~~~~i~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~~  653 (656)
T 2j0j_A          599 N---------------------DVIGRIENGER-LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE  653 (656)
T ss_dssp             H---------------------HHHHHHHHTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             H---------------------HHHHHHHcCCC-CCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence            1                     11111111110 0111244567899999999999999999999999999987653

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=7.2e-39  Score=254.86  Aligned_cols=213  Identities=16%  Similarity=0.184  Sum_probs=162.9

Q ss_pred             CCCcccceeeEEE-EeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MSHNHILKLIGCC-LETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~H~niv~l~~~~-~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++|++++..+.++ ..+...++||||+ +++|.+++....    ..++...+..++.|++.||.|||   +++++|+|||
T Consensus        61 l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlk  132 (296)
T 3uzp_A           61 MQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCS----RKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVK  132 (296)
T ss_dssp             HTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred             hhcCCCCCccccccCCCCceEEEEEec-CCCHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCC
Confidence            5677766666655 5666779999999 799999997543    56899999999999999999999   8999999999


Q ss_pred             Ccceeec---CCCceeEcccccccccCCCCc------ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCC
Q 044155           81 TSCILFN---EENVAKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        81 ~~nil~~---~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      |+||+++   .++.+||+|||++........      .......|++.|+|||.+.+..++.++||||||+++|+|++|.
T Consensus       133 p~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  212 (296)
T 3uzp_A          133 PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS  212 (296)
T ss_dssp             GGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCC
Confidence            9999994   788999999999876543322      1124557899999999999989999999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||...........              ............ ........++.+.+++.+||+.||.+|||+.++++.|++
T Consensus       213 ~pf~~~~~~~~~~~--------------~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~  277 (296)
T 3uzp_A          213 LPWQGLKAATKRQK--------------YERISEKKMSTP-IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRN  277 (296)
T ss_dssp             CTTSSCCCSSSSSH--------------HHHHHHHHHHSC-HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHH
T ss_pred             CCCCCcCchhhhhh--------------hhhhcccccCCc-hHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHH
Confidence            99875432211100              000000000000 000112345678999999999999999999999999999


Q ss_pred             HHHhhc
Q 044155          232 IYRSLS  237 (239)
Q Consensus       232 l~~~~~  237 (239)
                      +.....
T Consensus       278 ~~~~~~  283 (296)
T 3uzp_A          278 LFHRQG  283 (296)
T ss_dssp             HHHHTT
T ss_pred             HHHhcC
Confidence            987754

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=1e-39  Score=262.83  Aligned_cols=209  Identities=19%  Similarity=0.356  Sum_probs=163.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC-----CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-----PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~-----~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++.++...++||||+++++|.+++.....     .....++...+..++.|++.||.|||   +++++
T Consensus        84 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~  160 (322)
T 1p4o_A           84 EFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFV  160 (322)
T ss_dssp             GCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCB
T ss_pred             hcCCCCEeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCc
Confidence            47899999999999999999999999999999999875311     01135688999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCC
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDV  153 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p  153 (239)
                      |+||||+||+++.++.++|+|||++........ .......+++.|+|||.+.+..++.++||||||+++|+|++ |..|
T Consensus       161 H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p  240 (322)
T 1p4o_A          161 HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP  240 (322)
T ss_dssp             CSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCT
T ss_pred             cCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999875432221 11223456788999999998889999999999999999999 7778


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      |.....                     .+........... ..+...+..+.+++.+||+.||.+|||+.|+++.|+++.
T Consensus       241 ~~~~~~---------------------~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~  298 (322)
T 1p4o_A          241 YQGLSN---------------------EQVLRFVMEGGLL-DKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEM  298 (322)
T ss_dssp             TTTSCH---------------------HHHHHHHHTTCCC-CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred             cccCCH---------------------HHHHHHHHcCCcC-CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhh
Confidence            754321                     1111111111110 001244567899999999999999999999999998764


Q ss_pred             H
Q 044155          234 R  234 (239)
Q Consensus       234 ~  234 (239)
                      .
T Consensus       299 ~  299 (322)
T 1p4o_A          299 E  299 (322)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=4.4e-40  Score=266.00  Aligned_cols=217  Identities=14%  Similarity=0.174  Sum_probs=151.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.++...++||||++ ++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        89 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~-----~~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlk  159 (329)
T 3gbz_A           89 ELQHRNIIELKSVIHHNHRLHLIFEYAE-NDLKKYMDKN-----PDVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLK  159 (329)
T ss_dssp             GCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHC-----TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             HcCCCCcceEEEEEecCCEEEEEEecCC-CCHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCC
Confidence            4789999999999999999999999998 6999999876     56889999999999999999999   8999999999


Q ss_pred             Ccceeec-----CCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCc
Q 044155           81 TSCILFN-----EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        81 ~~nil~~-----~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+||+++     .++.+||+|||++....... .......+|+.|+|||++.+. .++.++||||||+++|+|++|..||
T Consensus       160 p~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf  238 (329)
T 3gbz_A          160 PQNLLLSVSDASETPVLKIGDFGLARAFGIPI-RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLF  238 (329)
T ss_dssp             GGGEEEEC-----CCEEEECCTTHHHHHC------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             HHHEEEecCCCCccceEEECcCCCccccCCcc-cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCc
Confidence            9999995     44569999999987653221 123345679999999999875 4899999999999999999999998


Q ss_pred             ccccccccccccch-------hhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          155 DLVKDVHDLVCPFS-------EYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       155 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..............       ...........+....................+..+.++|.+||+.||.+|||++|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          239 PGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence            65432211110000       00000000000000000000000000011124567899999999999999999999986

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.8e-39  Score=263.76  Aligned_cols=208  Identities=23%  Similarity=0.243  Sum_probs=155.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----------------------------------CCC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----------------------------------HFE   45 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----------------------------------~~~   45 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++......                                   ...
T Consensus        84 ~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (345)
T 3hko_A           84 KLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDF  163 (345)
T ss_dssp             HCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCH
T ss_pred             hCCCCCcceeehhhccCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            368999999999999999999999999999999988521000                                   002


Q ss_pred             cCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCC--ceeEcccccccccCC---CCcceeecccccccc
Q 044155           46 PLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEEN--VAKLFDFSLSISIPE---GETHITDTVMGTLGY  120 (239)
Q Consensus        46 ~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~--~~~l~dfg~~~~~~~---~~~~~~~~~~~~~~y  120 (239)
                      .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++  .+||+|||++.....   ..........|++.|
T Consensus       164 ~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y  240 (345)
T 3hko_A          164 VQREKLISNIMRQIFSALHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYF  240 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGG
T ss_pred             cccHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccc
Confidence            3457778889999999999999   89999999999999998776  899999999875432   111223456689999


Q ss_pred             cCcccccc--CCcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHH
Q 044155          121 CAPEYMRT--GVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIE  196 (239)
Q Consensus       121 ~aPE~~~~--~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  196 (239)
                      +|||++.+  ..++.++||||||+++|+|++|..||......                     +..........  ....
T Consensus       241 ~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---------------------~~~~~~~~~~~~~~~~~  299 (345)
T 3hko_A          241 VAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDA---------------------DTISQVLNKKLCFENPN  299 (345)
T ss_dssp             CCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---------------------HHHHHHHHCCCCTTSGG
T ss_pred             cCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChH---------------------HHHHHHHhcccccCCcc
Confidence            99999875  56889999999999999999999998643311                     11111111111  1111


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH--HHHHH
Q 044155          197 KEQQLHASAQVTFECIKDSPADRPSMVDVAK--KLRQI  232 (239)
Q Consensus       197 ~~~~~~~~~~li~~cl~~dp~~Rps~~ell~--~L~~l  232 (239)
                      ....++.+.++|.+||+.||.+|||+.++++  ++.++
T Consensus       300 ~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~hp~~~~~  337 (345)
T 3hko_A          300 YNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQF  337 (345)
T ss_dssp             GGGSCHHHHHHHHHHSCSCTTTSCCHHHHHHSHHHHTT
T ss_pred             cccCCHHHHHHHHHHcCCChhHCCCHHHHhcChhhccC
Confidence            1234567899999999999999999999987  44443

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=2.5e-39  Score=256.19  Aligned_cols=196  Identities=23%  Similarity=0.347  Sum_probs=158.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+.+...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        61 ~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dik  132 (284)
T 3kk8_A           61 KLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR-----EFYSEADASHCIQQILESIAYCH---SNGIVHRNLK  132 (284)
T ss_dssp             HCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred             HcCCCCcCeEEEEEEcCCEEEEEEecCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCC
Confidence            368999999999999999999999999999999988765     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCc---eeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENV---AKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~---~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++.   ++|+|||.+.......  ......|++.|+|||.+.+..++.++||||||+++|+|++|..||...
T Consensus       133 p~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  210 (284)
T 3kk8_A          133 PENLLLASKAKGAAVKLADFGLAIEVNDSE--AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  210 (284)
T ss_dssp             GGGEEESSSSTTCCEEECCCTTCEECCSSC--BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHHEEEecCCCCCcEEEeeceeeEEcccCc--cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC
Confidence            99999987665   9999999987654332  123456899999999999989999999999999999999999998532


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                     ...........  ........++.+.+++.+||+.||.+|||+.|+++
T Consensus       211 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          211 DQH---------------------RLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK  261 (284)
T ss_dssp             SHH---------------------HHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             chh---------------------HHHHHHHhccccCCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            210                     11111111111  01111234567889999999999999999999987

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=2.6e-39  Score=276.59  Aligned_cols=199  Identities=21%  Similarity=0.293  Sum_probs=161.0

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+....++||||+++|+|.+++.....   ..+++..+..++.||+.||.|||   +++|+||||||
T Consensus       241 l~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~~---~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKP  314 (576)
T 2acx_A          241 VNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQ---AGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKP  314 (576)
T ss_dssp             CCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHSSSS---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCG
T ss_pred             cCCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCch
Confidence            6899999999999999999999999999999999976532   45899999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +|||++.++.+||+|||++.......  ......||+.|+|||++.+..++.++|+||||+++|+|++|..||.......
T Consensus       315 eNILld~~g~vKL~DFGla~~~~~~~--~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~  392 (576)
T 2acx_A          315 ENILLDDHGHIRISDLGLAVHVPEGQ--TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI  392 (576)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTC--CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC
T ss_pred             heEEEeCCCCeEEEecccceecccCc--cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccch
Confidence            99999999999999999997764332  2334579999999999998889999999999999999999999986432110


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                      .                 .......+......  .+...+..+.++|.+||+.||.+||     +++|+++
T Consensus       393 ~-----------------~~~i~~~i~~~~~~--~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          393 K-----------------REEVERLVKEVPEE--YSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             C-----------------HHHHHHHHHHCCCC--CCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred             h-----------------HHHHHHHhhccccc--CCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence            0                 01111111111111  0124457789999999999999999     7888875

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=255.80  Aligned_cols=196  Identities=22%  Similarity=0.327  Sum_probs=138.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        67 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~  139 (278)
T 3cok_A           67 QLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRV----KPFSENEARHFMHQIITGMLYLH---SHGILHRDLT  139 (278)
T ss_dssp             TBCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHTCS----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCC
T ss_pred             hCCCCCeEeEEEEEccCCeEEEEEecCCCCcHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCC
Confidence            4789999999999999999999999999999999998643    56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+....... .......+++.|+|||.+.+..++.++||||||+++|+|++|..||......
T Consensus       140 p~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  218 (278)
T 3cok_A          140 LSNLLLTRNMNIKIADFGLATQLKMPH-EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK  218 (278)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECC-----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC
T ss_pred             HHHEEEcCCCCEEEEeecceeeccCCC-CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHH
Confidence            999999999999999999987653222 1223456889999999999888999999999999999999999998643211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                     .........  +...+..+.+++.+||+.||.+|||++++++
T Consensus       219 ~~~~---------------------~~~~~~~~~--~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          219 NTLN---------------------KVVLADYEM--PSFLSIEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             --------------------------CCSSCCCC--CTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             HHHH---------------------HHhhcccCC--ccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence            1100                     000000000  0123456889999999999999999999986

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=260.84  Aligned_cols=204  Identities=15%  Similarity=0.160  Sum_probs=162.9

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .|+||+++++++...+..++||||+++|+|.+++..........+++..+..++.|++.||+|||   +++|+||||||+
T Consensus       125 ~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~  201 (365)
T 3e7e_A          125 MQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPD  201 (365)
T ss_dssp             GGGGBCCEEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGG
T ss_pred             hhhhhhhhheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHH
Confidence            49999999999999999999999999999999997532211256899999999999999999999   999999999999


Q ss_pred             ceeecC-----------CCceeEcccccccccCC-CCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcC
Q 044155           83 CILFNE-----------ENVAKLFDFSLSISIPE-GETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG  150 (239)
Q Consensus        83 nil~~~-----------~~~~~l~dfg~~~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g  150 (239)
                      |||++.           ++.+||+|||++..... ..........||+.|+|||++.+..++.++||||||+++|+|++|
T Consensus       202 NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg  281 (365)
T 3e7e_A          202 NFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFG  281 (365)
T ss_dssp             GEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHS
T ss_pred             HEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhC
Confidence            999998           88999999999965431 122234456799999999999998999999999999999999999


Q ss_pred             CCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-CHHHHHHHH
Q 044155          151 WDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-SMVDVAKKL  229 (239)
Q Consensus       151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-s~~ell~~L  229 (239)
                      +.||..........                    ...... .      ..++.+.+++..|++.+|.+|+ ++.++.+.|
T Consensus       282 ~~pf~~~~~~~~~~--------------------~~~~~~-~------~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l  334 (365)
T 3e7e_A          282 TYMKVKNEGGECKP--------------------EGLFRR-L------PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKL  334 (365)
T ss_dssp             SCCCEEEETTEEEE--------------------CSCCTT-C------SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHH
T ss_pred             CCccccCCCCceee--------------------chhccc-c------CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHH
Confidence            99985433211100                    000000 0      1134567899999999999984 788888888


Q ss_pred             HHHHHhh
Q 044155          230 RQIYRSL  236 (239)
Q Consensus       230 ~~l~~~~  236 (239)
                      +++..+.
T Consensus       335 ~~~l~~~  341 (365)
T 3e7e_A          335 KKVFQQH  341 (365)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8877653

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=2.5e-39  Score=261.26  Aligned_cols=210  Identities=20%  Similarity=0.339  Sum_probs=162.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC--CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP--HFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++.+....++||||+++++|.+++......  ....++...+..++.|++.||.|||   +.+++|+|
T Consensus        89 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~d  165 (327)
T 2yfx_A           89 KFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRD  165 (327)
T ss_dssp             HCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred             hCCCCCCCeEEEEEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCc
Confidence            368999999999999999999999999999999999875421  1135889999999999999999999   89999999


Q ss_pred             ccCcceeecCC---CceeEcccccccccCCCC-cceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCC
Q 044155           79 FKTSCILFNEE---NVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDV  153 (239)
Q Consensus        79 lk~~nil~~~~---~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p  153 (239)
                      |||+||+++.+   ..++|+|||++....... ........+++.|+|||.+.+..++.++||||||+++|+|++ |..|
T Consensus       166 lkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p  245 (327)
T 2yfx_A          166 IAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMP  245 (327)
T ss_dssp             CCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             CCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCC
Confidence            99999999844   469999999986543222 122335567889999999988889999999999999999998 8888


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      |.....                     .+........... ......+..+.+++.+||+.||.+|||+.++++.|..+.
T Consensus       246 ~~~~~~---------------------~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~  303 (327)
T 2yfx_A          246 YPSKSN---------------------QEVLEFVTSGGRM-DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  303 (327)
T ss_dssp             STTCCH---------------------HHHHHHHHTTCCC-CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCcCH---------------------HHHHHHHhcCCCC-CCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHh
Confidence            753221                     0111111111000 001234567889999999999999999999999999876


Q ss_pred             Hh
Q 044155          234 RS  235 (239)
Q Consensus       234 ~~  235 (239)
                      ..
T Consensus       304 ~~  305 (327)
T 2yfx_A          304 QD  305 (327)
T ss_dssp             HC
T ss_pred             cC
Confidence            53

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=5.9e-39  Score=254.16  Aligned_cols=193  Identities=22%  Similarity=0.330  Sum_probs=158.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        70 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~  141 (284)
T 2vgo_A           70 HLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH-----GRFDEQRSATFMEELADALHYCH---ERKVIHRDIK  141 (284)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCS
T ss_pred             cCCCCCEeeEEEEEEcCCEEEEEEEeCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCC
Confidence            478999999999999999999999999999999999865     56889999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++.......   .....|++.|+|||.+.+..++.++||||||+++|+|++|..||......
T Consensus       142 p~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  218 (284)
T 2vgo_A          142 PENLLMGYKGELKIADFGWSVHAPSLR---RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT  218 (284)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECSSSC---BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             HHHEEEcCCCCEEEecccccccCcccc---cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh
Confidence            999999999999999999986543221   23456899999999999888999999999999999999999998643210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           +...........  .+...+..+.+++.+||+.||.+|||++++++
T Consensus       219 ---------------------~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          219 ---------------------ETHRRIVNVDLK--FPPFLSDGSKDLISKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             ---------------------HHHHHHHTTCCC--CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ---------------------HHHHHHhccccC--CCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence                                 001111111110  01134567889999999999999999999987

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=6e-39  Score=267.26  Aligned_cols=196  Identities=21%  Similarity=0.308  Sum_probs=148.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.. ...++||||+++++|.+++...     ..+++..+..++.|++.||+|||   +++++|||||
T Consensus       196 ~l~hpniv~l~~~~~~-~~~~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlk  266 (419)
T 3i6u_A          196 KLNHPCIIKIKNFFDA-EDYYIVLELMEGGELFDKVVGN-----KRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLK  266 (419)
T ss_dssp             HCCCTTBCCCCEEEES-SEEEEEEECCTTCBGGGGTSSS-----CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCCEeeEEEEEec-CceEEEEEcCCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence            3789999999999854 4578999999999999998765     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCC---ceeEcccccccccCCCCcceeecccccccccCcccccc---CCcccccchhhhhhHHHHHhcCCCCc
Q 044155           81 TSCILFNEEN---VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT---GVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        81 ~~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+||+++.++   .+||+|||++......  .......||+.|+|||++.+   ..++.++||||||+++|+|++|..||
T Consensus       267 p~NIll~~~~~~~~~kl~DFG~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf  344 (419)
T 3i6u_A          267 PENVLLSSQEEDCLIKITDFGHSKILGET--SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPF  344 (419)
T ss_dssp             GGGEEESSSSSSCCEEECCSSTTTSCC-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             hHhEEEecCCCcceEEEeecccceecCCC--ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCC
Confidence            9999997654   4999999999765332  22345678999999999864   56788999999999999999999998


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .........                    .........  .+......++.+.++|.+||+.||.+|||++|+++
T Consensus       345 ~~~~~~~~~--------------------~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          345 SEHRTQVSL--------------------KDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  399 (419)
T ss_dssp             CCCSSSCCH--------------------HHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCCcchHHH--------------------HHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence            643221111                    000111111  11111234677899999999999999999999986

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.1e-39  Score=263.58  Aligned_cols=198  Identities=21%  Similarity=0.279  Sum_probs=157.1

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++......++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+||||+
T Consensus       117 ~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~  188 (355)
T 1vzo_A          117 QSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR-----ERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLE  188 (355)
T ss_dssp             TCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGG
T ss_pred             CCCceeEEEEEEeeCceEEEEeecCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHH
Confidence            6999999999999999999999999999999999865     56889999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc--CCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT--GVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      ||+++.++.+||+|||+++..............||+.|+|||++.+  ..++.++||||||+++|+|++|..||......
T Consensus       189 NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~  268 (355)
T 1vzo_A          189 NILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK  268 (355)
T ss_dssp             GEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC
T ss_pred             HEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCcc
Confidence            9999999999999999987654333333445678999999999985  34788999999999999999999998643211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                      ..                 ..............  .+...+..+.++|.+||..||.+||     |++|+++
T Consensus       269 ~~-----------------~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~  321 (355)
T 1vzo_A          269 NS-----------------QAEISRRILKSEPP--YPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  321 (355)
T ss_dssp             CC-----------------HHHHHHHHHHCCCC--CCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             ch-----------------HHHHHHHHhccCCC--CCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHc
Confidence            11                 01111111111110  1123456788999999999999999     9999886

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.4e-39  Score=256.99  Aligned_cols=199  Identities=21%  Similarity=0.272  Sum_probs=159.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++....    ..++...+..++.|++.||.|||   ..+++|+|||
T Consensus        80 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~  152 (314)
T 3com_A           80 QCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRN----KTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIK  152 (314)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHT----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCCccEEEEEEeCCEEEEEeecCCCCCHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcC
Confidence            4789999999999999999999999999999999987432    56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+....... .......+++.|+|||.+.+..++.++||||||+++|+|++|..||......
T Consensus       153 p~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  231 (314)
T 3com_A          153 AGNILLNTEGHAKLADFGVAGQLTDTM-AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM  231 (314)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECBTTB-SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             HHHEEECCCCCEEEeecccchhhhhhc-cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH
Confidence            999999999999999999987653322 1233456889999999999888999999999999999999999998643211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...        .          ..........  ..+...+..+.+++.+||..||.+|||+.++++
T Consensus       232 ~~~--------~----------~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          232 RAI--------F----------MIPTNPPPTF--RKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             HHH--------H----------HHHHSCCCCC--SSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             HHH--------H----------HHhcCCCccc--CCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            000        0          0000000000  011234567889999999999999999999986

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=7.7e-39  Score=269.58  Aligned_cols=212  Identities=18%  Similarity=0.234  Sum_probs=151.8

Q ss_pred             CCCcccceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            2 MSHNHILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      ++||||+++++++....      ..++||||++ ++|.+.+.       ..++...+..++.|++.||+|||   +.+|+
T Consensus       118 l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~-~~l~~~~~-------~~l~~~~~~~~~~qil~aL~~lH---~~~ii  186 (464)
T 3ttj_A          118 VNHKNIISLLNVFTPQKTLEEFQDVYLVMELMD-ANLCQVIQ-------MELDHERMSYLLYQMLCGIKHLH---SAGII  186 (464)
T ss_dssp             CCCTTBCCCSEEECSCCSTTTCCEEEEEEECCS-EEHHHHHT-------SCCCHHHHHHHHHHHHHHHHHHH---HTTCC
T ss_pred             CCCCCCCcEEEEEccCCccccCCeEEEEEeCCC-CCHHHHHh-------hcCCHHHHHHHHHHHHHHHHHHH---HCCcc
Confidence            68999999999997554      4599999997 57777774       34889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      ||||||+|||++.++.+||+|||+++......  ......||+.|+|||++.+..++.++|||||||++|+|++|+.||.
T Consensus       187 HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~  264 (464)
T 3ttj_A          187 HRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP  264 (464)
T ss_dssp             CCCCCGGGEEECTTSCEEECCCCCC-----CC--CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cCCCChHhEEEeCCCCEEEEEEEeeeecCCCc--ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999987653321  2345678999999999999999999999999999999999999997


Q ss_pred             ccccccccc-------ccchhhhhhh-------hh------ccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCC
Q 044155          156 LVKDVHDLV-------CPFSEYLKNC-------FE------DNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDS  215 (239)
Q Consensus       156 ~~~~~~~~~-------~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~d  215 (239)
                      .........       .+..++....       ..      ...+......... ..........++.+.+|+.+||..|
T Consensus       265 g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~dLl~~mL~~d  343 (464)
T 3ttj_A          265 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLF-PADSEHNKLKASQARDLLSKMLVID  343 (464)
T ss_dssp             CSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGS-CCSSHHHHHHHHHHHHHHHHHSCSS
T ss_pred             CCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCccccc-ccccccccccCHHHHHHHHHHcCCC
Confidence            543221110       0001110000       00      0000111100000 1111222344778999999999999


Q ss_pred             CCCCCCHHHHHH
Q 044155          216 PADRPSMVDVAK  227 (239)
Q Consensus       216 p~~Rps~~ell~  227 (239)
                      |.+|||++|+++
T Consensus       344 P~~R~ta~e~L~  355 (464)
T 3ttj_A          344 PAKRISVDDALQ  355 (464)
T ss_dssp             TTTSCCHHHHHT
T ss_pred             hhhCCCHHHHhc
Confidence            999999999986

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=8.1e-40  Score=263.05  Aligned_cols=206  Identities=18%  Similarity=0.276  Sum_probs=155.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        85 ~l~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlk  157 (319)
T 2y4i_B           85 QTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAK----IVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLK  157 (319)
T ss_dssp             TCCCTTBCCCCEEEECSSCEEEECBCCCSEEHHHHTTSSC----CCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred             cCCCCCEeEEEEEEecCCceEEEeecccCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCC
Confidence            4789999999999999999999999999999999997643    46889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC----cceeecccccccccCcccccc---------CCcccccchhhhhhHHHHH
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE----THITDTVMGTLGYCAPEYMRT---------GVFNEKSNVFSFSVFLFEL  147 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~---------~~~~~~~Di~slG~~l~~~  147 (239)
                      |+||+++ ++.++|+|||++.......    ........|++.|+|||++..         ..++.++||||||+++|+|
T Consensus       158 p~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el  236 (319)
T 2y4i_B          158 SKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYEL  236 (319)
T ss_dssp             STTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHH
T ss_pred             hhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHH
Confidence            9999998 6789999999876542111    112234458899999999874         3478899999999999999


Q ss_pred             hcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          148 LTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       148 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ++|..||......                     ...................+..+.+++.+||..||.+|||+.++++
T Consensus       237 ~~g~~p~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~  295 (319)
T 2y4i_B          237 HAREWPFKTQPAE---------------------AIIWQMGTGMKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMD  295 (319)
T ss_dssp             HHSSCSSSSCCHH---------------------HHHHHHHTTCCCCCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHH
T ss_pred             HhCCCCCCCCCHH---------------------HHHHHhccCCCCCCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            9999998643210                     0000000000000000123456889999999999999999999999


Q ss_pred             HHHHHHHh
Q 044155          228 KLRQIYRS  235 (239)
Q Consensus       228 ~L~~l~~~  235 (239)
                      .|+++...
T Consensus       296 ~l~~l~~~  303 (319)
T 2y4i_B          296 MLEKLPKR  303 (319)
T ss_dssp             HHTTC---
T ss_pred             HHHHHHHh
Confidence            99887654

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=6.9e-40  Score=269.53  Aligned_cols=199  Identities=10%  Similarity=0.091  Sum_probs=151.1

Q ss_pred             CCCCcccceee-------EEEEeCC-----------------CceEEEEEccCCChhhhhhcCCCCC--CCcCCHHHHHH
Q 044155            1 QMSHNHILKLI-------GCCLETP-----------------IPILVFESVQYGTLWDRILGAPQPH--FEPLLLKHRLK   54 (239)
Q Consensus         1 ~l~H~niv~l~-------~~~~~~~-----------------~~~iv~e~~~~~sL~~~l~~~~~~~--~~~~~~~~~~~   54 (239)
                      +++||||++++       +++.+.+                 ..++||||+ +|+|.+++.......  ...+++..+..
T Consensus       132 ~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~  210 (377)
T 3byv_A          132 GIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQ  210 (377)
T ss_dssp             TCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHH
T ss_pred             ccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHH
Confidence            46899999998       6766553                 278999999 589999998642100  02334578888


Q ss_pred             HHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-----
Q 044155           55 IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-----  129 (239)
Q Consensus        55 ~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----  129 (239)
                      ++.|++.||+|||   +++|+||||||+|||++.++.+||+|||++.....    ......| +.|+|||++.+.     
T Consensus       211 i~~qi~~aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~~~~~~~~~  282 (377)
T 3byv_A          211 LTLQVIRLLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGFEPPELEARRATISY  282 (377)
T ss_dssp             HHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTCCCHHHHHHHTSTHH
T ss_pred             HHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCccChhhhcccccccc
Confidence            9999999999999   89999999999999999999999999999875322    2334557 899999999887     


Q ss_pred             ------CcccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHH
Q 044155          130 ------VFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHA  203 (239)
Q Consensus       130 ------~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (239)
                            .++.++||||||+++|+|++|..||..........                     ......      ...++.
T Consensus       283 ~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~~~---------------------~~~~~~------~~~~~~  335 (377)
T 3byv_A          283 HRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGSE---------------------WIFRSC------KNIPQP  335 (377)
T ss_dssp             HHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CCSG---------------------GGGSSC------CCCCHH
T ss_pred             cccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccchh---------------------hhhhhc------cCCCHH
Confidence                  79999999999999999999999986433211110                     000000      123456


Q ss_pred             HHHHHhhhcCCCCCCCCCHHHHHH--HHHHHHHh
Q 044155          204 SAQVTFECIKDSPADRPSMVDVAK--KLRQIYRS  235 (239)
Q Consensus       204 ~~~li~~cl~~dp~~Rps~~ell~--~L~~l~~~  235 (239)
                      +.++|.+||+.||.+|||+.|+++  +++++...
T Consensus       336 ~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~  369 (377)
T 3byv_A          336 VRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTE  369 (377)
T ss_dssp             HHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCchhCCCHHHHhhChHHHHHHHH
Confidence            889999999999999999999996  56555443

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=4.5e-39  Score=255.94  Aligned_cols=201  Identities=22%  Similarity=0.306  Sum_probs=155.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++...+..++||||+++++|.+++......  ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        75 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~  149 (295)
T 2clq_A           75 HLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGP--LKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIK  149 (295)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEEECCSEEEHHHHHHHTTCC--CTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHHHHHHhhccC--CCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCC
Confidence            478999999999999999999999999999999999875332  35678889999999999999999   8999999999


Q ss_pred             CcceeecC-CCceeEcccccccccCCCCcceeecccccccccCccccccCC--cccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNE-ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV--FNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~--~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++. ++.++|+|||.+....... .......|++.|+|||.+.+..  ++.++||||||+++|+|++|..||...
T Consensus       150 p~Nil~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  228 (295)
T 2clq_A          150 GDNVLINTYSGVLKISDFGTSKRLAGIN-PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYEL  228 (295)
T ss_dssp             GGGEEEETTTCCEEECCTTTCEESCC------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGG
T ss_pred             hhhEEEECCCCCEEEeecccccccCCCC-CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCC
Confidence            99999987 8899999999987653321 1233456899999999987643  788999999999999999999998543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......                   ........ .....+...+..+.+++.+||+.||.+|||+.++++
T Consensus       229 ~~~~~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          229 GEPQAA-------------------MFKVGMFK-VHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             SSHHHH-------------------HHHHHHHC-CCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             CchhHH-------------------HHhhcccc-ccccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            211000                   00000000 000011234567889999999999999999999985

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=3.6e-39  Score=266.23  Aligned_cols=194  Identities=18%  Similarity=0.265  Sum_probs=147.9

Q ss_pred             CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcc
Q 044155            4 HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSC   83 (239)
Q Consensus         4 H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~n   83 (239)
                      ||||+++++++......++||| +.+++|.+++...     ..++...+..++.||+.||.|||   +.+|+||||||+|
T Consensus       115 ~~~iv~~~~~~~~~~~~~lv~E-~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~N  185 (390)
T 2zmd_A          115 SDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-----KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPAN  185 (390)
T ss_dssp             CTTBCCEEEEEECSSEEEEEEE-CCSEEHHHHHHHC-----SSCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGG
T ss_pred             CCeEEEEEEEEecCCEEEEEEe-cCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHH
Confidence            6999999999999999999999 5579999999876     56888899999999999999999   9999999999999


Q ss_pred             eeecCCCceeEcccccccccCCCCcc-eeecccccccccCcccccc-----------CCcccccchhhhhhHHHHHhcCC
Q 044155           84 ILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRT-----------GVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        84 il~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~-----------~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      ||++ ++.+||+|||++......... ......||+.|+|||++.+           ..++.++||||||+++|+|++|.
T Consensus       186 Ill~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~  264 (390)
T 2zmd_A          186 FLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK  264 (390)
T ss_dssp             EEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSS
T ss_pred             EEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCC
Confidence            9995 578999999999765433211 2335568999999999865           35888999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .||.......                    ...............+...+..+.++|.+||+.||.+|||+.|+++
T Consensus       265 ~Pf~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~  320 (390)
T 2zmd_A          265 TPFQQIINQI--------------------SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  320 (390)
T ss_dssp             CTTTTCCCHH--------------------HHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CcchhhhHHH--------------------HHHHHHhCccccCCCCccchHHHHHHHHHHcccChhhCCCHHHHhh
Confidence            9985432100                    0001111111000000112456889999999999999999999985

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=9.6e-39  Score=271.91  Aligned_cols=195  Identities=23%  Similarity=0.318  Sum_probs=159.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+.+...     ..+++..+..++.|++.||.|||   +.+++|||||
T Consensus       102 ~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlk  173 (504)
T 3q5i_A          102 SLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINR-----HKFDECDAANIMKQILSGICYLH---KHNIVHRDIK  173 (504)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hCCCCCCCeEEEEEEcCCEEEEEEecCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCc
Confidence            478999999999999999999999999999999998765     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCC---ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEEN---VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++   .+||+|||++.......  ......||+.|+|||++. ..++.++||||||+++|+|++|..||...
T Consensus       174 p~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~  250 (504)
T 3q5i_A          174 PENILLENKNSLLNIKIVDFGLSSFFSKDY--KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQ  250 (504)
T ss_dssp             GGGEEESSTTCCSSEEECCCTTCEECCTTS--CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHHEEEecCCCCccEEEEECCCCEEcCCCC--ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999876   68999999997654332  233556899999999987 46899999999999999999999998642


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCc--HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSS--IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                     .+....+.......  ......++.+.++|.+||..||.+|||++|+++
T Consensus       251 ~~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~  301 (504)
T 3q5i_A          251 ND---------------------QDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN  301 (504)
T ss_dssp             SH---------------------HHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CH---------------------HHHHHHHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            21                     12222222222211  111245678999999999999999999999986

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.9e-39  Score=265.96  Aligned_cols=214  Identities=21%  Similarity=0.268  Sum_probs=152.0

Q ss_pred             CCcccceeeEEEEeCC--CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            3 SHNHILKLIGCCLETP--IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~--~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +||||+++++++...+  ..++||||++ ++|.+++..      ..++...+..++.|++.||+|||   +.+|+|||||
T Consensus        67 ~h~niv~l~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~------~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlk  136 (388)
T 3oz6_A           67 GHENIVNLLNVLRADNDRDVYLVFDYME-TDLHAVIRA------NILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMK  136 (388)
T ss_dssp             TCTTBCCEEEEEECTTSSCEEEEEECCS-EEHHHHHHH------TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred             CCCCCCeeeeEEecCCCCEEEEEecccC-cCHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCC
Confidence            3999999999997544  6799999997 799999976      45888999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC--------------------cceeecccccccccCcccccc-CCcccccchhh
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE--------------------THITDTVMGTLGYCAPEYMRT-GVFNEKSNVFS  139 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~--------------------~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~s  139 (239)
                      |+|||++.++.+||+|||+++......                    ........||+.|+|||++.+ ..++.++||||
T Consensus       137 p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwS  216 (388)
T 3oz6_A          137 PSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWS  216 (388)
T ss_dssp             GGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHH
T ss_pred             HHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHH
Confidence            999999999999999999987643210                    112234578999999999986 56899999999


Q ss_pred             hhhHHHHHhcCCCCcccccccccccc-------cchhhhhhhhhccchhhhhhhhh------hcCCCcHHH---------
Q 044155          140 FSVFLFELLTGWDVSDLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIV------VEDVSSIEK---------  197 (239)
Q Consensus       140 lG~~l~~~~~g~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~---------  197 (239)
                      |||++|+|++|..||...........       +..+..... .............      ........+         
T Consensus       217 lG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (388)
T 3oz6_A          217 LGCILGEILCGKPIFPGSSTMNQLERIIGVIDFPSNEDVESI-QSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKI  295 (388)
T ss_dssp             HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHTS-CCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhc-cCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccc
Confidence            99999999999999975433211110       000000000 0000000000000      000000000         


Q ss_pred             ---HHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          198 ---EQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       198 ---~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                         ...++.+.+|+.+||+.||.+|||++|+++
T Consensus       296 ~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~  328 (388)
T 3oz6_A          296 NPKADCNEEALDLLDKLLQFNPNKRISANDALK  328 (388)
T ss_dssp             CTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             cccccCCHHHHHHHHHhhccCcccCCCHHHHhC
Confidence               023567899999999999999999999976

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=3.4e-39  Score=255.77  Aligned_cols=199  Identities=23%  Similarity=0.324  Sum_probs=150.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+.+...... ...++...+..++.|++.||.|||   +.+++|+|||
T Consensus        76 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dik  151 (285)
T 3is5_A           76 SLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQAR-GKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLK  151 (285)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEECCCSCCBHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCS
T ss_pred             hCCCchHHhHHHheecCCeEEEEEEeCCCCcHHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCC
Confidence            478999999999999999999999999999999988643110 046889999999999999999999   8999999999


Q ss_pred             Ccceee---cCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILF---NEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~---~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||++   +.++.++|+|||++.......  ......+++.|+|||++. ..++.++||||||+++|+|++|..||...
T Consensus       152 p~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~  228 (285)
T 3is5_A          152 PENILFQDTSPHSPIKIIDFGLAELFKSDE--HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGT  228 (285)
T ss_dssp             GGGEEESSSSTTCCEEECCCCCCCC------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHHEEEecCCCCCCEEEEeeecceecCCcc--cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCC
Confidence            999999   455789999999987553322  233456899999999886 56789999999999999999999998643


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhc-CCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVE-DVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                     .+........ ..........++.+.+++.+||+.||.+|||+.|+++
T Consensus       229 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          229 SL---------------------EEVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             SH---------------------HHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             CH---------------------HHHHhhhccCCcccccccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            21                     0111111000 0001111123567889999999999999999999985

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=7.1e-39  Score=272.09  Aligned_cols=200  Identities=25%  Similarity=0.355  Sum_probs=159.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++|+|.+.+...     ..+++..+..++.|++.||.|||   +.+|+|||||
T Consensus        92 ~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlk  163 (494)
T 3lij_A           92 LLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHR-----MKFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLK  163 (494)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hCCCCCCCeEEEEEEeCCEEEEEEecCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCC
Confidence            478999999999999999999999999999999988765     56889999999999999999999   8999999999


Q ss_pred             CcceeecCC---CceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEE---NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~---~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++..   +.+||+|||++.......  ......||+.|+|||++. ..++.++||||||+++|+|++|..||...
T Consensus       164 p~Nil~~~~~~~~~~kl~DfG~a~~~~~~~--~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~  240 (494)
T 3lij_A          164 PENLLLESKEKDALIKIVDFGLSAVFENQK--KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQ  240 (494)
T ss_dssp             GGGEEESCSSTTCCEEECCCTTCEECBTTB--CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hhhEEEeCCCCCCcEEEEECCCCeECCCCc--cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999764   459999999987654332  233456899999999886 56899999999999999999999998643


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH--HHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK--KLRQI  232 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~--~L~~l  232 (239)
                      ..                     .+....+......  .......++.+.++|.+||+.||.+|||+.|+++  ++.+.
T Consensus       241 ~~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~~  298 (494)
T 3lij_A          241 TD---------------------QEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIKEM  298 (494)
T ss_dssp             SH---------------------HHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHHH
T ss_pred             CH---------------------HHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHhcCcccccC
Confidence            21                     1111111111111  1111234567899999999999999999999986  45443

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=3.3e-39  Score=256.15  Aligned_cols=204  Identities=20%  Similarity=0.244  Sum_probs=148.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC-Ceeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR-PIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~-~i~H~dl   79 (239)
                      +++||||+++++++.+++..++||||++ ++|.+++...... ...+++..+..++.|++.||.|||   ++ +++|+||
T Consensus        62 ~~~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl  136 (290)
T 3fme_A           62 TVDCPFTVTFYGALFREGDVWICMELMD-TSLDKFYKQVIDK-GQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDV  136 (290)
T ss_dssp             TCCCTTBCCEEEEEECSSSEEEEEECCS-EEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCC
T ss_pred             hCCCCeEEEEeeeeeccCCEEEEEehhc-cchHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCC
Confidence            3689999999999999999999999997 6988877642110 056899999999999999999999   77 9999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccc----ccCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYM----RTGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~----~~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      ||+||+++.++.++|+|||++.......  ......|++.|+|||.+    ....++.++||||||+++|+|++|..||.
T Consensus       137 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  214 (290)
T 3fme_A          137 KPSNVLINALGQVKMCDFGISGYLVDDV--AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYD  214 (290)
T ss_dssp             SGGGCEECTTCCEEBCCC-----------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             CHHHEEECCCCCEEEeecCCcccccccc--cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCcc
Confidence            9999999999999999999987653322  12334689999999996    45568899999999999999999999986


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH--HHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK--KLRQ  231 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~--~L~~  231 (239)
                      ......                    ...................+..+.+++.+||+.||.+|||+.|+++  ++..
T Consensus       215 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~  272 (290)
T 3fme_A          215 SWGTPF--------------------QQLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTL  272 (290)
T ss_dssp             CCSCHH--------------------HHHHHHHHSCCCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHH
T ss_pred             ccCchH--------------------HHHHHHhccCCCCcccccCCHHHHHHHHHHhhcChhhCcCHHHHHhCccccc
Confidence            322100                    0011111111111111234567899999999999999999999987  4443

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1e-38  Score=252.47  Aligned_cols=202  Identities=20%  Similarity=0.290  Sum_probs=159.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        64 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~  135 (283)
T 3bhy_A           64 EIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEK-----ESLTEDEATQFLKQILDGVHYLH---SKRIAHFDLK  135 (283)
T ss_dssp             HCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hCCCCCeeehhheecCCCeEEEEEeecCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCC
Confidence            368999999999999999999999999999999999764     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCC----ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEEN----VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+||+++.++    .++|+|||.+.......  ......+++.|+|||.+.+..++.++||||||+++|+|++|..||..
T Consensus       136 p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  213 (283)
T 3bhy_A          136 PENIMLLDKNVPNPRIKLIDFGIAHKIEAGN--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG  213 (283)
T ss_dssp             GGGEEESCSSSSSCCEEECCCTTCEECC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             hHHEEEecCCCCCCceEEEecccceeccCCC--cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCC
Confidence            9999998877    79999999987653322  12344688999999999988899999999999999999999999854


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcC--CCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH--HHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED--VSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK--KLRQI  232 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~--~L~~l  232 (239)
                      ....                     +.........  .........+..+.+++.+||..||.+|||+.++++  +++++
T Consensus       214 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~  272 (283)
T 3bhy_A          214 ETKQ---------------------ETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAI  272 (283)
T ss_dssp             SSHH---------------------HHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHH
T ss_pred             cchH---------------------HHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHH
Confidence            3210                     1111111111  111122244567899999999999999999999997  55554


Q ss_pred             H
Q 044155          233 Y  233 (239)
Q Consensus       233 ~  233 (239)
                      .
T Consensus       273 ~  273 (283)
T 3bhy_A          273 R  273 (283)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=2.6e-39  Score=259.94  Aligned_cols=209  Identities=21%  Similarity=0.294  Sum_probs=158.3

Q ss_pred             CCCCcccceeeEEEEe----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            1 QMSHNHILKLIGCCLE----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +++||||+++++++..    ....++||||+++++|.+++...... ...+++..+..++.|++.||.|||   +.+++|
T Consensus        82 ~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH  157 (317)
T 2buj_A           82 LFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDK-GNFLTEDQILWLLLGICRGLEAIH---AKGYAH  157 (317)
T ss_dssp             TCCCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEEC
T ss_pred             hcCCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCccc
Confidence            4789999999999873    34678999999999999988763110 156899999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCc--------ceeecccccccccCccccccCC---cccccchhhhhhHHH
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGET--------HITDTVMGTLGYCAPEYMRTGV---FNEKSNVFSFSVFLF  145 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~---~~~~~Di~slG~~l~  145 (239)
                      +||||+||+++.++.++|+|||.+........        .......|++.|+|||.+.+..   ++.++||||||+++|
T Consensus       158 ~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~  237 (317)
T 2buj_A          158 RDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLY  237 (317)
T ss_dssp             CCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHH
T ss_pred             CCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHH
Confidence            99999999999999999999998765421110        0012345689999999987554   688999999999999


Q ss_pred             HHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 044155          146 ELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV  225 (239)
Q Consensus       146 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~el  225 (239)
                      +|++|..||........                .............    .....+..+.+++.+||+.||.+|||+.++
T Consensus       238 el~~g~~p~~~~~~~~~----------------~~~~~~~~~~~~~----~~~~~~~~l~~li~~~l~~dp~~Rps~~~l  297 (317)
T 2buj_A          238 AMMFGEGPYDMVFQKGD----------------SVALAVQNQLSIP----QSPRHSSALWQLLNSMMTVDPHQRPHIPLL  297 (317)
T ss_dssp             HHHHSSCTTHHHHHTTS----------------CHHHHHHCC--CC----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             HHHhCCCChhhhhcccc----------------hhhHHhhccCCCC----ccccCCHHHHHHHHHHhhcChhhCCCHHHH
Confidence            99999999853221100                0001111000000    012345678999999999999999999999


Q ss_pred             HHHHHHHH
Q 044155          226 AKKLRQIY  233 (239)
Q Consensus       226 l~~L~~l~  233 (239)
                      ++.|+++.
T Consensus       298 l~~L~~~~  305 (317)
T 2buj_A          298 LSQLEALQ  305 (317)
T ss_dssp             HHHHHHTC
T ss_pred             HHHhhhcC
Confidence            99998764

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=3.2e-39  Score=273.67  Aligned_cols=195  Identities=23%  Similarity=0.346  Sum_probs=159.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+.+++|.+.+...     ..+++..+..++.|++.||.|||   +++++|||||
T Consensus        82 ~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlk  153 (484)
T 3nyv_A           82 QLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISR-----KRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLK  153 (484)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC-----SCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCCCCcEEEEEEeCCEEEEEEecCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCC
Confidence            479999999999999999999999999999999999865     56899999999999999999999   8999999999


Q ss_pred             Ccceee---cCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILF---NEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~---~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||++   +.++.+||+|||++.......  ......||+.|+|||++.+ .++.++||||||+++|+|++|..||...
T Consensus       154 p~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~  230 (484)
T 3nyv_A          154 PENLLLESKSKDANIRIIDFGLSTHFEASK--KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGA  230 (484)
T ss_dssp             GGGEEESSSSTTCCEEECCTTHHHHBCCCC--SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHHEEEecCCCCCcEEEEeeeeeEEccccc--ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCC
Confidence            999999   567789999999987664432  2234568999999999875 6899999999999999999999998643


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                     .+....+......  .+.....++.+.++|.+||+.||.+|||+.|+++
T Consensus       231 ~~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~  281 (484)
T 3nyv_A          231 NE---------------------YDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALD  281 (484)
T ss_dssp             SH---------------------HHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CH---------------------HHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence            21                     1111111111111  1111245677899999999999999999999986

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=9.1e-39  Score=272.39  Aligned_cols=202  Identities=18%  Similarity=0.280  Sum_probs=160.6

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+....++||||++||+|.+++...... ...+++..+..++.||+.||.|||   +++|+||||||
T Consensus       242 l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg~L~~~l~~~~~~-~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP  317 (543)
T 3c4z_A          242 VHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDED-NPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKP  317 (543)
T ss_dssp             CCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTSSTT-SCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCG
T ss_pred             cCCCCEeeEEEEEeeCCEEEEEEEeccCCCHHHHHHHhhcc-cccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCCh
Confidence            68999999999999999999999999999999998764321 146899999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.+||+|||++........ ......||+.|+|||++.+..++.++|+||||+++|+|++|..||.......
T Consensus       318 ~NILl~~~g~vkL~DFGla~~~~~~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~  396 (543)
T 3c4z_A          318 ENVLLDDDGNVRISDLGLAVELKAGQT-KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV  396 (543)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTCC-CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC
T ss_pred             HHEEEeCCCCEEEeecceeeeccCCCc-ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch
Confidence            999999999999999999976543321 2334579999999999999899999999999999999999999986432110


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH-----HHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM-----VDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~-----~ell~  227 (239)
                                       ...+....+.......  +...+..+.++|.+||+.||.+||++     +++++
T Consensus       397 -----------------~~~~~~~~i~~~~~~~--p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~  448 (543)
T 3c4z_A          397 -----------------ENKELKQRVLEQAVTY--PDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT  448 (543)
T ss_dssp             -----------------CHHHHHHHHHHCCCCC--CTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred             -----------------hHHHHHHHHhhcccCC--CcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence                             0111111222211111  12456778999999999999999964     66653

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=7.2e-39  Score=254.86  Aligned_cols=195  Identities=19%  Similarity=0.278  Sum_probs=159.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        71 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~  142 (294)
T 2rku_A           71 SLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR-----KALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLK  142 (294)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred             hCCCCCEeeeeeeeccCCEEEEEEecCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence            478999999999999999999999999999999988765     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||.+....... .......+++.|+|||.+.+..++.++||||||+++|+|++|..||......
T Consensus       143 p~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~  221 (294)
T 2rku_A          143 LGNLFLNEDLEVKIGDFGLATKVEYDG-ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK  221 (294)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSTT-CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             hHhEEEcCCCCEEEEeccCceecccCc-cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            999999999999999999987653222 1233456899999999999888999999999999999999999998643211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           +...........  .+...+..+.+++.+||+.||.+|||++|+++
T Consensus       222 ---------------------~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~  265 (294)
T 2rku_A          222 ---------------------ETYLRIKKNEYS--IPKHINPVAASLIQKMLQTDPTARPTINELLN  265 (294)
T ss_dssp             ---------------------HHHHHHHTTCCC--CCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             ---------------------HHHHHHhhccCC--CccccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence                                 001111111110  01133466889999999999999999999987

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=8.3e-39  Score=271.21  Aligned_cols=195  Identities=22%  Similarity=0.323  Sum_probs=156.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+.+++|.+.+...     ..++...+..++.|++.||.|||   +.+|+|||||
T Consensus        77 ~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlk  148 (486)
T 3mwu_A           77 KLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR-----KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLK  148 (486)
T ss_dssp             HCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             hCCCCCcCeEEEEEEcCCEEEEEEEcCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCc
Confidence            378999999999999999999999999999999988765     56899999999999999999999   8999999999


Q ss_pred             Ccceeec---CCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFN---EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~---~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++   .++.+||+|||++.......  ......||+.|+|||++.+ .++.++||||||+++|+|++|..||...
T Consensus       149 p~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~  225 (486)
T 3mwu_A          149 PENILLESKEKDCDIKIIDFGLSTCFQQNT--KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK  225 (486)
T ss_dssp             GGGEEESSSSTTCCEEECSCSCTTTBCCC------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hHHEEEecCCCCCCEEEEECCcCeECCCCC--ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            9999995   45579999999987654332  2334568999999999875 5899999999999999999999998543


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                     .+....+.....  ..+.....++.+.++|.+||..||.+|||+.++++
T Consensus       226 ~~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~  276 (486)
T 3mwu_A          226 NE---------------------YDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (486)
T ss_dssp             SH---------------------HHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CH---------------------HHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            21                     111111111111  11111244677899999999999999999999987

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=6.4e-39  Score=256.37  Aligned_cols=195  Identities=24%  Similarity=0.345  Sum_probs=157.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        62 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dik  133 (304)
T 2jam_A           62 KIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILER-----GVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLK  133 (304)
T ss_dssp             HCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCC
T ss_pred             hCCCCCeeehhhhcccCCEEEEEEEcCCCccHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence            368999999999999999999999999999999998765     56889999999999999999999   8999999999


Q ss_pred             Ccceee---cCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILF---NEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~---~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||++   +.++.++|+|||++......   ......|++.|+|||.+.+..++.++||||||+++|+|++|..||...
T Consensus       134 p~NIl~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  210 (304)
T 2jam_A          134 PENLLYLTPEENSKIMITDFGLSKMEQNG---IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE  210 (304)
T ss_dssp             GGGCEESSSSTTCCEEBCSCSTTCCCCCB---TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             HHHEEEecCCCCCCEEEccCCcceecCCC---ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            999999   77889999999998654322   123456899999999999888999999999999999999999998542


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                     .+..........  ........+..+.+++.+||+.||.+|||+.|+++
T Consensus       211 ~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          211 TE---------------------SKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALS  261 (304)
T ss_dssp             CH---------------------HHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             CH---------------------HHHHHHHHcCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            21                     011111111110  11111234567899999999999999999999986

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=5.3e-39  Score=256.66  Aligned_cols=194  Identities=20%  Similarity=0.322  Sum_probs=157.8

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+....++||||+++++|.+++..      ..++...+..++.|++.||.|||   +.+++|+||||
T Consensus        77 l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p  147 (303)
T 3a7i_A           77 CDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEP------GPLDETQIATILREILKGLDYLH---SEKKIHRDIKA  147 (303)
T ss_dssp             CCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHTT------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred             CCCCCEeEEEEEEecCCeEEEEEEeCCCCcHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCh
Confidence            6899999999999999999999999999999999864      46889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +||+++.++.++|+|||++....... .......+++.|+|||.+.+..++.++||||||+++|+|++|..||.......
T Consensus       148 ~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~  226 (303)
T 3a7i_A          148 ANVLLSEHGEVKLADFGVAGQLTDTQ-IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMK  226 (303)
T ss_dssp             GGEEECTTSCEEECCCTTCEECBTTB-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred             heEEECCCCCEEEeecccceecCccc-cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHH
Confidence            99999999999999999987654322 12334568999999999998889999999999999999999999885432110


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           .......... .......+..+.+++.+||+.||.+|||+.++++
T Consensus       227 ---------------------~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  270 (303)
T 3a7i_A          227 ---------------------VLFLIPKNNP-PTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLK  270 (303)
T ss_dssp             ---------------------HHHHHHHSCC-CCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             ---------------------HHHHhhcCCC-CCCccccCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence                                 0000000000 0001133466889999999999999999999987

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=5.5e-39  Score=260.18  Aligned_cols=195  Identities=19%  Similarity=0.280  Sum_probs=159.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        97 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlk  168 (335)
T 2owb_A           97 SLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR-----KALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLK  168 (335)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred             hCCCCCCCeEEEEEecCCeEEEEEecCCCCCHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCC
Confidence            478999999999999999999999999999999998765     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|+|||++....... .......|++.|+|||++.+..++.++||||||+++|+|++|..||......
T Consensus       169 p~NIl~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  247 (335)
T 2owb_A          169 LGNLFLNEDLEVKIGDFGLATKVEYDG-ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK  247 (335)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSTT-CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             chhEEEcCCCCEEEeeccCceecccCc-ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHH
Confidence            999999999999999999987653222 1233456899999999999888999999999999999999999998643210


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           +............  +...+..+.++|.+||+.||.+|||++|+++
T Consensus       248 ---------------------~~~~~~~~~~~~~--~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  291 (335)
T 2owb_A          248 ---------------------ETYLRIKKNEYSI--PKHINPVAASLIQKMLQTDPTARPTINELLN  291 (335)
T ss_dssp             ---------------------HHHHHHHHTCCCC--CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             ---------------------HHHHHHhcCCCCC--CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                                 0011111111100  1133456889999999999999999999986

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-39  Score=263.21  Aligned_cols=193  Identities=19%  Similarity=0.270  Sum_probs=146.0

Q ss_pred             cccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcce
Q 044155            5 NHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCI   84 (239)
Q Consensus         5 ~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~ni   84 (239)
                      |||+++++++.+....++|||+ .+++|.+++...     ..++...+..++.|++.||.|||   +.+|+||||||+||
T Consensus        69 ~~iv~~~~~~~~~~~~~lv~e~-~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NI  139 (343)
T 3dbq_A           69 DKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKK-----KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANF  139 (343)
T ss_dssp             TTBCCEEEEEECSSEEEEEECC-CSEEHHHHHHHS-----CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGE
T ss_pred             CceEEEeeeEeeCCEEEEEEeC-CCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceE
Confidence            9999999999999999999995 568999999875     56889999999999999999999   89999999999999


Q ss_pred             eecCCCceeEcccccccccCCCCcc-eeecccccccccCcccccc-----------CCcccccchhhhhhHHHHHhcCCC
Q 044155           85 LFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRT-----------GVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        85 l~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~-----------~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      |++ ++.+||+|||++......... ......||+.|+|||++.+           ..++.++||||||+++|+|++|..
T Consensus       140 ll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~  218 (343)
T 3dbq_A          140 LIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKT  218 (343)
T ss_dssp             EEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSC
T ss_pred             EEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCC
Confidence            997 578999999998765433221 2335568999999999865           568889999999999999999999


Q ss_pred             CcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ||.......                    ...............+...+..+.+++..||+.||.+|||+.|+++
T Consensus       219 pf~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~  273 (343)
T 3dbq_A          219 PFQQIINQI--------------------SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  273 (343)
T ss_dssp             TTTTCCSHH--------------------HHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cchhhhhHH--------------------HHHHHHhcCCcccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHh
Confidence            985422110                    0000111100000001122356889999999999999999999986

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.2e-39  Score=263.57  Aligned_cols=215  Identities=20%  Similarity=0.210  Sum_probs=157.2

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++.+....++||||++ ++|.+++....    ..++...+..++.|++.||.|||   +.+++|+||||
T Consensus        69 l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp  140 (346)
T 1ua2_A           69 LSHPNIIGLLDAFGHKSNISLVFDFME-TDLEVIIKDNS----LVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKP  140 (346)
T ss_dssp             CCCTTBCCEEEEECCTTCCEEEEECCS-EEHHHHHTTCC----SSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCG
T ss_pred             CCCCCCCeEEEEEeeCCceEEEEEcCC-CCHHHHHHhcC----cCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCH
Confidence            689999999999999999999999998 59988887643    46788899999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      +||+++.++.+||+|||++....... .......+|+.|+|||++.+. .++.++||||||+++|+|++|..||......
T Consensus       141 ~Nil~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~  219 (346)
T 1ua2_A          141 NNLLLDENGVLKLADFGLAKSFGSPN-RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL  219 (346)
T ss_dssp             GGEEECTTCCEEECCCGGGSTTTSCC-CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             HHEEEcCCCCEEEEecccceeccCCc-ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHH
Confidence            99999999999999999987653222 123345689999999998764 4889999999999999999999988654322


Q ss_pred             ccccccchhhhhhhhhccchhhhhh---hhhhcCCC--c--HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVD---HIVVEDVS--S--IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......+... . ......+.....   ........  +  ......+..+.++|.+||..||.+|||+.|+++
T Consensus       220 ~~~~~i~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  291 (346)
T 1ua2_A          220 DQLTRIFETL-G-TPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  291 (346)
T ss_dssp             HHHHHHHHHH-C-CCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHc-C-CCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence            1111000000 0 000000100000   00000000  0  001234577899999999999999999999986

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=1.7e-38  Score=260.77  Aligned_cols=212  Identities=17%  Similarity=0.233  Sum_probs=149.8

Q ss_pred             CCCcccceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            2 MSHNHILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      ++||||+++++++....      ..++||||++ ++|.+.+.       ..++...+..++.|++.||.|||   +.+++
T Consensus        81 l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~i~~qi~~al~~lH---~~~iv  149 (371)
T 2xrw_A           81 VNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD-ANLCQVIQ-------MELDHERMSYLLYQMLCGIKHLH---SAGII  149 (371)
T ss_dssp             CCCTTBCCEEEEECSCCSTTTCCEEEEEEECCS-EEHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHH---HTTCC
T ss_pred             cCCCCccceEEeeccccccccccceEEEEEcCC-CCHHHHHh-------hccCHHHHHHHHHHHHHHHHHHH---HCCee
Confidence            68999999999997654      5799999997 68988885       34788999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |+||||+||+++.++.+||+|||++.......  ......||+.|+|||++.+..++.++||||||+++|+|++|..||.
T Consensus       150 H~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~  227 (371)
T 2xrw_A          150 HRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFP  227 (371)
T ss_dssp             CSCCCGGGEEECTTSCEEECCCCC------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             cccCCHHHEEEcCCCCEEEEEeeccccccccc--ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999987653221  2334568999999999999889999999999999999999999997


Q ss_pred             cccccccc-------cccchhhhhhh-------h------hccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCC
Q 044155          156 LVKDVHDL-------VCPFSEYLKNC-------F------EDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDS  215 (239)
Q Consensus       156 ~~~~~~~~-------~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~d  215 (239)
                      ........       ..+..++....       .      ....+........ .+.........+..+.+|+.+||..|
T Consensus       228 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~mL~~d  306 (371)
T 2xrw_A          228 GTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVL-FPADSEHNKLKASQARDLLSKMLVID  306 (371)
T ss_dssp             CSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGG-SCCSSHHHHHHHHHHHHHHHHHSCSS
T ss_pred             CCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhccccc-CcccccccccccHHHHHHHHHHCcCC
Confidence            54331110       01111110000       0      0000000110000 11112223355778999999999999


Q ss_pred             CCCCCCHHHHHH
Q 044155          216 PADRPSMVDVAK  227 (239)
Q Consensus       216 p~~Rps~~ell~  227 (239)
                      |.+|||++|+++
T Consensus       307 P~~R~t~~e~l~  318 (371)
T 2xrw_A          307 ASKRISVDEALQ  318 (371)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             hhhCCCHHHHhC
Confidence            999999999987

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=3.7e-38  Score=263.49  Aligned_cols=146  Identities=19%  Similarity=0.256  Sum_probs=122.4

Q ss_pred             CCCCcccceeeEEEEeC-----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~-----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++...     ...++||||++ ++|.+++...     ..++...++.++.||+.||.|||   +.+|+
T Consensus        81 ~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~-----~~l~~~~~~~i~~qil~aL~~LH---~~giv  151 (432)
T 3n9x_A           81 RLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD-SDLKKLFKTP-----IFLTEEHIKTILYNLLLGENFIH---ESGII  151 (432)
T ss_dssp             HCCCTTBCCEEEECCCSCTTTCCCEEEEEECCS-EEHHHHHHSS-----CCCCHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred             HcCCCCcceEEEEEecCCCCcCCeEEEEEecCC-cCHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCC
Confidence            36899999999999866     56899999997 7999999865     56899999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCc---------------------ceeecccccccccCcccc-ccCCccc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGET---------------------HITDTVMGTLGYCAPEYM-RTGVFNE  133 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~---------------------~~~~~~~~~~~y~aPE~~-~~~~~~~  133 (239)
                      ||||||+|||++.++.+||+|||+++.......                     .......||+.|+|||++ ....++.
T Consensus       152 HrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~  231 (432)
T 3n9x_A          152 HRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTK  231 (432)
T ss_dssp             CCCCCGGGEEECTTCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCT
T ss_pred             CCCCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCc
Confidence            999999999999999999999999976533211                     112456789999999986 4566999


Q ss_pred             ccchhhhhhHHHHHhcCCCCcc
Q 044155          134 KSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus       134 ~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      ++|||||||++|||++|..|+.
T Consensus       232 ~~DiwSlG~il~ell~g~~p~~  253 (432)
T 3n9x_A          232 SIDIWSTGCIFAELLNMLQSHI  253 (432)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTTC
T ss_pred             ccccchHHHHHHHHHhcccccc
Confidence            9999999999999999766654

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=1.1e-38  Score=257.64  Aligned_cols=196  Identities=20%  Similarity=0.238  Sum_probs=154.7

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+....++||||+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+||||+
T Consensus        87 ~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~  160 (327)
T 3lm5_A           87 SCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELA---EMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQ  160 (327)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGG
T ss_pred             CCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChH
Confidence            579999999999999999999999999999999865433   56899999999999999999999   899999999999


Q ss_pred             ceeecC---CCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           83 CILFNE---ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        83 nil~~~---~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||+++.   ++.+||+|||++.......  ......|++.|+|||++.+..++.++||||||+++|+|++|..||.....
T Consensus       161 NIl~~~~~~~~~~kL~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  238 (327)
T 3lm5_A          161 NILLSSIYPLGDIKIVDFGMSRKIGHAC--ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDN  238 (327)
T ss_dssp             GEEESCBTTBCCEEECCGGGCEEC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             HEEEecCCCCCcEEEeeCccccccCCcc--ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence            999998   7899999999987653322  12345689999999999988999999999999999999999999854321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhh--cCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVV--EDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                     +.......  ...........+..+.++|.+||+.||.+|||++++++
T Consensus       239 ~---------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          239 Q---------------------ETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             H---------------------HHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             h---------------------HHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence            1                     00000000  01111111244567889999999999999999999975

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=3.6e-38  Score=256.87  Aligned_cols=216  Identities=17%  Similarity=0.235  Sum_probs=155.2

Q ss_pred             CCCcccceeeEEEEeC--------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC
Q 044155            2 MSHNHILKLIGCCLET--------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP   73 (239)
Q Consensus         2 l~H~niv~l~~~~~~~--------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~   73 (239)
                      ++||||+++++++...        +..++||||++ ++|.+.+....    ..++...+..++.|++.||.|||   +.+
T Consensus        73 l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~LH---~~~  144 (351)
T 3mi9_A           73 LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCE-HDLAGLLSNVL----VKFTLSEIKRVMQMLLNGLYYIH---RNK  144 (351)
T ss_dssp             CCCTTBCCEEEEEEEC--------CEEEEEEECCS-EEHHHHHHCTT----SCCCHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred             ccCCCcccHhheeeccccccccCCceEEEEEeccC-CCHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            6899999999999873        45789999998 68888887653    46899999999999999999999   899


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCC---cceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhc
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE---THITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~  149 (239)
                      ++|+||||+||+++.++.+||+|||++.......   ........||+.|+|||++.+ ..++.++||||||+++|+|++
T Consensus       145 ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~  224 (351)
T 3mi9_A          145 ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWT  224 (351)
T ss_dssp             EECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHH
T ss_pred             eeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999987653221   112234568999999999876 458999999999999999999


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhh-----hhhh--hhcCCCcHHH----HHHHHHHHHHHhhhcCCCCCC
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEI-----VDHI--VVEDVSSIEK----EQQLHASAQVTFECIKDSPAD  218 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~----~~~~~~~~~li~~cl~~dp~~  218 (239)
                      |..||............. .. ........+...     ....  ..........    ...++.+.++|.+||+.||.+
T Consensus       225 g~~pf~~~~~~~~~~~i~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  302 (351)
T 3mi9_A          225 RSPIMQGNTEQHQLALIS-QL-CGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQ  302 (351)
T ss_dssp             SSCSCCCSSHHHHHHHHH-HH-HCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGG
T ss_pred             CCCCCCCCChHHHHHHHH-HH-hCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhh
Confidence            999987543211110000 00 000000000000     0000  0000001100    112466889999999999999


Q ss_pred             CCCHHHHHH
Q 044155          219 RPSMVDVAK  227 (239)
Q Consensus       219 Rps~~ell~  227 (239)
                      |||++|+++
T Consensus       303 R~t~~e~l~  311 (351)
T 3mi9_A          303 RIDSDDALN  311 (351)
T ss_dssp             SCCHHHHHT
T ss_pred             CCCHHHHhC
Confidence            999999986

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=5.6e-38  Score=257.05  Aligned_cols=194  Identities=24%  Similarity=0.370  Sum_probs=157.3

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++......++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+||||+
T Consensus       158 ~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-----~~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~  229 (365)
T 2y7j_A          158 GHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEK-----VALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPE  229 (365)
T ss_dssp             TCTTBCCEEEEEEBSSEEEEEECCCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGG
T ss_pred             CCCCEeEEEEEEeeCCEEEEEEEeCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHH
Confidence            7999999999999999999999999999999999764     56899999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc------CCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT------GVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      ||+++.++.++|+|||++.......  ......||+.|+|||++.+      ..++.++||||||+++|+|++|..||..
T Consensus       230 NIl~~~~~~ikl~DfG~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~  307 (365)
T 2y7j_A          230 NILLDDNMQIRLSDFGFSCHLEPGE--KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWH  307 (365)
T ss_dssp             GEEECTTCCEEECCCTTCEECCTTC--CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             HEEECCCCCEEEEecCcccccCCCc--ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCC
Confidence            9999999999999999987654332  2334568999999998863      3578899999999999999999999854


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCc--HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSS--IEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                     ......+.......  ......+..+.+++.+||+.||.+|||+.++++
T Consensus       308 ~~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          308 RRQ---------------------ILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             SSH---------------------HHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCH---------------------HHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            221                     01111111111111  111234567899999999999999999999986

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=4.4e-39  Score=256.81  Aligned_cols=211  Identities=20%  Similarity=0.305  Sum_probs=154.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcC---CCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeec
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGA---PQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFR   77 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~   77 (239)
                      +++||||+++++++...+..++||||+++++|.+++...   .......++...+..++.|++.||.|||   +.+++|+
T Consensus        69 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~  145 (303)
T 2vwi_A           69 QCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHR  145 (303)
T ss_dssp             CCCCTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCC
T ss_pred             hcCCCCEeeEEEEEeecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCC
Confidence            478999999999999999999999999999999998741   0001156899999999999999999999   8999999


Q ss_pred             cccCcceeecCCCceeEcccccccccCCCC----cceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCC
Q 044155           78 NFKTSCILFNEENVAKLFDFSLSISIPEGE----THITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        78 dlk~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      ||||+||+++.++.++|+|||++.......    ........|++.|+|||.+.+ ..++.++||||||+++|+|++|..
T Consensus       146 dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~  225 (303)
T 2vwi_A          146 DVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAA  225 (303)
T ss_dssp             CCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             CCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCC
Confidence            999999999999999999999986553321    112234568999999999876 568899999999999999999999


Q ss_pred             CcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ||.........        ........ ............    ....+..+.+++.+||+.||.+|||+.++++
T Consensus       226 pf~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          226 PYHKYPPMKVL--------MLTLQNDP-PSLETGVQDKEM----LKKYGKSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             TTTTSCGGGHH--------HHHHTSSC-CCTTC-----CC----CCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CCccCchhhHH--------HHHhccCC-Cccccccccchh----hhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence            98654321110        00000000 000000000000    0123456889999999999999999999986

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=1.5e-38  Score=258.63  Aligned_cols=211  Identities=16%  Similarity=0.219  Sum_probs=158.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhh------hhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CC
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDR------ILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RP   73 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~------l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~   73 (239)
                      +++||||+++++++.+.+..++||||+++++|.++      +.....   ..++...+..++.|++.||.|||   + .+
T Consensus        99 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~~  172 (348)
T 2pml_X           99 DIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYT---CFIPIQVIKCIIKSVLNSFSYIH---NEKN  172 (348)
T ss_dssp             TCCCTTBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSC---CCCCHHHHHHHHHHHHHHHHHHH---HTSC
T ss_pred             hCCCCCcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccc---cCCCHHHHHHHHHHHHHHHHHHh---ccCC
Confidence            47899999999999999999999999999999998      554222   67899999999999999999999   7 99


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-Cccc-ccchhhhhhHHHHHhcCC
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNE-KSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~-~~Di~slG~~l~~~~~g~  151 (239)
                      ++|+||||+||+++.++.++|+|||.+......   ......+++.|+|||.+.+. .++. ++||||||+++|+|++|.
T Consensus       173 i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~  249 (348)
T 2pml_X          173 ICHRDVKPSNILMDKNGRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNV  249 (348)
T ss_dssp             EECCCCCGGGEEECTTSCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSS
T ss_pred             EeecCCChHhEEEcCCCcEEEeccccccccccc---cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCC
Confidence            999999999999999999999999998765332   23455689999999999877 5666 999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhc-cchhhhhh---hhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFED-NRFTEIVD---HIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .||..........       ...... ...+....   ...............+..+.+++.+||+.||.+|||+.|+++
T Consensus       250 ~pf~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          250 VPFSLKISLVELF-------NNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             CSSCCSSCSHHHH-------HHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CCCCCCCcHHHHH-------HHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            9987543211100       000000 00000000   000000000111245677899999999999999999999986

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=2.4e-38  Score=254.97  Aligned_cols=196  Identities=21%  Similarity=0.304  Sum_probs=154.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++..+. .++||||+++++|.+++...     ..++...+..++.|++.||.|||   +++++|+|||
T Consensus        71 ~l~h~~i~~~~~~~~~~~-~~lv~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlk  141 (322)
T 2ycf_A           71 KLNHPCIIKIKNFFDAED-YYIVLELMEGGELFDKVVGN-----KRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLK  141 (322)
T ss_dssp             HCCCTTBCCEEEEEESSS-EEEEEECCTTEETHHHHSTT-----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCCceEeeEEcCCc-eEEEEecCCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence            368999999999987655 89999999999999998765     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCc---eeEcccccccccCCCCcceeecccccccccCccccc---cCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           81 TSCILFNEENV---AKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR---TGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        81 ~~nil~~~~~~---~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+||+++.++.   +||+|||++.......  ......|++.|+|||++.   ...++.++||||||+++|+|++|..||
T Consensus       142 p~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf  219 (322)
T 2ycf_A          142 PENVLLSSQEEDCLIKITDFGHSKILGETS--LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPF  219 (322)
T ss_dssp             GGGEEESSSSSSCCEEECCCTTCEECCCCH--HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             HHHEEEecCCCCCeEEEccCccceeccccc--ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            99999987664   9999999987653321  223456899999999874   456889999999999999999999998


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .........                 ...   ......  .+......+..+.+++.+||+.||.+|||+.++++
T Consensus       220 ~~~~~~~~~-----------------~~~---~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          220 SEHRTQVSL-----------------KDQ---ITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             CSTTCSSCH-----------------HHH---HHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cccchHHHH-----------------HHH---HHhCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            643321111                 000   001111  11111234677899999999999999999999985

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=2.1e-38  Score=249.86  Aligned_cols=194  Identities=24%  Similarity=0.331  Sum_probs=149.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        67 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~  138 (276)
T 2h6d_A           67 LFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKH-----GRVEEMEARRLFQQILSAVDYCH---RHMVVHRDLK  138 (276)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCC
T ss_pred             cCCCCCEeEEEEEEecCCeEEEEEeccCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCC
Confidence            478999999999999999999999999999999999765     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++.......  ......+++.|+|||.+.+..+ +.++||||||+++|+|++|..||.....
T Consensus       139 p~Nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~  216 (276)
T 2h6d_A          139 PENVLLDAHMNAKIADFGLSNMMSDGE--FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV  216 (276)
T ss_dssp             GGGEEECTTSCEEECCCCGGGCCCC---------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             hhhEEECCCCCEEEeecccccccCCCc--ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH
Confidence            999999999999999999987653322  1234568899999999987665 6899999999999999999999853210


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           ..............  +...+..+.+++.+||+.||.+|||++++++
T Consensus       217 ---------------------~~~~~~~~~~~~~~--~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~  261 (276)
T 2h6d_A          217 ---------------------PTLFKKIRGGVFYI--PEYLNRSVATLLMHMLQVDPLKRATIKDIRE  261 (276)
T ss_dssp             ---------------------HHHHHHHHHCCCCC--CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---------------------HHHHHHhhcCcccC--chhcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence                                 11111111111100  1123466889999999999999999999987

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=4.8e-38  Score=262.49  Aligned_cols=146  Identities=21%  Similarity=0.248  Sum_probs=129.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .+|+||+++++++......++|||++. ++|.+++.....   ..+++..+..++.|++.||+|||   +.+|+||||||
T Consensus       156 ~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp  228 (429)
T 3kvw_A          156 DNTMNVIHMLENFTFRNHICMTFELLS-MNLYELIKKNKF---QGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKP  228 (429)
T ss_dssp             TSCSCBCCEEEEEEETTEEEEEECCCC-CBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSG
T ss_pred             cCCcCEEEEEeecccCCeEEEEEeccC-CCHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCH
Confidence            478999999999999999999999996 799999987643   45899999999999999999999   89999999999


Q ss_pred             cceeecCCCc--eeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           82 SCILFNEENV--AKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        82 ~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      +|||++.++.  +||+|||++......    .....+|+.|+|||++.+..++.++|||||||++|+|++|..||....
T Consensus       229 ~NILl~~~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~  303 (429)
T 3kvw_A          229 ENILLKQQGRSGIKVIDFGSSCYEHQR----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGED  303 (429)
T ss_dssp             GGEEESSTTSCCEEECCCTTCEETTCC----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             HHeEEccCCCcceEEeecccceecCCc----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCC
Confidence            9999999987  999999998654322    234568999999999999999999999999999999999999987543

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=3.7e-38  Score=265.39  Aligned_cols=141  Identities=21%  Similarity=0.305  Sum_probs=117.6

Q ss_pred             CCCcccceeeEEEEeC-----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            2 MSHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         2 l~H~niv~l~~~~~~~-----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      ++||||+++++++...     ...++|||++. ++|.+++...     ..+++..++.++.||+.||.|||   +.+|+|
T Consensus       109 l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~-----~~l~~~~~~~~~~qi~~aL~~LH---~~~iiH  179 (458)
T 3rp9_A          109 LNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD-SDFKKLFRTP-----VYLTELHIKTLLYNLLVGVKYVH---SAGILH  179 (458)
T ss_dssp             CCCTTBCCEEEECCCSCTTTCCCEEEEECCCS-EEHHHHHHSS-----CCCCHHHHHHHHHHHHHHHHHHH---HTTCBC
T ss_pred             CCCCCCCceEEEEecCCcccCceEEEEEeccc-cchhhhcccC-----CCCCHHHHHHHHHHHHHHHHHHH---hCCcCC
Confidence            6899999999999543     46799999985 8999999765     56899999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCc--------------------------ceeecccccccccCccccc-cC
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGET--------------------------HITDTVMGTLGYCAPEYMR-TG  129 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~--------------------------~~~~~~~~~~~y~aPE~~~-~~  129 (239)
                      |||||+|||++.++.+||+|||+++.......                          .......||+.|+|||++. ..
T Consensus       180 rDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~  259 (458)
T 3rp9_A          180 RDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQE  259 (458)
T ss_dssp             CCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCC
T ss_pred             CCCChhhEEECCCCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCC
Confidence            99999999999999999999999976532110                          1123456799999999864 56


Q ss_pred             CcccccchhhhhhHHHHHhcCC
Q 044155          130 VFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus       130 ~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      .++.++|||||||++|||++|.
T Consensus       260 ~~~~~~DiwSlG~il~elltg~  281 (458)
T 3rp9_A          260 NYTEAIDVWSIGCIFAELLNMI  281 (458)
T ss_dssp             CCCTHHHHHHHHHHHHHHHTTS
T ss_pred             CCCcHhHHHHHHHHHHHHHHhc
Confidence            6999999999999999999953

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=6e-39  Score=256.11  Aligned_cols=197  Identities=19%  Similarity=0.268  Sum_probs=152.4

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++||||+++++++...+..++||||+++++|.+++....    ..++...+..++.|++.||.|||   +.+++|+||||
T Consensus        73 l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp  145 (302)
T 2j7t_A           73 CDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELD----RGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKA  145 (302)
T ss_dssp             CCCTTBCCEEEEEECC-CEEEEEECCTTEEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSG
T ss_pred             CCCCCEeeeeeeeeeCCeEEEEEEeCCCCcHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCH
Confidence            689999999999999999999999999999999887632    56889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc-----cCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      +||+++.++.++|+|||++...... ........|++.|+|||.+.     ...++.++||||||+++|+|++|..||..
T Consensus       146 ~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  224 (302)
T 2j7t_A          146 GNVLMTLEGDIRLADFGVSAKNLKT-LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHE  224 (302)
T ss_dssp             GGEEECTTSCEEECCCHHHHHHHHH-HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             HHEEECCCCCEEEEECCCCcccccc-ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCcc
Confidence            9999999999999999986532111 11123456889999999883     56688999999999999999999999864


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCC-CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                     ........... ....+...+..+.+++.+||+.||.+|||+.++++
T Consensus       225 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          225 LNPM---------------------RVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             SCHH---------------------HHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             CCHH---------------------HHHHHHhccCCcccCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            3211                     00001111100 00111234567899999999999999999999975

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=258.00  Aligned_cols=204  Identities=19%  Similarity=0.221  Sum_probs=142.3

Q ss_pred             CCcccceeeEEEEe--------CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC-
Q 044155            3 SHNHILKLIGCCLE--------TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP-   73 (239)
Q Consensus         3 ~H~niv~l~~~~~~--------~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~-   73 (239)
                      +||||+++++++..        ....++||||+. |+|.+++......  ..+++..+..++.|++.||.|||   ..+ 
T Consensus        84 ~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~~  157 (337)
T 3ll6_A           84 GHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK-GQLVEFLKKMESR--GPLSCDTVLKIFYQTCRAVQHMH---RQKP  157 (337)
T ss_dssp             TSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS-EEHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHHHHHH---TSSS
T ss_pred             cCCChhhccccccccccccccCCceEEEEEEecC-CCHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCC
Confidence            49999999999953        234689999996 8999988752211  46899999999999999999999   888 


Q ss_pred             -eeeccccCcceeecCCCceeEcccccccccCCCCcc-----------eeecccccccccCcccc---ccCCcccccchh
Q 044155           74 -IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH-----------ITDTVMGTLGYCAPEYM---RTGVFNEKSNVF  138 (239)
Q Consensus        74 -i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----------~~~~~~~~~~y~aPE~~---~~~~~~~~~Di~  138 (239)
                       ++|+||||+||+++.++.+||+|||++.........           ......+++.|+|||++   .+..++.++|||
T Consensus       158 ~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~  237 (337)
T 3ll6_A          158 PIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIW  237 (337)
T ss_dssp             CCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHH
T ss_pred             CEEEccCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHH
Confidence             999999999999999999999999998765432211           11244588999999998   456688999999


Q ss_pred             hhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCC
Q 044155          139 SFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPAD  218 (239)
Q Consensus       139 slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~  218 (239)
                      |||+++|+|++|..||.........                     ......    ......+..+.+++.+||+.||.+
T Consensus       238 slG~il~el~~g~~p~~~~~~~~~~---------------------~~~~~~----~~~~~~~~~~~~li~~~l~~~p~~  292 (337)
T 3ll6_A          238 ALGCILYLLCFRQHPFEDGAKLRIV---------------------NGKYSI----PPHDTQYTVFHSLIRAMLQVNPEE  292 (337)
T ss_dssp             HHHHHHHHHHHSSCCC---------------------------------CCC----CTTCCSSGGGHHHHHHHSCSSGGG
T ss_pred             HHHHHHHHHHhCCCCCcchhHHHhh---------------------cCcccC----CcccccchHHHHHHHHHccCChhh
Confidence            9999999999999998543211100                     000000    000122234778999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhc
Q 044155          219 RPSMVDVAKKLRQIYRSLS  237 (239)
Q Consensus       219 Rps~~ell~~L~~l~~~~~  237 (239)
                      |||+.|+++.|.++.....
T Consensus       293 Rps~~e~l~~l~~~~~~~~  311 (337)
T 3ll6_A          293 RLSIAEVVHQLQEIAAARN  311 (337)
T ss_dssp             SCCHHHHHHHHHHHHHHTT
T ss_pred             CcCHHHHHHHHHHHHhccC
Confidence            9999999999999877543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=2.6e-38  Score=276.95  Aligned_cols=193  Identities=21%  Similarity=0.303  Sum_probs=160.1

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+....++||||+++|+|.+++...     ..+++..++.++.||+.||.|||   +.+|+||||||+
T Consensus       400 ~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~  471 (674)
T 3pfq_A          400 KPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV-----GRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLD  471 (674)
T ss_dssp             CCTTBCCEEEECBCSSEEEEEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCST
T ss_pred             CCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChh
Confidence            7999999999999999999999999999999999875     56899999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD  162 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~  162 (239)
                      |||++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|+||||+++|||++|..||....    
T Consensus       472 NILl~~~g~ikL~DFGla~~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~----  546 (674)
T 3pfq_A          472 NVMLDSEGHIKIADFGMCKENIWDG-VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED----  546 (674)
T ss_dssp             TEEECSSSCEEECCCTTCEECCCTT-CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS----
T ss_pred             hEEEcCCCcEEEeecceeeccccCC-cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCC----
Confidence            9999999999999999987542221 22446679999999999999999999999999999999999999986422    


Q ss_pred             ccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH-----HHHHH
Q 044155          163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM-----VDVAK  227 (239)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~-----~ell~  227 (239)
                                       ..+....+.......  +...+.++.+||.+||+.||.+||++     +|+++
T Consensus       547 -----------------~~~~~~~i~~~~~~~--p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~  597 (674)
T 3pfq_A          547 -----------------EDELFQSIMEHNVAY--PKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  597 (674)
T ss_dssp             -----------------HHHHHHHHHSSCCCC--CTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred             -----------------HHHHHHHHHhCCCCC--CccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence                             112222222222211  12456778999999999999999997     66653

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=1.5e-38  Score=251.77  Aligned_cols=191  Identities=16%  Similarity=0.199  Sum_probs=150.0

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+.+..++||||+++++|.+++...... ...+++..+..++.|++.||.|||   +++++|+||||+
T Consensus        69 ~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~  144 (289)
T 1x8b_A           69 QHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRI-MSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPS  144 (289)
T ss_dssp             SCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGG
T ss_pred             CCCCeeeeeeeeecCCeEEEEEEecCCCcHHHHHHhhccc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHH
Confidence            8999999999999999999999999999999999764210 035789999999999999999999   899999999999


Q ss_pred             ceeecCC-------------------CceeEcccccccccCCCCcceeecccccccccCccccccC-Ccccccchhhhhh
Q 044155           83 CILFNEE-------------------NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSV  142 (239)
Q Consensus        83 nil~~~~-------------------~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~  142 (239)
                      ||+++.+                   ..++|+|||.+.......     ...+++.|+|||.+.+. .++.++||||||+
T Consensus       145 NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~  219 (289)
T 1x8b_A          145 NIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQ-----VEEGDSRFLANEVLQENYTHLPKADIFALAL  219 (289)
T ss_dssp             GEEEC--------------------CCCEEECCCTTCEETTCSC-----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCcc-----ccCCCccccChhHhcCCCCCCchhhHHHHHH
Confidence            9999844                   478999999987654322     33488999999999865 5678999999999


Q ss_pred             HHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          143 FLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       143 ~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                      ++|+|++|..++.....                    .....    ..... ..+...+..+.+++.+||+.||.+|||+
T Consensus       220 il~~l~~~~~~~~~~~~--------------------~~~~~----~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rps~  274 (289)
T 1x8b_A          220 TVVCAAGAEPLPRNGDQ--------------------WHEIR----QGRLP-RIPQVLSQEFTELLKVMIHPDPERRPSA  274 (289)
T ss_dssp             HHHHHTTCCCCCSSSHH--------------------HHHHH----TTCCC-CCSSCCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHHHhcCCCCCcchhH--------------------HHHHH----cCCCC-CCCcccCHHHHHHHHHHhCCCcccCCCH
Confidence            99999999876532110                    00000    00000 0011345678999999999999999999


Q ss_pred             HHHHH
Q 044155          223 VDVAK  227 (239)
Q Consensus       223 ~ell~  227 (239)
                      .|+++
T Consensus       275 ~~ll~  279 (289)
T 1x8b_A          275 MALVK  279 (289)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            99986

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=1.8e-38  Score=256.69  Aligned_cols=218  Identities=20%  Similarity=0.290  Sum_probs=154.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.++....     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        80 ~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlk  151 (331)
T 4aaa_A           80 QLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFP-----NGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIK  151 (331)
T ss_dssp             HCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHST-----TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred             hCCCCCEeeEEEEeecCCEEEEEEecCCcchHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcC
Confidence            378999999999999999999999999988888776654     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.++|+|||++....... .......+++.|+|||.+.+. .++.++||||||+++|+|++|..||.....
T Consensus       152 p~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  230 (331)
T 4aaa_A          152 PENILVSQSGVVKLCDFGFARTLAAPG-EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSD  230 (331)
T ss_dssp             GGGEEECTTSCEEECCCTTC-------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             hheEEEcCCCcEEEEeCCCceeecCCc-cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence            999999999999999999987553221 122345689999999999875 688999999999999999999999875443


Q ss_pred             ccccccc------chhhhhhhhhccchhh-hhhhhhhcCCC-cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCP------FSEYLKNCFEDNRFTE-IVDHIVVEDVS-SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .......      ........+....... ........... .......++.+.+++.+||+.||.+|||+.|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          231 IDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             HHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            2111100      0000000000000000 00000000000 0011134677999999999999999999999986

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=9.3e-38  Score=263.55  Aligned_cols=212  Identities=17%  Similarity=0.177  Sum_probs=163.3

Q ss_pred             CCC-cccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MSH-NHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~H-~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      |+| ++|..+..++......++||||+ +++|.+++....    ..+++..++.++.||+.||.|||   .++|+|+|||
T Consensus        59 L~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~~~~----~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIK  130 (483)
T 3sv0_A           59 LQGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFCS----RKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIK  130 (483)
T ss_dssp             TTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred             hcCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccC
Confidence            444 56666666677788889999999 799999998543    56899999999999999999999   8999999999


Q ss_pred             Ccceee---cCCCceeEcccccccccCCCCc------ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCC
Q 044155           81 TSCILF---NEENVAKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        81 ~~nil~---~~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      |+|||+   +.++.+||+|||+++.......      .......|++.|+|||++.+..++.++||||||+++|+|++|.
T Consensus       131 P~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~  210 (483)
T 3sv0_A          131 PDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGS  210 (483)
T ss_dssp             GGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             cceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCC
Confidence            999999   5788999999999976543321      1123567899999999999999999999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||..........              ............. ........+.++.+++..||+.||.+||++.+|++.|++
T Consensus       211 ~Pf~~~~~~~~~~--------------~~~~i~~~~~~~~-~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~  275 (483)
T 3sv0_A          211 LPWQGLKAGTKKQ--------------KYEKISEKKVATS-IEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRD  275 (483)
T ss_dssp             CTTSSCCCSSHHH--------------HHHHHHHHHHHSC-HHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHH
T ss_pred             CCCccccchhHHH--------------HHHHHhhcccccc-HHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHH
Confidence            9997543211110              0001111111000 011112345788999999999999999999999999999


Q ss_pred             HHHhh
Q 044155          232 IYRSL  236 (239)
Q Consensus       232 l~~~~  236 (239)
                      +....
T Consensus       276 l~~~~  280 (483)
T 3sv0_A          276 LFIRE  280 (483)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            87754

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.7e-38  Score=256.21  Aligned_cols=197  Identities=20%  Similarity=0.283  Sum_probs=148.5

Q ss_pred             CCcccceeeEEEEe------CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            3 SHNHILKLIGCCLE------TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         3 ~H~niv~l~~~~~~------~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +||||+++++++..      ....++||||+++++|.+++.....   ..++...+..++.|++.||.|||   +.+++|
T Consensus        79 ~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH  152 (326)
T 2x7f_A           79 HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKG---NTLKEEWIAYICREILRGLSHLH---QHKVIH  152 (326)
T ss_dssp             CSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGG---GCCCHHHHHHHHHHHHHHHHHHH---HTTCCC
T ss_pred             CCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccc
Confidence            79999999999987      4578999999998999999987532   46889999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc-----cCCcccccchhhhhhHHHHHhcCC
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      +||||+||+++.++.++|+|||++....... .......|++.|+|||++.     ...++.++||||||+++|+|++|.
T Consensus       153 ~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~  231 (326)
T 2x7f_A          153 RDIKGQNVLLTENAEVKLVDFGVSAQLDRTV-GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGA  231 (326)
T ss_dssp             CCCSGGGEEECTTCCEEECCCTTTC--------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSS
T ss_pred             cCCcHHHEEEcCCCCEEEeeCcCceecCcCc-cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCC
Confidence            9999999999999999999999987653221 1223456899999999987     456889999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .||........                     .................+..+.++|.+||..||.+|||+.++++
T Consensus       232 ~p~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          232 PPLCDMHPMRA---------------------LFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             CTTTTSCHHHH---------------------HHHHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CCCCCCcHHHH---------------------HHHhhcCccccCCccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            99854321100                     00000000000001133567889999999999999999999987

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.3e-38  Score=255.90  Aligned_cols=211  Identities=16%  Similarity=0.196  Sum_probs=155.0

Q ss_pred             CCCcccceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            2 MSHNHILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      ++||||+++++++....      ..++||||+ +++|.+++..      ..++...+..++.|++.||.|||   +.+++
T Consensus        81 l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~------~~l~~~~~~~~~~qi~~~L~~LH---~~~iv  150 (367)
T 1cm8_A           81 MRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH------EKLGEDRIQFLVYQMLKGLRYIH---AAGII  150 (367)
T ss_dssp             CCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred             CCCcCCCCceeeEecCCccccCceEEEEEecC-CCCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCcc
Confidence            68999999999998653      459999999 6999999976      35889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      ||||||+||+++.++.+||+|||++......    .....+|+.|+|||++.+ ..++.++|||||||++|+|++|+.||
T Consensus       151 H~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf  226 (367)
T 1cm8_A          151 HRDLKPGNLAVNEDCELKILDFGLARQADSE----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLF  226 (367)
T ss_dssp             CCCCCGGGEEECTTCCEEECCCTTCEECCSS----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred             ccCcCHHHEEEcCCCCEEEEeeecccccccc----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999998765332    234568999999999887 67899999999999999999999999


Q ss_pred             ccccccccccc-------cchhhhhhhhhccchhhhhhhhhh--cCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 044155          155 DLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVV--EDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV  225 (239)
Q Consensus       155 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~el  225 (239)
                      ...........       +..++... ...............  ...........++.+.+++.+||..||.+|||++|+
T Consensus       227 ~~~~~~~~l~~i~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~  305 (367)
T 1cm8_A          227 KGSDHLDQLKEIMKVTGTPPAEFVQR-LQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA  305 (367)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCHHHHHT-CSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             CCCCHHHHHHHHHHhcCCCCHHHHHH-hhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHH
Confidence            75432211100       00000000 000000000000000  000000011345678999999999999999999999


Q ss_pred             HH
Q 044155          226 AK  227 (239)
Q Consensus       226 l~  227 (239)
                      ++
T Consensus       306 l~  307 (367)
T 1cm8_A          306 LA  307 (367)
T ss_dssp             HH
T ss_pred             hc
Confidence            87

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=4.2e-39  Score=254.24  Aligned_cols=202  Identities=20%  Similarity=0.275  Sum_probs=155.1

Q ss_pred             CCCCcccceeeEEEEe--CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC-----
Q 044155            1 QMSHNHILKLIGCCLE--TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP-----   73 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~--~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~-----   73 (239)
                      +++||||+++++++..  +...++||||+++++|.+++...... ...+++..+..++.|++.||.|||   ..+     
T Consensus        61 ~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~  136 (279)
T 2w5a_A           61 ELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKE-RQYLDEEFVLRVMTQLTLALKECH---RRSDGGHT  136 (279)
T ss_dssp             HCCCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHH---HHC-----
T ss_pred             hcCCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHHHHHhhccc-CCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCe
Confidence            3689999999998864  56789999999989999999764211 145889999999999999999999   777     


Q ss_pred             eeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCC
Q 044155           74 IVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        74 i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      ++|+||||+||+++.++.++|+|||.+....... .......+++.|+|||.+.+..++.++||||||+++|+|++|..|
T Consensus       137 ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p  215 (279)
T 2w5a_A          137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHDT-SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPP  215 (279)
T ss_dssp             -CCCCCSGGGEEECSSSCEEECCCCHHHHC---C-HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCS
T ss_pred             eEEeccchhhEEEcCCCCEEEecCchheeecccc-ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999999999987653322 112345688999999999988899999999999999999999999


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |.....                     .+........... ..+...+..+.+++.+||+.||.+|||+.|+++.+
T Consensus       216 ~~~~~~---------------------~~~~~~i~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~  269 (279)
T 2w5a_A          216 FTAFSQ---------------------KELAGKIREGKFR-RIPYRYSDELNEIITRMLNLKDYHRPSVEEILENP  269 (279)
T ss_dssp             SCCSSH---------------------HHHHHHHHHTCCC-CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred             CcccCH---------------------HHHHHHHhhcccc-cCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence            864321                     0111111111110 00113456789999999999999999999998754

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=1.8e-38  Score=257.29  Aligned_cols=202  Identities=19%  Similarity=0.267  Sum_probs=136.5

Q ss_pred             CCCcccceeeEEEEe----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeec
Q 044155            2 MSHNHILKLIGCCLE----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFR   77 (239)
Q Consensus         2 l~H~niv~l~~~~~~----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~   77 (239)
                      ++||||+++++++..    +...++||||+++++|.+++.....   ..+++..+..++.|++.||.|||   +.+++|+
T Consensus        79 ~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~---~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~  152 (336)
T 3fhr_A           79 SGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGD---QAFTEREAAEIMRDIGTAIQFLH---SHNIAHR  152 (336)
T ss_dssp             TTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-C---CCCBHHHHHHHHHHHHHHHHHHH---HTTEECS
T ss_pred             cCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCeecC
Confidence            589999999999986    3457899999999999999987543   46899999999999999999999   8999999


Q ss_pred             cccCcceeecCC---CceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           78 NFKTSCILFNEE---NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        78 dlk~~nil~~~~---~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      ||||+||+++.+   +.++|+|||++......   ......+++.|+|||++.+..++.++||||||+++|+|++|..||
T Consensus       153 dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf  229 (336)
T 3fhr_A          153 DVKPENLLYTSKEKDAVLKLTDFGFAKETTQN---ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPF  229 (336)
T ss_dssp             CCSGGGEEESCSSTTCCEEECCCTTCEEC-------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CCCHHHEEEEecCCCceEEEeccccceecccc---ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence            999999999864   45999999998755322   123456799999999998888999999999999999999999998


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...........              ....+... ............+..+.+++.+||+.||.+|||+.|+++
T Consensus       230 ~~~~~~~~~~~--------------~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  287 (336)
T 3fhr_A          230 YSNTGQAISPG--------------MKRRIRLG-QYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN  287 (336)
T ss_dssp             ------------------------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CCccchhhhhh--------------HHHhhhcc-ccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            64332111000              00000000 000000011134567889999999999999999999997

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=7.9e-38  Score=258.43  Aligned_cols=212  Identities=17%  Similarity=0.228  Sum_probs=154.3

Q ss_pred             CCcccceeeEEEE----eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC-Ceeec
Q 044155            3 SHNHILKLIGCCL----ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR-PIVFR   77 (239)
Q Consensus         3 ~H~niv~l~~~~~----~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~-~i~H~   77 (239)
                      +|+||+++++++.    ++...++||||+. ++|.+.+.....   ..++...++.++.||+.||.|||   ++ +|+||
T Consensus        99 ~~~~iv~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~lH---~~~givHr  171 (397)
T 1wak_A           99 NREMVVQLLDDFKISGVNGTHICMVFEVLG-HHLLKWIIKSNY---QGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHT  171 (397)
T ss_dssp             GGGGBCCEEEEEEEEETTEEEEEEEECCCC-CBHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHH---HTTCEECC
T ss_pred             CcceeeeeecceeecCCCCceEEEEEeccC-ccHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHH---HhCCEecC
Confidence            4899999999988    4557899999995 777777765432   56899999999999999999999   77 99999


Q ss_pred             cccCcceeecCCC-------------------------------------------------ceeEcccccccccCCCCc
Q 044155           78 NFKTSCILFNEEN-------------------------------------------------VAKLFDFSLSISIPEGET  108 (239)
Q Consensus        78 dlk~~nil~~~~~-------------------------------------------------~~~l~dfg~~~~~~~~~~  108 (239)
                      ||||+|||++.++                                                 .++|+|||.+......  
T Consensus       172 Dikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~--  249 (397)
T 1wak_A          172 DIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH--  249 (397)
T ss_dssp             CCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC--
T ss_pred             CCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc--
Confidence            9999999999775                                                 7999999998765332  


Q ss_pred             ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccccccccc-chhhhhhhhhc--------cc
Q 044155          109 HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCP-FSEYLKNCFED--------NR  179 (239)
Q Consensus       109 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~--------~~  179 (239)
                        .....||+.|+|||++.+..++.++||||||+++|+|++|..||............ ...........        ..
T Consensus       250 --~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  327 (397)
T 1wak_A          250 --FTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGK  327 (397)
T ss_dssp             --SCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCT
T ss_pred             --CccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhccc
Confidence              22446899999999999988999999999999999999999999754432111000 00000000000        00


Q ss_pred             hh-hh-----------------hhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          180 FT-EI-----------------VDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       180 ~~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .. ..                 ....+.....  .....+..+.+||.+||+.||.+|||++|+++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          328 YSKEFFTKKGDLKHITKLKPWGLFEVLVEKYE--WSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             TGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSC--CCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             ccccccCCccccccccccCCcchhHhhhhhcc--cchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence            00 00                 0000000000  12356778999999999999999999999985

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=1.3e-38  Score=261.45  Aligned_cols=206  Identities=8%  Similarity=0.024  Sum_probs=142.0

Q ss_pred             CCcccceee-------EEEEeCC-----------------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHH------
Q 044155            3 SHNHILKLI-------GCCLETP-----------------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHR------   52 (239)
Q Consensus         3 ~H~niv~l~-------~~~~~~~-----------------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~------   52 (239)
                      +||||++++       +++...+                 ..++||||++ ++|.+++....    ..++...+      
T Consensus       122 ~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~----~~~~~~~~~~~~vk  196 (371)
T 3q60_A          122 ESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD----FVYVFRGDEGILAL  196 (371)
T ss_dssp             ----------CBCCCCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH----HSCCCCHHHHHHHH
T ss_pred             cChhhhhhceeEEeeehheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc----cccchhhhhhhhhH
Confidence            599988755       4554333                 2699999998 89999998642    22344444      


Q ss_pred             HHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc--CC
Q 044155           53 LKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT--GV  130 (239)
Q Consensus        53 ~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~  130 (239)
                      ..++.|++.||+|||   +++|+||||||+|||++.++.+||+|||++.....    ......+++.|+|||++.+  ..
T Consensus       197 ~~i~~qi~~aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~  269 (371)
T 3q60_A          197 HILTAQLIRLAANLQ---SKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT----RGPASSVPVTYAPREFLNASTAT  269 (371)
T ss_dssp             HHHHHHHHHHHHHHH---HTTEEETTCSGGGEEECTTSCEEECCGGGEEETTC----EEEGGGSCGGGCCHHHHTCSEEE
T ss_pred             HHHHHHHHHHHHHHH---HCCCccCcCCHHHEEECCCCCEEEEecceeeecCC----CccCccCCcCCcChhhccCCCCC
Confidence            677899999999999   89999999999999999999999999999876532    1224556799999999987  67


Q ss_pred             cccccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhh
Q 044155          131 FNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFE  210 (239)
Q Consensus       131 ~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  210 (239)
                      ++.++||||||+++|+|++|..||...........          .......    ..............++.+.++|.+
T Consensus       270 ~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~----------~~~~~~~----~~~~~~~~~~~~~~~~~~~~li~~  335 (371)
T 3q60_A          270 FTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSW----------KRPSLRV----PGTDSLAFGSCTPLPDFVKTLIGR  335 (371)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCC----------CBCCTTS----CCCCSCCCTTSSCCCHHHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHhCCCCCCCcCcccccch----------hhhhhhh----ccccccchhhccCCCHHHHHHHHH
Confidence            89999999999999999999999975532211100          0000000    000000000011345678999999


Q ss_pred             hcCCCCCCCCCHHHHHH--HHHHHHH
Q 044155          211 CIKDSPADRPSMVDVAK--KLRQIYR  234 (239)
Q Consensus       211 cl~~dp~~Rps~~ell~--~L~~l~~  234 (239)
                      ||+.||++|||+.++++  +++++..
T Consensus       336 ~L~~dP~~Rpt~~e~l~hp~f~~~~~  361 (371)
T 3q60_A          336 FLNFDRRRRLLPLEAMETPEFLQLQN  361 (371)
T ss_dssp             HTCSSTTTCCCHHHHTTSHHHHHHHH
T ss_pred             HcCCChhhCCCHHHHhcCHHHHHHHH
Confidence            99999999999999986  5555443

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.1e-38  Score=261.95  Aligned_cols=154  Identities=20%  Similarity=0.273  Sum_probs=119.9

Q ss_pred             CCCCcccceeeEEEEe--CCCceEEEEEccCCChhhhhhcCCC----CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLE--TPIPILVFESVQYGTLWDRILGAPQ----PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~--~~~~~iv~e~~~~~sL~~~l~~~~~----~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +|+||||+++++++..  ....++||||+. ++|.+++.....    .....+++..++.++.||+.||.|||   +.+|
T Consensus        74 ~l~hpniv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~i  149 (405)
T 3rgf_A           74 ELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWV  149 (405)
T ss_dssp             HCCCTTBCCCCEEEEETTTTEEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTC
T ss_pred             hcCCCCeeeEeeEEecCCCCeEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCE
Confidence            3789999999999965  567899999997 788888763211    01135889999999999999999999   8999


Q ss_pred             eeccccCcceee----cCCCceeEcccccccccCCCCc--ceeecccccccccCccccccC-CcccccchhhhhhHHHHH
Q 044155           75 VFRNFKTSCILF----NEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFEL  147 (239)
Q Consensus        75 ~H~dlk~~nil~----~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~  147 (239)
                      +||||||+|||+    +.++.+||+|||++........  .......||+.|+|||++.+. .++.++|||||||++|+|
T Consensus       150 vH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~el  229 (405)
T 3rgf_A          150 LHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAEL  229 (405)
T ss_dssp             CCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred             eCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHH
Confidence            999999999999    6778999999999976543211  223456789999999999874 489999999999999999


Q ss_pred             hcCCCCccccc
Q 044155          148 LTGWDVSDLVK  158 (239)
Q Consensus       148 ~~g~~p~~~~~  158 (239)
                      ++|..||....
T Consensus       230 l~g~~pf~~~~  240 (405)
T 3rgf_A          230 LTSEPIFHCRQ  240 (405)
T ss_dssp             HHSSCTTCCCC
T ss_pred             HhCCCCCCCcc
Confidence            99999996543

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=6.8e-38  Score=249.55  Aligned_cols=194  Identities=24%  Similarity=0.324  Sum_probs=156.4

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+....++||||+++++|.+++...     ..++...+..++.|++.||.|||   +.+++|+||||+
T Consensus        82 ~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~  153 (298)
T 1phk_A           82 GHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK-----VTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPE  153 (298)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGG
T ss_pred             CCCCEeeeeeeeccCCeEEEEEeccCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcc
Confidence            4999999999999999999999999999999999865     56889999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc------cCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR------TGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      ||+++.++.++|+|||.+.......  ......+++.|+|||++.      ...++.++||||||+++|+|++|..||..
T Consensus       154 Nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  231 (298)
T 1phk_A          154 NILLDDDMNIKLTDFGFSCQLDPGE--KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH  231 (298)
T ss_dssp             GEEECTTCCEEECCCTTCEECCTTC--CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             eEEEcCCCcEEEecccchhhcCCCc--ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcC
Confidence            9999999999999999987654332  223456889999999885      34578899999999999999999999854


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                     ............  .......+..+.+++.+||+.||.+|||+.|+++
T Consensus       232 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          232 RKQM---------------------LMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             SSHH---------------------HHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             ccHH---------------------HHHHHHhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence            2210                     011111111110  1111244567899999999999999999999985

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=2e-37  Score=250.24  Aligned_cols=208  Identities=16%  Similarity=0.205  Sum_probs=153.2

Q ss_pred             CCcccceeeEEEEe--CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            3 SHNHILKLIGCCLE--TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         3 ~H~niv~l~~~~~~--~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      .||||+++++++.+  ....++||||+.+++|.+++.        .++...+..++.|++.||.|||   +.+++|+|||
T Consensus        89 ~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~--------~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dik  157 (330)
T 3nsz_A           89 GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ--------TLTDYDIRFYMYEILKALDYCH---SMGIMHRDVK  157 (330)
T ss_dssp             TSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGG--------GCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             CCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHH--------hCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCC
Confidence            39999999999987  567899999999999998883        4788999999999999999999   8999999999


Q ss_pred             CcceeecCCC-ceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+||+++.++ .++|+|||++........  .....++..|+|||.+.+ ..++.++||||||+++|+|++|..||....
T Consensus       158 p~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~  235 (330)
T 3nsz_A          158 PHNVMIDHEHRKLRLIDWGLAEFYHPGQE--YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH  235 (330)
T ss_dssp             GGGEEEETTTTEEEECCCTTCEECCTTCC--CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred             HHHEEEcCCCCEEEEEeCCCceEcCCCCc--cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCC
Confidence            9999999777 899999999976543322  234568899999999877 668999999999999999999999985332


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhh-----------hh--------hcCCCcHHHHHHHHHHHHHHhhhcCCCCCCC
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDH-----------IV--------VEDVSSIEKEQQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~--------~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R  219 (239)
                      ..........    .........+....           ..        ............++.+.++|.+||+.||.+|
T Consensus       236 ~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  311 (330)
T 3nsz_A          236 DNYDQLVRIA----KVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSR  311 (330)
T ss_dssp             SHHHHHHHHH----HHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGS
T ss_pred             chHHHHHHHH----HhcCCchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccC
Confidence            2111100000    00000000000000           00        0000001111246788999999999999999


Q ss_pred             CCHHHHHH
Q 044155          220 PSMVDVAK  227 (239)
Q Consensus       220 ps~~ell~  227 (239)
                      ||++|+++
T Consensus       312 pta~e~l~  319 (330)
T 3nsz_A          312 LTAREAME  319 (330)
T ss_dssp             CCHHHHHT
T ss_pred             CCHHHHhc
Confidence            99999987

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=1.2e-37  Score=257.49  Aligned_cols=215  Identities=18%  Similarity=0.234  Sum_probs=152.2

Q ss_pred             CCCCcccceeeEEEEeCCC------ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETPI------PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~------~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++...+.      .++||||++ +++.+.+..... ....++...+..++.|++.||.|||   +.+|
T Consensus        88 ~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~LH---~~~i  162 (394)
T 4e7w_A           88 IVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVP-ETVYRASRHYAK-LKQTMPMLLIKLYMYQLLRSLAYIH---SIGI  162 (394)
T ss_dssp             TCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCS-EEHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred             hCCCCCcceEEEEEEecCCCCCceEEEEEeeccC-ccHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHH---HCCc
Confidence            4789999999999976543      679999998 455554432110 0156889999999999999999999   8999


Q ss_pred             eeccccCcceeec-CCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCC
Q 044155           75 VFRNFKTSCILFN-EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        75 ~H~dlk~~nil~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      +||||||+||+++ .++.+||+|||+++......  ......+|+.|+|||++.+. .++.++||||||+++|+|++|..
T Consensus       163 vHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~  240 (394)
T 4e7w_A          163 CHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGE--PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQP  240 (394)
T ss_dssp             ECSCCSGGGEEEETTTTEEEECCCTTCEECCTTC--CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCC--CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999 78999999999997653332  12345689999999998765 58999999999999999999999


Q ss_pred             Ccccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCCCcHH----HHHHHHHHHHHHhhhcCCCCCCCCC
Q 044155          153 VSDLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVSSIE----KEQQLHASAQVTFECIKDSPADRPS  221 (239)
Q Consensus       153 p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~cl~~dp~~Rps  221 (239)
                      ||...........       +..+.....  ...+   .............    ....++.+.+++.+||+.||.+|||
T Consensus       241 pf~~~~~~~~l~~i~~~~g~p~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  315 (394)
T 4e7w_A          241 LFPGESGIDQLVEIIKVLGTPSREQIKTM--NPNY---MEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLT  315 (394)
T ss_dssp             SSCCSSHHHHHHHHHHHHCCCCHHHHHHH--CGGG---SSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCC
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCHHHHHhh--Chhh---hhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCC
Confidence            9975432211110       000000000  0000   0000000000000    0124567899999999999999999


Q ss_pred             HHHHHH
Q 044155          222 MVDVAK  227 (239)
Q Consensus       222 ~~ell~  227 (239)
                      +.|+++
T Consensus       316 ~~e~l~  321 (394)
T 4e7w_A          316 AIEALC  321 (394)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999986

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=1.1e-37  Score=248.45  Aligned_cols=199  Identities=19%  Similarity=0.326  Sum_probs=145.2

Q ss_pred             CCCCcccceeeEEEEe-------------CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHh
Q 044155            1 QMSHNHILKLIGCCLE-------------TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLH   67 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~-------------~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH   67 (239)
                      +++||||+++++++.+             ....++||||+++++|.+++....    ..++...+..++.|++.||.|||
T Consensus        58 ~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~~l~~LH  133 (303)
T 1zy4_A           58 SLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSEN----LNQQRDEYWRLFRQILEALSYIH  133 (303)
T ss_dssp             TCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHHSC----GGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhccc----cccchHHHHHHHHHHHHHHHHHH
Confidence            4789999999999865             345789999999999999998643    46788899999999999999999


Q ss_pred             hCCCCCeeeccccCcceeecCCCceeEcccccccccCCCC-------------cceeecccccccccCccccccC-Cccc
Q 044155           68 FGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-------------THITDTVMGTLGYCAPEYMRTG-VFNE  133 (239)
Q Consensus        68 ~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~-------------~~~~~~~~~~~~y~aPE~~~~~-~~~~  133 (239)
                         +.+++|+||||+||+++.++.++|+|||.+.......             ........|++.|+|||++.+. .++.
T Consensus       134 ---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  210 (303)
T 1zy4_A          134 ---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNE  210 (303)
T ss_dssp             ---HTTCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCT
T ss_pred             ---hCCeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcc
Confidence               8999999999999999999999999999987553211             1122345688999999999864 6899


Q ss_pred             ccchhhhhhHHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcC
Q 044155          134 KSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIK  213 (239)
Q Consensus       134 ~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  213 (239)
                      ++||||||+++|+|+++   |....+..                 .....+... ............+..+.+++.+||+
T Consensus       211 ~~Di~slG~il~~l~~p---~~~~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~  269 (303)
T 1zy4_A          211 KIDMYSLGIIFFEMIYP---FSTGMERV-----------------NILKKLRSV-SIEFPPDFDDNKMKVEKKIIRLLID  269 (303)
T ss_dssp             HHHHHHHHHHHHHHHSC---CSSHHHHH-----------------HHHHHHHST-TCCCCTTCCTTTSHHHHHHHHHHTC
T ss_pred             hhhHHHHHHHHHHHHhc---cCCchhHH-----------------HHHHhcccc-ccccCccccccchHHHHHHHHHHHh
Confidence            99999999999999983   32111000                 000000000 0001111112344668899999999


Q ss_pred             CCCCCCCCHHHHHH
Q 044155          214 DSPADRPSMVDVAK  227 (239)
Q Consensus       214 ~dp~~Rps~~ell~  227 (239)
                      .||.+|||+.++++
T Consensus       270 ~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          270 HDPNKRPGARTLLN  283 (303)
T ss_dssp             SSGGGSCCHHHHHH
T ss_pred             cCcccCcCHHHHhC
Confidence            99999999999986

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=8.7e-37  Score=246.96  Aligned_cols=212  Identities=20%  Similarity=0.270  Sum_probs=156.9

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .|++|+++++++.+.+..++||||+ +++|.+++.....   ..++...+..++.|++.||+|||   +++++|+||||+
T Consensus        75 ~~~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~  147 (339)
T 1z57_A           75 STFRCVQMLEWFEHHGHICIVFELL-GLSTYDFIKENGF---LPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPE  147 (339)
T ss_dssp             CTTCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGG
T ss_pred             CceeeEeeecccccCCcEEEEEcCC-CCCHHHHHHhcCC---CCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHH
Confidence            4667999999999999999999999 6999999987643   46889999999999999999999   899999999999


Q ss_pred             ceeecC-------------------CCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhH
Q 044155           83 CILFNE-------------------ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVF  143 (239)
Q Consensus        83 nil~~~-------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~  143 (239)
                      ||+++.                   ++.++|+|||++......    .....||+.|+|||++.+..++.++||||||++
T Consensus       148 Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~i  223 (339)
T 1z57_A          148 NILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEH----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCI  223 (339)
T ss_dssp             GEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSC----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHH
T ss_pred             HEEEeccccccccCCccccccccccCCCceEeeCcccccCccc----cccccCCccccChHHhhCCCCCcchhhHHHHHH
Confidence            999987                   567999999998764332    234568999999999998899999999999999


Q ss_pred             HHHHhcCCCCcccccccccc------cccchhhhhhhhhcc--------chhh------hhhhh---hhcCCCcHHHHHH
Q 044155          144 LFELLTGWDVSDLVKDVHDL------VCPFSEYLKNCFEDN--------RFTE------IVDHI---VVEDVSSIEKEQQ  200 (239)
Q Consensus       144 l~~~~~g~~p~~~~~~~~~~------~~~~~~~~~~~~~~~--------~~~~------~~~~~---~~~~~~~~~~~~~  200 (239)
                      +|+|++|..||.........      ..+.+..........        .+..      .....   .....  ......
T Consensus       224 l~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  301 (339)
T 1z57_A          224 LIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFM--LSQDVE  301 (339)
T ss_dssp             HHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGC--SCCSHH
T ss_pred             HHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhc--ccchhh
Confidence            99999999999754321110      000000000000000        0000      00000   00000  001245


Q ss_pred             HHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          201 LHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       201 ~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ++.+.+++.+||+.||.+|||+.|+++
T Consensus       302 ~~~l~~li~~~L~~dP~~Rpt~~ell~  328 (339)
T 1z57_A          302 HERLFDLIQKMLEYDPAKRITLREALK  328 (339)
T ss_dssp             HHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             HHHHHHHHHHHhCcCcccccCHHHHhc
Confidence            678999999999999999999999985

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=7.5e-38  Score=256.35  Aligned_cols=211  Identities=19%  Similarity=0.235  Sum_probs=142.0

Q ss_pred             CCCcccceeeEEEEeC------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            2 MSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         2 l~H~niv~l~~~~~~~------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      ++||||+++++++...      ...++|+|++ +++|.+++..      ..++...+..++.|++.||.|||   +.+++
T Consensus        85 l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~------~~l~~~~~~~i~~qi~~aL~~LH---~~giv  154 (367)
T 2fst_X           85 MKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC------QKLTDDHVQFLIYQILRGLKYIH---SADII  154 (367)
T ss_dssp             CCCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC-----------CCCCHHHHHHHHHHHHHHHHHHH---HTTCC
T ss_pred             CCCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCee
Confidence            6899999999998754      5678999999 5899998865      45889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      ||||||+||+++.++.+||+|||+++.....    .....+|+.|+|||++.+ ..++.++|||||||++|+|++|+.||
T Consensus       155 H~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf  230 (367)
T 2fst_X          155 HRDLKPSNLAVNEDCELKILDFGLARHTADE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLF  230 (367)
T ss_dssp             CCCCCGGGEEECTTCCEEECC-------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred             eCCCCHhhEEECCCCCEEEeecccccccccc----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999998764322    234568999999999887 67899999999999999999999999


Q ss_pred             ccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 044155          155 DLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKDSPADRPSMVDV  225 (239)
Q Consensus       155 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~~el  225 (239)
                      ...........       +..+..... ....................  .....++.+.+|+.+||..||.+|||+.|+
T Consensus       231 ~~~~~~~~l~~i~~~~g~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~  309 (367)
T 2fst_X          231 PGTDHIDQLKLILRLVGTPGAELLKKI-SSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQA  309 (367)
T ss_dssp             CCSSHHHHHHHHHHHHCSCCHHHHTTC-CCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             CCCCHHHHHHHHHHHhCCCCHHHHHHh-hhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHH
Confidence            75432211100       000000000 00000000000000000000  011335678999999999999999999999


Q ss_pred             HH
Q 044155          226 AK  227 (239)
Q Consensus       226 l~  227 (239)
                      ++
T Consensus       310 L~  311 (367)
T 2fst_X          310 LA  311 (367)
T ss_dssp             HT
T ss_pred             hc
Confidence            86

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=1.4e-37  Score=254.67  Aligned_cols=216  Identities=16%  Similarity=0.182  Sum_probs=155.0

Q ss_pred             CCCCcccceeeEEEEeC-----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~-----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++...     ...++|||++. ++|.+++..      ..++...+..++.|++.||.|||   +.+++
T Consensus        81 ~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~-~~L~~~l~~------~~~~~~~~~~i~~qi~~aL~~LH---~~~iv  150 (364)
T 3qyz_A           81 RFRHENIIGINDIIRAPTIEQMKDVYIVQDLME-TDLYKLLKT------QHLSNDHICYFLYQILRGLKYIH---SANVL  150 (364)
T ss_dssp             HCCCTTBCCCCEEECCSSTTTCCCEEEEEECCS-EEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred             hcCCCCCccceeEEecCCccccceEEEEEcccC-cCHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHH---HCCee
Confidence            37899999999999755     35789999997 799999976      45889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCC
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      |+||||+||+++.++.++|+|||++.........  ......||+.|+|||++.+ ..++.++||||||+++|+|++|..
T Consensus       151 H~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~  230 (364)
T 3qyz_A          151 HRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRP  230 (364)
T ss_dssp             CCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999998765322211  1234578999999998765 458999999999999999999999


Q ss_pred             Cccccccccccccc-------chhhhhhhhhccchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          153 VSDLVKDVHDLVCP-------FSEYLKNCFEDNRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       153 p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      ||............       ..+.... .....................  .....+..+.+++.+||+.||.+|||+.
T Consensus       231 pf~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~  309 (364)
T 3qyz_A          231 IFPGKHYLDQLNHILGILGSPSQEDLNC-IINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVE  309 (364)
T ss_dssp             SSCCSSGGGHHHHHHHHHCSCCHHHHHT-CCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             CCCCCChHHHHHHHHHHhCCCCHHHHHH-hhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHH
Confidence            99654322211100       0000000 000000000000000000000  0113456789999999999999999999


Q ss_pred             HHHH
Q 044155          224 DVAK  227 (239)
Q Consensus       224 ell~  227 (239)
                      |+++
T Consensus       310 e~l~  313 (364)
T 3qyz_A          310 QALA  313 (364)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9986

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=1.6e-37  Score=246.37  Aligned_cols=195  Identities=22%  Similarity=0.325  Sum_probs=155.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....++|||++++++|.+.+...     ..++...+..++.|++.||.|||   +.+++|+|||
T Consensus        77 ~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~  148 (287)
T 2wei_A           77 KLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR-----KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLK  148 (287)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hccCCCccEEEEEEeCCCeEEEEEEccCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence            478999999999999999999999999999999988765     56889999999999999999999   8999999999


Q ss_pred             CcceeecCCC---ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEEN---VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||+++.++   .++|+|||++.......  ......+++.|+|||.+.+ .++.++||||||+++|+|++|..||...
T Consensus       149 p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~  225 (287)
T 2wei_A          149 PENILLESKEKDCDIKIIDFGLSTCFQQNT--KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK  225 (287)
T ss_dssp             GGGEEESCSSTTCCEEECSTTGGGTBCCCS--SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hhhEEEecCCCcccEEEeccCcceeecCCC--ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCC
Confidence            9999997644   69999999987654332  1234458899999998875 4889999999999999999999998643


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                     +..........  ........+..+.+++.+||+.||.+|||+.|+++
T Consensus       226 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          226 NEY---------------------DILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             SHH---------------------HHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CHH---------------------HHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence            211                     11111111111  01111234567899999999999999999999997

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=4.9e-37  Score=245.34  Aligned_cols=197  Identities=15%  Similarity=0.205  Sum_probs=152.1

Q ss_pred             CCCCcccceeeEEEE--eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecc
Q 044155            1 QMSHNHILKLIGCCL--ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRN   78 (239)
Q Consensus         1 ~l~H~niv~l~~~~~--~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~d   78 (239)
                      +++||||+++++++.  +....++||||+++ +|.+++.....   ..++...+..++.|++.||.|||   +++++|+|
T Consensus        62 ~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~---~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~d  134 (305)
T 2wtk_C           62 RLRHKNVIQLVDVLYNEEKQKMYMVMEYCVC-GMQEMLDSVPE---KRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKD  134 (305)
T ss_dssp             TCCCTTBCCEEEEEECC---CEEEEEECCSE-EHHHHHHHSTT---CSCCHHHHHHHHHHHHHHHHHHH---HTTEECSC
T ss_pred             hcCCCCeeEEEEEEEcCCCCeEEEEehhccC-CHHHHHHhCcc---cccCHHHHHHHHHHHHHHHHHHH---HCCeeecC
Confidence            478999999999985  45578999999985 57787776533   57899999999999999999999   89999999


Q ss_pred             ccCcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCC--cccccchhhhhhHHHHHhcCCCCcc
Q 044155           79 FKTSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGV--FNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        79 lk~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~--~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |||+||+++.++.++|+|||.+....... ........+++.|+|||++.+..  .+.++||||||+++|+|++|..||.
T Consensus       135 lkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  214 (305)
T 2wtk_C          135 IKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFE  214 (305)
T ss_dssp             CSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999987654321 22234556899999999987644  4779999999999999999999986


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ....                     .+............  +...+..+.+++.+||+.||.+|||+.|+++
T Consensus       215 ~~~~---------------------~~~~~~i~~~~~~~--~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  263 (305)
T 2wtk_C          215 GDNI---------------------YKLFENIGKGSYAI--PGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQ  263 (305)
T ss_dssp             CSSH---------------------HHHHHHHHHCCCCC--CSSSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CchH---------------------HHHHHHHhcCCCCC--CCccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            3221                     11111111111110  1134567889999999999999999999986

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.7e-36  Score=249.76  Aligned_cols=147  Identities=20%  Similarity=0.224  Sum_probs=126.8

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .|++|+++++++...+..++||||+. ++|.+++.....   ..+++..+..++.|++.||.|||.. ..+|+||||||+
T Consensus       114 ~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~  188 (382)
T 2vx3_A          114 MKYYIVHLKRHFMFRNHLCLVFEMLS-YNLYDLLRNTNF---RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPE  188 (382)
T ss_dssp             GGGGBCCEEEEEEETTEEEEEEECCC-CBHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGG
T ss_pred             cceeEEEeeeeeccCCceEEEEecCC-CCHHHHHhhcCc---CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcc
Confidence            35579999999999999999999996 699999987643   4588999999999999999999932 368999999999


Q ss_pred             ceeec--CCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           83 CILFN--EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        83 nil~~--~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |||++  .++.+||+|||++......    .....+|+.|+|||++.+..++.++||||||+++|+|++|..||....
T Consensus       189 NIll~~~~~~~~kL~DFG~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~  262 (382)
T 2vx3_A          189 NILLCNPKRSAIKIVDFGSSCQLGQR----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGAN  262 (382)
T ss_dssp             GEEESSTTSCCEEECCCTTCEETTCC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cEEEecCCCCcEEEEeccCceecccc----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99995  4678999999998765332    234568999999999999899999999999999999999999997543

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=1.4e-37  Score=260.02  Aligned_cols=203  Identities=17%  Similarity=0.277  Sum_probs=144.3

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCC--CcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHF--EPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +||||+++++++.+....++||||+. |+|.+++........  .......+..++.|++.||+|||   +.+|+|||||
T Consensus        67 ~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLk  142 (434)
T 2rio_A           67 DHPNVIRYYCSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLK  142 (434)
T ss_dssp             TSTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             CCCCcCeEEEEEecCCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCC
Confidence            79999999999999999999999996 799999987532110  00122345679999999999999   8999999999


Q ss_pred             CcceeecCC-------------CceeEcccccccccCCCCcc---eeecccccccccCcccccc-------CCcccccch
Q 044155           81 TSCILFNEE-------------NVAKLFDFSLSISIPEGETH---ITDTVMGTLGYCAPEYMRT-------GVFNEKSNV  137 (239)
Q Consensus        81 ~~nil~~~~-------------~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~-------~~~~~~~Di  137 (239)
                      |+||+++.+             +.+||+|||++.........   ......||+.|+|||++.+       ..++.++||
T Consensus       143 p~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~Di  222 (434)
T 2rio_A          143 PQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDI  222 (434)
T ss_dssp             GGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHH
T ss_pred             hHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhh
Confidence            999999754             47999999999876433211   1234568999999999975       568899999


Q ss_pred             hhhhhHHHHHhc-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCC
Q 044155          138 FSFSVFLFELLT-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSP  216 (239)
Q Consensus       138 ~slG~~l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp  216 (239)
                      ||||+++|+|++ |..||.......      .........            ............+..+.++|.+||+.||
T Consensus       223 wSlG~il~ellt~g~~Pf~~~~~~~------~~i~~~~~~------------~~~~~~~~~~~~~~~~~~li~~~L~~dP  284 (434)
T 2rio_A          223 FSMGCVFYYILSKGKHPFGDKYSRE------SNIIRGIFS------------LDEMKCLHDRSLIAEATDLISQMIDHDP  284 (434)
T ss_dssp             HHHHHHHHHHHTTSCCTTCSTTTHH------HHHHHTCCC------------CCCCTTCCCHHHHHHHHHHHHHHTCSSG
T ss_pred             HhHHHHHHHHHhCCCCCCCCchhhH------HHHhcCCCC------------cccccccccccchHHHHHHHHHHhhCCh
Confidence            999999999999 888885322100      000000000            0000011113566789999999999999


Q ss_pred             CCCCCHHHHHH
Q 044155          217 ADRPSMVDVAK  227 (239)
Q Consensus       217 ~~Rps~~ell~  227 (239)
                      .+|||+.++++
T Consensus       285 ~~Rps~~eil~  295 (434)
T 2rio_A          285 LKRPTAMKVLR  295 (434)
T ss_dssp             GGSCCHHHHHT
T ss_pred             hhCCCHHHHHh
Confidence            99999999985

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=2.7e-37  Score=249.07  Aligned_cols=215  Identities=19%  Similarity=0.257  Sum_probs=156.9

Q ss_pred             CCCcccceeeEEEE-----eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            2 MSHNHILKLIGCCL-----ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         2 l~H~niv~l~~~~~-----~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      ++||||+++++++.     .....++||||+. ++|.+++.....   ..++...+..++.|++.||.|||   +.+++|
T Consensus        71 ~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H  143 (326)
T 1blx_A           71 FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPE---PGVPTETIKDMMFQLLRGLDFLH---SHRVVH  143 (326)
T ss_dssp             TCCTTBCCEEEEEEEEECSSEEEEEEEEECCS-CBHHHHHHHSCT---TCSCHHHHHHHHHHHHHHHHHHH---HTTCCC
T ss_pred             cCCCCeEeeeeeeeecccCCCceEEEEEecCC-CCHHHHHHhccc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcee
Confidence            48999999999987     4557889999998 799999987543   45889999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      +||||+||+++.++.++|+|||++......  .......+++.|+|||++.+..++.++||||||+++|+|++|..||..
T Consensus       144 ~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  221 (326)
T 1blx_A          144 RDLKPQNILVTSSGQIKLADFGLARIYSFQ--MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRG  221 (326)
T ss_dssp             CCCCGGGEEECTTCCEEECSCCSCCCCCGG--GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             ccCCHHHeEEcCCCCEEEecCcccccccCC--CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999999999998654322  123345688999999999988899999999999999999999999875


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhh---hhhhc-CCC--cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVD---HIVVE-DVS--SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ............ ....+ ....+.....   ..... ...  .......+..+.+++.+||+.||.+|||+.|+++
T Consensus       222 ~~~~~~~~~i~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          222 SSDVDQLGKILD-VIGLP-GEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             SSHHHHHHHHHH-HHCCC-CGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CCHHHHHHHHHH-HcCCC-CcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            432211100000 00000 0000000000   00000 000  0001134567889999999999999999999985

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=5.7e-37  Score=251.51  Aligned_cols=212  Identities=17%  Similarity=0.233  Sum_probs=152.2

Q ss_pred             CCcccceeeEEEEeCC----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC-Ceeec
Q 044155            3 SHNHILKLIGCCLETP----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR-PIVFR   77 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~-~i~H~   77 (239)
                      .||||+++++++...+    ..++|||++ +++|.+++.....   ..++...+..++.|++.||.|||   ++ +++|+
T Consensus        84 ~~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~---~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~  156 (373)
T 1q8y_A           84 GANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEH---RGIPLIYVKQISKQLLLGLDYMH---RRCGIIHT  156 (373)
T ss_dssp             HHTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHH---HTTCEECS
T ss_pred             ccchHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhc---cCCcHHHHHHHHHHHHHHHHHHH---hcCCEEec
Confidence            4899999999998654    678999999 7999999987543   45889999999999999999999   77 99999


Q ss_pred             cccCcceeec------CCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCC
Q 044155           78 NFKTSCILFN------EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        78 dlk~~nil~~------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      ||||+||+++      ..+.+||+|||++......    .....+|+.|+|||++.+..++.++||||||+++|+|++|.
T Consensus       157 Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~  232 (373)
T 1q8y_A          157 DIKPENVLMEIVDSPENLIQIKIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGD  232 (373)
T ss_dssp             CCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             CCChHHeEEeccCCCcCcceEEEcccccccccCCC----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCC
Confidence            9999999994      3447999999998765332    22446899999999999988999999999999999999999


Q ss_pred             CCcccccccccccc--cchhhhhhh-------hhccchh----------hh--------hhhhhhcCCCcHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVC--PFSEYLKNC-------FEDNRFT----------EI--------VDHIVVEDVSSIEKEQQLHAS  204 (239)
Q Consensus       152 ~p~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~----------~~--------~~~~~~~~~~~~~~~~~~~~~  204 (239)
                      .||...........  .........       .......          ..        ..........  .+...+..+
T Consensus       233 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  310 (373)
T 1q8y_A          233 FLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYK--FSKDEAKEI  310 (373)
T ss_dssp             CCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTC--CCHHHHHHH
T ss_pred             CCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhccc--CCcchHHHH
Confidence            99975432110000  000000000       0000000          00        0000011110  113667889


Q ss_pred             HHHHhhhcCCCCCCCCCHHHHHH
Q 044155          205 AQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       205 ~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .+||.+||+.||.+|||++|+++
T Consensus       311 ~~li~~~L~~dP~~Rpt~~ell~  333 (373)
T 1q8y_A          311 SDFLSPMLQLDPRKRADAGGLVN  333 (373)
T ss_dssp             HHHHGGGGCSSTTTCBCHHHHHT
T ss_pred             HHHHHHHhccCccccCCHHHHhh
Confidence            99999999999999999999986

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.8e-37  Score=255.68  Aligned_cols=223  Identities=19%  Similarity=0.242  Sum_probs=155.3

Q ss_pred             CCCCcccceeeEEEEeCC--------------------------------------CceEEEEEccCCChhhhhhcCCCC
Q 044155            1 QMSHNHILKLIGCCLETP--------------------------------------IPILVFESVQYGTLWDRILGAPQP   42 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~--------------------------------------~~~iv~e~~~~~sL~~~l~~~~~~   42 (239)
                      +++||||+++++++....                                      ..++||||++ ++|.+.+......
T Consensus        56 ~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~  134 (383)
T 3eb0_A           56 VLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRS  134 (383)
T ss_dssp             TCCCTTBCCEEEEEEEC-------------------------------------CCEEEEEECCCS-EEHHHHHHHHHHT
T ss_pred             HcCCCCccchhheeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhc
Confidence            478999999999985432                                      3789999998 6887777641110


Q ss_pred             CCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeec-CCCceeEcccccccccCCCCcceeeccccccccc
Q 044155           43 HFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFN-EENVAKLFDFSLSISIPEGETHITDTVMGTLGYC  121 (239)
Q Consensus        43 ~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~  121 (239)
                       ...++...+..++.|++.||.|||   +.+++||||||+||+++ .++.+||+|||++.......  ......+++.|+
T Consensus       135 -~~~l~~~~~~~i~~qi~~aL~~LH---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~t~~y~  208 (383)
T 3eb0_A          135 -GRSIPMNLISIYIYQLFRAVGFIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE--PSVAYICSRFYR  208 (383)
T ss_dssp             -TCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS--CCCCCCCCSSCC
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHH---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC--CCcCcccCCCcc
Confidence             156899999999999999999999   99999999999999997 67899999999997654332  223456789999


Q ss_pred             CccccccC-CcccccchhhhhhHHHHHhcCCCCcccccccccccc-------cchhhhhhhhhccchhhh-hhhhhhcCC
Q 044155          122 APEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVC-------PFSEYLKNCFEDNRFTEI-VDHIVVEDV  192 (239)
Q Consensus       122 aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~  192 (239)
                      |||.+.+. .++.++||||+|+++|+|++|..||...........       +..+.....  .....+. .........
T Consensus       209 aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~--~~~~~~~~~~~~~~~~~  286 (383)
T 3eb0_A          209 APELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRM--NPHYTEVRFPTLKAKDW  286 (383)
T ss_dssp             CHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHH--CTTC--CCCCCCCCCCH
T ss_pred             CHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHh--CcccccccCCccCcccH
Confidence            99998875 489999999999999999999999975432211110       000000000  0000000 000000000


Q ss_pred             CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH--HHHHH
Q 044155          193 SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK--KLRQI  232 (239)
Q Consensus       193 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~--~L~~l  232 (239)
                      ....+...+..+.+++.+||+.||.+|||+.|+++  +++++
T Consensus       287 ~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  328 (383)
T 3eb0_A          287 RKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHL  328 (383)
T ss_dssp             HHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHH
T ss_pred             HhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHH
Confidence            00001134567899999999999999999999985  44444

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=2.8e-37  Score=252.50  Aligned_cols=216  Identities=16%  Similarity=0.123  Sum_probs=148.5

Q ss_pred             CCCCcccceeeEEEEeC-----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~-----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++...     ...++||||+. ++|.+.+....    ..++...+..++.|++.||.|||   +.+++
T Consensus        85 ~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~iv  156 (362)
T 3pg1_A           85 HFHHPNILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR----IVISPQHIQYFMYHILLGLHVLH---EAGVV  156 (362)
T ss_dssp             HCCCTTBCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT----SCCCHHHHHHHHHHHHHHHHHHH---HTTCC
T ss_pred             hCCCcCccceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHH---HCcCE
Confidence            37899999999998643     24689999998 79989887643    46899999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+||||+||+++.++.++|+|||++.......  ......+++.|+|||++.+ ..++.++||||||+++|+|++|..||
T Consensus       157 H~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf  234 (362)
T 3pg1_A          157 HRDLHPGNILLADNNDITICDFNLAREDTADA--NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALF  234 (362)
T ss_dssp             CCCCCGGGEEECTTCCEEECCTTC-----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ecCCChHHEEEcCCCCEEEEecCccccccccc--ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCC
Confidence            99999999999999999999999986543221  2334568899999999877 67899999999999999999999998


Q ss_pred             cccccccccccc-------chhhhhhhhhccchhhhhhhhhhcCCC---cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 044155          155 DLVKDVHDLVCP-------FSEYLKNCFEDNRFTEIVDHIVVEDVS---SIEKEQQLHASAQVTFECIKDSPADRPSMVD  224 (239)
Q Consensus       155 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~cl~~dp~~Rps~~e  224 (239)
                      ............       .... ...+......+...........   .......++.+.+++.+||+.||.+|||+.|
T Consensus       235 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e  313 (362)
T 3pg1_A          235 RGSTFYNQLNKIVEVVGTPKIED-VVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQ  313 (362)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCHHH-HHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCHHHHHHHHHHHcCCCChHH-hhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHH
Confidence            653321110000       0000 0000000000000000000000   0011233567899999999999999999999


Q ss_pred             HHH
Q 044155          225 VAK  227 (239)
Q Consensus       225 ll~  227 (239)
                      +++
T Consensus       314 ll~  316 (362)
T 3pg1_A          314 ALR  316 (362)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            986

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=8.9e-37  Score=249.27  Aligned_cols=216  Identities=15%  Similarity=0.148  Sum_probs=151.6

Q ss_pred             CCCcccceeeEEEEeCCC-------ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            2 MSHNHILKLIGCCLETPI-------PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~-------~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      ++||||+++++++.....       .++||||++ ++|.+.+..... ....++...+..++.|++.||.|||.. +.++
T Consensus        76 l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~i  152 (360)
T 3e3p_A           76 LHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVP-DTLHRCCRNYYR-RQVAPPPILIKVFLFQLIRSIGCLHLP-SVNV  152 (360)
T ss_dssp             HCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCS-CBHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHTST-TTCC
T ss_pred             cCCCCcccHHHhhhccccccccceeEEEEeeccc-ccHHHHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHHhCC-CCCe
Confidence            589999999999976443       789999998 566655443111 015688999999999999999999943 5789


Q ss_pred             eeccccCcceeecC-CCceeEcccccccccCCCCcceeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCC
Q 044155           75 VFRNFKTSCILFNE-ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        75 ~H~dlk~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      +|+||||+||+++. ++.+||+|||++.......  ......||+.|+|||++.+.. ++.++||||||+++|+|++|..
T Consensus       153 vH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~  230 (360)
T 3e3p_A          153 CHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSE--PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEP  230 (360)
T ss_dssp             BCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTS--CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCC--CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence            99999999999997 8899999999987654332  223456899999999987654 8999999999999999999999


Q ss_pred             Ccccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCCCcHHH-------HHHHHHHHHHHhhhcCCCCCC
Q 044155          153 VSDLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEK-------EQQLHASAQVTFECIKDSPAD  218 (239)
Q Consensus       153 p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~li~~cl~~dp~~  218 (239)
                      ||...........       +..+.............     ..........       ...+..+.+++.+||+.||.+
T Consensus       231 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  305 (360)
T 3e3p_A          231 IFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVD-----LYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEE  305 (360)
T ss_dssp             SSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGG-----GGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGG
T ss_pred             CcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhcc-----ccccccCCcccccchhhccccHHHHHHHHHHhccCccc
Confidence            9975432211100       00000000000000000     0000000000       124577999999999999999


Q ss_pred             CCCHHHHHH
Q 044155          219 RPSMVDVAK  227 (239)
Q Consensus       219 Rps~~ell~  227 (239)
                      |||+.|+++
T Consensus       306 Rpt~~e~l~  314 (360)
T 3e3p_A          306 RMKPYEALC  314 (360)
T ss_dssp             SCCHHHHTT
T ss_pred             cCCHHHHhc
Confidence            999999986

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.5e-37  Score=256.64  Aligned_cols=197  Identities=19%  Similarity=0.217  Sum_probs=143.6

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +||||+++++++.+....++|||++. ++|.+++.....    ......+..++.|++.||.|||   +.+|+||||||+
T Consensus        76 ~HpnIv~l~~~~~~~~~~~lv~E~~~-g~L~~~l~~~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~  147 (432)
T 3p23_A           76 EHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQKDF----AHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPH  147 (432)
T ss_dssp             CCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHSSSC----CCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTT
T ss_pred             CCCCcCeEEEEEecCCEEEEEEECCC-CCHHHHHHhcCC----CccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHH
Confidence            79999999999999999999999997 799999987542    2344456689999999999999   899999999999


Q ss_pred             ceeecCC-----CceeEcccccccccCCCCc--ceeecccccccccCcccccc---CCcccccchhhhhhHHHHHhc-CC
Q 044155           83 CILFNEE-----NVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRT---GVFNEKSNVFSFSVFLFELLT-GW  151 (239)
Q Consensus        83 nil~~~~-----~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~~l~~~~~-g~  151 (239)
                      ||+++.+     ..++|+|||++........  .......||+.|+|||++.+   ..++.++|||||||++|+|++ |.
T Consensus       148 NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~  227 (432)
T 3p23_A          148 NILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGS  227 (432)
T ss_dssp             SEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSC
T ss_pred             HEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCC
Confidence            9999532     2578999999876543221  22344568999999999973   557789999999999999999 88


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .||......         ..........         .....  .....+..+.++|.+||+.||.+|||+.++++
T Consensus       228 ~pf~~~~~~---------~~~~~~~~~~---------~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          228 HPFGKSLQR---------QANILLGACS---------LDCLH--PEKHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             BTTBSTTTH---------HHHHHTTCCC---------CTTSC--TTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCcchhhHH---------HHHHHhccCC---------ccccC--ccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence            887432110         0000000000         00000  01134556789999999999999999999984

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=3.2e-38  Score=254.73  Aligned_cols=203  Identities=20%  Similarity=0.221  Sum_probs=136.5

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC-Ceeecccc
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR-PIVFRNFK   80 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~-~i~H~dlk   80 (239)
                      ++||||+++++++.+.+..++||||++ ++|.+++..........++...+..++.|++.||.|||   +. +++|+|||
T Consensus        78 ~~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlk  153 (327)
T 3aln_A           78 SDCPYIVQFYGALFREGDCWICMELMS-TSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIK  153 (327)
T ss_dssp             CCCTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCC
T ss_pred             CCCCcEeeeeeEEEeCCceEEEEeecC-CChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCC
Confidence            689999999999999999999999998 68888776311101156889999999999999999999   77 99999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccc----ccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYM----RTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~----~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+||+++.++.+||+|||++.......  ......|++.|+|||++    .+..++.++||||||+++|+|++|..||..
T Consensus       154 p~NIll~~~~~~kl~Dfg~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  231 (327)
T 3aln_A          154 PSNILLDRSGNIKLCDFGISGQLVDSI--AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPK  231 (327)
T ss_dssp             GGGEEEETTTEEEECCCSSSCC--------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSC
T ss_pred             HHHEEEcCCCCEEEccCCCceeccccc--ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            999999999999999999987653322  12234689999999998    455688999999999999999999999864


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .........       ..... ..         ...........+..+.+++.+||+.||.+|||+.++++
T Consensus       232 ~~~~~~~~~-------~~~~~-~~---------~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          232 WNSVFDQLT-------QVVKG-DP---------PQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK  285 (327)
T ss_dssp             C-------C-------CCCCS-CC---------CCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             cchHHHHHH-------HHhcC-CC---------CCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence            322111100       00000 00         00000000123467889999999999999999999986

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=4.8e-37  Score=252.04  Aligned_cols=210  Identities=17%  Similarity=0.211  Sum_probs=151.1

Q ss_pred             CCCcccceeeEEEEeCCCc------eEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            2 MSHNHILKLIGCCLETPIP------ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~------~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      ++||||+++++++......      ++||||+. ++|.+.+.       ..++...+..++.|++.||.|||   +.+++
T Consensus        98 l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~i~~qi~~aL~~LH---~~~iv  166 (371)
T 4exu_A           98 MQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMG-------MEFSEEKIQYLVYQMLKGLKYIH---SAGVV  166 (371)
T ss_dssp             CCCTTBCCCSEEECSCSSSTTCCCCEEEEECCC-EEHHHHTT-------SCCCHHHHHHHHHHHHHHHHHHH---HTTCC
T ss_pred             cCCCCchhhhhheeccCCcccceeEEEEEcccc-ccHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHH---HCCCc
Confidence            6899999999999876654      99999997 79988774       45889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+||||+||+++.++.+||+|||++......    .....+|+.|+|||++.+ ..++.++||||||+++|+|++|..||
T Consensus       167 H~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf  242 (371)
T 4exu_A          167 HRDLKPGNLAVNEDCELKILDFGLARHADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLF  242 (371)
T ss_dssp             CSCCCGGGEEECTTCCEEECSTTCC------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred             CCCcCHHHeEECCCCCEEEEecCcccccccC----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999998654322    234568999999999887 67899999999999999999999999


Q ss_pred             cccccccccccc-------chhhhhhhhhccchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 044155          155 DLVKDVHDLVCP-------FSEYLKNCFEDNRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKDSPADRPSMVDV  225 (239)
Q Consensus       155 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~~el  225 (239)
                      ............       ..++.. ......................  .....++.+.++|.+||+.||.+|||++|+
T Consensus       243 ~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el  321 (371)
T 4exu_A          243 KGKDYLDQLTQILKVTGVPGTEFVQ-KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQA  321 (371)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCHHHHT-TCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred             CCCChHHHHHHHHHHhCCCcHHHHH-HhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHH
Confidence            754321111000       000000 0000000000000000010100  111346788999999999999999999999


Q ss_pred             HH
Q 044155          226 AK  227 (239)
Q Consensus       226 l~  227 (239)
                      ++
T Consensus       322 l~  323 (371)
T 4exu_A          322 LT  323 (371)
T ss_dssp             HT
T ss_pred             hc
Confidence            86

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=6.8e-37  Score=254.93  Aligned_cols=214  Identities=19%  Similarity=0.215  Sum_probs=151.4

Q ss_pred             CCCCcccceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +|+||||+++++++....      ..++||||++ ++|.+.+..... ....++...+..++.||+.||.|||   +.+|
T Consensus       103 ~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~-~~~~l~~~~~~~~~~qi~~aL~~LH---~~~i  177 (420)
T 1j1b_A          103 KLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVP-ETVYRVARHYSR-AKQTLPVIYVKLYMYQLFRSLAYIH---SFGI  177 (420)
T ss_dssp             TCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCC-EEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHH---TTTE
T ss_pred             HcCCCCccceeeEEeccCCCCcceeEEeehhccc-ccHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHH---HCCc
Confidence            478999999999986432      2568999998 577776653110 0156899999999999999999999   9999


Q ss_pred             eeccccCcceeecCC-CceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCC
Q 044155           75 VFRNFKTSCILFNEE-NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        75 ~H~dlk~~nil~~~~-~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      +||||||+|||++.+ +.+||+|||+++......  ......+|+.|+|||++.+. .++.++|||||||++|||++|+.
T Consensus       178 vHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~  255 (420)
T 1j1b_A          178 CHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE--PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP  255 (420)
T ss_dssp             ECSCCSGGGEEEETTTTEEEECCCTTCEECCTTC--CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             cccCCChhhEEEeCCCCeEEeccchhhhhcccCC--CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCC
Confidence            999999999999965 568999999997654332  12345689999999998765 68999999999999999999999


Q ss_pred             Ccccccccccccccchhhhhhhhhccchhhhhhhhh--------hcCC-CcH---HHHHHHHHHHHHHhhhcCCCCCCCC
Q 044155          153 VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIV--------VEDV-SSI---EKEQQLHASAQVTFECIKDSPADRP  220 (239)
Q Consensus       153 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~---~~~~~~~~~~~li~~cl~~dp~~Rp  220 (239)
                      ||...........    ..+.. .... .+.+....        .... ...   .....+..+.+||.+||..||.+||
T Consensus       256 pf~~~~~~~~l~~----i~~~l-g~p~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~  329 (420)
T 1j1b_A          256 IFPGDSGVDQLVE----IIKVL-GTPT-REQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARL  329 (420)
T ss_dssp             SSCCSSHHHHHHH----HHHHH-CSCC-HHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSC
T ss_pred             CCCCCCHHHHHHH----HHHHh-CCCC-HHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCC
Confidence            9975432211110    00000 0000 00000000        0000 000   0012356789999999999999999


Q ss_pred             CHHHHHH
Q 044155          221 SMVDVAK  227 (239)
Q Consensus       221 s~~ell~  227 (239)
                      |+.|+++
T Consensus       330 t~~e~l~  336 (420)
T 1j1b_A          330 TPLEACA  336 (420)
T ss_dssp             CHHHHHT
T ss_pred             CHHHHhC
Confidence            9999985

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=3.1e-37  Score=251.36  Aligned_cols=217  Identities=20%  Similarity=0.222  Sum_probs=153.9

Q ss_pred             CCCCcccceeeEEEEeC-----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~-----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++...     ...++||||+. ++|.+++..      ..++...+..++.|++.||.|||   +.+++
T Consensus        65 ~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~------~~~~~~~~~~~~~qi~~~L~~LH---~~~iv  134 (353)
T 2b9h_A           65 HFKHENIITIFNIQRPDSFENFNEVYIIQELMQ-TDLHRVIST------QMLSDDHIQYFIYQTLRAVKVLH---GSNVI  134 (353)
T ss_dssp             HCCCTTBCCEEEECCCSCSTTCCCEEEEECCCS-EEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred             hCcCCCcCCeeeeecccccCccceEEEEEeccC-ccHHHHHhh------cCCCHHHHHHHHHHHHHHHHHHH---HCCee
Confidence            36899999999998754     56799999997 799999876      45889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcc---------eeecccccccccCcccccc-CCcccccchhhhhhHHH
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETH---------ITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLF  145 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~---------~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~  145 (239)
                      |+||||+||+++.++.++|+|||++.........         ......|++.|+|||++.. ..++.++||||||+++|
T Consensus       135 H~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~  214 (353)
T 2b9h_A          135 HRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILA  214 (353)
T ss_dssp             CSCCCGGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHH
T ss_pred             cCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHH
Confidence            9999999999999999999999998765422111         1223467999999998765 67899999999999999


Q ss_pred             HHhcCCCCcccccccccccccch-------hhhhhhhhccchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCCCC
Q 044155          146 ELLTGWDVSDLVKDVHDLVCPFS-------EYLKNCFEDNRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKDSP  216 (239)
Q Consensus       146 ~~~~g~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~dp  216 (239)
                      +|++|..||..............       .............+.............  .....++.+.+++.+||+.||
T Consensus       215 ~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  294 (353)
T 2b9h_A          215 ELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDP  294 (353)
T ss_dssp             HHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSG
T ss_pred             HHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCc
Confidence            99999999875432111000000       000000000000000000000000000  112346778999999999999


Q ss_pred             CCCCCHHHHHH
Q 044155          217 ADRPSMVDVAK  227 (239)
Q Consensus       217 ~~Rps~~ell~  227 (239)
                      .+|||+.|+++
T Consensus       295 ~~Rpt~~ell~  305 (353)
T 2b9h_A          295 AKRITAKEALE  305 (353)
T ss_dssp             GGSCCHHHHHT
T ss_pred             ccCCCHHHHhc
Confidence            99999999986

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=3.9e-37  Score=246.94  Aligned_cols=194  Identities=19%  Similarity=0.265  Sum_probs=145.6

Q ss_pred             CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcc
Q 044155            4 HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSC   83 (239)
Q Consensus         4 H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~n   83 (239)
                      ||||+++++++.+....++||| +.+++|.+++...     ..++...+..++.|++.||.|||   +.+++|+||||+|
T Consensus        87 ~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~N  157 (313)
T 3cek_A           87 SDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK-----KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPAN  157 (313)
T ss_dssp             CTTBCCEEEEEECSSEEEEEEC-CCSEEHHHHHHHC-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGG
T ss_pred             CCceEEEEEEeecCCEEEEEEe-cCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCccc
Confidence            6999999999999999999999 4569999999875     56889999999999999999999   8999999999999


Q ss_pred             eeecCCCceeEcccccccccCCCCc-ceeecccccccccCcccccc-----------CCcccccchhhhhhHHHHHhcCC
Q 044155           84 ILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRT-----------GVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        84 il~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~-----------~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      |++++ +.+||+|||++........ .......|++.|+|||.+.+           ..++.++||||||+++|+|++|.
T Consensus       158 Il~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~  236 (313)
T 3cek_A          158 FLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK  236 (313)
T ss_dssp             EEEET-TEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSS
T ss_pred             EEEEC-CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCC
Confidence            99964 7899999999876533221 12234568999999999875           46788999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .||.......                    ...............+...+..+.+++.+||+.||.+|||+.|+++
T Consensus       237 ~pf~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  292 (313)
T 3cek_A          237 TPFQQIINQI--------------------SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  292 (313)
T ss_dssp             CTTTTCCSHH--------------------HHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CchhhHHHHH--------------------HHHHHHHhcccccCCcccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence            9985432110                    0000011100000000122456889999999999999999999986

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=4.2e-36  Score=244.53  Aligned_cols=213  Identities=17%  Similarity=0.230  Sum_probs=154.1

Q ss_pred             CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcc
Q 044155            4 HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSC   83 (239)
Q Consensus         4 H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~n   83 (239)
                      |.+++.+++++...+..++||||+ ++++.+.+.....   ..++...+..++.|++.||.|||   +++++|+||||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~---~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~N  153 (355)
T 2eu9_A           81 KFLCVLMSDWFNFHGHMCIAFELL-GKNTFEFLKENNF---QPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPEN  153 (355)
T ss_dssp             CSCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGG
T ss_pred             ceeEEEeeeeeeeCCeEEEEEecc-CCChHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHH
Confidence            445999999999999999999999 4788888876533   46899999999999999999999   9999999999999


Q ss_pred             eee-------------------cCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHH
Q 044155           84 ILF-------------------NEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFL  144 (239)
Q Consensus        84 il~-------------------~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l  144 (239)
                      |++                   +.++.+||+|||++......    .....||+.|+|||++.+..++.++||||||+++
T Consensus       154 Ill~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il  229 (355)
T 2eu9_A          154 ILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEH----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCIL  229 (355)
T ss_dssp             EEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHH
T ss_pred             EEEecccccccccccccccccccCCCcEEEeecCcccccccc----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHH
Confidence            999                   56788999999998764322    2345689999999999988999999999999999


Q ss_pred             HHHhcCCCCcccccccccc------cccchhhhhhhhhccc--------hhh------hhhhhhhc-CCCcHHHHHHHHH
Q 044155          145 FELLTGWDVSDLVKDVHDL------VCPFSEYLKNCFEDNR--------FTE------IVDHIVVE-DVSSIEKEQQLHA  203 (239)
Q Consensus       145 ~~~~~g~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~--------~~~------~~~~~~~~-~~~~~~~~~~~~~  203 (239)
                      |+|++|..||.........      ..+.+...........        +..      ........ ..........+..
T Consensus       230 ~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (355)
T 2eu9_A          230 FEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQ  309 (355)
T ss_dssp             HHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHH
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHH
Confidence            9999999999754332111      0000000000000000        000      00000000 0000001234568


Q ss_pred             HHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          204 SAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       204 ~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      +.+++.+||+.||.+|||+.|+++
T Consensus       310 l~~li~~~L~~dP~~Rpt~~e~l~  333 (355)
T 2eu9_A          310 LFDLMRRMLEFDPAQRITLAEALL  333 (355)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             HHHHHHHHhcCChhhCcCHHHHhc
Confidence            899999999999999999999985

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=4.8e-37  Score=247.27  Aligned_cols=185  Identities=18%  Similarity=0.314  Sum_probs=152.4

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccC-CChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQY-GTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~-~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .||||+++++++.+.+..++|+|++.+ ++|.+++...     ..++...+..++.|++.||.|||   +.+++|+||||
T Consensus       106 ~~~~i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~-----~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp  177 (320)
T 3a99_A          106 GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITER-----GALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKD  177 (320)
T ss_dssp             SSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred             CCCCceEEEEEEecCCcEEEEEEcCCCCccHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCH
Confidence            479999999999999999999999976 8999999865     56889999999999999999999   89999999999


Q ss_pred             cceeec-CCCceeEcccccccccCCCCcceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           82 SCILFN-EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        82 ~nil~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      +||+++ .++.+||+|||++.......   .....|++.|+|||++.+..+ +.++||||||+++|+|++|..||.....
T Consensus       178 ~NIll~~~~~~~kL~Dfg~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~  254 (320)
T 3a99_A          178 ENILIDLNRGELKLIDFGSGALLKDTV---YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE  254 (320)
T ss_dssp             GGEEEETTTTEEEECCCTTCEECCSSC---BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH
T ss_pred             HHEEEeCCCCCEEEeeCcccccccccc---ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh
Confidence            999999 77899999999987654322   234568999999999887665 6889999999999999999999853221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                       ......  .    ....+..+.++|.+||+.||.+|||++|+++
T Consensus       255 ~-----------------------~~~~~~--~----~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          255 I-----------------------IRGQVF--F----RQRVSSECQHLIRWCLALRPSDRPTFEEIQN  293 (320)
T ss_dssp             H-----------------------HHCCCC--C----SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             h-----------------------hccccc--c----cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            0                       000000  0    0123456889999999999999999999986

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=6e-37  Score=245.71  Aligned_cols=185  Identities=21%  Similarity=0.331  Sum_probs=148.7

Q ss_pred             CCcccceeeEEEEeCCCceEEEEE-ccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            3 SHNHILKLIGCCLETPIPILVFES-VQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~-~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      +||||+++++++...+..++|+|+ +.+++|.+++...     ..+++..+..++.|++.||.|||   +.+++|+||||
T Consensus        96 ~h~~i~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp  167 (312)
T 2iwi_A           96 GHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEK-----GPLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKD  167 (312)
T ss_dssp             CCSSBCCEEEEC-----CEEEEECCSSEEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSG
T ss_pred             CCCCeeeEEEEEecCCeEEEEEEecCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCh
Confidence            899999999999999999999999 7889999999875     56899999999999999999999   89999999999


Q ss_pred             cceeec-CCCceeEcccccccccCCCCcceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           82 SCILFN-EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        82 ~nil~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      +||+++ .++.++|+|||++.......   .....++..|+|||.+.+..+ +.++||||||+++|+|++|..||.....
T Consensus       168 ~Nil~~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  244 (312)
T 2iwi_A          168 ENILIDLRRGCAKLIDFGSGALLHDEP---YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQE  244 (312)
T ss_dssp             GGEEEETTTTEEEECCCSSCEECCSSC---BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH
T ss_pred             hhEEEeCCCCeEEEEEcchhhhcccCc---ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHH
Confidence            999999 78899999999987654322   234568999999999887665 4589999999999999999999853211


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                       .....  ..    ....+..+.++|.+||+.||.+|||++|+++
T Consensus       245 ~-----------------------~~~~~--~~----~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~  283 (312)
T 2iwi_A          245 I-----------------------LEAEL--HF----PAHVSPDCCALIRRCLAPKPSSRPSLEEILL  283 (312)
T ss_dssp             H-----------------------HHTCC--CC----CTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             H-----------------------hhhcc--CC----cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            0                       00000  00    0133456889999999999999999999987

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=243.59  Aligned_cols=215  Identities=17%  Similarity=0.224  Sum_probs=152.2

Q ss_pred             CCCCcccceeeEEEE--------------eCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHH
Q 044155            1 QMSHNHILKLIGCCL--------------ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYL   66 (239)
Q Consensus         1 ~l~H~niv~l~~~~~--------------~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~L   66 (239)
                      +++||||+++++++.              +....++||||++ ++|.+++..      ..++...+..++.|++.||+||
T Consensus        64 ~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~l  136 (320)
T 2i6l_A           64 RLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME-TDLANVLEQ------GPLLEEHARLFMYQLLRGLKYI  136 (320)
T ss_dssp             TCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCS-EEHHHHHTT------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCeeEEEEeccccccccccccccccccCceeEEeeccC-CCHHHHhhc------CCccHHHHHHHHHHHHHHHHHH
Confidence            478999999999874              3356789999998 799999864      4588999999999999999999


Q ss_pred             hhCCCCCeeeccccCcceeec-CCCceeEcccccccccCCCC--cceeecccccccccCcccccc-CCcccccchhhhhh
Q 044155           67 HFGFPRPIVFRNFKTSCILFN-EENVAKLFDFSLSISIPEGE--THITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSV  142 (239)
Q Consensus        67 H~~~~~~i~H~dlk~~nil~~-~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~  142 (239)
                      |   +.+++|+||||+||+++ .++.+||+|||++.......  ........++..|+|||.+.. ..++.++||||||+
T Consensus       137 H---~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~  213 (320)
T 2i6l_A          137 H---SANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGC  213 (320)
T ss_dssp             H---HTTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHH
T ss_pred             H---hCCEecCCCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHH
Confidence            9   89999999999999997 56689999999987653221  112234557889999998865 67899999999999


Q ss_pred             HHHHHhcCCCCcccccccccccccc-------hhhhhhhhhccchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcC
Q 044155          143 FLFELLTGWDVSDLVKDVHDLVCPF-------SEYLKNCFEDNRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIK  213 (239)
Q Consensus       143 ~l~~~~~g~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~  213 (239)
                      ++|+|++|..||.............       .........  .................  .....+..+.++|.+||+
T Consensus       214 il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  291 (320)
T 2i6l_A          214 IFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLS--VIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILT  291 (320)
T ss_dssp             HHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHT--TSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSC
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhh--cCcccccccccCCCCChhHhcchhhHHHHHHHHHHcC
Confidence            9999999999997543211110000       000000000  00000000111111111  111346789999999999


Q ss_pred             CCCCCCCCHHHHHH
Q 044155          214 DSPADRPSMVDVAK  227 (239)
Q Consensus       214 ~dp~~Rps~~ell~  227 (239)
                      .||.+|||++|+++
T Consensus       292 ~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          292 FSPMDRLTAEEALS  305 (320)
T ss_dssp             SSGGGSCCHHHHHT
T ss_pred             CCccccCCHHHHhC
Confidence            99999999999986

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=248.26  Aligned_cols=210  Identities=17%  Similarity=0.222  Sum_probs=149.8

Q ss_pred             CCCcccceeeEEEEeCCC------ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            2 MSHNHILKLIGCCLETPI------PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~------~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      ++||||+++++++.....      .++||||+. ++|.+++.       ..++...+..++.|++.||.|||   +++++
T Consensus        80 l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~i~~qi~~al~~LH---~~~iv  148 (353)
T 3coi_A           80 MQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMG-------LKFSEEKIQYLVYQMLKGLKYIH---SAGVV  148 (353)
T ss_dssp             CCCTTBCCCSEEECSCSSGGGCCCCEEEEECCS-EEGGGTTT-------SCCCHHHHHHHHHHHHHHHHHHH---HTTCC
T ss_pred             cCCCCcccHhheEecccccccceeEEEEecccc-CCHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHH---HCCcc
Confidence            689999999999987654      499999997 79988774       34889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |+||||+||+++.++.+||+|||++......    .....+++.|+|||.+.+ ..++.++||||||+++|+|++|..||
T Consensus       149 H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf  224 (353)
T 3coi_A          149 HRDLKPGNLAVNEDCELKILDFGLARHADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLF  224 (353)
T ss_dssp             CSSCCGGGEEECTTCCEEECSTTCTTC------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred             cCCCCHHHEeECCCCcEEEeecccccCCCCC----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999998654322    234567999999999887 67899999999999999999999999


Q ss_pred             ccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 044155          155 DLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDV  225 (239)
Q Consensus       155 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~el  225 (239)
                      ...........       +..++... ..................  ........+..+.+++.+||+.||.+|||++++
T Consensus       225 ~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~  303 (353)
T 3coi_A          225 KGKDYLDQLTQILKVTGVPGTEFVQK-LNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQA  303 (353)
T ss_dssp             BSSCHHHHHHHHHHHHCBCCHHHHTT-CSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred             CCCCHHHHHHHHHHHhCCCCHHHHHH-HhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHH
Confidence            75432111000       00000000 000000000000000000  000012346778999999999999999999999


Q ss_pred             HH
Q 044155          226 AK  227 (239)
Q Consensus       226 l~  227 (239)
                      ++
T Consensus       304 l~  305 (353)
T 3coi_A          304 LT  305 (353)
T ss_dssp             HT
T ss_pred             hc
Confidence            85

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=6.9e-37  Score=245.77  Aligned_cols=196  Identities=21%  Similarity=0.269  Sum_probs=143.8

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC-Ceeecccc
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR-PIVFRNFK   80 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~-~i~H~dlk   80 (239)
                      ++||||+++++++.+....++||||+ ++.+..+.....    ..++...+..++.|++.||.|||   .. +++|+|||
T Consensus        81 ~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~~~~l~~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlk  152 (318)
T 2dyl_A           81 HDCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLKKRMQ----GPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVK  152 (318)
T ss_dssp             TTCTTBCCEEEEEECSSEEEEEECCC-SEEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCC
T ss_pred             cCCCceeeEEEEEecCCcEEEEEecc-CCcHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCC
Confidence            68999999999999999999999999 466666554322    56889999999999999999999   75 99999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc-----cCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |+||+++.++.++|+|||++.......  ......+++.|+|||.+.     ...++.++||||||+++|+|++|..||.
T Consensus       153 p~Nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  230 (318)
T 2dyl_A          153 PSNILLDERGQIKLCDFGISGRLVDDK--AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYK  230 (318)
T ss_dssp             GGGEEECTTSCEEECCCTTC----------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             HHHEEECCCCCEEEEECCCchhccCCc--cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCC
Confidence            999999999999999999986553322  123446899999999985     4567889999999999999999999986


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCC-cHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS-SIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .....                    .+........... .......+..+.+++.+||+.||.+|||++++++
T Consensus       231 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          231 NCKTD--------------------FEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             TCCSH--------------------HHHHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CCCcc--------------------HHHHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            42211                    0111111111100 0000124567889999999999999999999987

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=2.6e-36  Score=260.91  Aligned_cols=219  Identities=18%  Similarity=0.183  Sum_probs=154.1

Q ss_pred             CCCCcccceeeEEEEe------CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLE------TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~------~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||+++++++..      ++..++||||+++++|.+++......  ..+++..+..++.|++.||.|||   +.++
T Consensus        68 ~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~--~~lse~~i~~I~~QLl~aL~yLH---s~gI  142 (676)
T 3qa8_A           68 KLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENC--CGLKEGPIRTLLSDISSALRYLH---ENRI  142 (676)
T ss_dssp             HCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCT--TCCCSSHHHHHHHHHHHHHHHHH---HTTB
T ss_pred             hCCCCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccC--CCCCHHHHHHHHHHHHHHHHHHH---HCCC
Confidence            3689999999998765      66779999999999999999875321  35888899999999999999999   8999


Q ss_pred             eeccccCcceeecCCCc---eeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCC
Q 044155           75 VFRNFKTSCILFNEENV---AKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~---~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      +|+||||+||+++.++.   ++|+|||.+.......  ......|++.|+|||.+.+..++.++||||||+++|++++|.
T Consensus       143 VHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~--~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~  220 (676)
T 3qa8_A          143 IHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGE--LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGF  220 (676)
T ss_dssp             CCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCC--CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSC
T ss_pred             ccCCCCHHHeEeecCCCceeEEEccccccccccccc--ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCC
Confidence            99999999999997764   8999999987654332  223456899999999999999999999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhh-hhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNC-FEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                      .||.................... ..........................+..+.+++.+||..||.+|||+.+++
T Consensus       221 ~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL  296 (676)
T 3qa8_A          221 RPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP  296 (676)
T ss_dssp             SSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred             CCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence            99865322111100000000000 0000000000000000000011124667899999999999999999998844

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.7e-35  Score=260.04  Aligned_cols=189  Identities=21%  Similarity=0.275  Sum_probs=149.7

Q ss_pred             CCCCcccceeeEEEEeCCC-----ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLETPI-----PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~-----~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++||||+++++++...+.     .++||||+++++|.+++.       ..+++..+..++.||+.||.|||   +++|+
T Consensus       135 ~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~-------~~l~~~~~~~~~~qi~~aL~~lH---~~gii  204 (681)
T 2pzi_A          135 EVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKG-------QKLPVAEAIAYLLEILPALSYLH---SIGLV  204 (681)
T ss_dssp             GCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC-----------CCCCHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred             hcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHH---HCCCe
Confidence            4789999999999987765     699999999999988764       35889999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      ||||||+||+++.+ .+||+|||++......     ....||+.|+|||++.+.. +.++||||||+++|+|++|..|+.
T Consensus       205 HrDlkp~NIll~~~-~~kl~DFG~a~~~~~~-----~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~  277 (681)
T 2pzi_A          205 YNDLKPENIMLTEE-QLKLIDLGAVSRINSF-----GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRN  277 (681)
T ss_dssp             CCCCSGGGEEECSS-CEEECCCTTCEETTCC-----SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEET
T ss_pred             ecccChHHeEEeCC-cEEEEecccchhcccC-----CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCc
Confidence            99999999999886 8999999998765432     3456899999999987654 889999999999999999987764


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-CHHHHHHHHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-SMVDVAKKLRQIYR  234 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-s~~ell~~L~~l~~  234 (239)
                      .....                  ...           ........++.+.++|.+||+.||.+|| +++++...|..+..
T Consensus       278 ~~~~~------------------~~~-----------~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~  328 (681)
T 2pzi_A          278 GRYVD------------------GLP-----------EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLR  328 (681)
T ss_dssp             TEECS------------------SCC-----------TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHH
T ss_pred             ccccc------------------ccc-----------ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHH
Confidence            31100                  000           0001113446788999999999999999 57777777777654


Q ss_pred             h
Q 044155          235 S  235 (239)
Q Consensus       235 ~  235 (239)
                      .
T Consensus       329 ~  329 (681)
T 2pzi_A          329 E  329 (681)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=2.9e-35  Score=234.66  Aligned_cols=180  Identities=18%  Similarity=0.303  Sum_probs=139.8

Q ss_pred             CCCcccceeeEEEEe----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeec
Q 044155            2 MSHNHILKLIGCCLE----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFR   77 (239)
Q Consensus         2 l~H~niv~l~~~~~~----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~   77 (239)
                      ++||||+++++++..    ....++||||+++++|.+++.....   ..++...+..++.|++.||.|||   +.+++|+
T Consensus        68 ~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~  141 (299)
T 3m2w_A           68 SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGD---QAFTEREASEIMKSIGEAIQYLH---SINIAHR  141 (299)
T ss_dssp             TTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTT---CCCBHHHHHHHHHHHHHHHHHHH---HTTEECC
T ss_pred             ccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccC
Confidence            489999999999987    6678999999999999999987543   46899999999999999999999   8999999


Q ss_pred             cccCcceeecC---CCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           78 NFKTSCILFNE---ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        78 dlk~~nil~~~---~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      ||||+||+++.   ++.++|+|||++....                       +..++.++||||||+++|+|++|..||
T Consensus       142 dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~-----------------------~~~~~~~~DiwslG~il~el~tg~~pf  198 (299)
T 3m2w_A          142 DVKPENLLYTSKRPNAILKLTDFGFAKETT-----------------------GEKYDKSCDMWSLGVIMYILLCGYPPF  198 (299)
T ss_dssp             CCSGGGEEESSSSTTCCEEECCCTTCEECT-----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSC
T ss_pred             CCCHHHEEEecCCCCCcEEEeccccccccc-----------------------cccCCchhhHHHHHHHHHHHHHCCCCC
Confidence            99999999998   7889999999875432                       134678999999999999999999998


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhc--CCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVE--DVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...........                 ........  ..........+..+.+++.+||+.||.+|||+.|+++
T Consensus       199 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~  256 (299)
T 3m2w_A          199 YSNHGLAISPG-----------------MKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  256 (299)
T ss_dssp             CC-------CC-----------------SCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCCcchhhhHH-----------------HHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            64332111000                 00000000  0111111245677899999999999999999999987

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=1.2e-34  Score=229.80  Aligned_cols=178  Identities=10%  Similarity=-0.003  Sum_probs=138.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++++|.++++..       ........++.|++.||.|||   +++++|+|||
T Consensus        87 ~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-------~~~~~~~~i~~ql~~aL~~lH---~~givH~Dik  156 (286)
T 3uqc_A           87 RIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTS-------PSPVGAIRAMQSLAAAADAAH---RAGVALSIDH  156 (286)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEEECCCEEEHHHHHTTC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCS
T ss_pred             cCCCCCcceeeEEEEECCcEEEEEEecCCCCHHHHHhcC-------CChHHHHHHHHHHHHHHHHHH---HCCCccCCCC
Confidence            479999999999999999999999999999999999542       245567889999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+||+++.++.++|++++.                     ++       .++.++||||||+++|+|++|..||......
T Consensus       157 p~NIll~~~g~~kl~~~~~---------------------~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~  208 (286)
T 3uqc_A          157 PSRVRVSIDGDVVLAYPAT---------------------MP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVR  208 (286)
T ss_dssp             GGGEEEETTSCEEECSCCC---------------------CT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBC
T ss_pred             cccEEEcCCCCEEEEeccc---------------------cC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcc
Confidence            9999999999999885432                     22       3678999999999999999999998754432


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCc--HHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSS--IEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      .........                  .......  ......++.+.+++.+||+.||.+| |+.|+++.|+++...
T Consensus       209 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~  266 (286)
T 3uqc_A          209 SGLAPAERD------------------TAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAV  266 (286)
T ss_dssp             CCSEECCBC------------------TTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC-
T ss_pred             hhhHHHHHH------------------hccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhcc
Confidence            211100000                  0000000  0112345678999999999999999 999999999987654

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=1.5e-33  Score=228.28  Aligned_cols=174  Identities=11%  Similarity=0.051  Sum_probs=131.7

Q ss_pred             CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCC------
Q 044155           17 TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEEN------   90 (239)
Q Consensus        17 ~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~------   90 (239)
                      ....++||||+++|++.+.+.+      ..+++..++.++.|++.||.|||.  +++|+||||||+|||++.++      
T Consensus       134 ~~~~~lv~E~~~~g~ll~~~~~------~~~~~~~~~~i~~qi~~aL~~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~  205 (336)
T 2vuw_A          134 DDQLFIVLEFEFGGIDLEQMRT------KLSSLATAKSILHQLTASLAVAEA--SLRFEHRDLHWGNVLLKKTSLKKLHY  205 (336)
T ss_dssp             TTCEEEEEEEECCCEETGGGTT------TCCCHHHHHHHHHHHHHHHHHHHH--HHCCBCSCCCGGGEEEEECSCSEEEE
T ss_pred             cCeEEEEEEecCCCccHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHH--hCCEeECCCCHHHEEEeccCCcceee
Confidence            6788999999999977776643      457899999999999999999993  37999999999999999887      


Q ss_pred             --------------ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhH-HHHHhcCCCCcc
Q 044155           91 --------------VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVF-LFELLTGWDVSD  155 (239)
Q Consensus        91 --------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~-l~~~~~g~~p~~  155 (239)
                                    .+||+|||+++.....      ...||+.|+|||++.+.. +.++||||++++ .+++++|..||.
T Consensus       206 ~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~  278 (336)
T 2vuw_A          206 TLNGKSSTIPSCGLQVSIIDYTLSRLERDG------IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYS  278 (336)
T ss_dssp             EETTEEEEEECTTEEEEECCCTTCBEEETT------EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred             eccCccccccCCCceEEEeeccccEecCCC------cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCc
Confidence                          8999999999765432      346899999999998766 889999998776 778899988763


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhh-hhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHI-VVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVA  226 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell  226 (239)
                      ...                +............ .............++++.+||.+||++|     |++|++
T Consensus       279 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d-----sa~e~l  329 (336)
T 2vuw_A          279 NVL----------------WLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS-----SATDLL  329 (336)
T ss_dssp             HHH----------------HHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS-----SHHHHH
T ss_pred             chh----------------hhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC-----CHHHHH
Confidence            210                0000000111110 1112223345578899999999999977     999887

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=7.8e-34  Score=236.00  Aligned_cols=173  Identities=11%  Similarity=0.120  Sum_probs=131.8

Q ss_pred             CceEEEEEccCCChhhhhhcCC--CCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcc
Q 044155           19 IPILVFESVQYGTLWDRILGAP--QPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFD   96 (239)
Q Consensus        19 ~~~iv~e~~~~~sL~~~l~~~~--~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~d   96 (239)
                      ..+++|+.+ +++|.+++....  ......+++..+..++.|++.||+|||   +++|+||||||+|||++.++.+||+|
T Consensus       179 ~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~iiHrDiKp~NILl~~~~~~kL~D  254 (413)
T 3dzo_A          179 SRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTG  254 (413)
T ss_dssp             SEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECC
T ss_pred             ceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcccceEEEecCCeEEEEe
Confidence            456777777 489999885210  001156778899999999999999999   89999999999999999999999999


Q ss_pred             cccccccCCCCcceeecccccccccCcccc----------ccCCcccccchhhhhhHHHHHhcCCCCccccccccccccc
Q 044155           97 FSLSISIPEGETHITDTVMGTLGYCAPEYM----------RTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCP  166 (239)
Q Consensus        97 fg~~~~~~~~~~~~~~~~~~~~~y~aPE~~----------~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~~~~~~  166 (239)
                      ||++......    .....| +.|+|||++          ....++.++||||||+++|+|++|+.||........    
T Consensus       255 FG~a~~~~~~----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~----  325 (413)
T 3dzo_A          255 FEHLVRDGAS----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGG----  325 (413)
T ss_dssp             GGGCEETTEE----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSC----
T ss_pred             ccceeecCCc----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhh----
Confidence            9998654322    334557 899999999          555688899999999999999999999864332111    


Q ss_pred             chhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          167 FSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                       .........      ..++.+.++|.+||+.||.+|||+.++++
T Consensus       326 -----------------~~~~~~~~~------~~~~~~~~li~~~l~~dP~~Rpt~~~~l~  363 (413)
T 3dzo_A          326 -----------------SEWIFRSCK------NIPQPVRALLEGFLRYPKEDRLLPLQAME  363 (413)
T ss_dssp             -----------------SGGGGSSCC------CCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             -----------------HHHHHhhcc------cCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence                             111111111      22356899999999999999999888865

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.97  E-value=2.1e-31  Score=229.00  Aligned_cols=138  Identities=16%  Similarity=0.150  Sum_probs=104.2

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .|+||+++++++++++..||||||++|++|.+++...     .+++..   +++.||+.||+|+|   ++||+||||||+
T Consensus       300 ~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~-----~~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPe  368 (569)
T 4azs_A          300 AGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAG-----EEIDRE---KILGSLLRSLAALE---KQGFWHDDVRPW  368 (569)
T ss_dssp             TTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTT-----CCCCHH---HHHHHHHHHHHHHH---HTTCEESCCCGG
T ss_pred             CCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhC-----CCCCHH---HHHHHHHHHHHHHH---HCCceeccCchH
Confidence            7999999999999999999999999999999999875     456554   47899999999999   999999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCC
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      |||++.++.+||+|||+++...... .......||+.|+|||++.+ ....++|+||+|++.+++.++..+
T Consensus       369 NILL~~dg~vKL~DFGlAr~~~~~~-~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          369 NVMVDARQHARLIDFGSIVTTPQDC-SWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             GEEECTTSCEEECCCTTEESCC----CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred             hEEECCCCCEEEeecccCeeCCCCC-ccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence            9999999999999999997654322 23445679999999999875 456789999999999988776544

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.89  E-value=1.3e-24  Score=185.88  Aligned_cols=136  Identities=15%  Similarity=0.101  Sum_probs=113.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++..++......++||||+++++|.+++..             +..++.|++.||.|||   +++|+|||||
T Consensus       395 ~l~h~nIv~~~~~~~~~~~~~lVmE~~~ggsL~~~l~~-------------~~~i~~qi~~aL~~LH---~~gIiHrDiK  458 (540)
T 3en9_A          395 LVKDFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIED-------------NLDIAYKIGEIVGKLH---KNDVIHNDLT  458 (540)
T ss_dssp             HGGGGTCCCCCEEEEETTTTEEEEECCCSEEHHHHSTT-------------CTHHHHHHHHHHHHHH---HTTEECTTCC
T ss_pred             hcCCCCcCceEEEEEeCCccEEEEECCCCCCHHHHHHH-------------HHHHHHHHHHHHHHHH---HCcCccCCCC
Confidence            36899999776677788888999999999999999864             4478999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc------eeecccccccccCcccccc--CCcccccchhhhhhHHHHHhcCCC
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH------ITDTVMGTLGYCAPEYMRT--GVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      |+|||++.  .+||+|||+++........      ......||+.|+|||++..  ..|+...|+||..+-..+-+.++.
T Consensus       459 p~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~  536 (540)
T 3en9_A          459 TSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRA  536 (540)
T ss_dssp             TTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCS
T ss_pred             HHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            99999998  8999999999876443211      1235679999999999987  568888999999888887777655


Q ss_pred             Cc
Q 044155          153 VS  154 (239)
Q Consensus       153 p~  154 (239)
                      +|
T Consensus       537 rY  538 (540)
T 3en9_A          537 RY  538 (540)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.67  E-value=1.1e-17  Score=131.84  Aligned_cols=78  Identities=17%  Similarity=0.165  Sum_probs=64.8

Q ss_pred             ceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeec
Q 044155            8 LKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFN   87 (239)
Q Consensus         8 v~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~   87 (239)
                      +++++++.. +..++||||+++++|.+ +..           .....++.|++.||.|||   +.+++|+||||+|||++
T Consensus       164 ~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~-----------~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~  227 (282)
T 1zar_A          164 LAVPKVYAW-EGNAVLMELIDAKELYR-VRV-----------ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS  227 (282)
T ss_dssp             SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC-----------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE
T ss_pred             CCcCeEEec-cceEEEEEecCCCcHHH-cch-----------hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE
Confidence            566665543 55699999999999988 421           123368999999999999   89999999999999999


Q ss_pred             CCCceeEcccccccc
Q 044155           88 EENVAKLFDFSLSIS  102 (239)
Q Consensus        88 ~~~~~~l~dfg~~~~  102 (239)
                       ++.++|+|||++..
T Consensus       228 -~~~vkl~DFG~a~~  241 (282)
T 1zar_A          228 -EEGIWIIDFPQSVE  241 (282)
T ss_dssp             -TTEEEECCCTTCEE
T ss_pred             -CCcEEEEECCCCeE
Confidence             99999999999853

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.40  E-value=1.8e-13  Score=106.44  Aligned_cols=74  Identities=16%  Similarity=0.144  Sum_probs=59.0

Q ss_pred             CCceEEEEEccC-C----ChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCce
Q 044155           18 PIPILVFESVQY-G----TLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVA   92 (239)
Q Consensus        18 ~~~~iv~e~~~~-~----sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~   92 (239)
                      ...++||||+.+ |    +|.+....        .+......++.|++.||.+||.  ..+++|+||||+|||++.  .+
T Consensus       141 ~~~~lVmE~~g~~g~~~~~L~~~~~~--------~~~~~~~~i~~qi~~~l~~lH~--~~givHrDlkp~NILl~~--~~  208 (258)
T 1zth_A          141 MKNVLLMEFIGEDELPAPTLVELGRE--------LKELDVEGIFNDVVENVKRLYQ--EAELVHADLSEYNIMYID--KV  208 (258)
T ss_dssp             ETTEEEEECCEETTEECCBHHHHGGG--------GGGSCHHHHHHHHHHHHHHHHH--TSCEECSSCSTTSEEESS--SE
T ss_pred             CCCEEEEEecCCCCCccccHHHHhhc--------cChHHHHHHHHHHHHHHHHHHH--HCCEEeCCCCHHHEEEcC--cE
Confidence            356899999942 3    66665432        2234567889999999999995  579999999999999988  89


Q ss_pred             eEccccccccc
Q 044155           93 KLFDFSLSISI  103 (239)
Q Consensus        93 ~l~dfg~~~~~  103 (239)
                      +|+|||++...
T Consensus       209 ~liDFG~a~~~  219 (258)
T 1zth_A          209 YFIDMGQAVTL  219 (258)
T ss_dssp             EECCCTTCEET
T ss_pred             EEEECcccccC
Confidence            99999998654

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.17  E-value=2.2e-12  Score=105.02  Aligned_cols=70  Identities=16%  Similarity=0.191  Sum_probs=56.5

Q ss_pred             CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCC--------
Q 044155           19 IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEEN--------   90 (239)
Q Consensus        19 ~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~--------   90 (239)
                      ..++||||++|++|.++...           .....++.|++.+|.+||   ..|++||||||.|||++.++        
T Consensus       185 ~~~LVME~i~G~~L~~l~~~-----------~~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~~dgd~~d~~~~  250 (397)
T 4gyi_A          185 RHTIVMSLVDALPMRQVSSV-----------PDPASLYADLIALILRLA---KHGLIHGDFNEFNILIREEKDAEDPSSI  250 (397)
T ss_dssp             TTEEEEECCSCEEGGGCCCC-----------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEEEEECSSCTTSE
T ss_pred             CceEEEEecCCccHhhhccc-----------HHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeCCCCccccccc
Confidence            34799999998888654321           123467899999999999   89999999999999998876        


Q ss_pred             --ceeEcccccccc
Q 044155           91 --VAKLFDFSLSIS  102 (239)
Q Consensus        91 --~~~l~dfg~~~~  102 (239)
                        .+.|+||+-+..
T Consensus       251 ~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          251 TLTPIIIXFPQMVS  264 (397)
T ss_dssp             EEEEEECCCTTCEE
T ss_pred             ccceEEEEeCCccc
Confidence              378999997644

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.76  E-value=8.7e-09  Score=79.84  Aligned_cols=88  Identities=11%  Similarity=-0.006  Sum_probs=67.3

Q ss_pred             CcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCC-------------
Q 044155            4 HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGF-------------   70 (239)
Q Consensus         4 H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~-------------   70 (239)
                      +..+.++++++.+.+..++|||+++|.+|.+.+..          ......++.+++.+++.||...             
T Consensus        69 ~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~~----------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~  138 (263)
T 3tm0_A           69 KLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED----------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSR  138 (263)
T ss_dssp             TSCCCCEEEEEEETTEEEEEEECCSSEEHHHHCCT----------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHH
T ss_pred             CCCCCeEEEEEecCCceEEEEEecCCeehhhccCC----------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHH
Confidence            45677888888888888999999999998776421          1122367888999999999510             


Q ss_pred             -------------------------------------------CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 -------------------------------------------PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 -------------------------------------------~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                                                                 ...++|+|++|.||+++.+..+.|+||+.+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          139 LAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             HHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                                                       1459999999999999876556799998763

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.63  E-value=4.2e-08  Score=75.66  Aligned_cols=82  Identities=12%  Similarity=-0.004  Sum_probs=59.5

Q ss_pred             cceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCC----------------
Q 044155            7 ILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGF----------------   70 (239)
Q Consensus         7 iv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~----------------   70 (239)
                      +.+++++...++..++|||+++|.+|.  ...        ...   ..++.+++..|..||...                
T Consensus        77 vP~~~~~~~~~~~~~~v~e~i~G~~l~--~~~--------~~~---~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~  143 (264)
T 1nd4_A           77 CAAVLDVVTEAGRDWLLLGEVPGQDLL--SSH--------LAP---AEKVSIMADAMRRLHTLDPATCPFDHQAKHRIER  143 (264)
T ss_dssp             BCCEEEEEECSSCEEEEEECCSSEETT--TSC--------CCH---HHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHH
T ss_pred             CCeEEEeccCCCCCEEEEEecCCcccC--cCc--------CCH---hHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHH
Confidence            456788877777789999999988873  211        111   245677777788888321                


Q ss_pred             ---------------------------------------CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 ---------------------------------------PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ---------------------------------------~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                                                             ...++|+|++|.||+++.++.+.|+||+.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          144 ARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             HHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence                                                   1129999999999999877666799999864

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.60  E-value=1.2e-07  Score=76.80  Aligned_cols=92  Identities=20%  Similarity=0.307  Sum_probs=70.6

Q ss_pred             CcccceeeEEEEeC---CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCC----------
Q 044155            4 HNHILKLIGCCLET---PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGF----------   70 (239)
Q Consensus         4 H~niv~l~~~~~~~---~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~----------   70 (239)
                      +..+.+++.++.+.   +..++|||+++|.++.+...       ..++......++.+++..|+.||...          
T Consensus        97 ~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l~~~~~-------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~  169 (359)
T 3dxp_A           97 DVPVAKMYALCEDESVIGRAFYIMEFVSGRVLWDQSL-------PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYG  169 (359)
T ss_dssp             SSCCCCEEEEECCTTTTSSCEEEEECCCCBCCCCTTC-------TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSS
T ss_pred             CCCCCcEEEECCCCCccCCeEEEEEecCCeecCCCcc-------ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccC
Confidence            34577888888766   44789999999877744211       34677888889999999999999410          


Q ss_pred             ---------------------------------------------CCCeeeccccCcceeecCCCc--eeEcccccccc
Q 044155           71 ---------------------------------------------PRPIVFRNFKTSCILFNEENV--AKLFDFSLSIS  102 (239)
Q Consensus        71 ---------------------------------------------~~~i~H~dlk~~nil~~~~~~--~~l~dfg~~~~  102 (239)
                                                                   ...++|+|+++.||+++.++.  +.|+||+.+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          170 KPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             CCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                                                         257999999999999997753  68999998754

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.47  E-value=5.7e-08  Score=76.96  Aligned_cols=127  Identities=17%  Similarity=0.251  Sum_probs=79.0

Q ss_pred             CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhC-----------------------------
Q 044155           19 IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFG-----------------------------   69 (239)
Q Consensus        19 ~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-----------------------------   69 (239)
                      ..++||++++|.++.+...       ..++..++..++.+++..++.||..                             
T Consensus        90 ~~~~vm~~i~G~~l~~~~~-------~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (304)
T 3sg8_A           90 MSFAGFTKIKGVPLTPLLL-------NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLS  162 (304)
T ss_dssp             CSCEEEECCCCEECCHHHH-------HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHT
T ss_pred             cceEEEcccCCeECCcccc-------ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhc
Confidence            3478999999988865332       2356666777777777777777731                             


Q ss_pred             --------------------------CCCCeeeccccCcceeecC--CCceeEcccccccccCCCCcce-e---------
Q 044155           70 --------------------------FPRPIVFRNFKTSCILFNE--ENVAKLFDFSLSISIPEGETHI-T---------  111 (239)
Q Consensus        70 --------------------------~~~~i~H~dlk~~nil~~~--~~~~~l~dfg~~~~~~~~~~~~-~---------  111 (239)
                                                ....++|+|++|.||+++.  ...+.++||+.+........-. .         
T Consensus       163 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~  242 (304)
T 3sg8_A          163 RELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGM  242 (304)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCH
T ss_pred             ccCCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCH
Confidence                                      0135899999999999998  4567899999876543211000 0         


Q ss_pred             ---ecccccccccC-ccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155          112 ---DTVMGTLGYCA-PEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus       112 ---~~~~~~~~y~a-PE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                         .......+... |+...  ......+.|++|.++|.+.+|..++
T Consensus       243 ~~~~~~l~~Y~~~~~~~~~~--r~~~~~~~~~l~~~~~~~~~g~~~~  287 (304)
T 3sg8_A          243 EFVSKILNHYKHKDIPTVLE--KYRMKEKYWSFEKIIYGKEYGYMDW  287 (304)
T ss_dssp             HHHHHHHHHHTCSCHHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHH--HHHHHHHHHHHHHHHHHHHcCCHHH
Confidence               00000001111 12111  1122357899999999999996654

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.81  E-value=4.5e-05  Score=58.99  Aligned_cols=86  Identities=12%  Similarity=0.038  Sum_probs=60.3

Q ss_pred             cceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhC-----------------
Q 044155            7 ILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFG-----------------   69 (239)
Q Consensus         7 iv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-----------------   69 (239)
                      +-++++++.+.+..++|||+++|.++.+.....         ......+..++...|+.||..                 
T Consensus        82 VP~v~~~~~~~~~~~lvme~l~G~~~~~~~~~~---------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~  152 (272)
T 4gkh_A           82 LPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEY---------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQ  152 (272)
T ss_dssp             CCCEEEEEEETTEEEEEEECCCSEEHHHHHHHC---------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHH
T ss_pred             cCeEEEEEEECCeEEEEEEeeCCccccccccCC---------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhh
Confidence            456778888888889999999988877655332         112223455555666666610                 


Q ss_pred             --------------------------------------CCCCeeeccccCcceeecCCCceeEccccccc
Q 044155           70 --------------------------------------FPRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        70 --------------------------------------~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                                                            ....++|+|+.+.||+++.++.+-|+||+.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          153 AQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             HHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHHhhhhhhhccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence                                                  02238999999999999987767799999764

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.63  E-value=0.00019  Score=56.69  Aligned_cols=32  Identities=13%  Similarity=0.218  Sum_probs=25.5

Q ss_pred             CCCeeeccccCcceeecC---CCc-eeEcccccccc
Q 044155           71 PRPIVFRNFKTSCILFNE---ENV-AKLFDFSLSIS  102 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~---~~~-~~l~dfg~~~~  102 (239)
                      ...++|+|+.|.||+++.   ++. +.|+||+.+..
T Consensus       189 ~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          189 TPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             CCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             CCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence            346799999999999987   344 48999997644

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=97.51  E-value=0.0011  Score=49.34  Aligned_cols=103  Identities=12%  Similarity=-0.021  Sum_probs=65.6

Q ss_pred             CChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcc
Q 044155           30 GTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH  109 (239)
Q Consensus        30 ~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~  109 (239)
                      -||.++++..+    .++.+.++..++.|.+.+|.-+-.  ...-..+=..|..|++..+|.+...+ +.+.        
T Consensus        33 vSL~eIL~~~~----~PlsEEqaWALc~Qc~~~L~~~~~--~~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~--------   97 (229)
T 2yle_A           33 LSLEEILRLYN----QPINEEQAWAVCYQCCGSLRAAAR--RRQPRHRVRSAAQIRVWRDGAVTLAP-AADD--------   97 (229)
T ss_dssp             EEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCSGGGEEEETTSCEEECC-C-----------
T ss_pred             ccHHHHHHHcC----CCcCHHHHHHHHHHHHHHHHhhhh--cccCCceecCCcceEEecCCceeccc-cccc--------
Confidence            58999998765    789999999999999999887621  11111223346788888888776553 1110        


Q ss_pred             eeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCC
Q 044155          110 ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus       110 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                           .....+.|||... ...+.+.-|||||+++|.-+.-..|
T Consensus        98 -----~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~  135 (229)
T 2yle_A           98 -----AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK  135 (229)
T ss_dssp             --------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             -----ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence                 0122356777653 3456788899999999998875443

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.28  E-value=0.00081  Score=54.08  Aligned_cols=32  Identities=6%  Similarity=0.276  Sum_probs=26.4

Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~  102 (239)
                      ...++|+|+.+.||+++++..+.|+||+.+..
T Consensus       221 ~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          221 EPVLLWGDARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             CCEEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred             CceEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence            45799999999999999644578999998743

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=95.86  E-value=0.012  Score=46.75  Aligned_cols=31  Identities=13%  Similarity=0.232  Sum_probs=27.6

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      ...++|+|+.+.||+++.++.+.++||+.+.
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            5789999999999999877889999999763

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=95.80  E-value=0.034  Score=43.44  Aligned_cols=31  Identities=13%  Similarity=0.062  Sum_probs=25.4

Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~  102 (239)
                      ...++|+|+.+.||+ ..++.+.++||..+..
T Consensus       172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CCEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             CceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            445899999999999 5566789999987654

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=95.60  E-value=0.11  Score=38.38  Aligned_cols=142  Identities=5%  Similarity=-0.065  Sum_probs=86.1

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .||+.+.. .+-.+.+.+  ++.|-...+..++-.-      ...+...+++++.+|+.-..+++     .-+|--+.|+
T Consensus        43 ~~~~Fl~~-~I~e~eD~v--~~~y~~~~~~~~f~~i------k~~~~~eKlr~l~ni~~l~~~~~-----~r~tf~L~P~  108 (215)
T 4ann_A           43 HSPYFIDA-ELTELRDSF--QIHYDINDNHTPFDNI------KSFTKNEKLRYLLNIKNLEEVNR-----TRYTFVLAPD  108 (215)
T ss_dssp             CCTTBCCE-EEEECSSEE--EEEECCCTTSEEGGGG------GGSCHHHHHHHHHHGGGGGGGGG-----SSEECCCSGG
T ss_pred             cCCcccce-EEEEcccEE--EEEEEcCcccCCHHHH------HhcCHHHHHHHHHHHHHHHHHhc-----CceEEEEecc
Confidence            56777765 444455544  4444332323222221      45778999999999988776655     3478889999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccch-hhhhhHHHHHhcCCCCcccccccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNV-FSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      |++++.++.+++.-.|+...++                  |.     ..+ ..|. -..=+++..+++++..|+..-.+.
T Consensus       109 NL~f~~~~~p~i~~RGik~~l~------------------P~-----~~~-ee~fL~qyKAliiall~~K~~Fe~l~~G~  164 (215)
T 4ann_A          109 ELFFTRDGLPIAKTRGLQNVVD------------------PL-----PVS-EAEFLTRYKALVICAFNEKQSFDALVEGN  164 (215)
T ss_dssp             GEEECTTSCEEESCCEETTTBS------------------CC-----CCC-HHHHHHHHHHHHHHHHCTTCCHHHHHHSC
T ss_pred             eEEEcCCCCEEEEEccCccCCC------------------CC-----CCC-HHHHHHHHHHHHHHHHcCCCCHHHHHcCh
Confidence            9999999999999888642221                  11     111 1122 246677888999988887655444


Q ss_pred             cccccchhhhhhhhhccchhh
Q 044155          162 DLVCPFSEYLKNCFEDNRFTE  182 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (239)
                      ........+........+..+
T Consensus       165 lel~k~~~f~~~I~~a~tlee  185 (215)
T 4ann_A          165 LELHKGTPFETKVIEAATLDL  185 (215)
T ss_dssp             GGGCCCCHHHHHHHHCCSHHH
T ss_pred             HhhccCCHHHHHHHccCCHHH
Confidence            433323444444444444433

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=95.33  E-value=0.02  Score=47.08  Aligned_cols=77  Identities=14%  Similarity=0.237  Sum_probs=45.8

Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccc--cccccCccccccC---CcccccchhhhhhHHH
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG--TLGYCAPEYMRTG---VFNEKSNVFSFSVFLF  145 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~--~~~y~aPE~~~~~---~~~~~~Di~slG~~l~  145 (239)
                      ...++|+|+.|.||+++.++ +.++||+.+........  ......  ...|++|+.....   .......+.+....+|
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~D--la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFD--IGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTW  307 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHH--HHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHH--HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence            78899999999999998876 99999998765432111  011111  1235555544311   1112234446666677


Q ss_pred             HHhcC
Q 044155          146 ELLTG  150 (239)
Q Consensus       146 ~~~~g  150 (239)
                      +.+++
T Consensus       308 ~~y~~  312 (420)
T 2pyw_A          308 NLFNK  312 (420)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76664

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=93.68  E-value=0.78  Score=33.99  Aligned_cols=86  Identities=13%  Similarity=0.159  Sum_probs=59.4

Q ss_pred             CcCCHHHHHHHHHHHHHHHh-HHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCc
Q 044155           45 EPLLLKHRLKIAMDIVHALA-YLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAP  123 (239)
Q Consensus        45 ~~~~~~~~~~~~~~i~~~l~-~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  123 (239)
                      ...+...+++++.+|+.-.. +++     .-+|--+.|+|++++.++.+++.-.|+-..+                  +|
T Consensus        80 ~~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL~f~~~~~p~i~hRGi~~~l------------------pP  136 (219)
T 4ano_A           80 RKTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENLMFNRALEPFFLHVGVKESL------------------PP  136 (219)
T ss_dssp             HTSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGEEECTTCCEEESCCEETTTB------------------SS
T ss_pred             HhcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceEEEeCCCcEEEEEcCCcccC------------------CC
Confidence            34678899999999988666 544     4578889999999999999999988864222                  11


Q ss_pred             cccccCCcccccchh-hhhhHHHHHhcCCCCcccccc
Q 044155          124 EYMRTGVFNEKSNVF-SFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus       124 E~~~~~~~~~~~Di~-slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ..     . ...|.| ..=+++..++.++..|+..-.
T Consensus       137 ~e-----~-~ee~fl~qyKali~all~~K~~Fe~l~~  167 (219)
T 4ano_A          137 DE-----W-DDERLLREVKATVLALTEGEYRFDEYLK  167 (219)
T ss_dssp             CS-----C-CHHHHHHHHHHHHHHHTTCSSCHHHHHH
T ss_pred             CC-----C-CHHHHHHHHHHHHHHHHcCCCCHHHHHh
Confidence            11     1 112222 456677788888777765443

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=93.50  E-value=0.13  Score=40.67  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=28.0

Q ss_pred             CCCeeeccccCcceeecCC----CceeEccccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEE----NVAKLFDFSLSISI  103 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~----~~~~l~dfg~~~~~  103 (239)
                      ...++|+|+.+.||+++.+    +.+.++||+.+...
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            5689999999999999874    67899999987554

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=93.45  E-value=0.026  Score=44.41  Aligned_cols=31  Identities=16%  Similarity=0.442  Sum_probs=26.2

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      ...++|+|+.+.||+++.++.+.++||+.+.
T Consensus       186 ~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          186 PAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             CcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            4579999999999999887656899998763

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=92.90  E-value=0.14  Score=40.33  Aligned_cols=30  Identities=10%  Similarity=0.118  Sum_probs=25.6

Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~  102 (239)
                      ...++|+|+.+.||+++ + .+.++||+.+..
T Consensus       194 ~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          194 TVLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             CeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            56789999999999998 4 789999987644

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=92.02  E-value=0.18  Score=42.01  Aligned_cols=17  Identities=18%  Similarity=0.239  Sum_probs=15.2

Q ss_pred             CCCeeeccccCcceeec
Q 044155           71 PRPIVFRNFKTSCILFN   87 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~   87 (239)
                      ...++|+|+.+.|||++
T Consensus       289 ~~v~cHnDl~~gNIL~~  305 (458)
T 2qg7_A          289 PIVLCHCDLLSSNIINT  305 (458)
T ss_dssp             CEEEECSCCCGGGEEEC
T ss_pred             CeeEEecCCCCCcEEee
Confidence            34699999999999998

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=91.77  E-value=0.11  Score=41.27  Aligned_cols=32  Identities=9%  Similarity=0.221  Sum_probs=27.6

Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~  102 (239)
                      ...++|+|+.+.||+++.++.+.++||+.+..
T Consensus       205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            45799999999999998877899999987643

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=91.18  E-value=0.15  Score=42.09  Aligned_cols=19  Identities=16%  Similarity=0.377  Sum_probs=16.0

Q ss_pred             CCCeeeccccCcceeecCC
Q 044155           71 PRPIVFRNFKTSCILFNEE   89 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~   89 (239)
                      ...++|+|+.+.||+++.+
T Consensus       248 ~~v~~H~Dl~~gNiL~~~~  266 (429)
T 1nw1_A          248 PVTFCHNDLQEGNILLPKA  266 (429)
T ss_dssp             CEEEECSCCCGGGEEEEC-
T ss_pred             CeEEEeCCCCCCeEEeeCC
Confidence            3469999999999999875

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=91.15  E-value=0.11  Score=41.87  Aligned_cols=30  Identities=17%  Similarity=0.251  Sum_probs=24.7

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      ...++|+|+.+.||+++.++ +.++||..+.
T Consensus       211 ~~~l~HgDl~~~Nil~~~~~-~~lID~e~a~  240 (369)
T 3c5i_A          211 TIVFCHNDLQENNIINTNKC-LRLIDFEYSG  240 (369)
T ss_dssp             CEEEECSCCCGGGEEECC-C-EEECCCTTCE
T ss_pred             CeEEEeCCCCcccEEecCCc-EEEEEecCCC
Confidence            45699999999999997655 8999998764

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=90.28  E-value=0.16  Score=41.26  Aligned_cols=32  Identities=16%  Similarity=0.296  Sum_probs=26.9

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSISI  103 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~  103 (239)
                      ...++|+|+.+.||+++.++ +.++||..+...
T Consensus       226 ~~~L~HGDl~~~Nil~~~~~-~~lID~e~a~~G  257 (397)
T 2olc_A          226 AETLIHGDLHTGSIFASEHE-TKVIDPEFAFYG  257 (397)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CCceeeCCCCcCcEEEeCCC-eEEEeCcccccC
Confidence            56899999999999998764 899999876543

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=89.52  E-value=0.18  Score=40.92  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=26.7

Q ss_pred             CCCeeeccccCcceeecCC----CceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEE----NVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~----~~~~l~dfg~~~  101 (239)
                      ...++|+|+.+.||+++.+    +.+.++||..+.
T Consensus       219 ~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          219 PVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             CEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             CcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence            4579999999999999876    678999998763

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=88.13  E-value=0.26  Score=40.18  Aligned_cols=28  Identities=25%  Similarity=0.382  Sum_probs=23.4

Q ss_pred             eeeccccCcceee------cCCCceeEccccccc
Q 044155           74 IVFRNFKTSCILF------NEENVAKLFDFSLSI  101 (239)
Q Consensus        74 i~H~dlk~~nil~------~~~~~~~l~dfg~~~  101 (239)
                      ++|+|+.+.||++      +.+..+.++||.++.
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~  279 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS  279 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence            5799999999999      345678999998864

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=84.42  E-value=0.47  Score=39.08  Aligned_cols=30  Identities=13%  Similarity=0.337  Sum_probs=25.9

Q ss_pred             CCCeeeccccCcceeecCCCceeEccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      ...++|+|+.+.||+ +.++.+.++||..+.
T Consensus       261 ~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~  290 (424)
T 3mes_A          261 SLVFAHNDLQENNLL-QTQNNIRMIDYEYSA  290 (424)
T ss_dssp             CEEEECSCCCGGGEE-ECSSCEEECCCTTCE
T ss_pred             CceEECCCCCcccee-cCCCcEEEEecccCC
Confidence            356899999999999 777889999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	5e-38
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-35
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-34
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-33
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-33
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-32
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-32
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	4e-32
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	4e-32
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-31
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-31
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-31
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-31
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	6e-31
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-30
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	9e-30
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-29
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-29
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-29
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-28
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-28
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-28
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	3e-28
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	5e-28
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	6e-28
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-27
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-27
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-26
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-26
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	6e-26
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	7e-26
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-25
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-23
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-23
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-23
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	5e-22
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	6e-22
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	9e-22
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	4e-20
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-19
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-19
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	3e-19
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-19
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	9e-19
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-18
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-18
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-18
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	9e-18
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-17
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-17
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-17
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	6e-17
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-16
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-16
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	4e-15
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	3e-14
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-13
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-13
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-11
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-08
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	9e-04

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 5e-38
 Identities = 43/243 (17%), Positives = 96/243 (39%), Gaps = 35/243 (14%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           +  H +IL  +G     P   +V +  +  +L+  +            +   + IA    
Sbjct: 60  KTRHVNILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHIIETK----FEMIKLIDIARQTA 114

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLG 119
             + YLH    + I+ R+ K++ I  +E+   K+ DF L+        +H  + + G++ 
Sbjct: 115 QGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSIL 171

Query: 120 YCAPEYMRT---GVFNEKSNVFSFSVFLFELLTG---WDVSDLVKDVHDLVCPFSEYLKN 173
           + APE +R      ++ +S+V++F + L+EL+TG   +   +    +  +V         
Sbjct: 172 WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMV-------GR 224

Query: 174 CFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY 233
            +     +++  +        + +             C+K    +RP    +   +  + 
Sbjct: 225 GYLSPDLSKVRSNCPKAMKRLMAE-------------CLKKKRDERPLFPQILASIELLA 271

Query: 234 RSL 236
           RSL
Sbjct: 272 RSL 274

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (313), Expect = 2e-35
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 28/235 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  +++L     + PI  ++ E ++ G+L D +     P    L +   L +A  I 
Sbjct: 64  QLQHQRLVRLYAVVTQEPI-YIITEYMENGSLVDFLK---TPSGIKLTINKLLDMAAQIA 119

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +A++     R  + R+ + + IL ++    K+ DF L+  I + E    +     + +
Sbjct: 120 EGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 176

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            APE +  G F  KS+V+SF + L E++T                      +  +     
Sbjct: 177 TAPEAINYGTFTIKSDVWSFGILLTEIVTHG--------------------RIPYPGMTN 216

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
            E++ ++       +  +       Q+   C K+ P DRP+   +   L   + +
Sbjct: 217 PEVIQNL-ERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA 270

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 2e-34
 Identities = 51/235 (21%), Positives = 99/235 (42%), Gaps = 28/235 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++SH  +++L G CLE     LVFE +++G L D +             +  L + +D+ 
Sbjct: 56  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAA----ETLLGMCLDVC 111

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AYL       ++ R+      L  E  V K+ DF ++  + + +   +      + +
Sbjct: 112 EGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 168

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            +PE      ++ KS+V+SF V ++E+ +                      K  +E+   
Sbjct: 169 ASPEVFSFSRYSSKSDVWSFGVLMWEVFSEG--------------------KIPYENRSN 208

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
           +E+V+ I         +    H   Q+   C K+ P DRP+   + ++L +I  S
Sbjct: 209 SEVVEDISTGFRLYKPRLASTHV-YQIMNHCWKERPEDRPAFSRLLRQLAEIAES 262

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 1e-33
 Identities = 39/232 (16%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            +SH  +++L G C +     ++ E +  G L + +    +        +  L++  D+ 
Sbjct: 55  NLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL----REMRHRFQTQQLLEMCKDVC 110

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            A+ YL     +  + R+      L N++ V K+ DF LS  + + E   +      + +
Sbjct: 111 EAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRW 167

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
             PE +    F+ KS++++F V ++E+ +                      K  +E    
Sbjct: 168 SPPEVLMYSKFSSKSDIWAFGVLMWEIYSLG--------------------KMPYERFTN 207

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
           +E  +HI  + +              + + C  +   +RP+   +   +  +
Sbjct: 208 SETAEHI-AQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDV 258

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 2e-33
 Identities = 42/255 (16%), Positives = 96/255 (37%), Gaps = 29/255 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPI----LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIA 56
            + H +IL  I    +         LV +  ++G+L+D +      +   + ++  +K+A
Sbjct: 53  MLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYL------NRYTVTVEGMIKLA 106

Query: 57  MDIVHALAYLH-----FGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHI- 110
           +     LA+LH           I  R+ K+  IL  +     + D  L++        I 
Sbjct: 107 LSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTID 166

Query: 111 --TDTVMGTLGYCAPEYMRTGV------FNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD 162
              +  +GT  Y APE +   +        +++++++  +  +E+     +  + +D   
Sbjct: 167 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL 226

Query: 163 LVCPFSEYLKNCFE--DNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP 220
                     +  E       + +   +     S E  + +   A++  EC   + A R 
Sbjct: 227 PYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVM---AKIMRECWYANGAARL 283

Query: 221 SMVDVAKKLRQIYRS 235
           + + + K L Q+ + 
Sbjct: 284 TALRIKKTLSQLSQQ 298

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 2e-32
 Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 31/241 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ + +I++LIG C +    +LV E    G L   ++G      E + + +  ++   + 
Sbjct: 65  QLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVG----KREEIPVSNVAELLHQVS 119

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT--DTVMGTL 118
             + YL     +  V R+     +L    + AK+ DF LS ++   +++ T        L
Sbjct: 120 MGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPL 176

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDN 178
            + APE +    F+ +S+V+S+ V ++E L+                    Y +  ++  
Sbjct: 177 KWYAPECINFRKFSSRSDVWSYGVTMWEALS--------------------YGQKPYKKM 216

Query: 179 RFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLSC 238
           +  E++  I          E        +  +C      DRP  + V +++R  Y SL+ 
Sbjct: 217 KGPEVMAFIEQGKRMECPPECPPEL-YALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 275

Query: 239 N 239
            
Sbjct: 276 K 276

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 3e-32
 Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 32/233 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
           Q+ H+++++L+G  +E    + +V E +  G+L D +    +           LK ++D+
Sbjct: 56  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGG---DCLLKFSLDV 112

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
             A+ YL        V R+     +L +E+NVAK+ DF L+      +     T    + 
Sbjct: 113 CEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD----TGKLPVK 165

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
           + APE +R   F+ KS+V+SF + L+E+ +                      +  +    
Sbjct: 166 WTAPEALREKKFSTKSDVWSFGILLWEIYSFG--------------------RVPYPRIP 205

Query: 180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
             ++V  +          +    A  +V   C     A RPS + + ++L  I
Sbjct: 206 LKDVVPRVEKGYKMDAP-DGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHI 257

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 4e-32
 Identities = 44/246 (17%), Positives = 91/246 (36%), Gaps = 31/246 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           + +  +I+   G         +  E +  G+L   +          +  +   K+++ ++
Sbjct: 60  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVL-----KKAGRIPEQILGKVSIAVI 114

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             L YL       I+ R+ K S IL N     KL DF +S  + +   +   + +GT  Y
Sbjct: 115 KGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN---SFVGTRSY 169

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG---------------------WDVSDLVKD 159
            +PE ++   ++ +S+++S  + L E+  G                      D ++    
Sbjct: 170 MSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPR 229

Query: 160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADR 219
                 P S Y  +        E++D+IV E    +              +C+  +PA+R
Sbjct: 230 PRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAER 289

Query: 220 PSMVDV 225
             +  +
Sbjct: 290 ADLKQL 295

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 4e-32
 Identities = 52/236 (22%), Positives = 88/236 (37%), Gaps = 28/236 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H  +++L     E PI I V E +  G+L D + G    +     L   + +A  I 
Sbjct: 68  KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKYLR---LPQLVDMAAQIA 123

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             +AY+        V R+ + + IL  E  V K+ DF L+  I + E          + +
Sbjct: 124 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 180

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            APE    G F  KS+V+SF + L EL T                      +  +     
Sbjct: 181 TAPEAALYGRFTIKSDVWSFGILLTELTTKG--------------------RVPYPGMVN 220

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL 236
            E++D +          E        +  +C +  P +RP+   +   L   + S 
Sbjct: 221 REVLDQVERGYRMPCPPECPESL-HDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 275

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 2e-31
 Identities = 43/247 (17%), Positives = 81/247 (32%), Gaps = 42/247 (17%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFE---------------- 45
            SH +I+ L+G C  +    L+FE   YG L + +    +   E                
Sbjct: 98  GSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEED 157

Query: 46  --PLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI 103
              L  +  L  A  +   + +L F   +  V R+     +L     V K+ DF L+  I
Sbjct: 158 LNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLARDI 214

Query: 104 PEGETHITD-TVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHD 162
                ++        + + APE +  G++  KS+V+S+ + L+E+ +             
Sbjct: 215 MSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLG----------- 263

Query: 163 LVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM 222
                     N +           ++       +          +   C       RPS 
Sbjct: 264 ---------VNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSF 314

Query: 223 VDVAKKL 229
            ++   L
Sbjct: 315 PNLTSFL 321

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  115 bits (288), Expect = 2e-31
 Identities = 50/252 (19%), Positives = 93/252 (36%), Gaps = 44/252 (17%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI-------------------LGAPQ 41
           +  + +I+KL+G C       L+FE + YG L + +                        
Sbjct: 72  EFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSS 131

Query: 42  PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSI 101
           P   PL    +L IA  +   +AYL     R  V R+  T   L  E  V K+ DF LS 
Sbjct: 132 PGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSR 188

Query: 102 SIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV 160
           +I   +           + +  PE +    +  +S+V+++ V L+E+ +           
Sbjct: 189 NIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYG--------- 239

Query: 161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP 220
                         +      E++ ++   ++ +  +   L     +   C    PADRP
Sbjct: 240 -----------LQPYYGMAHEEVIYYVRDGNILACPENCPLEL-YNLMRLCWSKLPADRP 287

Query: 221 SMVDVAKKLRQI 232
           S   + + L+++
Sbjct: 288 SFCSIHRILQRM 299

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 2e-31
 Identities = 44/238 (18%), Positives = 88/238 (36%), Gaps = 32/238 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ + +I+++IG C E    +LV E  + G L   +          +  K+ +++   + 
Sbjct: 64  QLDNPYIVRMIGIC-EAESWMLVMEMAELGPLNKYL-----QQNRHVKDKNIIELVHQVS 117

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT--DTVMGTL 118
             + YL        V R+     +L   ++ AK+ DF LS ++   E +          +
Sbjct: 118 MGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPV 174

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDN 178
            + APE +    F+ KS+V+SF V ++E  +                    Y +  +   
Sbjct: 175 KWYAPECINYYKFSSKSDVWSFGVLMWEAFS--------------------YGQKPYRGM 214

Query: 179 RFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL 236
           + +E+   +   +               +   C      +RP    V  +LR  Y  +
Sbjct: 215 KGSEVTAMLEKGERMGCPAGCPREM-YDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 271

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 3e-31
 Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 34/225 (15%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + H +IL+L G   +     L+ E    GT++  +             +       ++ 
Sbjct: 62  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYREL-----QKLSKFDEQRTATYITELA 116

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
           +AL+Y H    + ++ R+ K   +L       K+ DF  S+  P        T+ GTL Y
Sbjct: 117 NALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT---TLCGTLDY 170

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
             PE +   + +EK +++S  V  +E L G                     K  FE N +
Sbjct: 171 LPPEMIEGRMHDEKVDLWSLGVLCYEFLVG---------------------KPPFEANTY 209

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV 225
            E    I   + +  +   +   +  +    +K +P+ RP + +V
Sbjct: 210 QETYKRISRVEFTFPDFVTE--GARDLISRLLKHNPSQRPMLREV 252

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 6e-31
 Identities = 50/234 (21%), Positives = 93/234 (39%), Gaps = 30/234 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + H ++++L G  L  P+  +V E    G+L DR     + H    LL    + A+ + 
Sbjct: 67  SLDHRNLIRLYGVVLTPPM-KMVTELAPLGSLLDR----LRKHQGHFLLGTLSRYAVQVA 121

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTL 118
             + YL     +  + R+     +L    ++ K+ DF L  ++P+ + H  + +      
Sbjct: 122 EGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPF 178

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDN 178
            +CAPE ++T  F+  S+ + F V L+E+ T                    Y +  +   
Sbjct: 179 AWCAPESLKTRTFSHASDTWMFGVTLWEMFT--------------------YGQEPWIGL 218

Query: 179 RFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
             ++I+  I  E       E        V  +C    P DRP+ V +   L + 
Sbjct: 219 NGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 272

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (281), Expect = 2e-30
 Identities = 46/237 (19%), Positives = 90/237 (37%), Gaps = 27/237 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H ++++L+G C   P   ++ E + YG L D +    +           L +A  I 
Sbjct: 69  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSA---VVLLYMATQIS 125

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            A+ YL     +  + R+      L  E ++ K+ DF LS  +              + +
Sbjct: 126 SAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKW 182

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            APE +    F+ KS+V++F V L+E+ T                               
Sbjct: 183 TAPESLAYNKFSIKSDVWAFGVLLWEIATY---------------------GMSPYPGID 221

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLS 237
              V  ++ +D      E       ++   C + +P+DRPS  ++ +    +++  S
Sbjct: 222 LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESS 278

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 9e-30
 Identities = 39/244 (15%), Positives = 84/244 (34%), Gaps = 37/244 (15%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTLWDRI-------------LGAPQPHFEPLLL 49
           +H +I+ L+G C      +++ E   YG L + +                 +     L L
Sbjct: 85  NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDL 144

Query: 50  KHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH 109
           +  L  +  +   +A+L     +  + R+     IL     + K+ DF L+  I     +
Sbjct: 145 EDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY 201

Query: 110 ITDT-VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFS 168
           +        + + APE +   V+  +S+V+S+ +FL+EL +                   
Sbjct: 202 VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLG----------------- 244

Query: 169 EYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK 228
               + +           ++ E    +  E        +   C    P  RP+   + + 
Sbjct: 245 ---SSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQL 301

Query: 229 LRQI 232
           + + 
Sbjct: 302 IEKQ 305

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 2e-29
 Identities = 44/248 (17%), Positives = 96/248 (38%), Gaps = 36/248 (14%)

Query: 1   QMSHNHILKLIGCCLETPIPI-LVFESVQYGTLWDRI-----------LGAPQPHFEPLL 48
              H +++ L+G C +   P+ ++ E  ++G L   +           +     + + L 
Sbjct: 73  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLT 132

Query: 49  LKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET 108
           L+H +  +  +   + +L     R  + R+     IL +E+NV K+ DF L+  I +   
Sbjct: 133 LEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 189

Query: 109 HI-TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPF 167
           ++        L + APE +   V+  +S+V+SF V L+E+ +                  
Sbjct: 190 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLG---------------- 233

Query: 168 SEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK 227
                + +   +  E     + E       +       Q   +C    P+ RP+  ++ +
Sbjct: 234 ----ASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVE 289

Query: 228 KLRQIYRS 235
            L  + ++
Sbjct: 290 HLGNLLQA 297

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (272), Expect = 4e-29
 Identities = 42/239 (17%), Positives = 89/239 (37%), Gaps = 32/239 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q  H +++ L G   ++   +++ E ++ G+L   +                + +   I 
Sbjct: 83  QFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTV----IQLVGMLRGIA 138

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDT----VMG 116
             + YL        V R+     IL N   V K+ DF LS  + +  +  T T       
Sbjct: 139 AGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKI 195

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFE 176
            + + APE ++   F   S+V+S+ + ++E+++                    Y +  + 
Sbjct: 196 PIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS--------------------YGERPYW 235

Query: 177 DNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
           D    ++++ I  +D           A  Q+  +C +     RP    +   L ++ R+
Sbjct: 236 DMTNQDVINAI-EQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRN 293

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 4e-29
 Identities = 36/226 (15%), Positives = 80/226 (35%), Gaps = 32/226 (14%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           +  + +I+  +   L      +V E +  G+L D +                  +  + +
Sbjct: 73  ENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMD------EGQIAAVCRECL 126

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            AL +LH      ++ R+ K+  IL   +   KL DF     I   ++  + T++GT  +
Sbjct: 127 QALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRS-TMVGTPYW 182

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            APE +    +  K +++S  +   E++ G                     +  + +   
Sbjct: 183 MAPEVVTRKAYGPKVDIWSLGIMAIEMIEG---------------------EPPYLNENP 221

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQ-VTFECIKDSPADRPSMVDV 225
              +  I       ++  ++L A  +     C+      R S  ++
Sbjct: 222 LRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKEL 267

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 1e-28
 Identities = 36/235 (15%), Positives = 87/235 (37%), Gaps = 30/235 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + + H+ +L+G CL + + ++  + + +G L D +             ++ L   + I 
Sbjct: 67  SVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGS----QYLLNWCVQIA 121

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLG 119
             + YL     R +V R+     +L       K+ DF L+  +   E  +  +     + 
Sbjct: 122 KGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK 178

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
           + A E +   ++  +S+V+S+ V ++EL+T                    +    ++   
Sbjct: 179 WMALESILHRIYTHQSDVWSYGVTVWELMT--------------------FGSKPYDGIP 218

Query: 180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR 234
            +EI   +   +         +     +  +C       RP   ++  +  ++ R
Sbjct: 219 ASEISSILEKGERLPQPPICTIDV-YMIMVKCWMIDADSRPKFRELIIEFSKMAR 272

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 2e-28
 Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 28/229 (12%)

Query: 1   QMSHNHILKLIGCCLETP--IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMD 58
           ++ H +I++     ++       +V E  + G L   I    +   + L  +  L++   
Sbjct: 59  ELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKER-QYLDEEFVLRVMTQ 117

Query: 59  IVHALAYLH--FGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMG 116
           +  AL   H        ++ R+ K + +  + +   KL DF L+  +    +      +G
Sbjct: 118 LTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSF-AKAFVG 176

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFE 176
           T  Y +PE M    +NEKS+++S    L+EL                           F 
Sbjct: 177 TPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCAL---------------------MPPFT 215

Query: 177 DNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV 225
                E+   I       I          ++    +      RPS+ ++
Sbjct: 216 AFSQKELAGKIREGKFRRIPYRYSDEL-NEIITRMLNLKDYHRPSVEEI 263

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 2e-28
 Identities = 45/240 (18%), Positives = 95/240 (39%), Gaps = 32/240 (13%)

Query: 1   QMSHNHILKLIGCCLETP-IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDI 59
             SH ++L L+G CL +   P++V   +++G L +      +       +K  +   + +
Sbjct: 84  DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNF----IRNETHNPTVKDLIGFGLQV 139

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE---THITDTVMG 116
              + +L     +  V R+      + +E+   K+ DF L+  + + E    H       
Sbjct: 140 AKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKL 196

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFE 176
            + + A E ++T  F  KS+V+SF V L+EL+T                         + 
Sbjct: 197 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRG--------------------APPYP 236

Query: 177 DNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL 236
           D    +I  ++ ++    ++ E       +V  +C       RPS  ++  ++  I+ + 
Sbjct: 237 DVNTFDITVYL-LQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF 295

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  106 bits (266), Expect = 3e-28
 Identities = 44/228 (19%), Positives = 79/228 (34%), Gaps = 37/228 (16%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H + ++  GC L      LV E           +     H +PL       +    +
Sbjct: 71  KLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEV-----HKKPLQEVEIAAVTHGAL 125

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             LAYLH      ++ R+ K   IL +E  + KL DF  +  +        ++ +GT  +
Sbjct: 126 QGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP-----ANSFVGTPYW 177

Query: 121 CAPEY---MRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFED 177
            APE    M  G ++ K +V+S  +   EL                        K    +
Sbjct: 178 MAPEVILAMDEGQYDGKVDVWSLGITCIELAER---------------------KPPLFN 216

Query: 178 NRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV 225
                 + HI   +  +++              C++  P DRP+   +
Sbjct: 217 MNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVL 264

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 5e-28
 Identities = 39/231 (16%), Positives = 81/231 (35%), Gaps = 35/231 (15%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
              H +I+KL+          ++ E    G +   +L        PL       +    +
Sbjct: 65  SCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLE----LERPLTESQIQVVCKQTL 120

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            AL YLH      I+ R+ K   ILF  +   KL DF +S           D+ +GT  +
Sbjct: 121 DALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQR-RDSFIGTPYW 176

Query: 121 CAPEYMRT-----GVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCF 175
            APE +         ++ K++V+S  + L E+                        +   
Sbjct: 177 MAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEI---------------------EPPH 215

Query: 176 EDNRFTEIVDHIVVEDVSSIEKEQQLHASAQ-VTFECIKDSPADRPSMVDV 225
            +     ++  I   +  ++ +  +  ++ +    +C++ +   R +   +
Sbjct: 216 HELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQL 266

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 6e-28
 Identities = 52/232 (22%), Positives = 84/232 (36%), Gaps = 29/232 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q  H HI+KLIG   E P+ I + E    G L        Q     L L   +  A  + 
Sbjct: 64  QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSF----LQVRKYSLDLASLILYAYQLS 118

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            ALAYL     +  V R+     +L +  +  KL DF LS  + +   +        + +
Sbjct: 119 TALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 175

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRF 180
            APE +    F   S+V+ F V ++E+L            +D++           E+   
Sbjct: 176 MAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVI--------GRIENGER 227

Query: 181 TEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
             +  +      S + K             C    P+ RP   ++  +L  I
Sbjct: 228 LPMPPNCPPTLYSLMTK-------------CWAYDPSRRPRFTELKAQLSTI 266

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 3e-27
 Identities = 47/240 (19%), Positives = 84/240 (35%), Gaps = 37/240 (15%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEP-----------LLLKHR 52
           H +I+ L+G C       L  E   +G L D +  +     +P           L  +  
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 129

Query: 53  LKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITD 112
           L  A D+   + YL     +  + R+     IL  E  VAK+ DF LS            
Sbjct: 130 LHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK--KT 184

Query: 113 TVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLK 172
                + + A E +   V+   S+V+S+ V L+E+++            +L     E L 
Sbjct: 185 MGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY----EKLP 240

Query: 173 NCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
             +   +     D +                   +  +C ++ P +RPS   +   L ++
Sbjct: 241 QGYRLEKPLNCDDEV-----------------YDLMRQCWREKPYERPSFAQILVSLNRM 283

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 4e-27
 Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 30/229 (13%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            ++H +++K  G   E  I  L  E    G L+DRI          +      +    ++
Sbjct: 59  MLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE-----PDIGMPEPDAQRFFHQLM 113

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI-PEGETHITDTVMGTLG 119
             + YLH      I  R+ K   +L +E +  K+ DF L+          + + + GTL 
Sbjct: 114 AGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLP 170

Query: 120 YCAPEYMRTGVFN-EKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDN 178
           Y APE ++   F+ E  +V+S  + L  +L G       +   D      +   +  E  
Sbjct: 171 YVAPELLKRREFHAEPVDVWSCGIVLTAMLAG-------ELPWDQPSDSCQEYSDWKEKK 223

Query: 179 RFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK 227
            +      I    ++ + K              + ++P+ R ++ D+ K
Sbjct: 224 TYLNPWKKIDSAPLALLHK-------------ILVENPSARITIPDIKK 259

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-26
 Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 30/237 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q SH++I++L G   +    +++ E ++ G L   +            +   + +   I 
Sbjct: 65  QFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLRE----KDGEFSVLQLVGMLRGIA 120

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGTL 118
             + YL        V R+     IL N   V K+ DF LS  + +    T+ T      +
Sbjct: 121 AGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPI 177

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDN 178
            + APE +    F   S+V+SF + ++E++T  +        H+++    + + + F   
Sbjct: 178 RWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVM----KAINDGFRLP 233

Query: 179 RFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS 235
              +    I                  Q+  +C +   A RP   D+   L ++ R+
Sbjct: 234 TPMDCPSAI-----------------YQLMMQCWQQERARRPKFADIVSILDKLIRA 273

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 2e-26
 Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 35/230 (15%)

Query: 1   QMSHNHILKLIGCCLET----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIA 56
            + H +I++       T       +LV E +  GTL   +       F+ + +K      
Sbjct: 64  GLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYL-----KRFKVMKIKVLRSWC 118

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVM 115
             I+  L +LH   P PI+ R+ K   I         K+ D  L+             V+
Sbjct: 119 RQILKGLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLATLK---RASFAKAVI 174

Query: 116 GTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCF 175
           GT  + APE      ++E  +V++F + + E+ T                P+S       
Sbjct: 175 GTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATS-------------EYPYS------- 213

Query: 176 EDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV 225
           E     +I   +      +   +  +    ++   CI+ +  +R S+ D+
Sbjct: 214 ECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDL 263

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 6e-26
 Identities = 43/242 (17%), Positives = 84/242 (34%), Gaps = 36/242 (14%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTLWDRI-----------LGAPQPHFEPLLLKH 51
            H +I+ L+G C +     ++ E    G L + +                   E L  K 
Sbjct: 77  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 136

Query: 52  RLKIAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHI- 110
            +  A  +   + YL     +  + R+     +L  E+NV K+ DF L+  I   + +  
Sbjct: 137 LVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 193

Query: 111 TDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEY 170
           T      + + APE +   ++  +S+V+SF V L+E+ T                     
Sbjct: 194 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLG------------------- 234

Query: 171 LKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLR 230
             + +      E+   +                   +  +C    P+ RP+   + + L 
Sbjct: 235 -GSPYPGVPVEELFKLLKEGHRMDKPSNCTNEL-YMMMRDCWHAVPSQRPTFKQLVEDLD 292

Query: 231 QI 232
           +I
Sbjct: 293 RI 294

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 7e-26
 Identities = 41/238 (17%), Positives = 96/238 (40%), Gaps = 30/238 (12%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRI-----LGAPQPHFEPLLLKHRLKI 55
           + + +H+++L+G   +    +++ E +  G L   +       A  P   P  L   +++
Sbjct: 79  EFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQM 138

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-THITDTV 114
           A +I   +AYL+       V R+      +  E+   K+ DF ++  I E +        
Sbjct: 139 AGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKG 195

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNC 174
           +  + + +PE ++ GVF   S+V+SF V L+E+ T                      +  
Sbjct: 196 LLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLA--------------------EQP 235

Query: 175 FEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI 232
           ++     +++  ++   +             ++   C + +P  RPS +++   +++ 
Sbjct: 236 YQGLSNEQVLRFVMEGGLLDKPDNCPDML-FELMRMCWQYNPKMRPSFLEIISSIKEE 292

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (247), Expect = 1e-25
 Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 9/151 (5%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H   +KL     +           + G L   I                     +IV
Sbjct: 64  RLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI-----RKIGSFDETCTRFYTAEIV 118

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLS-ISIPEGETHITDTVMGTLG 119
            AL YLH    + I+ R+ K   IL NE+   ++ DF  + +  PE +    ++ +GT  
Sbjct: 119 SALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQ 175

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           Y +PE +      + S++++    +++L+ G
Sbjct: 176 YVSPELLTEKSACKSSDLWALGCIIYQLVAG 206

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 95.1 bits (236), Expect = 1e-23
 Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 11/152 (7%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            + H  ++ L     +    ++++E +  G L++++          +     ++    + 
Sbjct: 79  VLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNK----MSEDEAVEYMRQVC 134

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFN--EENVAKLFDFSLSISIPEGETHITDTVMGTL 118
             L ++H       V  + K   I+F     N  KL DF L+  +   ++       GT 
Sbjct: 135 KGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV--KVTTGTA 189

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            + APE          ++++S  V  + LL+G
Sbjct: 190 EFAAPEVAEGKPVGYYTDMWSVGVLSYILLSG 221

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 94.4 bits (234), Expect = 3e-23
 Identities = 29/152 (19%), Positives = 57/152 (37%), Gaps = 11/152 (7%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           Q+ H  ++ L     +    +L+ E +  G L+DRI          +     +       
Sbjct: 82  QLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAA----EDYKMSEAEVINYMRQAC 137

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILF--NEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
             L ++H      IV  + K   I+    + +  K+ DF L+  +   E         T 
Sbjct: 138 EGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI--VKVTTATA 192

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            + APE +        +++++  V  + LL+G
Sbjct: 193 EFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG 224

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 92.5 bits (229), Expect = 4e-23
 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 38/243 (15%)

Query: 1   QMSHNHILKLIGCCLET----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIA 56
            ++H  I+ +           P+P +V E V   TL D +         P+  K  +++ 
Sbjct: 63  ALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIV-----HTEGPMTPKRAIEVI 117

Query: 57  MDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHI--TDTV 114
            D   AL + H      I+ R+ K + I+ +  N  K+ DF ++ +I +    +  T  V
Sbjct: 118 ADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAV 174

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNC 174
           +GT  Y +PE  R    + +S+V+S    L+E+LTG                     +  
Sbjct: 175 IGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTG---------------------EPP 213

Query: 175 FEDNRFTEIVDHIVVED-VSSIEKEQQLHASAQ-VTFECIKDSPADRP-SMVDVAKKLRQ 231
           F  +    +    V ED +    + + L A    V  + +  +P +R  +  ++   L +
Sbjct: 214 FTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVR 273

Query: 232 IYR 234
           ++ 
Sbjct: 274 VHN 276

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.2 bits (223), Expect = 5e-22
 Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 15/183 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
              H  +  +            V E +  G L   I            L      A +I+
Sbjct: 59  AWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQ-----SCHKFDLSRATFYAAEII 113

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             L +LH    + IV+R+ K   IL +++   K+ DF +      G+     T  GT  Y
Sbjct: 114 LGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTN-TFCGTPDY 169

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG------WDVSDLVKDVHDLVCPFSEYLKNC 174
            APE +    +N   + +SF V L+E+L G       D  +L   +      +  +L+  
Sbjct: 170 IAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKE 229

Query: 175 FED 177
            +D
Sbjct: 230 AKD 232

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.7 bits (222), Expect = 6e-22
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H +I+ L           L+ + V  G L+DRI+            +   ++   ++
Sbjct: 63  KIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIV-----EKGFYTERDASRLIFQVL 117

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            A+ YLH         +         +E++   + DF LS     G      T  GT GY
Sbjct: 118 DAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSV--LSTACGTPGY 175

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            APE +    +++  + +S  V  + LL G
Sbjct: 176 VAPEVLAQKPYSKAVDCWSIGVIAYILLCG 205

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.7 bits (222), Expect = 9e-22
 Identities = 34/229 (14%), Positives = 80/229 (34%), Gaps = 34/229 (14%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
              H +IL L          +++FE +    +++RI          L  +  +     + 
Sbjct: 57  IARHRNILHLHESFESMEELVMIFEFISGLDIFERI----NTSAFELNEREIVSYVHQVC 112

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILF--NEENVAKLFDFSLSISIPEGETHITDTVMGTL 118
            AL +LH      I   + +   I++     +  K+ +F  +  +  G+      +    
Sbjct: 113 EALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN--FRLLFTAP 167

Query: 119 GYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDN 178
            Y APE  +  V +  ++++S    ++ LL+G                      N F   
Sbjct: 168 EYYAPEVHQHDVVSTATDMWSLGTLVYVLLSG---------------------INPFLAE 206

Query: 179 RFTEIVDHIVVEDVSSIEKE-QQLHASAQ-VTFECIKDSPADRPSMVDV 225
              +I+++I+  + +  E+  +++   A       +      R +  + 
Sbjct: 207 TNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEA 255

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.6 bits (211), Expect = 4e-20
 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 12/151 (7%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
                 I+ +            + + +  G L   +                   A +I+
Sbjct: 63  TGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHL-----SQHGVFSEADMRFYAAEII 117

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             L ++H    R +V+R+ K + IL +E    ++ D  L+    + + H +   +GT GY
Sbjct: 118 LGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---VGTHGY 171

Query: 121 CAPEYMRTGV-FNEKSNVFSFSVFLFELLTG 150
            APE ++ GV ++  ++ FS    LF+LL G
Sbjct: 172 MAPEVLQKGVAYDSSADWFSLGCMLFKLLRG 202

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 83.0 bits (204), Expect = 2e-19
 Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 16/232 (6%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H++I+KL          +LVFE +         +         L         + ++
Sbjct: 56  ELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDV-----CEGGLESVTAKSFLLQLL 110

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
           + +AY H    R ++ R+ K   +L N E   K+ DF L+ +        T  ++     
Sbjct: 111 NGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYR 167

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGW-------DVSDLVKDVHDLVCPFSEYLKN 173
                M +  ++   +++S      E++ G        +   L++    L  P S+   N
Sbjct: 168 APDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPN 227

Query: 174 CFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV 225
             E  ++             S  K         ++ + +K  P  R +    
Sbjct: 228 VTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLS-KMLKLDPNQRITAKQA 278

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 82.4 bits (203), Expect = 2e-19
 Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 16/154 (10%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
            H +I++L           LVF+ ++ G L+D +          L  K   KI   ++  
Sbjct: 68  GHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYL-----TEKVTLSEKETRKIMRALLEV 122

Query: 63  LAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCA 122
           +  LH      IV R+ K   IL +++   KL DF  S  +  GE      V GT  Y A
Sbjct: 123 ICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK--LREVCGTPSYLA 177

Query: 123 PEYMRTGV------FNEKSNVFSFSVFLFELLTG 150
           PE +   +      + ++ +++S  V ++ LL G
Sbjct: 178 PEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAG 211

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (202), Expect = 3e-19
 Identities = 39/230 (16%), Positives = 76/230 (33%), Gaps = 10/230 (4%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLL-LKHRLKIAMDI 59
              H ++++L   C  +        ++ +  +   +        EP +  +    +   +
Sbjct: 66  TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQL 125

Query: 60  VHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLG 119
           +  L +LH      +V R+ K   IL       KL DF L+            +V+ TL 
Sbjct: 126 LRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMAL--TSVVVTLW 180

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNR 179
           Y APE +    +    +++S      E+     +     DV  L            ED  
Sbjct: 181 YRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWP 240

Query: 180 FTEIVDHIVVEDVSSIEKEQQLHASAQVTFE----CIKDSPADRPSMVDV 225
               +        S+   E+ +    ++  +    C+  +PA R S    
Sbjct: 241 RDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 290

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 3e-19
 Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 37/231 (16%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H +++ L          IL+ E V  G L+D          E L  +   +    I+
Sbjct: 69  EIQHPNVITLHEVYENKTDVILILELVAGGELFD-----FLAEKESLTEEEATEFLKQIL 123

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVA----KLFDFSLSISIPEGETHITDTVMG 116
           + + YLH      I   + K   I+  + NV     K+ DF L+  I  G       + G
Sbjct: 124 NGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE--FKNIFG 178

Query: 117 TLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFE 176
           T  + APE +       +++++S  V  + LL+G                      + F 
Sbjct: 179 TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG---------------------ASPFL 217

Query: 177 DNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTF--ECIKDSPADRPSMVDV 225
            +   E + ++   +    ++     ++    F    +   P  R ++ D 
Sbjct: 218 GDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDS 268

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 9e-19
 Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 30/231 (12%)

Query: 2   MSHNHILKLIGCC----LETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAM 57
               HI++++             ++V E +  G L+ RI        +    +   +I  
Sbjct: 62  SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQ---DRGDQAFTEREASEIMK 118

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEEN---VAKLFDFSLSISIPEGETHITDTV 114
            I  A+ YLH      I  R+ K   +L+  +    + KL DF  +       +    T 
Sbjct: 119 SIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL--TTP 173

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKNC 174
             T  Y APE +    +++  +++S  V ++ LL G+         H L        +  
Sbjct: 174 CYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGY---PPFYSNHGLAISPGMKTRIR 230

Query: 175 FEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV 225
                F       V E+V  + +              +K  P  R ++ + 
Sbjct: 231 MGQYEFPNPEWSEVSEEVKMLIR------------NLLKTEPTQRMTITEF 269

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 2e-18
 Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 17/232 (7%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++SH +I+ L+          LVF+ ++            + +   L   H     +  +
Sbjct: 56  ELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVII-----KDNSLVLTPSHIKAYMLMTL 110

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             L YLH      I+ R+ K + +L +E  V KL DF L+ S        T  V  T  Y
Sbjct: 111 QGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQV-VTRWY 166

Query: 121 CAPE-YMRTGVFNEKSNVFSFSVFLFELLTGW------DVSDLVKDVHDLVCPFSEYLKN 173
            APE      ++    ++++    L ELL            D +  + + +   +E    
Sbjct: 167 RAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWP 226

Query: 174 CFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV 225
                             +  I           +       +P  R +    
Sbjct: 227 DMCSLPDYVTFKSFPGIPLHHIFSAAGDDL-LDLIQGLFLFNPCARITATQA 277

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 2e-18
 Identities = 35/232 (15%), Positives = 72/232 (31%), Gaps = 15/232 (6%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           +++H +I+KL+          LVFE +                   + L         ++
Sbjct: 57  ELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDAS----ALTGIPLPLIKSYLFQLL 112

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             LA+ H      ++ R+ K   +L N E   KL DF L+ +        T  V+     
Sbjct: 113 QGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 169

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTGW-------DVSDLVKDVHDLVCPFSEYLKN 173
                +    ++   +++S      E++T         ++  L +    L  P       
Sbjct: 170 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG 229

Query: 174 CFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV 225
                 +         +D S +         + ++ + +   P  R S    
Sbjct: 230 VTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLS-QMLHYDPNKRISAKAA 280

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.9 bits (196), Expect = 2e-18
 Identities = 33/243 (13%), Positives = 65/243 (26%), Gaps = 32/243 (13%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
               I  +  C  E    ++V E +                     LK  L +A  ++  
Sbjct: 61  GGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNF-----CSRKFSLKTVLLLADQMISR 115

Query: 63  LAYLHFGFPRPIVFRNFKTSCILFNEENVAKL---FDFSLSISIPEGETHI------TDT 113
           + Y+H    +  + R+ K    L        L    DF L+    +  TH          
Sbjct: 116 IEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKN 172

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYLKN 173
           + GT  Y +         + + ++ S    L     G             +   ++  K 
Sbjct: 173 LTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLG-------SLPWQGLKAATKRQKY 225

Query: 174 CFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY 233
                +       ++ +   S          A     C      D+P    + +  R ++
Sbjct: 226 ERISEKKMSTPIEVLCKGYPS--------EFATYLNFCRSLRFDDKPDYSYLRQLFRNLF 277

Query: 234 RSL 236
              
Sbjct: 278 HRQ 280

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.2 bits (192), Expect = 9e-18
 Identities = 34/150 (22%), Positives = 69/150 (46%), Gaps = 12/150 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            ++H  I+++ G   +     ++ + ++ G L+           +          A ++ 
Sbjct: 60  IVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSL-----LRKSQRFPNPVAKFYAAEVC 114

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            AL YLH    + I++R+ K   IL ++    K+ DF  +  +P+       T+ GT  Y
Sbjct: 115 LALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY----TLCGTPDY 167

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            APE + T  +N+  + +SF + ++E+L G
Sbjct: 168 IAPEVVSTKPYNKSIDWWSFGILIYEMLAG 197

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 77.9 bits (191), Expect = 1e-17
 Identities = 29/248 (11%), Positives = 65/248 (26%), Gaps = 34/248 (13%)

Query: 3   SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHA 62
               I  +     E    +LV + +  G   + +L      F     K     A  ++  
Sbjct: 59  GCTGIPNVYYFGQEGLHNVLVIDLL--GPSLEDLLDLCGRKFSV---KTVAMAAKQMLAR 113

Query: 63  LAYLHFGFPRPIVFRNFKTSCILFNE-----ENVAKLFDFSLSISIPEGETHI------T 111
           +  +H    + +V+R+ K    L         N+  + DF +     +  T         
Sbjct: 114 VQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREK 170

Query: 112 DTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVHDLVCPFSEYL 171
             + GT  Y +         + + ++ +        L G      +K   +      E +
Sbjct: 171 KNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKY--ERI 228

Query: 172 KNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ 231
               +     E+      E    +                   +    P    +     +
Sbjct: 229 GEKKQSTPLRELCAGFPEEFYKYMHY-------------ARNLAFDATPDYDYLQGLFSK 275

Query: 232 IYRSLSCN 239
           +   L+  
Sbjct: 276 VLERLNTT 283

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 1e-17
 Identities = 34/214 (15%), Positives = 76/214 (35%), Gaps = 25/214 (11%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
            + +++L+         +L+ E  +        +         L  +        ++ A+
Sbjct: 68  FSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGA----LQEELARSFFWQVLEAV 123

Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLGYCA 122
            + H      ++ R+ K   IL +      KL DF     + +          GT  Y  
Sbjct: 124 RHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT---DFDGTRVYSP 177

Query: 123 PEYMRTG-VFNEKSNVFSFSVFLFELLTG----WDVSDLVKDVHDLVCPFSEYLKN---- 173
           PE++R        + V+S  + L++++ G        ++++         S   ++    
Sbjct: 178 PEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRW 237

Query: 174 CFEDN---RFT--EIVDHIVVEDVSSIEKEQQLH 202
           C       R T  EI +H  ++DV   ++  ++H
Sbjct: 238 CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIH 271

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 2e-17
 Identities = 35/238 (14%), Positives = 80/238 (33%), Gaps = 19/238 (7%)

Query: 1   QMSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLK 54
           ++ H +I++L      +          LV + V       R+        + L + +   
Sbjct: 69  KLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPET--VYRVARHYSRAKQTLPVIYVKL 126

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEEN-VAKLFDFSLSISIPEGETHITDT 113
               +  +LAY+H      I  R+ K   +L + +  V KL DF  +  +  GE +++  
Sbjct: 127 YMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS-Y 182

Query: 114 VMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG------WDVSDLVKDVHDLVCPF 167
           +                +    +V+S    L ELL G          D + ++  ++   
Sbjct: 183 ICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTP 242

Query: 168 SEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV 225
           +         N        I     + + + +    +  +    ++ +P  R + ++ 
Sbjct: 243 TREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEA 300

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 6e-17
 Identities = 33/232 (14%), Positives = 67/232 (28%), Gaps = 15/232 (6%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           ++ H +I++L           LVFE                     L  +        ++
Sbjct: 57  ELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKY-----FDSCNGDLDPEIVKSFLFQLL 111

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
             L + H    R ++ R+ K   +L N     KL +F L+ +        +  V+     
Sbjct: 112 KGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYR 168

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG-------WDVSDLVKDVHDLVCPFSEYLKN 173
                    +++   +++S      EL           DV D +K +  L+   +E    
Sbjct: 169 PPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWP 228

Query: 174 CFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV 225
                   +                +       +    +K +P  R S  + 
Sbjct: 229 SMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA 280

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 2e-16
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 9/150 (6%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
              H  +  L            V E    G L+  +             +       +IV
Sbjct: 61  NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-----RERVFTEERARFYGAEIV 115

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
            AL YLH    R +V+R+ K   ++ +++   K+ DF L             T  GT  Y
Sbjct: 116 SALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT-MKTFCGTPEY 171

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            APE +    +    + +   V ++E++ G
Sbjct: 172 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCG 201

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 3e-16
 Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 26/241 (10%)

Query: 1   QMSHNHILKLIGCCLETPIP-----ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKI 55
           +  H +I+ +        I       LV   +  G    ++L       + L   H    
Sbjct: 62  RFRHENIIGINDIIRAPTIEQMKDVYLVTHLM--GADLYKLL-----KTQHLSNDHICYF 114

Query: 56  AMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHIT--DT 113
              I+  L Y+H      ++ R+ K S +L N     K+ DF L+        H      
Sbjct: 115 LYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTE 171

Query: 114 VMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTG------WDVSDLVKDVHDLVCP 166
            + T  Y APE M     + +  +++S    L E+L+           D +  +  ++  
Sbjct: 172 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGS 231

Query: 167 FSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTF--ECIKDSPADRPSMVD 224
            S+   NC  + +    +  +  ++     +      S  +    + +  +P  R  +  
Sbjct: 232 PSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQ 291

Query: 225 V 225
            
Sbjct: 292 A 292

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 4e-15
 Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 10/149 (6%)

Query: 4   HNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHAL 63
              ++ L           L+ + +  G L+  +        E            +IV AL
Sbjct: 88  SPFLVTLHYAFQTETKLHLILDYINGGELFTHL-----SQRERFTEHEVQIYVGEIVLAL 142

Query: 64  AYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAP 123
            +LH      I++R+ K   IL +      L DF LS      ET       GT+ Y AP
Sbjct: 143 EHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAP 199

Query: 124 EYMRTGV--FNEKSNVFSFSVFLFELLTG 150
           + +R G    ++  + +S  V ++ELLTG
Sbjct: 200 DIVRGGDSGHDKAVDWWSLGVLMYELLTG 228

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 3e-14
 Identities = 34/241 (14%), Positives = 78/241 (32%), Gaps = 19/241 (7%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQY---GTLWDRILGAPQPHFEPLLLKHRLKIAM 57
            + H +++ LI  C     P    +   Y         + G          L    ++  
Sbjct: 65  LLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQ 124

Query: 58  DIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET---HITDTV 114
            +++ L Y+H      I+ R+ K + +L   + V KL DF L+ +    +    +     
Sbjct: 125 MLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNR 181

Query: 115 MGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGW------DVSDLVKDVHDLVCPF 167
           + TL Y  PE +     +    +++     + E+ T             +  +  L    
Sbjct: 182 VVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSI 241

Query: 168 SEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVT---FECIKDSPADRPSMVD 224
           +  +    ++    E ++ +  +     ++ +             + +   PA R    D
Sbjct: 242 TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDD 301

Query: 225 V 225
            
Sbjct: 302 A 302

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 1e-13
 Identities = 32/239 (13%), Positives = 77/239 (32%), Gaps = 27/239 (11%)

Query: 1   QMSHNHILKLIGCCLETPIP------ILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLK 54
            M H +++ L+                LV   +  GT   +++       E L       
Sbjct: 73  HMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM--GTDLGKLM-----KHEKLGEDRIQF 125

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           +   ++  L Y+H      I+ R+ K   +  NE+   K+ DF L+      ++ +T  V
Sbjct: 126 LVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQA---DSEMTGYV 179

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG------WDVSDLVKDVHDLVCPFS 168
           +          +    + +  +++S    + E++TG       D  D +K++  +     
Sbjct: 180 VTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPP 239

Query: 169 EYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTF--ECIKDSPADRPSMVDV 225
                  + +     +  +   +           +   V    + +      R +  + 
Sbjct: 240 AEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA 298

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.0 bits (160), Expect = 3e-13
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 12/150 (8%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
            ++   ++KL     +     +V E V  G ++  +              H    A  IV
Sbjct: 97  AVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL-----RRIGRFSEPHARFYAAQIV 151

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGY 120
               YLH      +++R+ K   +L +++   ++ DF  +  +         T+ GT   
Sbjct: 152 LTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW----TLCGTPEA 204

Query: 121 CAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
            APE + +  +N+  + ++  V ++E+  G
Sbjct: 205 LAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.4 bits (145), Expect = 2e-11
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 2   MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVH 61
           M  NHILKL+          +    V      + +    +     + L +  +I+  ++ 
Sbjct: 77  MGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLL 136

Query: 62  ALAYLHFGFPRPIVFRNFKTSCILFNEEN-VAKLFDFSLSISIPEGETHITDT-VMGTLG 119
            L Y+H      I+  + K   +L    +    L    ++            T  + T  
Sbjct: 137 GLDYMHRR--CGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTRE 194

Query: 120 YCAPEYMRTGVFNEKSNVFSFSVFLFELLTG 150
           Y +PE +    +   ++++S +  +FEL+TG
Sbjct: 195 YRSPEVLLGAPWGCGADIWSTACLIFELITG 225

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 33/193 (17%), Positives = 68/193 (35%), Gaps = 26/193 (13%)

Query: 1   QMSHNHILKLIGCCL------ETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLK 54
            ++H +I+ L+          E     LV E +         +            +    
Sbjct: 72  CVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDH--------ERMSY 123

Query: 55  IAMDIVHALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTV 114
           +   ++  + +LH      I+ R+ K S I+   +   K+ DF L+ +   G + +    
Sbjct: 124 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTA--GTSFMMTPY 178

Query: 115 MGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTG-------WDVSDLVKDVHDLVCPF 167
           + T  Y APE +    + E  +++S    + E++           +    K +  L  P 
Sbjct: 179 VVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPC 238

Query: 168 SEYLKNCFEDNRF 180
            E++K      R 
Sbjct: 239 PEFMKKLQPTVRN 251

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.1 bits (85), Expect = 9e-04
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 12/103 (11%)

Query: 1   QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIV 60
           +     + KL G  +           +                   + +++  ++   I+
Sbjct: 62  RNEFRALQKLQGLAVPKVYAWEGNAVLMELIDAK--------ELYRVRVENPDEVLDMIL 113

Query: 61  HALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISI 103
             +A  +    R IV  +     +L +EE +  + DF  S+ +
Sbjct: 114 EEVAKFY---HRGIVHGDLSQYNVLVSEEGI-WIIDFPQSVEV 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.66
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.49
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	96.9
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	95.79
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	95.21
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	87.87
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	85.11

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-51  Score=318.09  Aligned_cols=207  Identities=23%  Similarity=0.398  Sum_probs=157.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||+++|++.+++..++||||+++|+|.+++....    ..+++..+..++.|++.||.|||   +++|+|||||
T Consensus        56 ~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~~l~~~~----~~~~~~~~~~i~~qia~gl~~lH---~~~iiHrDlK  128 (263)
T d1sm2a_          56 KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQR----GLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLA  128 (263)
T ss_dssp             HCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTT----TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCTTCS
T ss_pred             hcCCCCcccccceeccCCceEEEEEecCCCcHHHHhhccc----cCCCHHHHHHHHHHHHHHHHhhh---ccceeecccc
Confidence            4799999999999999999999999999999999987653    56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.+||+|||+++..............||+.|+|||++.+..++.++||||||+++|||+|+..|+..... 
T Consensus       129 p~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~-  207 (263)
T d1sm2a_         129 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS-  207 (263)
T ss_dssp             GGGEEECGGGCEEECSCC------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCC-
T ss_pred             hhheeecCCCCeEecccchheeccCCCceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCC-
Confidence            9999999999999999999977644433333455689999999999999999999999999999999996554422111 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                                         ..+....+... .....+...++++.+++.+||+.||++|||++|+++.|+++.++
T Consensus       208 -------------------~~~~~~~i~~~-~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~es  262 (263)
T d1sm2a_         208 -------------------NSEVVEDISTG-FRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAES  262 (263)
T ss_dssp             -------------------HHHHHHHHHHT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHhc-CCCCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhC
Confidence                               11111111111 11111123456789999999999999999999999999998754

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-51  Score=319.14  Aligned_cols=211  Identities=22%  Similarity=0.371  Sum_probs=161.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++. .+..++||||+++|+|.+++....    ..+++..+..++.|++.||+|||   +++|+|||||
T Consensus        60 ~l~HpnIv~~~~~~~-~~~~~lv~Ey~~~g~L~~~l~~~~----~~~~~~~~~~i~~qi~~gl~yLH---~~~ivHrDlK  131 (276)
T d1uwha_          60 KTRHVNILLFMGYST-APQLAIVTQWCEGSSLYHHLHIIE----TKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLK  131 (276)
T ss_dssp             TCCCTTBCCEEEEEC-SSSCEEEEECCCEEEHHHHHHTSC----CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCCEeeeeEEEe-ccEEEEEEecCCCCCHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHh---cCCEeccccC
Confidence            579999999999875 456899999999999999997653    46899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccC---CcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTG---VFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~---~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+|||++.++.+||+|||+++...... ........||+.|+|||++.+.   .++.++|||||||++|||+||+.||..
T Consensus       132 p~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~  211 (276)
T d1uwha_         132 SNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSN  211 (276)
T ss_dssp             GGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             HHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCC
Confidence            999999999999999999987654322 2233456789999999998643   478999999999999999999999864


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      ........                 ..+......+.........++.+.++|.+||+.||.+|||++|+++.|+.+.+++
T Consensus       212 ~~~~~~~~-----------------~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~~  274 (276)
T d1uwha_         212 INNRDQII-----------------FMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSL  274 (276)
T ss_dssp             CCCHHHHH-----------------HHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred             CChHHHHH-----------------HHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHcC
Confidence            33211100                 0000000000000111244577899999999999999999999999999988754

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-50  Score=320.31  Aligned_cols=206  Identities=18%  Similarity=0.294  Sum_probs=159.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||+++|++.+++..++||||+++|+|.+++....    ..+++..++.++.|++.||.|||   +++++|||||
T Consensus        83 ~l~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~----~~l~~~~~~~i~~qia~gl~yLH---~~~iiHrDlK  155 (299)
T d1jpaa_          83 QFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQND----GQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLA  155 (299)
T ss_dssp             TCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTT----TCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCCCccEEEEEeeCCEEEEEEEecCCCcceeeecccc----CCCCHHHHHHHHHHHHHHHHHHh---hCCCccCccc
Confidence            5899999999999999999999999999999999887653    46899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc----eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH----ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSD  155 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~  155 (239)
                      |+|||++.++.+||+|||+++........    ......+|+.|+|||.+.+..++.++|||||||++|||+| |..||.
T Consensus       156 p~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~  235 (299)
T d1jpaa_         156 ARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYW  235 (299)
T ss_dssp             GGGEEECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             cceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCC
Confidence            99999999999999999999766432211    1223457899999999999999999999999999999998 788875


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                      ....                     .+....+..+ .....+...++.+.+++.+||+.||.+|||+.||++.|++++++
T Consensus       236 ~~~~---------------------~~~~~~i~~~-~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~  293 (299)
T d1jpaa_         236 DMTN---------------------QDVINAIEQD-YRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRN  293 (299)
T ss_dssp             TCCH---------------------HHHHHHHHTT-CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             CCCH---------------------HHHHHHHHcC-CCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcC
Confidence            4321                     1111111111 11111224567789999999999999999999999999998754

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-50  Score=319.29  Aligned_cols=207  Identities=22%  Similarity=0.368  Sum_probs=168.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||+++|+|.+++..++||||+++|+|.+++.....   ..+++..++.++.|++.||.|||   +++|+|||||
T Consensus        69 ~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~l~~~~~---~~~~~~~~~~i~~qi~~gL~yLH---~~~iiHrDlK  142 (287)
T d1opja_          69 EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNR---QEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLA  142 (287)
T ss_dssp             HCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCT---TTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             hCCCCCEecCCccEeeCCeeEEEeecccCcchHHHhhhccc---cchHHHHHHHHHHHHHHHHHHHH---HCCcccCccc
Confidence            37999999999999999999999999999999999976543   57899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.+||+|||+++..............|++.|+|||++.+..++.++||||||+++|||++|..|+....+ 
T Consensus       143 p~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~-  221 (287)
T d1opja_         143 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID-  221 (287)
T ss_dssp             GGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCC-
T ss_pred             cCeEEECCCCcEEEccccceeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcch-
Confidence            9999999999999999999987654443334445688999999999999999999999999999999998776532211 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                                         ..... ..+........+...++.+.+||.+||+.||.+|||++|+++.|+.+.+
T Consensus       222 -------------------~~~~~-~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~  275 (287)
T d1opja_         222 -------------------LSQVY-ELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ  275 (287)
T ss_dssp             -------------------HHHHH-HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTS
T ss_pred             -------------------HHHHH-HHHhcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence                               01111 1111111111223456789999999999999999999999999988754

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-50  Score=313.58  Aligned_cols=199  Identities=23%  Similarity=0.315  Sum_probs=160.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.+++..++||||+++|+|.+++...     ..+++..++.++.|++.||.|||   +++|+|||||
T Consensus        59 ~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~~~-----~~l~e~~~~~i~~qi~~al~ylH---~~~IiHrDiK  130 (271)
T d1nvra_          59 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-----IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIK  130 (271)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBTT-----TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred             hCCCCCEeeEeeeeccCceeEEEEeccCCCcHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHH---HcCCccCccc
Confidence            579999999999999999999999999999999999764     57999999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+|||++.++.+||+|||+++...... ........||+.|+|||++.+..+ +.++|||||||++|+|++|..||....
T Consensus       131 p~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~  210 (271)
T d1nvra_         131 PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS  210 (271)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSS
T ss_pred             HHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999998654322 222345679999999999988775 578999999999999999999986433


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......                    ................++++.+++.+||+.||++|||++|+++
T Consensus       211 ~~~~~~--------------------~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         211 DSCQEY--------------------SDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             TTSHHH--------------------HHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             hHHHHH--------------------HHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            211100                    0000000001111234567889999999999999999999875

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-50  Score=312.77  Aligned_cols=205  Identities=21%  Similarity=0.318  Sum_probs=165.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||+++|+|.+ +..++||||+++|+|.+++...     ..+++..+..++.||+.||.|||   +++|+|||||
T Consensus        64 ~l~HpnIv~~~g~~~~-~~~~lvmE~~~~g~L~~~l~~~-----~~l~~~~~~~i~~qi~~gl~ylH---~~~iiHrDlK  134 (277)
T d1xbba_          64 QLDNPYIVRMIGICEA-ESWMLVMEMAELGPLNKYLQQN-----RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLA  134 (277)
T ss_dssp             TCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHHHC-----TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hCCCCCCceEEEEecc-CCEEEEEEcCCCCcHHHHHhhc-----cCCCHHHHHHHHHHHHHHHhhHH---hCCcccCCCc
Confidence            5899999999999865 4578999999999999999876     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+|||++.++.+||+|||+++........  ......||+.|+|||++.+..++.++||||||+++|||++ |..||...
T Consensus       135 p~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~  214 (277)
T d1xbba_         135 ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM  214 (277)
T ss_dssp             GGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             chhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCC
Confidence            99999999999999999999876443322  2234568999999999999999999999999999999998 88888643


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      ..                     .+....+..+. ....+...++++.++|.+||+.||.+|||+++|++.|+..+.++
T Consensus       215 ~~---------------------~~~~~~i~~~~-~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~  271 (277)
T d1xbba_         215 KG---------------------SEVTAMLEKGE-RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV  271 (277)
T ss_dssp             CH---------------------HHHHHHHHTTC-CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             CH---------------------HHHHHHHHcCC-CCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHHhhc
Confidence            21                     11111111111 11112245678899999999999999999999999998876553

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-49  Score=309.86  Aligned_cols=193  Identities=22%  Similarity=0.408  Sum_probs=162.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.+++..++||||+++|+|.+++...     ..+++..++.++.||+.||+|||   +++|+|||||
T Consensus        62 ~l~hpnIv~~~~~~~~~~~~~ivmEy~~~g~L~~~l~~~-----~~l~e~~~~~i~~qi~~al~~lH---~~~ivHrDiK  133 (263)
T d2j4za1          62 HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL-----SKFDEQRTATYITELANALSYCH---SKRVIHRDIK  133 (263)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred             hcCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeeeec
Confidence            479999999999999999999999999999999999875     57899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.+||+|||++.......   .....||+.|+|||++.+..++.++|||||||++|+|++|..||....  
T Consensus       134 p~Nill~~~~~~kl~DFG~a~~~~~~~---~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~--  208 (263)
T d2j4za1         134 PENLLLGSAGELKIADFGWSVHAPSSR---RTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT--  208 (263)
T ss_dssp             GGGEEECTTSCEEECCCCSCSCCCCCC---CEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS--
T ss_pred             cccceecCCCCEeecccceeeecCCCc---ccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCC--
Confidence            999999999999999999997654322   345679999999999999999999999999999999999999985322  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                         ..+....+.......  +...++++.+++.+||+.||.+|||++|+++
T Consensus       209 -------------------~~~~~~~i~~~~~~~--p~~~s~~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         209 -------------------YQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             -------------------HHHHHHHHHTTCCCC--CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -------------------HHHHHHHHHcCCCCC--CccCCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence                               111111111111111  1234577899999999999999999999986

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-49  Score=312.69  Aligned_cols=196  Identities=18%  Similarity=0.245  Sum_probs=161.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.+.+..++||||+++|+|.+++..      ..+++..++.++.||+.||.|||   +++|+|||||
T Consensus        73 ~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~~~~------~~l~~~~~~~i~~qi~~aL~yLH---~~~iiHrDiK  143 (293)
T d1yhwa1          73 ENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE------TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIK  143 (293)
T ss_dssp             HCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHH------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCEeeEeEEEEECCEEEEEEEecCCCcHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCc
Confidence            37899999999999999999999999999999998865      45889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|||||||++|+|++|..||......
T Consensus       144 p~NILl~~~~~vkl~DFG~a~~~~~~~-~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~  222 (293)
T d1yhwa1         144 SDNILLGMDGSVKLTDFGFCAQITPEQ-SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL  222 (293)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSTT-CCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             HHHeEECCCCcEeeccchhheeecccc-ccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHH
Confidence            999999999999999999998764322 2234567999999999999999999999999999999999999998532211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhh-hcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIV-VEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           +...... ........+...++.++++|.+||+.||.+|||++|+++
T Consensus       223 ---------------------~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         223 ---------------------RALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             ---------------------HHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             ---------------------HHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                                 1111111 111111112245677899999999999999999999975

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-49  Score=313.55  Aligned_cols=207  Identities=23%  Similarity=0.370  Sum_probs=167.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||+++|++.+ +..++||||+++|+|.+++....    ..+++..+..++.|++.||+|||   +++++|||||
T Consensus        65 ~l~HpnIv~l~g~~~~-~~~~lvmE~~~~g~L~~~l~~~~----~~l~~~~~~~i~~qi~~gL~ylH---~~~iiHrDlK  136 (285)
T d1u59a_          65 QLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVGKR----EEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLA  136 (285)
T ss_dssp             HCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHTTCT----TTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCEeeEeeeecc-CeEEEEEEeCCCCcHHHHhhccc----cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCcCc
Confidence            4799999999999865 45789999999999999886543    56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.+||+|||+++.......  .......||+.|+|||++.+..++.++|||||||++|||+| |..||...
T Consensus       137 p~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~  216 (285)
T d1u59a_         137 ARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM  216 (285)
T ss_dssp             GGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             hhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999987644322  22334568899999999998999999999999999999998 88888643


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhhc
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSLS  237 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~~  237 (239)
                      ..                     .+....+..+. ....+...++++.++|.+||+.||++|||+.++++.|+..+.++.
T Consensus       217 ~~---------------------~~~~~~i~~~~-~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~~~  274 (285)
T d1u59a_         217 KG---------------------PEVMAFIEQGK-RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLA  274 (285)
T ss_dssp             CT---------------------HHHHHHHHTTC-CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             CH---------------------HHHHHHHHcCC-CCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHhh
Confidence            21                     11111111111 111123456788999999999999999999999999998887654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-50  Score=314.06  Aligned_cols=207  Identities=21%  Similarity=0.351  Sum_probs=166.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||+++|++.+ +..++||||+++|+|.+++.....   ..+++..++.++.||+.||.|||   +++|+|||||
T Consensus        64 ~l~HpnIv~~~g~~~~-~~~~iv~Ey~~~g~L~~~~~~~~~---~~l~~~~~~~i~~qi~~gl~~lH---~~~ivHrDiK  136 (272)
T d1qpca_          64 QLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG---IKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLR  136 (272)
T ss_dssp             HCCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHTTSHHH---HTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             hCCCCCEeEEEeeecc-CCeEEEEEeCCCCcHHHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccc
Confidence            4799999999998754 567899999999999998765422   35899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.+||+|||+++..............|++.|+|||++.+..++.++||||||+++|||+||..|+..... 
T Consensus       137 p~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~-  215 (272)
T d1qpca_         137 AANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT-  215 (272)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC-
T ss_pred             hhheeeecccceeeccccceEEccCCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCC-
Confidence            9999999999999999999987755444444456788999999999988999999999999999999997665432211 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                                         ..+....+... .....+...++.+.+++.+||+.||++|||++||++.|+++..+
T Consensus       216 -------------------~~~~~~~i~~~-~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~fts  270 (272)
T d1qpca_         216 -------------------NPEVIQNLERG-YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA  270 (272)
T ss_dssp             -------------------HHHHHHHHHTT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHhc-CCCCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhhc
Confidence                               11111111111 11111234567789999999999999999999999999998765

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-49  Score=307.09  Aligned_cols=195  Identities=19%  Similarity=0.306  Sum_probs=155.4

Q ss_pred             CCCCcccceeeEEEEe----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCC--e
Q 044155            1 QMSHNHILKLIGCCLE----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRP--I   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~--i   74 (239)
                      +++|||||++++++.+    ....++||||+++|+|.+++.+.     ..+++..++.++.||+.||+|||   +++  |
T Consensus        64 ~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~-----~~~~~~~~~~~~~qi~~gl~yLH---~~~~~I  135 (270)
T d1t4ha_          64 GLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF-----KVMKIKVLRSWCRQILKGLQFLH---TRTPPI  135 (270)
T ss_dssp             TCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---TSSSCC
T ss_pred             hCCCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHhcc-----ccccHHHHHHHHHHHHHHHHHHH---HCCCCE
Confidence            5899999999999875    34578999999999999999875     56899999999999999999999   777  9


Q ss_pred             eeccccCcceeec-CCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCC
Q 044155           75 VFRNFKTSCILFN-EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        75 ~H~dlk~~nil~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      +||||||+|||++ .++.+||+|||+++.....   ......||+.|+|||++.+ .++.++|||||||++|+|++|..|
T Consensus       136 iHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~---~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~P  211 (270)
T d1t4ha_         136 IHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS---FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYP  211 (270)
T ss_dssp             CCSCCCGGGEEESSTTSCEEECCTTGGGGCCTT---SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             EeCCcChhhceeeCCCCCEEEeecCcceeccCC---ccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCC
Confidence            9999999999996 4789999999999764332   2335679999999998875 689999999999999999999999


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      |....+..                    .....+..+..........++++.++|.+||+.||++|||++|+++
T Consensus       212 f~~~~~~~--------------------~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         212 YSECQNAA--------------------QIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             TTTCSSHH--------------------HHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCcccHH--------------------HHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence            85332111                    1111111111111112234466889999999999999999999986

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-49  Score=317.55  Aligned_cols=220  Identities=19%  Similarity=0.257  Sum_probs=163.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCC-CCeeeccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFP-RPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~-~~i~H~dl   79 (239)
                      +++|||||+++++|.+.+..++||||+++|+|.+++.+.     ..+++..+..++.|++.||.|||   + ++|+||||
T Consensus        60 ~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~L~~~l~~~-----~~l~~~~~~~~~~qil~aL~yLH---~~~~IiHRDi  131 (322)
T d1s9ja_          60 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA-----GRIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDV  131 (322)
T ss_dssp             GCCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCC
T ss_pred             hCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHH---HhCCEEcccc
Confidence            479999999999999999999999999999999999865     56899999999999999999999   6 48999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      ||+|||++.++.+||+|||+|......   ......||+.|+|||++.+..++.++||||+||++|||++|+.||.....
T Consensus       132 KP~NILl~~~~~vkl~DFGla~~~~~~---~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~  208 (322)
T d1s9ja_         132 KPSNILVNSRGEIKLCDFGVSGQLIDS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDA  208 (322)
T ss_dssp             SGGGEEECTTCCEEECCCCCCHHHHHH---TC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCT
T ss_pred             CHHHeeECCCCCEEEeeCCCccccCCC---ccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH
Confidence            999999999999999999998765321   23356799999999999999999999999999999999999999965332


Q ss_pred             cccccccchh---------------------hhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCC
Q 044155          160 VHDLVCPFSE---------------------YLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPAD  218 (239)
Q Consensus       160 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~  218 (239)
                      ..........                     ............+..................+.++.+++.+||..||.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~  288 (322)
T d1s9ja_         209 KELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAE  288 (322)
T ss_dssp             THHHHHC------------------------------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTT
T ss_pred             HHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhH
Confidence            1100000000                     0000000000111111111111111111123567899999999999999


Q ss_pred             CCCHHHHHH--HHHH
Q 044155          219 RPSMVDVAK--KLRQ  231 (239)
Q Consensus       219 Rps~~ell~--~L~~  231 (239)
                      |||++|+++  ++++
T Consensus       289 R~ta~e~L~Hpf~~~  303 (322)
T d1s9ja_         289 RADLKQLMVHAFIKR  303 (322)
T ss_dssp             SCCHHHHHTSHHHHH
T ss_pred             CcCHHHHhhCHhhCc
Confidence            999999987  5554

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-49  Score=314.43  Aligned_cols=205  Identities=20%  Similarity=0.331  Sum_probs=164.0

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC------------------CCCcCCHHHHHHHHHHHHHHHh
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP------------------HFEPLLLKHRLKIAMDIVHALA   64 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~------------------~~~~~~~~~~~~~~~~i~~~l~   64 (239)
                      +|||||++++++.+.+..++||||+++|+|.++++.....                  ....+++..++.++.|++.||+
T Consensus        99 ~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~  178 (325)
T d1rjba_          99 SHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGME  178 (325)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEeEEEEEEeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999865321                  1135789999999999999999


Q ss_pred             HHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhH
Q 044155           65 YLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVF  143 (239)
Q Consensus        65 ~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~  143 (239)
                      |||   +++|+||||||+||+++.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||+
T Consensus       179 yLH---~~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvi  255 (325)
T d1rjba_         179 FLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGIL  255 (325)
T ss_dssp             HHH---HTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHH---hCCeeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHH
Confidence            999   89999999999999999999999999999976543322 22345568999999999999999999999999999


Q ss_pred             HHHHhc-CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCH
Q 044155          144 LFELLT-GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSM  222 (239)
Q Consensus       144 l~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  222 (239)
                      +|||+| |..||.......                     .+...+........+...++++.+||.+||+.||++|||+
T Consensus       256 l~emlt~g~~Pf~~~~~~~---------------------~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~  314 (325)
T d1rjba_         256 LWEIFSLGVNPYPGIPVDA---------------------NFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSF  314 (325)
T ss_dssp             HHHHTTTSCCSSTTCCCSH---------------------HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHHHhCCCCCCCCCCHHH---------------------HHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCH
Confidence            999998 888886433111                     1111111111111122456779999999999999999999


Q ss_pred             HHHHHHHHH
Q 044155          223 VDVAKKLRQ  231 (239)
Q Consensus       223 ~ell~~L~~  231 (239)
                      +||++.|..
T Consensus       315 ~ei~~~L~~  323 (325)
T d1rjba_         315 PNLTSFLGC  323 (325)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            999999853

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-49  Score=310.72  Aligned_cols=198  Identities=20%  Similarity=0.264  Sum_probs=159.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.+.+..++||||+++|+|.+++.+..    ..+++..++.++.||+.||.|||   +++|+|||||
T Consensus        65 ~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L~~~~~~~~----~~l~e~~~~~i~~qi~~gL~ylH---~~~ivHrDiK  137 (288)
T d2jfla1          65 SCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELE----RPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLK  137 (288)
T ss_dssp             HCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCCCeEEEEEeeCCeEEEEEecCCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCEEEeecC
Confidence            4789999999999999999999999999999999876542    46899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccc-----cCCcccccchhhhhhHHHHHhcCCCCcc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMR-----TGVFNEKSNVFSFSVFLFELLTGWDVSD  155 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~~l~~~~~g~~p~~  155 (239)
                      |+|||++.++.+||+|||++...... ........||+.|+|||++.     ...++.++|||||||++|+|++|..||.
T Consensus       138 p~NIll~~~~~~Kl~DFG~a~~~~~~-~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~  216 (288)
T d2jfla1         138 AGNILFTLDGDIKLADFGVSAKNTRT-IQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHH  216 (288)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECHHH-HHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             hhheeECCCCCEEEEechhhhccCCC-cccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCC
Confidence            99999999999999999998654221 11233567899999999984     3457899999999999999999999986


Q ss_pred             cccccccccccchhhhhhhhhccchhhhhhhhhhcCC-CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          156 LVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV-SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .....                     +....+..... ....+...++++.+||.+||+.||.+|||++|+++
T Consensus       217 ~~~~~---------------------~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         217 ELNPM---------------------RVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             TSCGG---------------------GHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCCHH---------------------HHHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            43211                     11111111111 11112245678899999999999999999999986

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-49  Score=304.31  Aligned_cols=202  Identities=19%  Similarity=0.371  Sum_probs=166.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||++++|+|.+.+..++||||+++|+|.+++....    ..+++..+.+++.|++.||+|||   +.+|+|||||
T Consensus        55 ~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~l~~~~~~~~----~~~~~~~~~~i~~qi~~gl~~LH---~~~iiH~dlk  127 (258)
T d1k2pa_          55 NLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR----HRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLA  127 (258)
T ss_dssp             TCCCTTBCCEEEEECCSSSEEEEEECCTTEEHHHHHHSGG----GCCCHHHHHHHHHHHHHHHHHHH---HTTBCCSCCS
T ss_pred             hcCCCceeeEEEEEeeCCceEEEEEccCCCcHHHhhhccc----cCCcHHHHHHHHHHHHHHHHHHh---hcCccccccc
Confidence            5799999999999999999999999999999999876653    56889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||+++..............+|+.|+|||.+.+..++.++||||||+++|||+| |+.||+....
T Consensus       128 ~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~  207 (258)
T d1k2pa_         128 ARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN  207 (258)
T ss_dssp             GGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCH
T ss_pred             ceeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCH
Confidence            999999999999999999997665444333445668999999999999999999999999999999998 7888754321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                                           .+....+... .....+...++.+.++|.+||+.||++|||++++++.|.+
T Consensus       208 ---------------------~~~~~~i~~~-~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~d  257 (258)
T d1k2pa_         208 ---------------------SETAEHIAQG-LRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILD  257 (258)
T ss_dssp             ---------------------HHHHHHHHTT-CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHC
T ss_pred             ---------------------HHHHHHHHhC-CCCCCcccccHHHHHHHHHHccCCHhHCcCHHHHHHHhhC
Confidence                                 1111111111 1111223455789999999999999999999999998864

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-48  Score=307.12  Aligned_cols=206  Identities=22%  Similarity=0.281  Sum_probs=159.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||+++|++.+....++||||+.++++.+.+....    ..+++..+..++.|++.||.|||   +++|+|||||
T Consensus        65 ~l~H~nIv~~~g~~~~~~~~~~v~e~~~~~~l~~~~~~~~----~~~~~~~~~~i~~~i~~gl~~lH---~~~iiHrDlK  137 (283)
T d1mqba_          65 QFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKD----GEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLA  137 (283)
T ss_dssp             TCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTT----TCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hcCCCCEeeeeEEEecCCceEEEEEecccCcchhhhhccc----ccccHHHHHHHHHHHHHhhhhcc---ccccccCccc
Confidence            5799999999999999999999999999999998887653    56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+|||++.++.+||+|||+++.......  .......||+.|+|||++.+..++.++||||||+++|||++|..|+....
T Consensus       138 p~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~  217 (283)
T d1mqba_         138 ARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL  217 (283)
T ss_dssp             GGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccC
Confidence            9999999999999999999976543321  12234457899999999999999999999999999999999766643211


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      .                    ..+....+..+ .....+...+..+.++|.+||+.||++|||+.||++.|+++.+
T Consensus       218 ~--------------------~~~~~~~i~~~-~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~  272 (283)
T d1mqba_         218 S--------------------NHEVMKAINDG-FRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIR  272 (283)
T ss_dssp             C--------------------HHHHHHHHHTT-CCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             C--------------------HHHHHHHHhcc-CCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhh
Confidence            1                    01111111111 1111122456778999999999999999999999999998765

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-49  Score=308.15  Aligned_cols=203  Identities=19%  Similarity=0.257  Sum_probs=147.8

Q ss_pred             CCCCcccceeeEEEEe--CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCC--CCCeee
Q 044155            1 QMSHNHILKLIGCCLE--TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGF--PRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~--~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--~~~i~H   76 (239)
                      +++|||||++++++.+  ++..++||||+++|+|.+++...... ...+++..++.++.|++.||.|||+..  ..+|+|
T Consensus        59 ~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~~~~~~-~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiH  137 (269)
T d2java1          59 ELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKE-RQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLH  137 (269)
T ss_dssp             SCCCTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             HCCCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHHhcccc-CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEe
Confidence            5799999999999875  45678999999999999998653210 056899999999999999999999311  124999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||||+|||++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|||||||++|||++|..||..
T Consensus       138 rDiKp~NIll~~~~~vkl~DFG~a~~~~~~~-~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~  216 (269)
T d2java1         138 RDLKPANVFLDGKQNVKLGDFGLARILNHDT-SFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTA  216 (269)
T ss_dssp             --CCGGGEEECTTSCEEECCHHHHHHC------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             CcCchhhcCcCCCCcEEEeeccceeecccCC-CccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCC
Confidence            9999999999999999999999998764322 223456789999999999999999999999999999999999999854


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                     .+....+....... .+...++++.++|.+||+.||.+|||++|+++
T Consensus       217 ~~~---------------------~~~~~~i~~~~~~~-~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         217 FSQ---------------------KELAGKIREGKFRR-IPYRYSDELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             SSH---------------------HHHHHHHHHTCCCC-CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCH---------------------HHHHHHHHcCCCCC-CCcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence            221                     11111221111111 11245567899999999999999999999975

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-48  Score=303.76  Aligned_cols=205  Identities=23%  Similarity=0.321  Sum_probs=155.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||+++|++. .+..++||||+++|+|.+++....    ..+++..++.++.|++.||.|||   +++++|||||
T Consensus        64 ~l~HpnIv~l~~~~~-~~~~~iv~E~~~~g~l~~~~~~~~----~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDlK  135 (273)
T d1mp8a_          64 QFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRK----YSLDLASLILYAYQLSTALAYLE---SKRFVHRDIA  135 (273)
T ss_dssp             TCCCTTBCCEEEEEC-SSSCEEEEECCTTEEHHHHHHHTT----TTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             hCCCCCEeeEEEEEe-cCeEEEEEEeccCCcHHhhhhccC----CCCCHHHHHHHHHHHHHHhhhhc---ccCeeccccc
Confidence            579999999999995 467899999999999999877653    46899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||+++..............||+.|+|||++.+..++.++|||||||++|||++ |..||.....
T Consensus       136 p~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~  215 (273)
T d1mp8a_         136 ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN  215 (273)
T ss_dssp             GGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred             hhheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCH
Confidence            999999999999999999998765443334445568899999999999999999999999999999998 7777754321


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                                           .+....+..... ...+...++.+.++|.+||+.||.+|||+.||++.|+++.++
T Consensus       216 ---------------------~~~~~~i~~~~~-~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  269 (273)
T d1mp8a_         216 ---------------------NDVIGRIENGER-LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  269 (273)
T ss_dssp             ---------------------GGHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHcCCC-CCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence                                 111111111111 111224567899999999999999999999999999998765

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-48  Score=309.13  Aligned_cols=193  Identities=22%  Similarity=0.314  Sum_probs=157.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.+.+..++|||||.+|+|..++...     ..+++..++.++.||+.||.|||   +++|+|||||
T Consensus        71 ~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~~~~~-----~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHrDiK  142 (309)
T d1u5ra_          71 KLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHK-----KPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVK  142 (309)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCS
T ss_pred             HCCCCCEeeEEEEEEECCEEEEEEEecCCCchHHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCC
Confidence            579999999999999999999999999998887666554     57899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc---CCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT---GVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+|||++.++.+||+|||++......     ....||+.|+|||++.+   ..++.++|||||||++|+|++|..||...
T Consensus       143 p~NILl~~~~~~Kl~DFG~a~~~~~~-----~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~  217 (309)
T d1u5ra_         143 AGNILLSEPGLVKLGDFGSASIMAPA-----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (309)
T ss_dssp             GGGEEEETTTEEEECCCTTCBSSSSB-----CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             cceEEECCCCCEEEeecccccccCCC-----CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCC
Confidence            99999999999999999998765332     34579999999999864   35889999999999999999999998532


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                     .+....+.............++.+.+||.+||+.||.+|||++|+++
T Consensus       218 ~~---------------------~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         218 NA---------------------MSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             CH---------------------HHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CH---------------------HHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence            21                     11111122221111112245678999999999999999999999975

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.2e-48  Score=306.36  Aligned_cols=196  Identities=22%  Similarity=0.338  Sum_probs=150.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.+++..++||||++||+|.+++...     ..+++..+..++.||+.||.|||   +++|+|||||
T Consensus        63 ~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~~~-----~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiK  134 (307)
T d1a06a_          63 KIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEK-----GFYTERDASRLIFQVLDAVKYLH---DLGIVHRDLK  134 (307)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC-----SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHhhhcc-----cCCCHHHHHHHHHHHHHHHHhhh---hceeeeEEec
Confidence            579999999999999999999999999999999999865     57999999999999999999999   8999999999


Q ss_pred             Ccceeec---CCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccc
Q 044155           81 TSCILFN---EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~---~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~  157 (239)
                      |+||++.   .++.+||+|||+++......  ......||+.|+|||++.+..++.++|||||||++|+|++|..||...
T Consensus       135 p~Nil~~~~~~~~~vkl~DFG~a~~~~~~~--~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  212 (307)
T d1a06a_         135 PENLLYYSLDEDSKIMISDFGLSKMEDPGS--VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE  212 (307)
T ss_dssp             GGGEEESSSSTTCCEEECCC--------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccceeecccCCCceEEEeccceeEEccCCC--eeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCC
Confidence            9999995   46789999999997653322  234567999999999999999999999999999999999999998532


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..                     .+....+.....  ........++.+.++|.+||+.||++|||++|+++
T Consensus       213 ~~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         213 ND---------------------AKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             SH---------------------HHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CH---------------------HHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            21                     111111221111  11112245677899999999999999999999987

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-48  Score=306.18  Aligned_cols=196  Identities=17%  Similarity=0.238  Sum_probs=159.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++|+|.+++...     ..+++..++.++.|++.||+|||   +++|+|||||
T Consensus        64 ~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~~~~~-----~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiK  135 (288)
T d1uu3a_          64 RLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI-----GSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLK  135 (288)
T ss_dssp             HCCSTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCS
T ss_pred             HcCCCCeeEEEEEEEECCEEEEEEEccCCCCHHHhhhcc-----CCCCHHHHHHHHHHHHHHHHhhc---cccEEcCcCC
Confidence            379999999999999999999999999999999998875     57899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+||+++.++.+||+|||+++...... ........||+.|+|||++.+..++.++|||||||++|+|++|..||.... 
T Consensus       136 p~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~-  214 (288)
T d1uu3a_         136 PENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN-  214 (288)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSS-
T ss_pred             ccccccCCCceEEecccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcC-
Confidence            999999999999999999998764322 223345679999999999999999999999999999999999999986322 


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                          ..+....+.......  +...++.+++||.+||+.||++|||++|++.
T Consensus       215 --------------------~~~~~~~i~~~~~~~--p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~  260 (288)
T d1uu3a_         215 --------------------EYLIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG  260 (288)
T ss_dssp             --------------------HHHHHHHHHTTCCCC--CTTCCHHHHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred             --------------------HHHHHHHHHcCCCCC--CccCCHHHHHHHHHHccCCHhHCcCHHHHcC
Confidence                                111112222222111  1234567899999999999999999998754

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-46  Score=297.48  Aligned_cols=223  Identities=18%  Similarity=0.285  Sum_probs=165.2

Q ss_pred             CCCCcccceeeEEEEeCC----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhC-----CC
Q 044155            1 QMSHNHILKLIGCCLETP----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFG-----FP   71 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-----~~   71 (239)
                      +++|||||++++++.+.+    ..++||||+++|+|.+++++      ..+++..+..++.|++.||.|+|..     ..
T Consensus        53 ~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~------~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~  126 (303)
T d1vjya_          53 MLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGK  126 (303)
T ss_dssp             TCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCB
T ss_pred             hCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence            478999999999998654    46899999999999999986      4588999999999999999999921     02


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCcc---eeecccccccccCccccccCC------cccccchhhhhh
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETH---ITDTVMGTLGYCAPEYMRTGV------FNEKSNVFSFSV  142 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG~  142 (239)
                      ++|+||||||+|||++.++.+||+|||+++........   ......||+.|+|||++.+..      ++.++|||||||
T Consensus       127 ~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gv  206 (303)
T d1vjya_         127 PAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGL  206 (303)
T ss_dssp             CEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHH
T ss_pred             CCeeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHH
Confidence            69999999999999999999999999998876443221   233567899999999987543      567899999999


Q ss_pred             HHHHHhcCCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCC-----cHHHHHHHHHHHHHHhhhcCCCCC
Q 044155          143 FLFELLTGWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVS-----SIEKEQQLHASAQVTFECIKDSPA  217 (239)
Q Consensus       143 ~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~li~~cl~~dp~  217 (239)
                      ++|||+||..|+............      .....................     ..........+.+++.+||..||+
T Consensus       207 vl~el~tg~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~  280 (303)
T d1vjya_         207 VFWEIARRCSIGGIHEDYQLPYYD------LVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGA  280 (303)
T ss_dssp             HHHHHHHTBCBTTBCCCCCCTTTT------TSCSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGG
T ss_pred             HHHHHhhCCCCCCcccccccchhh------cccccchHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHh
Confidence            999999998887654432221110      000011111111111111111     111224567789999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 044155          218 DRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       218 ~Rps~~ell~~L~~l~~~  235 (239)
                      +|||+.||++.|.++..+
T Consensus       281 ~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         281 ARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             GSCCHHHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHh
Confidence            999999999999998765

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-48  Score=304.37  Aligned_cols=206  Identities=23%  Similarity=0.313  Sum_probs=158.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||+++|++. .+..++||||+++|+|..++.....   ..+++..++.++.||+.||+|||   +.+++|||||
T Consensus        68 ~l~h~nIv~~~g~~~-~~~~~lv~Ey~~~g~l~~~~~~~~~---~~l~~~~~~~i~~~i~~gl~~LH---~~~ivH~DlK  140 (285)
T d1fmka3          68 KLRHEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGETG---KYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLR  140 (285)
T ss_dssp             HCCCTTBCCEEEEEC-SSSCEEEECCCTTCBHHHHHSHHHH---TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred             hcccCCEeEEEEEEe-cCCeEEEEEecCCCchhhhhhhccc---ccchHHHHHHHHHHHHHHHHHHh---hhheeccccc
Confidence            479999999999985 4567899999999999988875432   46899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.+||+|||+++..............||+.|+|||++....++.++||||||+++|||++|..|+..... 
T Consensus       141 p~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~-  219 (285)
T d1fmka3         141 AANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV-  219 (285)
T ss_dssp             GGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC-
T ss_pred             ceEEEECCCCcEEEcccchhhhccCCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCC-
Confidence            9999999999999999999976644433334456689999999999999999999999999999999998766533221 


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                                         ..+....+.... ....+...++++.++|.+||+.||++|||+++|++.|+....
T Consensus       220 -------------------~~~~~~~i~~~~-~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~  273 (285)
T d1fmka3         220 -------------------NREVLDQVERGY-RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT  273 (285)
T ss_dssp             -------------------HHHHHHHHHTTC-CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTS
T ss_pred             -------------------HHHHHHHHHhcC-CCCCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhc
Confidence                               111111111111 111122456789999999999999999999999999887654

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-47  Score=297.85  Aligned_cols=203  Identities=26%  Similarity=0.378  Sum_probs=156.6

Q ss_pred             CCCCcccceeeEEEEe-CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCLE-TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~-~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++||||++++|++.+ .+..++||||+++|+|.+++.....   ..+++..++.++.||+.||.|||   +.+++||||
T Consensus        56 ~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~---~~l~~~~~~~i~~~i~~al~ylH---~~~ivH~dl  129 (262)
T d1byga_          56 QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDL  129 (262)
T ss_dssp             TCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred             hCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhcCC---CCCCHHHHHHHHHHHHhhccccc---cCceecccc
Confidence            5799999999999865 4568999999999999999976422   45899999999999999999999   899999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      ||+||+++.++.+|++|||+++.....    .....+++.|+|||++.+..++.++||||||+++|||+| |..||....
T Consensus       130 kp~Nil~~~~~~~kl~dfg~s~~~~~~----~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~  205 (262)
T d1byga_         130 AARNVLVSEDNVAKVSDFGLTKEASST----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP  205 (262)
T ss_dssp             SGGGEEECTTSCEEECCCCC----------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC
T ss_pred             chHhheecCCCCEeecccccceecCCC----CccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999999998754322    224457889999999998999999999999999999998 566654321


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRS  235 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~  235 (239)
                                           ..+....+..+ .....+...++++.++|.+||+.||.+|||+.++++.|+++...
T Consensus       206 ---------------------~~~~~~~i~~~-~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~~  260 (262)
T d1byga_         206 ---------------------LKDVVPRVEKG-YKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH  260 (262)
T ss_dssp             ---------------------GGGHHHHHTTT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHcC-CCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHhC
Confidence                                 11111111111 11111224557789999999999999999999999999988653

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-47  Score=298.57  Aligned_cols=203  Identities=24%  Similarity=0.438  Sum_probs=162.7

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||++++|++.+ +..++||||++++++.+++....    ..+++..++.++.|++.||.|||   +++|+|||||
T Consensus        67 ~l~H~nIv~~~g~~~~-~~~~lv~e~~~~~~l~~~~~~~~----~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDik  138 (273)
T d1u46a_          67 SLDHRNLIRLYGVVLT-PPMKMVTELAPLGSLLDRLRKHQ----GHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLA  138 (273)
T ss_dssp             HCCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHHHHHG----GGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred             hCCCCCEEEEEEEEee-cchheeeeeecCcchhhhhhccc----CCCCHHHHHHHHHHHHHHHHHhh---hCCEeeeeec
Confidence            4799999999999965 46789999999999999887643    56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc--eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCcccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH--ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLV  157 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~  157 (239)
                      |+||+++.++.+||+|||+++........  ......+|..|+|||.+.+..++.++||||||+++|||+| |..||...
T Consensus       139 p~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~  218 (273)
T d1u46a_         139 ARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL  218 (273)
T ss_dssp             GGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             HHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCc
Confidence            99999999999999999999876544322  2234457889999999999999999999999999999998 88887532


Q ss_pred             cccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHH
Q 044155          158 KDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQI  232 (239)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l  232 (239)
                      .                     ..+....+.........+...+..+.++|.+||+.||++|||+.||++.|+++
T Consensus       219 ~---------------------~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         219 N---------------------GSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             C---------------------HHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             C---------------------HHHHHHHHHhCCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            2                     12222222222222222234567799999999999999999999999998874

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-47  Score=300.83  Aligned_cols=210  Identities=21%  Similarity=0.340  Sum_probs=158.6

Q ss_pred             CCcccceeeEEEEeC-CCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhCC
Q 044155            3 SHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFGF   70 (239)
Q Consensus         3 ~H~niv~l~~~~~~~-~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~   70 (239)
                      +|+||+.+++++... ...++|||||++|+|.++++.....           ....+++..++.++.|++.||.|||   
T Consensus        75 ~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---  151 (299)
T d1ywna1          75 HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---  151 (299)
T ss_dssp             CCTTBCCEEEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHH---
T ss_pred             CCCeEEEeeeeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHH---
Confidence            799999999998765 4689999999999999999764320           1135889999999999999999999   


Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT  149 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~  149 (239)
                      +++|+||||||+|||++.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++
T Consensus       152 ~~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt  231 (299)
T d1ywna1         152 SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS  231 (299)
T ss_dssp             HTTCCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             hCCCcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHh
Confidence            89999999999999999999999999999976543322 22345578999999999999999999999999999999999


Q ss_pred             CC-CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 044155          150 GW-DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKK  228 (239)
Q Consensus       150 g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~  228 (239)
                      |. .||.......                     .+...+........+...++++.+++.+||+.||.+|||++|+++.
T Consensus       232 ~~~~p~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         232 LGASPYPGVKIDE---------------------EFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             TSCCSSTTCCCSH---------------------HHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHH---------------------HHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            75 4554322111                     0111111111111122445678999999999999999999999999


Q ss_pred             HHHHHHhh
Q 044155          229 LRQIYRSL  236 (239)
Q Consensus       229 L~~l~~~~  236 (239)
                      |++++++-
T Consensus       291 L~~ilq~n  298 (299)
T d1ywna1         291 LGNLLQAN  298 (299)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhCC
Confidence            99987653

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=7.9e-47  Score=304.80  Aligned_cols=197  Identities=16%  Similarity=0.257  Sum_probs=161.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||++++++.+.+..++||||+++|+|.+++....    ..+++..+..++.||+.||.|||   +++++|||||
T Consensus        79 ~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~l~~~~----~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHrDiK  151 (350)
T d1koaa2          79 VLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEH----NKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLK  151 (350)
T ss_dssp             HTCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTCTT----SCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred             hCCCCCCCcEEEEEEECCEEEEEEEcCCCCCHHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHH---hcCCeeeeec
Confidence            4799999999999999999999999999999999986543    56999999999999999999999   8999999999


Q ss_pred             CcceeecC--CCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNE--ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+|||++.  ++.+||+|||++.......  ......||+.|+|||++.+..++.++|||||||++|+|++|..||....
T Consensus       152 p~NIll~~~~~~~vkL~DFG~a~~~~~~~--~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~  229 (350)
T d1koaa2         152 PENIMFTTKRSNELKLIDFGLTAHLDPKQ--SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEN  229 (350)
T ss_dssp             GGGEEESSTTSCCEEECCCTTCEECCTTS--CEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             hhHeeeccCCCCeEEEeecchheeccccc--ccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCC
Confidence            99999964  5789999999998764332  2345678999999999999999999999999999999999999985322


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                     .+....+.....  ........++.+++||.+||+.||++|||++|+++
T Consensus       230 ~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         230 D---------------------DETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             H---------------------HHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             H---------------------HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1                     111111111111  11111245567899999999999999999999986

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-46  Score=296.87  Aligned_cols=196  Identities=20%  Similarity=0.277  Sum_probs=162.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||++++++.+.+..++|||||++|+|.+++...     ..+++..++.++.|++.||+|||   +++|+|||||
T Consensus        69 ~l~HpnIv~~~~~~~~~~~~~iv~E~~~gg~L~~~i~~~-----~~l~~~~~~~~~~qi~~al~yLH---~~~ivHrDiK  140 (293)
T d1jksa_          69 EIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK-----ESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLK  140 (293)
T ss_dssp             HCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hCCCCCCCcEEEEEEECCEEEEEEEcCCCccccchhccc-----cccchhHHHHHHHHHHHHHHhhh---hcceeecccc
Confidence            378999999999999999999999999999999999875     56999999999999999999999   8999999999


Q ss_pred             CcceeecCCC----ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           81 TSCILFNEEN----VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        81 ~~nil~~~~~----~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |+||+++.++    .+|++|||++.......  ......||+.|+|||++.+..++.++|||||||++|+|++|..||..
T Consensus       141 p~Nill~~~~~~~~~vkl~DfG~a~~~~~~~--~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~  218 (293)
T d1jksa_         141 PENIMLLDRNVPKPRIKIIDFGLAHKIDFGN--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG  218 (293)
T ss_dssp             GGGEEESCSSSSSCCEEECCCTTCEECTTSC--BCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             cceEEEecCCCcccceEecchhhhhhcCCCc--cccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCC
Confidence            9999998877    48999999987764332  23345689999999999998999999999999999999999999864


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                     .+....+.....  ........+..+.+||.+||+.||++|||++|+++
T Consensus       219 ~~~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         219 DTK---------------------QETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             SSH---------------------HHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCH---------------------HHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            221                     111112222211  12222345678899999999999999999999986

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.6e-46  Score=303.23  Aligned_cols=197  Identities=18%  Similarity=0.260  Sum_probs=162.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +|+|||||++++++.+++..++|||||++|+|.+.+....    ..+++.+++.++.||+.||.|||   +++|+|||||
T Consensus        82 ~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~~~~~~----~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHRDiK  154 (352)
T d1koba_          82 QLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAED----YKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIK  154 (352)
T ss_dssp             TCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTT----CCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred             hCCCCCCCcEEEEEEECCEEEEEEEcCCCChHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccc
Confidence            5799999999999999999999999999999998886543    46999999999999999999999   8999999999


Q ss_pred             Ccceeec--CCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFN--EENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~--~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+|||++  .++.+||+|||++.......  ......|++.|+|||++.+..++.++|||||||++|+|++|..||....
T Consensus       155 p~NILl~~~~~~~vkL~DFGla~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~  232 (352)
T d1koba_         155 PENIMCETKKASSVKIIDFGLATKLNPDE--IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED  232 (352)
T ss_dssp             GGGEEESSTTCCCEEECCCTTCEECCTTS--CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS
T ss_pred             cccccccccCCCeEEEeecccceecCCCC--ceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Confidence            9999998  56889999999998764432  2345668999999999999999999999999999999999999986432


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                     .+....+.....  ........++++.+||.+||+.||.+|||++|+++
T Consensus       233 ~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         233 D---------------------LETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             H---------------------HHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             H---------------------HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1                     111112211111  11111245677899999999999999999999986

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-46  Score=297.63  Aligned_cols=208  Identities=22%  Similarity=0.351  Sum_probs=167.3

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-----------CCCcCCHHHHHHHHHHHHHHHhHHhhCCC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-----------HFEPLLLKHRLKIAMDIVHALAYLHFGFP   71 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~LH~~~~   71 (239)
                      +|||||+++++|.+++..++||||+++|+|.+++......           ....+++..++.++.|++.||.|||   +
T Consensus        77 ~HpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH---~  153 (299)
T d1fgka_          77 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---S  153 (299)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             CCCeEEecccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhh---h
Confidence            7999999999999999999999999999999999765321           1246899999999999999999999   8


Q ss_pred             CCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhc-
Q 044155           72 RPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-  149 (239)
Q Consensus        72 ~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-  149 (239)
                      .+++||||||+|||++.++.+||+|||++........ .......+++.|+|||.+.+..++.++||||||+++|||++ 
T Consensus       154 ~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~  233 (299)
T d1fgka_         154 KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTL  233 (299)
T ss_dssp             TTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccC
Confidence            9999999999999999999999999999876643322 22345568899999999999999999999999999999998 


Q ss_pred             CCCCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 044155          150 GWDVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKL  229 (239)
Q Consensus       150 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L  229 (239)
                      |..||.....                     ......+.. ......+...++++.++|.+||+.||++|||+.||++.|
T Consensus       234 g~~p~~~~~~---------------------~~~~~~i~~-~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L  291 (299)
T d1fgka_         234 GGSPYPGVPV---------------------EELFKLLKE-GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  291 (299)
T ss_dssp             SCCSSTTCCH---------------------HHHHHHHHT-TCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCCCCH---------------------HHHHHHHHc-CCCCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHH
Confidence            5667643221                     111111111 111111224556789999999999999999999999999


Q ss_pred             HHHHHh
Q 044155          230 RQIYRS  235 (239)
Q Consensus       230 ~~l~~~  235 (239)
                      +++++-
T Consensus       292 ~~i~a~  297 (299)
T d1fgka_         292 DRIVAL  297 (299)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            998653

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-46  Score=298.37  Aligned_cols=195  Identities=19%  Similarity=0.274  Sum_probs=162.8

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++||||+++|+|.+++...     ..+++..++.++.|++.||.|||   +++|+|||||
T Consensus        61 ~l~hp~Iv~l~~~~~~~~~~~iv~ey~~gg~L~~~~~~~-----~~~~e~~~~~~~~qil~al~ylH---~~~iiHRDlK  132 (337)
T d1o6la_          61 NTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE-----RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIK  132 (337)
T ss_dssp             SCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCC
T ss_pred             hCCCCCEEEEEeeeccccccccceeccCCCchhhhhhcc-----cCCcHHHHHHHHHHHhhhhhhhh---hcCccccccC
Confidence            479999999999999999999999999999999999876     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.+|.+||+|||+++...... .......||+.|+|||++.+..++.++|||||||++|||++|..||....  
T Consensus       133 P~NILl~~~g~vkl~DFG~a~~~~~~~-~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~--  209 (337)
T d1o6la_         133 LENLMLDKDGHIKITDFGLCKEGISDG-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD--  209 (337)
T ss_dssp             GGGEEECTTSCEEECCCTTCBCSCCTT-CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS--
T ss_pred             HHHeEecCCCCEEEeecccccccccCC-cccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcC--
Confidence            999999999999999999997653322 23445679999999999999999999999999999999999999886432  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-----MVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~ell~  227 (239)
                                         ..+............  +...++++++||.+||+.||.+||+     ++|+++
T Consensus       210 -------------------~~~~~~~i~~~~~~~--p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         210 -------------------HERLFELILMEEIRF--PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             -------------------HHHHHHHHHHCCCCC--CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             -------------------HHHHHHHHhcCCCCC--CccCCHHHHHHHHhhccCCchhhcccccccHHHHHc
Confidence                               112222222222211  1245667899999999999999995     788875

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-46  Score=300.48  Aligned_cols=204  Identities=19%  Similarity=0.318  Sum_probs=161.1

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||+++|+|.++ ..++++|++.+++|.+.+....    ..+++..++.++.||+.||+|||   +++|+|||||
T Consensus        67 ~l~HpnIv~l~g~~~~~-~~~~v~e~~~~~~l~~~~~~~~----~~~~~~~~~~i~~qi~~gl~yLH---~~~iiHrDlK  138 (317)
T d1xkka_          67 SVDNPHVCRLLGICLTS-TVQLITQLMPFGCLLDYVREHK----DNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLA  138 (317)
T ss_dssp             HCCCTTBCCEEEEEESS-SEEEEEECCTTCBHHHHHHHTS----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCCEeeEEEEEecC-CeeEEEEeccCCcccccccccc----cCCCHHHHHHHHHHHHHHHHHHH---HcCcccCcch
Confidence            47999999999999765 4678899999999999887753    57899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcc-eeecccccccccCccccccCCcccccchhhhhhHHHHHhc-CCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETH-ITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLT-GWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~-g~~p~~~~~  158 (239)
                      |+||+++.++.+||+|||+++........ ......||+.|+|||++.+..++.++||||||+++|||+| |..||....
T Consensus       139 p~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~  218 (317)
T d1xkka_         139 ARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP  218 (317)
T ss_dssp             GGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred             hhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC
Confidence            99999999999999999999876443322 2334468999999999999999999999999999999998 677775332


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYR  234 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~  234 (239)
                      .                     .+....... ......+...++.+.+++.+||+.||.+|||+.|+++.|..+..
T Consensus       219 ~---------------------~~~~~~i~~-~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~  272 (317)
T d1xkka_         219 A---------------------SEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  272 (317)
T ss_dssp             G---------------------GGHHHHHHH-TCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             H---------------------HHHHHHHHc-CCCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHh
Confidence            1                     111111111 11111122456778999999999999999999999999988754

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-46  Score=297.93  Aligned_cols=208  Identities=22%  Similarity=0.378  Sum_probs=165.1

Q ss_pred             CCCCcccceeeEEEEeC-CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            1 QMSHNHILKLIGCCLET-PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~-~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      +++||||++++|++.+. +..++||||+++++|.+++....    ..+++..++.++.|++.||.|||   +.+|+||||
T Consensus        84 ~l~HpnIv~~~g~~~~~~~~~~lv~E~~~~g~l~~~~~~~~----~~~~~~~~~~i~~qia~gL~~lH---~~~iiHrDL  156 (311)
T d1r0pa_          84 DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET----HNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDL  156 (311)
T ss_dssp             TCCCTTBCCCCEEEEETTTEEEEEEECCTTCBHHHHHHCTT----CCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred             hCCCCCEeEEeEEEEecCCceEEEEEEeecCchhhhhcccc----ccchHHHHHHHHHHHHHhhhhhc---ccCcccCCc
Confidence            58999999999998764 57899999999999999988653    46778889999999999999999   899999999


Q ss_pred             cCcceeecCCCceeEcccccccccCCCCc---ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           80 KTSCILFNEENVAKLFDFSLSISIPEGET---HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        80 k~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      ||+|||+++++.+||+|||+++.......   .......||+.|+|||.+....++.++||||||+++|||++|+.||..
T Consensus       157 K~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~  236 (311)
T d1r0pa_         157 AARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  236 (311)
T ss_dssp             SGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC
T ss_pred             cHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCC
Confidence            99999999999999999999976543221   122345688999999999999999999999999999999998887654


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIYRSL  236 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~~~~  236 (239)
                      ..+..+.                    ......+. ....+...++.+.++|.+||+.||++|||+.||++.|+++.++.
T Consensus       237 ~~~~~~~--------------------~~~i~~g~-~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~~  295 (311)
T d1r0pa_         237 DVNTFDI--------------------TVYLLQGR-RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF  295 (311)
T ss_dssp             ------C--------------------HHHHHTTC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred             CCCHHHH--------------------HHHHHcCC-CCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHhh
Confidence            3221111                    11111110 01111234567899999999999999999999999999998764

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-46  Score=298.10  Aligned_cols=201  Identities=19%  Similarity=0.291  Sum_probs=159.6

Q ss_pred             CCCcccceeeEEEEe----CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeec
Q 044155            2 MSHNHILKLIGCCLE----TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFR   77 (239)
Q Consensus         2 l~H~niv~l~~~~~~----~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~   77 (239)
                      ++|||||+++++|.+    ....++|||||+||+|.+++.....   ..+++..++.++.|++.||+|||   +++|+||
T Consensus        62 ~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~---~~l~e~~~~~i~~qi~~al~ylH---~~~iiHR  135 (335)
T d2ozaa1          62 SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGD---QAFTEREASEIMKSIGEAIQYLH---SINIAHR  135 (335)
T ss_dssp             TTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSC---CCEEHHHHHHHHHHHHHHHHHHH---HTTEECC
T ss_pred             cCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCC---CCcCHHHHHHHHHHHHHHHHHHH---HcCCccc
Confidence            479999999999976    3567999999999999999986533   56999999999999999999999   8999999


Q ss_pred             cccCcceeecC---CCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           78 NFKTSCILFNE---ENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        78 dlk~~nil~~~---~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      ||||+|||++.   ++.+||+|||+++......  ......||+.|+|||++.+..++.++|||||||++|+|++|..||
T Consensus       136 DiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf  213 (335)
T d2ozaa1         136 DVKPENLLYTSKRPNAILKLTDFGFAKETTSHN--SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPF  213 (335)
T ss_dssp             CCSGGGEEESCSSTTCCEEECCCTTCEECCCCC--CCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSC
T ss_pred             cccccccccccccccccccccccceeeeccCCC--ccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCC
Confidence            99999999986   4569999999997664332  234567999999999999999999999999999999999999999


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcC--CCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVED--VSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..........                 ..........  .........++++.+||.+||+.||++|||+.|+++
T Consensus       214 ~~~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         214 YSNHGLAISP-----------------GMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  271 (335)
T ss_dssp             EETTCC-------------------------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCCCHHHHHH-----------------HHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            6433211100                 0000111111  112223356788999999999999999999999987

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-46  Score=298.63  Aligned_cols=210  Identities=20%  Similarity=0.295  Sum_probs=166.0

Q ss_pred             CC-CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC-----------CCCCcCCHHHHHHHHHHHHHHHhHHhh
Q 044155            1 QM-SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-----------PHFEPLLLKHRLKIAMDIVHALAYLHF   68 (239)
Q Consensus         1 ~l-~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~-----------~~~~~~~~~~~~~~~~~i~~~l~~LH~   68 (239)
                      ++ +|||||+++|++.+++..++||||+++|+|.++++....           .....+++..+..++.||+.||.|+| 
T Consensus        66 ~l~~HpnIv~~~~~~~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH-  144 (309)
T d1fvra_          66 KLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS-  144 (309)
T ss_dssp             TCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH-
T ss_pred             hccCCCCEeeEEEEEecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhh-
Confidence            35 799999999999999999999999999999999975421           11156899999999999999999999 


Q ss_pred             CCCCCeeeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHh
Q 044155           69 GFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        69 ~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~  148 (239)
                        +++++||||||+|||++.++.+||+|||+++......  ......||..|+|||.+....++.++||||||+++|||+
T Consensus       145 --~~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell  220 (309)
T d1fvra_         145 --QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV--KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV  220 (309)
T ss_dssp             --HTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEEC--CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             --cCCccccccccceEEEcCCCceEEccccccccccccc--cccceecCCcccchHHhccCCCCccceeehhHHHHHHHH
Confidence              8999999999999999999999999999986543221  123445889999999999999999999999999999999


Q ss_pred             cCCC-CcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          149 TGWD-VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       149 ~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      +|.. ||...                     ...+....+..+. ....+...++++.+||.+||+.||++|||++||++
T Consensus       221 ~~~~~p~~~~---------------------~~~~~~~~i~~~~-~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~  278 (309)
T d1fvra_         221 SLGGTPYCGM---------------------TCAELYEKLPQGY-RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILV  278 (309)
T ss_dssp             TTSCCTTTTC---------------------CHHHHHHHGGGTC-CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             hcCCCCCCCC---------------------CHHHHHHHHHhcC-CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            9865 44321                     1122222222211 11112245678999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 044155          228 KLRQIYRSLS  237 (239)
Q Consensus       228 ~L~~l~~~~~  237 (239)
                      .|+++.++..
T Consensus       279 ~L~~i~~~~~  288 (309)
T d1fvra_         279 SLNRMLEERK  288 (309)
T ss_dssp             HHHHHHHSSS
T ss_pred             HHHHHHhcCc
Confidence            9999886543

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-46  Score=298.54  Aligned_cols=208  Identities=24%  Similarity=0.345  Sum_probs=164.9

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC-------------------CCCCcCCHHHHHHHHHHHHH
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-------------------PHFEPLLLKHRLKIAMDIVH   61 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~-------------------~~~~~~~~~~~~~~~~~i~~   61 (239)
                      +++||||+++++++.+.+..+++|||+++|+|.+++.....                   .....+++..++.++.|++.
T Consensus        72 ~l~h~niv~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~  151 (301)
T d1lufa_          72 EFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAA  151 (301)
T ss_dssp             TCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHH
T ss_pred             hcCCCCcccceeeeccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999975422                   11135788999999999999


Q ss_pred             HHhHHhhCCCCCeeeccccCcceeecCCCceeEcccccccccCCCC-cceeecccccccccCccccccCCcccccchhhh
Q 044155           62 ALAYLHFGFPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGE-THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSF  140 (239)
Q Consensus        62 ~l~~LH~~~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  140 (239)
                      ||+|||   +++++||||||+|||++.++.+||+|||+++...... ........+++.|+|||.+.+..++.++|||||
T Consensus       152 gl~ylH---~~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~  228 (301)
T d1lufa_         152 GMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAY  228 (301)
T ss_dssp             HHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             Hhhhcc---cCCeEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccc
Confidence            999999   8999999999999999999999999999987653322 222345568899999999999999999999999


Q ss_pred             hhHHHHHhcCCC-CcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCC
Q 044155          141 SVFLFELLTGWD-VSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADR  219 (239)
Q Consensus       141 G~~l~~~~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R  219 (239)
                      |+++|||++|.. ||....                     ..+....+..+.. ...+...++++.+++.+||+.||++|
T Consensus       229 Gvvl~ell~~~~~p~~~~~---------------------~~e~~~~v~~~~~-~~~p~~~~~~~~~li~~cl~~~P~~R  286 (301)
T d1lufa_         229 GVVLWEIFSYGLQPYYGMA---------------------HEEVIYYVRDGNI-LACPENCPLELYNLMRLCWSKLPADR  286 (301)
T ss_dssp             HHHHHHHHTTTCCTTTTSC---------------------HHHHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             hhhHHHHHccCCCCCCCCC---------------------HHHHHHHHHcCCC-CCCCccchHHHHHHHHHHcCCChhHC
Confidence            999999999964 554322                     1122222222221 11123456779999999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 044155          220 PSMVDVAKKLRQIY  233 (239)
Q Consensus       220 ps~~ell~~L~~l~  233 (239)
                      ||+.||+++|+++.
T Consensus       287 Pt~~ev~~~L~~i~  300 (301)
T d1lufa_         287 PSFCSIHRILQRMC  300 (301)
T ss_dssp             CCHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHhc
Confidence            99999999999874

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-45  Score=294.18  Aligned_cols=192  Identities=21%  Similarity=0.351  Sum_probs=161.5

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.+.+..++||||++||+|..++...     ..++...++.++.||+.||.|||   +++|+|||||
T Consensus        60 ~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~l~~~~~~~-----~~~~~~~~~~~~~qi~~al~~lH---~~~iiHrDiK  131 (316)
T d1fota_          60 IVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS-----QRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLK  131 (316)
T ss_dssp             SCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHT-----SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCC
T ss_pred             hccCcChhheeeeEeeCCeeeeEeeecCCcccccccccc-----ccccccHHHHHHHHHHHhhhhhc---cCcEEccccC
Confidence            479999999999999999999999999999999999876     56788999999999999999999   9999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.+||+|||+++.....    .....||+.|+|||++.+..++.++|||||||++|+|++|..||....  
T Consensus       132 p~NILl~~~g~vkL~DFG~a~~~~~~----~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~--  205 (316)
T d1fota_         132 PENILLDKNGHIKITDFGFAKYVPDV----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN--  205 (316)
T ss_dssp             GGGEEECTTSCEEECCCSSCEECSSC----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS--
T ss_pred             chheeEcCCCCEEEecCccceEeccc----cccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcC--
Confidence            99999999999999999999876433    235679999999999999999999999999999999999999985322  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                         ..+....+.......  +...++++.+++.+||..||.+|+     |++++++
T Consensus       206 -------------------~~~~~~~i~~~~~~~--p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         206 -------------------TMKTYEKILNAELRF--PPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             -------------------HHHHHHHHHHCCCCC--CTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             -------------------HHHHHHHHHcCCCCC--CCCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence                               112222222222211  123456789999999999999996     8999876

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-46  Score=296.12  Aligned_cols=209  Identities=19%  Similarity=0.332  Sum_probs=167.1

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCC-------------CCCcCCHHHHHHHHHHHHHHHhHHhhC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQP-------------HFEPLLLKHRLKIAMDIVHALAYLHFG   69 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~-------------~~~~~~~~~~~~~~~~i~~~l~~LH~~   69 (239)
                      +|||||++++++.+....++||||+++|+|.++++.....             ....+++..+..++.||+.||+|||  
T Consensus        85 ~HpnIv~~~g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH--  162 (311)
T d1t46a_          85 NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA--  162 (311)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             CCCCEEEEEEEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH--
Confidence            6999999999999999999999999999999999865321             1136889999999999999999999  


Q ss_pred             CCCCeeeccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHh
Q 044155           70 FPRPIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        70 ~~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~  148 (239)
                       +++++||||||+||+++.++.++++|||.++....... .......||+.|+|||++....++.++||||||+++|||+
T Consensus       163 -~~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ell  241 (311)
T d1t46a_         163 -SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELF  241 (311)
T ss_dssp             -HTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             -hCCeeecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHH
Confidence             89999999999999999999999999999987654332 2334567899999999999999999999999999999999


Q ss_pred             cCCCC-cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          149 TGWDV-SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       149 ~g~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      |++.| +.....                     .+.+...+........+...+..+.+||.+||+.||.+|||++++++
T Consensus       242 t~g~p~~~~~~~---------------------~~~~~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~  300 (311)
T d1t46a_         242 SLGSSPYPGMPV---------------------DSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ  300 (311)
T ss_dssp             TTTCCSSTTCCS---------------------SHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             hCCCCCCCCCCH---------------------HHHHHHHHhcCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            95544 432211                     01111111111111112245677999999999999999999999999


Q ss_pred             HHHHHHHh
Q 044155          228 KLRQIYRS  235 (239)
Q Consensus       228 ~L~~l~~~  235 (239)
                      .|++...+
T Consensus       301 ~L~~~i~~  308 (311)
T d1t46a_         301 LIEKQISE  308 (311)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhhcc
Confidence            99987765

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.4e-46  Score=300.13  Aligned_cols=195  Identities=18%  Similarity=0.232  Sum_probs=158.7

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++|||||++++++.+.+..++||||+++|+|.+++...     ..+++..++.++.||+.||.|||   +++++||||||
T Consensus        64 ~~hpnIv~l~~~~~~~~~~~ivmE~~~gg~L~~~l~~~-----~~~~e~~~~~~~~qi~~aL~ylH---~~~iiHrDlKP  135 (364)
T d1omwa3          64 GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH-----GVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKP  135 (364)
T ss_dssp             SCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred             CCCCcEEEEEEEEEECCEEEEEEEecCCCcHHHHHHhc-----ccccHHHHHHHHHHHHHHHHHHH---HCCccceeecc
Confidence            57999999999999999999999999999999999875     56889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      +|||++.++.+||+|||++.......   .....||+.|+|||++.. ..++.++|||||||++|+|++|..||......
T Consensus       136 ~NILl~~~g~iKl~DFGla~~~~~~~---~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~  212 (364)
T d1omwa3         136 ANILLDEHGHVRISDLGLACDFSKKK---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK  212 (364)
T ss_dssp             GGEEECSSSCEEECCCTTCEECSSSC---CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSS
T ss_pred             ceeEEcCCCcEEEeeeceeeecCCCc---ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHH
Confidence            99999999999999999998664332   335579999999999875 56899999999999999999999998643211


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-----MVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~ell~  227 (239)
                      .                  ..............  .+...++++.+||.+||+.||.+|||     |+|+++
T Consensus       213 ~------------------~~~~~~~~~~~~~~--~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         213 D------------------KHEIDRMTLTMAVE--LPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             C------------------HHHHHHHSSSCCCC--CCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred             H------------------HHHHHHhcccCCCC--CCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence            0                  00111111111111  11234567899999999999999999     688875

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=8.7e-46  Score=290.59  Aligned_cols=205  Identities=24%  Similarity=0.355  Sum_probs=158.2

Q ss_pred             CCCCcccceeeEEEEeCCC----ceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            1 QMSHNHILKLIGCCLETPI----PILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~----~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +++||||+++++++.....    .++||||+++++|.+++...     ..+++..++.++.||+.||.|||   +++++|
T Consensus        63 ~~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~~-----~~l~~~~~~~i~~qi~~al~~lH---~~~iiH  134 (277)
T d1o6ya_          63 ALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-----GPMTPKRAIEVIADACQALNFSH---QNGIIH  134 (277)
T ss_dssp             TCCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTEEC
T ss_pred             hcCCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhhccc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCccC
Confidence            4799999999999986543    68999999999999988775     57899999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCC--cceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGE--THITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      |||||+||+++.++..+++|||.+.......  ........||+.|+|||++.+..++.++|||||||++|+|+||..||
T Consensus       135 rDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf  214 (277)
T d1o6ya_         135 RDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPF  214 (277)
T ss_dssp             CCCSGGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ccccCcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCC
Confidence            9999999999999999999999876543222  12334567999999999999989999999999999999999999998


Q ss_pred             ccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCC-CHHHHHHHHHH
Q 044155          155 DLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKDSPADRP-SMVDVAKKLRQ  231 (239)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rp-s~~ell~~L~~  231 (239)
                      ......                     +.....+.......  .....++.+.++|.+||+.||.+|| |++++++.|.+
T Consensus       215 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r  273 (277)
T d1o6ya_         215 TGDSPV---------------------SVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVR  273 (277)
T ss_dssp             CCSSHH---------------------HHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             CCcCHH---------------------HHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHH
Confidence            642211                     11111111111111  1124557789999999999999999 89999999988


Q ss_pred             HHH
Q 044155          232 IYR  234 (239)
Q Consensus       232 l~~  234 (239)
                      +.+
T Consensus       274 ~~n  276 (277)
T d1o6ya_         274 VHN  276 (277)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            764

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.5e-45  Score=288.50  Aligned_cols=194  Identities=24%  Similarity=0.320  Sum_probs=159.5

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      .||||+++++++.+++..++||||+++|+|.++++..     ..+++..++.++.||+.||.|||   +++|+||||||+
T Consensus        68 ~hpnIv~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~-----~~l~e~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~  139 (277)
T d1phka_          68 GHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK-----VTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPE  139 (277)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGG
T ss_pred             CCCCeEEEEeecccCcceEEEEEcCCCchHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HcCCcccccccc
Confidence            3999999999999999999999999999999999865     57999999999999999999999   899999999999


Q ss_pred             ceeecCCCceeEcccccccccCCCCcceeecccccccccCcccccc------CCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           83 CILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT------GVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        83 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      ||+++.++.+||+|||++.......  ......||+.|+|||.+.+      ..++.++||||+||++|+|++|..||..
T Consensus       140 Nill~~~~~~kl~DFG~a~~~~~~~--~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~  217 (277)
T d1phka_         140 NILLDDDMNIKLTDFGFSCQLDPGE--KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH  217 (277)
T ss_dssp             GEEECTTCCEEECCCTTCEECCTTC--CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             eEEEcCCCCeEEccchheeEccCCC--ceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCC
Confidence            9999999999999999998764432  2345678999999998853      3467899999999999999999999864


Q ss_pred             ccccccccccchhhhhhhhhccchhhhhhhhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ...                     .+....+..+..  ........++++.+++.+||+.||.+|||++|+++
T Consensus       218 ~~~---------------------~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         218 RKQ---------------------MLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             SSH---------------------HHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             CCH---------------------HHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            321                     111111122111  11112256678999999999999999999999876

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-45  Score=292.08  Aligned_cols=197  Identities=15%  Similarity=0.238  Sum_probs=162.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.+.+..++|||||+||+|.+++....    ..+++.++..++.||+.||.|||   +++|+|||||
T Consensus        57 ~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L~~~i~~~~----~~l~e~~~~~i~~qi~~al~yLH---~~~iiHrDlK  129 (321)
T d1tkia_          57 IARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSA----FELNEREIVSYVHQVCEALQFLH---SHNIGHFDIR  129 (321)
T ss_dssp             HSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSS----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred             hCCCCCCCeEEEEEEECCEEEEEEecCCCCcHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHH---HcCCCccccc
Confidence            3789999999999999999999999999999999997653    46899999999999999999999   8999999999


Q ss_pred             CcceeecCC--CceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNEE--NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~--~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+|||++.+  ..++|+|||++.......  ......+++.|+|||...+..++.++|||||||++|+|++|..||....
T Consensus       130 p~NIll~~~~~~~ikl~DFG~~~~~~~~~--~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~  207 (321)
T d1tkia_         130 PENIIYQTRRSSTIKIIEFGQARQLKPGD--NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET  207 (321)
T ss_dssp             GGGEEESSSSCCCEEECCCTTCEECCTTC--EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             ccceeecCCCceEEEEcccchhhccccCC--cccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCC
Confidence            999999854  478999999987764332  2345568999999999999999999999999999999999999985322


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                                           ..+....+........  .....++++++||.+||..||.+|||++|+++
T Consensus       208 ---------------------~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         208 ---------------------NQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             ---------------------HHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ---------------------HHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                                 1222223333322211  12245677899999999999999999999987

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-45  Score=293.96  Aligned_cols=194  Identities=22%  Similarity=0.318  Sum_probs=160.9

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      ++|||||++++++.+++..++||||+++|+|.+++...     ..+++..++.++.||+.||.|||   +++++||||||
T Consensus        60 ~~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~~~i~~~-----~~~~e~~~~~~~~qi~~al~ylH---~~~iiHrDikp  131 (320)
T d1xjda_          60 WEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC-----HKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKL  131 (320)
T ss_dssp             TTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCG
T ss_pred             CCCCcEEEEEEEEccCCceeEEEeecCCCcHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCcc
Confidence            68999999999999999999999999999999999876     56889999999999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCcccccccc
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDVH  161 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~~  161 (239)
                      +|||++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|||||||++|+|++|..||....   
T Consensus       132 ~NiL~~~~~~~kl~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~---  207 (320)
T d1xjda_         132 DNILLDKDGHIKIADFGMCKENMLGD-AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD---  207 (320)
T ss_dssp             GGEEECTTSCEEECCCTTCBCCCCTT-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS---
T ss_pred             cceeecCCCceeccccchhhhccccc-ccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCC---
Confidence            99999999999999999997653322 22345678999999999999999999999999999999999999986422   


Q ss_pred             cccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH-HHHH
Q 044155          162 DLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV-DVAK  227 (239)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~-ell~  227 (239)
                                        ..+....+......  .+...++.+.+||.+||+.||++|||+. ++++
T Consensus       208 ------------------~~~~~~~i~~~~~~--~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         208 ------------------EEELFHSIRMDNPF--YPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             ------------------HHHHHHHHHHCCCC--CCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             ------------------HHHHHHHHHcCCCC--CCccCCHHHHHHHHHhcccCCCCCcCHHHHHHh
Confidence                              11111122222111  1123467789999999999999999985 6754

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.9e-45  Score=293.20  Aligned_cols=192  Identities=18%  Similarity=0.255  Sum_probs=161.3

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.+....++||||+.+|+|.+++...     ..+++..++.++.||+.||.|||   +++|+|||||
T Consensus        97 ~l~hpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~l~~~-----~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHRDIK  168 (350)
T d1rdqe_          97 AVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI-----GRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLK  168 (350)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             HcCCCcEeecccccccccccccccccccccchhhhHhhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCcCC
Confidence            479999999999999999999999999999999999875     56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDLVKDV  160 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~~~~~  160 (239)
                      |+|||++.++.+||+|||+++.....    .....||+.|+|||++.+..++.++|||||||++|+|++|..||....  
T Consensus       169 P~NILl~~~g~ikL~DFG~a~~~~~~----~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~--  242 (350)
T d1rdqe_         169 PENLLIDQQGYIQVTDFGFAKRVKGR----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ--  242 (350)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECSSC----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--
T ss_pred             HHHcccCCCCCEEeeeceeeeecccc----cccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcC--
Confidence            99999999999999999999876432    235679999999999999999999999999999999999999985322  


Q ss_pred             ccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHH
Q 044155          161 HDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRP-----SMVDVAK  227 (239)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~ell~  227 (239)
                                         .......+.......  +...++++.++|.+||..||.+|+     |++++++
T Consensus       243 -------------------~~~~~~~i~~~~~~~--p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         243 -------------------PIQIYEKIVSGKVRF--PSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             -------------------HHHHHHHHHHCCCCC--CTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             -------------------HHHHHHHHhcCCCCC--CccCCHHHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence                               111222222222111  124567789999999999999994     8999986

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-45  Score=289.35  Aligned_cols=216  Identities=19%  Similarity=0.178  Sum_probs=156.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.+++..++||||+.++++..+....     ..+++..+..++.||+.||.|||   +++++|||||
T Consensus        56 ~l~hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~~~~~~~-----~~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDiK  127 (299)
T d1ua2a_          56 ELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNS-----LVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLK  127 (299)
T ss_dssp             HCCCTTBCCEEEEECCTTCCEEEEECCSEEHHHHHTTCC-----SSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred             hCCCCCEeEEEeeeccCCceeehhhhhcchHHhhhhhcc-----cCCCHHHHHHHHHHHHHHHHHhh---ccceecccCC
Confidence            378999999999999999999999999977666555433     56888999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+|||++.++.+||+|||++....... .......||+.|+|||++... .++.++|||||||++|||++|..||....+
T Consensus       128 p~NIli~~~~~~KL~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~  206 (299)
T d1ua2a_         128 PNNLLLDENGVLKLADFGLAKSFGSPN-RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSD  206 (299)
T ss_dssp             GGGEEECTTCCEEECCCGGGSTTTSCC-CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             cceEEecCCCccccccCccccccCCCc-ccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCH
Confidence            999999999999999999997654322 123345689999999998754 579999999999999999999999865433


Q ss_pred             cccccccchhhhhhhhhccchhhhhhh---h-hhcCCCcH---HHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDH---I-VVEDVSSI---EKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~---~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .......... ... .....+......   . ........   .....++.+.+|+.+||+.||++||||+|+++
T Consensus       207 ~~~l~~i~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         207 LDQLTRIFET-LGT-PTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             HHHHHHHHHH-HCC-CCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHh-cCC-CChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence            2111000000 000 000000000000   0 00000000   00133567899999999999999999999986

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-44  Score=286.11  Aligned_cols=208  Identities=19%  Similarity=0.342  Sum_probs=164.4

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCC-----CCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQ-----PHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~-----~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++|||||+++|++...+..++||||+++|+|.+++.....     .....+++..+..++.|++.||.|||   +++|+
T Consensus        79 ~l~h~nIv~~~~~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH---~~~iv  155 (308)
T d1p4oa_          79 EFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFV  155 (308)
T ss_dssp             GCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCB
T ss_pred             HcCCCCEeeeeeEEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHh---hCCee
Confidence            47999999999999999999999999999999998874311     11134688899999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCc-ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCC-CC
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGET-HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW-DV  153 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~-~p  153 (239)
                      ||||||+|||++.++.+||+|||+++....... .......+++.|+|||.+.+..++.++||||||+++|||+||. .|
T Consensus       156 HrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p  235 (308)
T d1p4oa_         156 HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP  235 (308)
T ss_dssp             CSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCT
T ss_pred             eceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCC
Confidence            999999999999999999999999976543322 2233446899999999999999999999999999999999985 45


Q ss_pred             cccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHH
Q 044155          154 SDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQIY  233 (239)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~l~  233 (239)
                      |....                     ..+....+..+.. ...+...+..+.++|.+||+.||.+|||+++|++.|++..
T Consensus       236 ~~~~~---------------------~~~~~~~i~~~~~-~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~  293 (308)
T d1p4oa_         236 YQGLS---------------------NEQVLRFVMEGGL-LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEM  293 (308)
T ss_dssp             TTTSC---------------------HHHHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred             CCCCC---------------------HHHHHHHHHhCCC-CCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence            43221                     1122222211111 1112245577999999999999999999999999987653

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-44  Score=283.73  Aligned_cols=217  Identities=17%  Similarity=0.194  Sum_probs=158.0

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++|||||++++++.+++..++||||+. +++.+++.....   ..+++..+..++.|++.||+|||   +++|+|||||
T Consensus        57 ~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~-~~~~~~~~~~~~---~~l~e~~~~~~~~qil~~L~yLH---~~~IiHrDiK  129 (298)
T d1gz8a_          57 ELNHPNIVKLLDVIHTENKLYLVFEFLH-QDLKKFMDASAL---TGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLK  129 (298)
T ss_dssp             TCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHTTT---TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCcEEEeccccccccceeEEEeecC-Cchhhhhhhhcc---cCCCHHHHHHHHHHHHHHHHHhh---cCCEEccccC
Confidence            5799999999999999999999999997 566566654433   56899999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+|||++.++.+||+|||.++...... .......||+.|+|||.+.... .+.++|||||||++|+|++|+.||.....
T Consensus       130 peNIl~~~~~~~kl~DFG~a~~~~~~~-~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~  208 (298)
T d1gz8a_         130 PQNLLINTEGAIKLADFGLARAFGVPV-RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE  208 (298)
T ss_dssp             GGGEEECTTSCEEECSTTHHHHHCCCS-BCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             chheeecccCcceeccCCcceeccCCc-ccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCH
Confidence            999999999999999999997664322 2233557899999999877655 57899999999999999999999975432


Q ss_pred             cccccccchhhhhhhhhccchhhhhh-----hhhhcCCCcHH---HHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVD-----HIVVEDVSSIE---KEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .......+...  .......+.....     ...........   ....++++.+|+.+||+.||++|||++|+++
T Consensus       209 ~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~  282 (298)
T d1gz8a_         209 IDQLFRIFRTL--GTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA  282 (298)
T ss_dssp             HHHHHHHHHHH--CCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHhc--CCCchhhccccccccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence            11110000000  0000000000000     00000000001   1134567899999999999999999999987

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-44  Score=278.43  Aligned_cols=185  Identities=18%  Similarity=0.312  Sum_probs=151.8

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccC-CChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQY-GTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~-~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      .|||||++++++.+.+..++|||++.+ +++.+++...     ..+++..++.++.|++.||.|||   +++|+||||||
T Consensus        67 ~h~nIv~~~~~~~~~~~~~lv~e~~~~~~~l~~~~~~~-----~~l~e~~~~~~~~qi~~al~~lH---~~~iiHrDiKp  138 (273)
T d1xwsa_          67 GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITER-----GALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKD  138 (273)
T ss_dssp             SSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSG
T ss_pred             CCCCccEEEEEEeeCCeEEEEEEeccCcchHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCccccCcc
Confidence            499999999999999999999999975 5788888765     56899999999999999999999   89999999999


Q ss_pred             cceeecCC-CceeEcccccccccCCCCcceeecccccccccCccccccCCc-ccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           82 SCILFNEE-NVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVF-NEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        82 ~nil~~~~-~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      +||+++.+ +.+||+|||++......   ......||+.|+|||++.+..+ +.++|||||||++|+|++|..||.....
T Consensus       139 ~NIll~~~~~~vkl~DFG~a~~~~~~---~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~  215 (273)
T d1xwsa_         139 ENILIDLNRGELKLIDFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE  215 (273)
T ss_dssp             GGEEEETTTTEEEECCCTTCEECCSS---CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH
T ss_pred             cceEEecCCCeEEECccccceecccc---cccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchH
Confidence            99999854 78999999999765332   2345679999999999987665 5778999999999999999999854221


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      .                       ......  ..    ...++++.++|.+||+.||++|||++|+++
T Consensus       216 i-----------------------~~~~~~--~~----~~~s~~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         216 I-----------------------IRGQVF--FR----QRVSSECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             H-----------------------HHCCCC--CS----SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             H-----------------------hhcccC--CC----CCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            0                       000000  00    123467889999999999999999999987

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-43  Score=280.31  Aligned_cols=217  Identities=18%  Similarity=0.192  Sum_probs=153.6

Q ss_pred             CCCcccceeeEEEEeC-----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            2 MSHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         2 l~H~niv~l~~~~~~~-----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      ++||||++++++|...     ...+++||++.++++........    ..+++..++.++.|++.||+|||   +++|+|
T Consensus        67 ~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~qi~~aL~yLH---~~~ivH  139 (305)
T d1blxa_          67 FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPE----PGVPTETIKDMMFQLLRGLDFLH---SHRVVH  139 (305)
T ss_dssp             TCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCT----TCSCHHHHHHHHHHHHHHHHHHH---HTTCCC
T ss_pred             cCCCCcceeeeeecccccccCceEEEEEEeccCCchhhhhhccC----CCCCHHHHHHHHHHHHHHHHHHH---hCCEEe
Confidence            4799999999998642     35789999998766644433322    56889999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCccc
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVSDL  156 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~~~  156 (239)
                      |||||+|||++.++.+||+|||++......  .......||+.|+|||++.+..++.++||||+||++|||++|..||..
T Consensus       140 rDiKp~NILi~~~~~~kl~dfg~~~~~~~~--~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~  217 (305)
T d1blxa_         140 RDLKPQNILVTSSGQIKLADFGLARIYSFQ--MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRG  217 (305)
T ss_dssp             CCCCGGGEEECTTCCEEECSCCSCCCCCGG--GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             cCCCccEEEEcCCCCeeecchhhhhhhccc--ccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCC
Confidence            999999999999999999999998654322  234466799999999999999999999999999999999999999975


Q ss_pred             ccccccccccchhh---hhhhhhc-cchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          157 VKDVHDLVCPFSEY---LKNCFED-NRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       157 ~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..............   ....+.. .......................++.+.+|+.+||+.||++||||+|+++
T Consensus       218 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~  292 (305)
T d1blxa_         218 SSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  292 (305)
T ss_dssp             SSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            43221110000000   0000000 00000000000000000011134567889999999999999999999986

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.1e-42  Score=274.12  Aligned_cols=214  Identities=17%  Similarity=0.216  Sum_probs=152.6

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+.+..++++|++.++.+..+....     ..+++..+..++.||+.||+|||   +.+|+|||||
T Consensus        56 ~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~-----~~l~~~~~~~i~~qi~~~L~~LH---~~~IvHrDiK  127 (286)
T d1ob3a_          56 ELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCE-----GGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLK  127 (286)
T ss_dssp             GCCCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHTST-----TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCC
T ss_pred             hCCCCcEEeeeeecccCCceeEEEEeehhhhHHHHHhhc-----CCcchhhhHHHHHHHHHHHHHhc---cCcEEecCCC
Confidence            479999999999999999999999999865555554433     67999999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+|||++.++.+|++|||.+....... .......+++.|+|||.+.+. .++.++||||||+++|||++|+.||.....
T Consensus       128 p~NIll~~~~~~kl~DfG~a~~~~~~~-~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~  206 (286)
T d1ob3a_         128 PQNLLINREGELKIADFGLARAFGIPV-RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSE  206 (286)
T ss_dssp             GGGEEECTTSCEEECCTTHHHHHCC----------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             CceeeEcCCCCEEecccccceecccCc-cccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCH
Confidence            999999999999999999987654322 223344688999999998764 578999999999999999999999965432


Q ss_pred             cccccccchhhhhhhh--hccchhhhhh------hhhhcCC--CcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCF--EDNRFTEIVD------HIVVEDV--SSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ......    ......  ....+.....      .......  ........++.+.+||.+||+.||++|||++|+++
T Consensus       207 ~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         207 ADQLMR----IFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             HHHHHH----HHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHH----HHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            111100    000000  0000000000      0000000  00011234567889999999999999999999984

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-42  Score=276.55  Aligned_cols=219  Identities=19%  Similarity=0.213  Sum_probs=150.6

Q ss_pred             CCCCcccceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||++++++|....      ..++||||++++ +.+.+..... ....+++..++.++.||+.||+|||   +++|
T Consensus        69 ~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~-~~~~l~~~~~-~~~~l~~~~~~~i~~qil~aL~yLH---~~~I  143 (350)
T d1q5ka_          69 KLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPET-VYRVARHYSR-AKQTLPVIYVKLYMYQLFRSLAYIH---SFGI  143 (350)
T ss_dssp             HCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEE-HHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHH---TTTE
T ss_pred             hcCCCCCCcEEEEEEecCccCCceEEEEEEeccCCc-cHHHHHhhhh-ccCCCCHHHHHHHHHHHHHHHHHHH---hcCC
Confidence            379999999999986432      368999999854 4343332100 0157899999999999999999999   9999


Q ss_pred             eeccccCcceeecCCC-ceeEcccccccccCCCCcceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCC
Q 044155           75 VFRNFKTSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWD  152 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~  152 (239)
                      +||||||+|||++.++ .+||+|||++.......  ......|++.|+|||.+.+ ..++.++||||+||++|||++|..
T Consensus       144 iHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~  221 (350)
T d1q5ka_         144 CHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE--PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP  221 (350)
T ss_dssp             ECCCCCGGGEEECTTTCCEEECCCTTCEECCTTS--CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSC
T ss_pred             cccCCCcceEEEecCCCceeEecccchhhccCCc--ccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCC
Confidence            9999999999999775 89999999987664332  2334578999999998765 568999999999999999999999


Q ss_pred             Ccccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 044155          153 VSDLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDV  225 (239)
Q Consensus       153 p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~el  225 (239)
                      ||...........       +..+........ ......................++++.+|+.+||+.||.+||||.|+
T Consensus       222 pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~  300 (350)
T d1q5ka_         222 IFPGDSGVDQLVEIIKVLGTPTREQIREMNPN-YTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEA  300 (350)
T ss_dssp             SSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC----CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhCCChHHhhhhhccc-hhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence            9975433211110       000000000000 00000000000000000011345678899999999999999999999


Q ss_pred             HH
Q 044155          226 AK  227 (239)
Q Consensus       226 l~  227 (239)
                      ++
T Consensus       301 L~  302 (350)
T d1q5ka_         301 CA  302 (350)
T ss_dssp             HT
T ss_pred             hc
Confidence            86

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-40  Score=263.86  Aligned_cols=211  Identities=16%  Similarity=0.178  Sum_probs=156.2

Q ss_pred             CCCcccc-eeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MSHNHIL-KLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~H~niv-~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++|+|++ .+.+++.++...++||||+. +++.+.+....    ..++...+..++.|++.||+|||   +++|+|||||
T Consensus        59 l~~~~~i~~~~~~~~~~~~~~ivme~~~-~~l~~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH---~~~iiHrDiK  130 (299)
T d1ckia_          59 MQGGVGIPTIRWCGAEGDYNVMVMELLG-PSLEDLFNFCS----RKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVK  130 (299)
T ss_dssp             STTSTTCCCEEEEEEETTEEEEEEECCC-CBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred             ccCCCcccEEEEEEecCCEEEEEEEEcC-Cchhhhhhhcc----CCCcHHHHHHHHHHHHHHHHHHH---HCCeeeccCC
Confidence            5566655 44555667778889999995 78877766543    56899999999999999999999   8999999999


Q ss_pred             CcceeecC---CCceeEcccccccccCCCCc------ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCC
Q 044155           81 TSCILFNE---ENVAKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        81 ~~nil~~~---~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      |+||+++.   +..++++|||+++.......      .......||+.|+|||.+.+..++.++||||||+++|||++|.
T Consensus       131 p~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~  210 (299)
T d1ckia_         131 PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS  210 (299)
T ss_dssp             GGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             HhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCC
Confidence            99998764   44699999999987643321      1234557999999999999999999999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||...........              ............ ........++++.+++..||+.||.+||+++++.+.|+.
T Consensus       211 ~P~~~~~~~~~~~~--------------~~~~~~~~~~~~-~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  275 (299)
T d1ckia_         211 LPWQGLKAATKRQK--------------YERISEKKMSTP-IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRN  275 (299)
T ss_dssp             CTTCCCC---------------------HHHHHHHHHHSC-HHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHH
T ss_pred             CcccccchHHHHHH--------------HHHhhcccCCCC-hhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHH
Confidence            99865442211110              000000000000 001112455778999999999999999999999999988


Q ss_pred             HHHh
Q 044155          232 IYRS  235 (239)
Q Consensus       232 l~~~  235 (239)
                      +...
T Consensus       276 ~~~~  279 (299)
T d1ckia_         276 LFHR  279 (299)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2e-40  Score=261.78  Aligned_cols=212  Identities=12%  Similarity=0.060  Sum_probs=164.6

Q ss_pred             CCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccCc
Q 044155            3 SHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKTS   82 (239)
Q Consensus         3 ~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~~   82 (239)
                      +|+|++.+++++.++...++||||+ +++|.+++....    ..++...+..++.|++.||.|||   +++|+||||||+
T Consensus        59 ~~~~i~~~~~~~~~~~~~~~vme~~-~~~l~~~~~~~~----~~~~~~~~~~i~~q~~~~l~~lH---~~giiHrDiKp~  130 (293)
T d1csna_          59 GCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCG----RKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPD  130 (293)
T ss_dssp             TCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTT----TCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGG
T ss_pred             CCCCCCEEEEEeecCCccEEEEEec-CCCHHHHHHhhc----cchhhHHHHHHHHHHHHHHHHHH---HCCceeccCCcc
Confidence            3589999999999999999999999 589999987653    46889999999999999999999   999999999999


Q ss_pred             ceeecC-----CCceeEcccccccccCCCCc------ceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCC
Q 044155           83 CILFNE-----ENVAKLFDFSLSISIPEGET------HITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGW  151 (239)
Q Consensus        83 nil~~~-----~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~  151 (239)
                      ||+++.     ++.++|+|||+++.......      .......||+.|+|||++.+..++.++||||||+++|||++|.
T Consensus       131 Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~  210 (293)
T d1csna_         131 NFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGS  210 (293)
T ss_dssp             GEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             ceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCC
Confidence            999975     56799999999987543211      1234567999999999999999999999999999999999999


Q ss_pred             CCcccccccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 044155          152 DVSDLVKDVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAKKLRQ  231 (239)
Q Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~~L~~  231 (239)
                      .||...........     ..         ...... ............++++.+++..||..+|.+||+++.+.+.|++
T Consensus       211 ~Pf~~~~~~~~~~~-----~~---------~i~~~~-~~~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~  275 (293)
T d1csna_         211 LPWQGLKAATNKQK-----YE---------RIGEKK-QSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSK  275 (293)
T ss_dssp             CTTSSCCSCCHHHH-----HH---------HHHHHH-HHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHH
T ss_pred             CcCCCccchhHHHH-----HH---------HHHhcc-CCCChHHhcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHH
Confidence            99964332111100     00         000000 0000000112345678999999999999999999999999999


Q ss_pred             HHHhhc
Q 044155          232 IYRSLS  237 (239)
Q Consensus       232 l~~~~~  237 (239)
                      +..+..
T Consensus       276 ~~~~~~  281 (293)
T d1csna_         276 VLERLN  281 (293)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            887654

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-41  Score=269.85  Aligned_cols=199  Identities=21%  Similarity=0.295  Sum_probs=158.3

Q ss_pred             CCC-cccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            2 MSH-NHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         2 l~H-~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      ++| |||+++++++.+....+++|||+.+|+|.+++...     ..++...+..++.|++.||.|+|   +.+++|||||
T Consensus        85 l~h~pnIv~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~-----~~~~e~~~~~~~~Qi~~al~~lH---~~~ivHrDiK  156 (322)
T d1vzoa_          85 IRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR-----ERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIK  156 (322)
T ss_dssp             HHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCC
T ss_pred             ccCCCeEEEeeeeeccCCceeeeeecccccHHHHHHHhc-----ccccHHHHHHHHHHHHHHHHHhh---cCCEEeccCC
Confidence            445 89999999999999999999999999999999876     56788999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC--CcccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG--VFNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+||+++.++.++|+|||++...............|++.|+|||.+.+.  .++.++|||||||++|+|++|..||....
T Consensus       157 p~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~  236 (322)
T d1vzoa_         157 LENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG  236 (322)
T ss_dssp             GGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTT
T ss_pred             ccceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999876644444444566789999999998764  46789999999999999999999986443


Q ss_pred             ccccccccchhhhhhhhhccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHH
Q 044155          159 DVHDLVCPFSEYLKNCFEDNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKDSPADRPS-----MVDVAK  227 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~ell~  227 (239)
                      .....                 .............  .+...++.+.+++.+||+.||.+|||     ++|+++
T Consensus       237 ~~~~~-----------------~~i~~~~~~~~~~--~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         237 EKNSQ-----------------AEISRRILKSEPP--YPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             SCCCH-----------------HHHHHHHHHCCCC--CCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             HHHHH-----------------HHHHHhcccCCCC--CcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence            21111                 1111111111111  11245678899999999999999995     788875

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-41  Score=271.55  Aligned_cols=211  Identities=16%  Similarity=0.175  Sum_probs=155.0

Q ss_pred             CCCCcccceeeEEEEeCC------CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLETP------IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~------~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++|||||+++++|...+      .+++||||+ +.+|..+++.      ..+++..++.++.|++.||.|||   +++|
T Consensus        73 ~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~------~~l~~~~~~~~~~qi~~aL~~LH---~~~I  142 (346)
T d1cm8a_          73 HMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH------EKLGEDRIQFLVYQMLKGLRYIH---AAGI  142 (346)
T ss_dssp             HCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred             hcCCCCeeEEEEEeccCccccccceEEEEEecc-cccHHHHHHh------ccccHHHHHHHHHHHHHHHHHHH---hCCC
Confidence            379999999999998654      469999999 4788877765      46899999999999999999999   8999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccC-CcccccchhhhhhHHHHHhcCCCC
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      +||||||+|||++.++.+|++|||++......    .....||+.|+|||++.+. .++.++||||+||++|+|++|..|
T Consensus       143 iHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~p  218 (346)
T d1cm8a_         143 IHRDLKPGNLAVNEDCELKILDFGLARQADSE----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTL  218 (346)
T ss_dssp             ECCCCCGGGEEECTTCCEEECCCTTCEECCSS----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred             cccccCcchhhcccccccccccccceeccCCc----cccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCC
Confidence            99999999999999999999999999765433    2356689999999998764 578999999999999999999999


Q ss_pred             cccccccccccc-------cchhhhhhhhhccchhhhhhhhhhc---CCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          154 SDLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVE---DVSSIEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       154 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      |...........       +..+... .... ............   ..........++.+.+||.+||..||.+|||++
T Consensus       219 f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~  296 (346)
T d1cm8a_         219 FKGSDHLDQLKEIMKVTGTPPAEFVQ-RLQS-DEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAG  296 (346)
T ss_dssp             SCCSSHHHHHHHHHHHHCCCCHHHHH-TCSC-HHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCChHHHHHHHHhccCCCcHHHHh-hhcc-hhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHH
Confidence            975432211100       0000000 0000 000000000000   000001123456788999999999999999999


Q ss_pred             HHHH
Q 044155          224 DVAK  227 (239)
Q Consensus       224 ell~  227 (239)
                      |+++
T Consensus       297 eiL~  300 (346)
T d1cm8a_         297 EALA  300 (346)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9987

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=264.79  Aligned_cols=218  Identities=16%  Similarity=0.209  Sum_probs=150.6

Q ss_pred             CCCCcccceeeEEEEe--------CCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCC
Q 044155            1 QMSHNHILKLIGCCLE--------TPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPR   72 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~--------~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~   72 (239)
                      +++||||+++++++..        .+..++|||++.++.+. ......    ..++...++.++.|++.||.|||   ++
T Consensus        65 ~l~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~-~~~~~~----~~~~~~~~~~i~~qil~~l~~lH---~~  136 (318)
T d3blha1          65 LLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAG-LLSNVL----VKFTLSEIKRVMQMLLNGLYYIH---RN  136 (318)
T ss_dssp             HCCCTTBCCEEEEEEC----------CEEEEEECCCEEHHH-HHTCTT----CCCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HhcCCCccceEeeeecccccccccCceEEEEEeccCCCccc-hhhhcc----cccccHHHHHHHHHHHHHHHHhc---cC
Confidence            3789999999999864        34678999999865554 443322    56889999999999999999999   89


Q ss_pred             CeeeccccCcceeecCCCceeEcccccccccCCCCc---ceeecccccccccCccccccC-CcccccchhhhhhHHHHHh
Q 044155           73 PIVFRNFKTSCILFNEENVAKLFDFSLSISIPEGET---HITDTVMGTLGYCAPEYMRTG-VFNEKSNVFSFSVFLFELL  148 (239)
Q Consensus        73 ~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~l~~~~  148 (239)
                      +|+||||||+|||++.++.+|++|||++........   .......||+.|+|||++.+. .++.++|||||||++|+|+
T Consensus       137 ~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~  216 (318)
T d3blha1         137 KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMW  216 (318)
T ss_dssp             TEECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHH
T ss_pred             CEEecCcCchheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHh
Confidence            999999999999999999999999999876543221   122345689999999998765 6899999999999999999


Q ss_pred             cCCCCccccccccccccc------chhhhhhhhhccchhhhhhhhhhcCCCcH----HHHHHHHHHHHHHhhhcCCCCCC
Q 044155          149 TGWDVSDLVKDVHDLVCP------FSEYLKNCFEDNRFTEIVDHIVVEDVSSI----EKEQQLHASAQVTFECIKDSPAD  218 (239)
Q Consensus       149 ~g~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~li~~cl~~dp~~  218 (239)
                      +|+.||....+.......      +.................... .......    .....++.+.+||.+||+.||++
T Consensus       217 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~  295 (318)
T d3blha1         217 TRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELV-KGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQ  295 (318)
T ss_dssp             HSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CC-SSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTT
T ss_pred             hCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhccc-ccccccchhhhccccCCHHHHHHHHHHCcCChhH
Confidence            999999754322111100      000000000000000000000 0000000    01123456789999999999999


Q ss_pred             CCCHHHHHH
Q 044155          219 RPSMVDVAK  227 (239)
Q Consensus       219 Rps~~ell~  227 (239)
                      ||||+|+++
T Consensus       296 R~sa~elL~  304 (318)
T d3blha1         296 RIDSDDALN  304 (318)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHc
Confidence            999999986

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-41  Score=269.67  Aligned_cols=217  Identities=16%  Similarity=0.187  Sum_probs=153.1

Q ss_pred             CCCCcccceeeEEEEeCC----CceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeee
Q 044155            1 QMSHNHILKLIGCCLETP----IPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVF   76 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~----~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H   76 (239)
                      +|+||||+++++++....    ..+++++++.+|+|.+++..      ..+++..++.++.|++.||+|||   +++|+|
T Consensus        62 ~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~~~l~~------~~l~~~~i~~i~~qil~al~yLH---~~~iiH  132 (345)
T d1pmea_          62 RFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKT------QHLSNDHICYFLYQILRGLKYIH---SANVLH  132 (345)
T ss_dssp             HCCCTTBCCCCEEECCSSTTTCCCEEEEEECCCEEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH---HTTEEC
T ss_pred             HcCCCCCCcEEEEEeeccccccceEEEEEeecCCchhhhhhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCCcC
Confidence            479999999999997653    23556677778999999975      45899999999999999999999   899999


Q ss_pred             ccccCcceeecCCCceeEcccccccccCCCCc--ceeecccccccccCcccccc-CCcccccchhhhhhHHHHHhcCCCC
Q 044155           77 RNFKTSCILFNEENVAKLFDFSLSISIPEGET--HITDTVMGTLGYCAPEYMRT-GVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        77 ~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      |||||+|||++.++.+||+|||++........  .......||+.|+|||++.. ..++.++||||+|+++|+|++|..|
T Consensus       133 RDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~p  212 (345)
T d1pmea_         133 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPI  212 (345)
T ss_dssp             CCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCC
Confidence            99999999999999999999999876533221  12345568999999999854 5578899999999999999999999


Q ss_pred             cccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCCCcH--HHHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 044155          154 SDLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVSSI--EKEQQLHASAQVTFECIKDSPADRPSMVD  224 (239)
Q Consensus       154 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~~e  224 (239)
                      |...........       +......... ...................  .....+.++.+|+.+||+.||.+|||+.|
T Consensus       213 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e  291 (345)
T d1pmea_         213 FPGKHYLDQLNHILGILGSPSQEDLNCII-NLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQ  291 (345)
T ss_dssp             CCCSSHHHHHHHHHHHHCSCCHHHHHTCC-CHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             CCCCCHHHHHHHHhhhccCCChhhhhhhh-hhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHH
Confidence            864332110000       0000000000 0000000000000000000  01133467889999999999999999999


Q ss_pred             HHH
Q 044155          225 VAK  227 (239)
Q Consensus       225 ll~  227 (239)
                      +++
T Consensus       292 ~L~  294 (345)
T d1pmea_         292 ALA  294 (345)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            986

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-40  Score=263.58  Aligned_cols=217  Identities=16%  Similarity=0.137  Sum_probs=158.2

Q ss_pred             CCCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            1 QMSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      +++||||+++++++.+....+++++++.+++|..++...     ..++...+..++.|++.||+|||   +++|+|||||
T Consensus        57 ~l~h~niv~~~~~~~~~~~~~iv~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~q~~~aL~~lH---~~~IvHrDiK  128 (292)
T d1unla_          57 ELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCN-----GDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLK  128 (292)
T ss_dssp             TCCCTTBCCEEEEEECSSEEEEEEECCSEEHHHHHHHTT-----TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             hcCcCCEEeeccccccccceeEEeeeccccccccccccc-----cccchhHHHHHHHHHHHHHHHhh---cCCEeeeccc
Confidence            479999999999999999999999999988888877655     57889999999999999999999   8999999999


Q ss_pred             CcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCCCcccccc
Q 044155           81 TSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDVSDLVKD  159 (239)
Q Consensus        81 ~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~p~~~~~~  159 (239)
                      |+|||++.++.+||+|||.+....... .......+++.|+|||.+.... ++.++|||||||++|+|++|+.||....+
T Consensus       129 P~NIli~~~~~~kl~DFG~a~~~~~~~-~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~  207 (292)
T d1unla_         129 PQNLLINRNGELKLANFGLARAFGIPV-RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND  207 (292)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSCC-SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSS
T ss_pred             CcccccccCCceeeeecchhhcccCCC-ccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCC
Confidence            999999999999999999997754322 2233445678899999887655 68999999999999999999999754332


Q ss_pred             cccccccchhhhhhhhhccchhhhhhhh--------hhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 044155          160 VHDLVCPFSEYLKNCFEDNRFTEIVDHI--------VVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ell~  227 (239)
                      ..+...........+. ...+.......        .............++.+.+|+.+||+.||.+||||+|+++
T Consensus       208 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         208 VDDQLKRIFRLLGTPT-EEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             HHHHHHHHHHHHCCCC-TTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHHHhhcCCCC-hhhhhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            2211110000000000 00000000000        0000000111234567889999999999999999999986

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=2.7e-40  Score=265.17  Aligned_cols=212  Identities=16%  Similarity=0.155  Sum_probs=152.3

Q ss_pred             CCcccceeeEEEEeC--CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeecccc
Q 044155            3 SHNHILKLIGCCLET--PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFK   80 (239)
Q Consensus         3 ~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk   80 (239)
                      .||||+++++++...  ...++||||+.+++|....        ..+++..++.++.||+.||.|||   +++|+|||||
T Consensus        88 ~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~--------~~l~e~~i~~i~~qil~aL~~LH---~~gIvHrDiK  156 (328)
T d3bqca1          88 GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLY--------QTLTDYDIRFYMYEILKALDYCH---SMGIMHRDVK  156 (328)
T ss_dssp             TSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTT--------TSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred             CCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHh--------cCCCHHHHHHHHHHHHHHHHHHh---hccccccccc
Confidence            499999999999854  4688999999999987654        46889999999999999999999   8999999999


Q ss_pred             CcceeecCCC-ceeEcccccccccCCCCcceeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCCCccccc
Q 044155           81 TSCILFNEEN-VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDVSDLVK  158 (239)
Q Consensus        81 ~~nil~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~p~~~~~  158 (239)
                      |+|||++.++ .++|+|||++.......  ......+|+.|+|||.+.+.. ++.++||||+|+++|++++|+.||....
T Consensus       157 p~NILi~~~~~~vkl~DFG~a~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~  234 (328)
T d3bqca1         157 PHNVMIDHEHRKLRLIDWGLAEFYHPGQ--EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH  234 (328)
T ss_dssp             GGGEEEETTTTEEEECCGGGCEECCTTC--CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred             ccceEEcCCCCeeeecccccceeccCCC--cccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCc
Confidence            9999998765 68999999997654332  234556899999999987654 7999999999999999999999986543


Q ss_pred             ccccccccchhhhhhhh-------hccchhhhhhhh--------hhcCCCcHHHHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 044155          159 DVHDLVCPFSEYLKNCF-------EDNRFTEIVDHI--------VVEDVSSIEKEQQLHASAQVTFECIKDSPADRPSMV  223 (239)
Q Consensus       159 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  223 (239)
                      +..............+.       ............        .............++++.+||.+||..||.+|||++
T Consensus       235 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~  314 (328)
T d3bqca1         235 DNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAR  314 (328)
T ss_dssp             SHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             hhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHH
Confidence            32111000000000000       000000000000        000011111123456789999999999999999999


Q ss_pred             HHHH
Q 044155          224 DVAK  227 (239)
Q Consensus       224 ell~  227 (239)
                      |+++
T Consensus       315 e~L~  318 (328)
T d3bqca1         315 EAME  318 (328)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9986

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-39  Score=264.16  Aligned_cols=213  Identities=18%  Similarity=0.222  Sum_probs=149.8

Q ss_pred             CCCCcccceeeEEEEeC------CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCe
Q 044155            1 QMSHNHILKLIGCCLET------PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPI   74 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~------~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i   74 (239)
                      +++||||++++++|...      +..++||||+. +++.+.+.       ..++...++.++.|++.||.|||   +.||
T Consensus        72 ~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~-~~l~~~~~-------~~~~~~~i~~~~~qil~gl~~LH---~~gi  140 (355)
T d2b1pa1          72 CVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMD-ANLCQVIQ-------MELDHERMSYLLYQMLCGIKHLH---SAGI  140 (355)
T ss_dssp             HCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCS-EEHHHHHT-------SCCCHHHHHHHHHHHHHHHHHHH---HTTC
T ss_pred             hcCCCCeeEEEEEEecccccccCceeEEEEeccc-hHHHHhhh-------cCCCHHHHHHHHHHHHHHHHHhh---hccc
Confidence            37899999999999643      56799999997 45555553       45889999999999999999999   8999


Q ss_pred             eeccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCCc
Q 044155           75 VFRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        75 ~H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      +||||||+|||++.++.++++|||++.......  ......+|+.|+|||++.+..++.++||||+||++++|++|+.||
T Consensus       141 iHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~--~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF  218 (355)
T d2b1pa1         141 IHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILF  218 (355)
T ss_dssp             CCSCCCGGGEEECTTCCEEECCCCC-----------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred             ccccCCccccccccccceeeechhhhhcccccc--ccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCC
Confidence            999999999999999999999999876653322  234556899999999999999999999999999999999999999


Q ss_pred             ccccccccc-------cccchhhhhhh-------hh------ccchhhhhhhhhhcCCCcHHHHHHHHHHHHHHhhhcCC
Q 044155          155 DLVKDVHDL-------VCPFSEYLKNC-------FE------DNRFTEIVDHIVVEDVSSIEKEQQLHASAQVTFECIKD  214 (239)
Q Consensus       155 ~~~~~~~~~-------~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  214 (239)
                      .........       ..+..+.....       ..      ............ ...........++.+.+|+.+||..
T Consensus       219 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~dll~~mL~~  297 (355)
T d2b1pa1         219 PGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSL-FPADSEHNKLKASQARDLLSKMLVI  297 (355)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGG-SCCSSHHHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCcccccccccccccccc-ccccccccccCCHHHHHHHHHHCcC
Confidence            643321110       00111111000       00      001111111111 1112233446778899999999999


Q ss_pred             CCCCCCCHHHHHH
Q 044155          215 SPADRPSMVDVAK  227 (239)
Q Consensus       215 dp~~Rps~~ell~  227 (239)
                      ||++||||+|+++
T Consensus       298 dP~~R~ta~elL~  310 (355)
T d2b1pa1         298 DPAKRISVDDALQ  310 (355)
T ss_dssp             STTTSCCHHHHHT
T ss_pred             ChhHCcCHHHHhc
Confidence            9999999999985

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=257.70  Aligned_cols=212  Identities=18%  Similarity=0.211  Sum_probs=149.5

Q ss_pred             CCCCcccceeeEEEEeC-----CCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCee
Q 044155            1 QMSHNHILKLIGCCLET-----PIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIV   75 (239)
Q Consensus         1 ~l~H~niv~l~~~~~~~-----~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~   75 (239)
                      +++|||||++++++...     ...+++++++.+|+|.+++..      ..+++..++.++.||+.||+|||   +++|+
T Consensus        73 ~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~------~~l~e~~~~~i~~qil~aL~~LH---~~gii  143 (348)
T d2gfsa1          73 HMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC------QKLTDDHVQFLIYQILRGLKYIH---SADII  143 (348)
T ss_dssp             HCCCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHH---HTTCC
T ss_pred             hcCCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhccc------ccccHHHHHHHHHHHHHHHHHHH---hCCCc
Confidence            37899999999998643     344677888889999999864      46899999999999999999999   89999


Q ss_pred             eccccCcceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCC-cccccchhhhhhHHHHHhcCCCCc
Q 044155           76 FRNFKTSCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGV-FNEKSNVFSFSVFLFELLTGWDVS  154 (239)
Q Consensus        76 H~dlk~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~~~~g~~p~  154 (239)
                      ||||||+|||++.++.++++|||.+.....    ......|++.|+|||...+.. ++.++|||||||++|+|++|..||
T Consensus       144 HrDiKp~NILi~~~~~~kl~dfg~a~~~~~----~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF  219 (348)
T d2gfsa1         144 HRDLKPSNLAVNEDCELKILDFGLARHTDD----EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLF  219 (348)
T ss_dssp             CCCCCGGGEEECTTCCEEECCC----CCTG----GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred             ccccCCccccccccccccccccchhcccCc----ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCC
Confidence            999999999999999999999999865422    233556889999999877654 688999999999999999999999


Q ss_pred             ccccccccccc-------cchhhhhhhhhccchhhhhhhhhhcCCCcHH---HHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 044155          155 DLVKDVHDLVC-------PFSEYLKNCFEDNRFTEIVDHIVVEDVSSIE---KEQQLHASAQVTFECIKDSPADRPSMVD  224 (239)
Q Consensus       155 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~cl~~dp~~Rps~~e  224 (239)
                      ...........       +..+.....  ....................   ....++.+.+||.+||+.||.+||||+|
T Consensus       220 ~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e  297 (348)
T d2gfsa1         220 PGTDHIDQLKLILRLVGTPGAELLKKI--SSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQ  297 (348)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCHHHHTTC--CCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             CCCCHHHHHHHHHHhcCCCChHHhhhc--cchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHH
Confidence            65432111100       000000000  00000000000000000000   1134567889999999999999999999


Q ss_pred             HHH
Q 044155          225 VAK  227 (239)
Q Consensus       225 ll~  227 (239)
                      +++
T Consensus       298 lL~  300 (348)
T d2gfsa1         298 ALA  300 (348)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            987

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-34  Score=231.31  Aligned_cols=214  Identities=16%  Similarity=0.177  Sum_probs=143.8

Q ss_pred             CCcccceeeEEEEeC--CCceEEEEEccCCCh-hhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccc
Q 044155            3 SHNHILKLIGCCLET--PIPILVFESVQYGTL-WDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNF   79 (239)
Q Consensus         3 ~H~niv~l~~~~~~~--~~~~iv~e~~~~~sL-~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dl   79 (239)
                      .|+||+++++++...  ...+++++++..+.. .........   ..++...+..++.|++.||.|||+  ..+|+||||
T Consensus        78 ~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~i~~qil~al~~lh~--~~~IvHrDl  152 (362)
T d1q8ya_          78 GANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEH---RGIPLIYVKQISKQLLLGLDYMHR--RCGIIHTDI  152 (362)
T ss_dssp             HHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTT---SCCCHHHHHHHHHHHHHHHHHHHH--TTCEECSCC
T ss_pred             CcCceEEEEEEeeeccccceeeeeeecccccccccccccccc---cCCcHHHHHHHHHHHHHHHHHHhh--hcCcccccC
Confidence            589999999998754  345566666544433 233333222   678899999999999999999993  389999999


Q ss_pred             cCcceeecCCC------ceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhhHHHHHhcCCCC
Q 044155           80 KTSCILFNEEN------VAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSVFLFELLTGWDV  153 (239)
Q Consensus        80 k~~nil~~~~~------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~g~~p  153 (239)
                      ||+|||++.++      .++++|||.+......    .....||+.|+|||++....++.++||||+|+++++|++|+.|
T Consensus       153 Kp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  228 (362)
T d1q8ya_         153 KPENVLMEIVDSPENLIQIKIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFL  228 (362)
T ss_dssp             SGGGEEEEEEETTTTEEEEEECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCC
T ss_pred             ChhHeeeeccCcccccceeeEeecccccccccc----cccccccccccChhhccccCCCccccccchHHHHHHHHHCCCC
Confidence            99999998765      3899999998755322    2355689999999999999999999999999999999999999


Q ss_pred             cccccccccccc------------cch-hhhh------hhhhccchhhh--------hhhhhhcCCCcHHHHHHHHHHHH
Q 044155          154 SDLVKDVHDLVC------------PFS-EYLK------NCFEDNRFTEI--------VDHIVVEDVSSIEKEQQLHASAQ  206 (239)
Q Consensus       154 ~~~~~~~~~~~~------------~~~-~~~~------~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  206 (239)
                      |...........            ... ....      ..+........        .........  ......++.+.+
T Consensus       229 F~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d  306 (362)
T d1q8ya_         229 FEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKY--KFSKDEAKEISD  306 (362)
T ss_dssp             C---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTT--CCCHHHHHHHHH
T ss_pred             CCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhccccc--ccCcccCHHHHH
Confidence            875433211100            000 0000      00000000000        000000000  011356788999


Q ss_pred             HHhhhcCCCCCCCCCHHHHHH
Q 044155          207 VTFECIKDSPADRPSMVDVAK  227 (239)
Q Consensus       207 li~~cl~~dp~~Rps~~ell~  227 (239)
                      |+.+||+.||.+||||+|+++
T Consensus       307 ll~~mL~~dP~~Rpta~e~L~  327 (362)
T d1q8ya_         307 FLSPMLQLDPRKRADAGGLVN  327 (362)
T ss_dssp             HHGGGGCSSTTTCBCHHHHHT
T ss_pred             HHHHHCCCChhHCcCHHHHhc
Confidence            999999999999999999986

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.66  E-value=1.6e-17  Score=121.80  Aligned_cols=117  Identities=14%  Similarity=0.147  Sum_probs=78.2

Q ss_pred             CCCcccceeeEEEEeCCCceEEEEEccCCChhhhhhcCCCCCCCcCCHHHHHHHHHHHHHHHhHHhhCCCCCeeeccccC
Q 044155            2 MSHNHILKLIGCCLETPIPILVFESVQYGTLWDRILGAPQPHFEPLLLKHRLKIAMDIVHALAYLHFGFPRPIVFRNFKT   81 (239)
Q Consensus         2 l~H~niv~l~~~~~~~~~~~iv~e~~~~~sL~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~~~i~H~dlk~   81 (239)
                      +.|++++..+++.    ..+++||++++..+.+            ++......++.|++.++.|||   .++++|+||||
T Consensus        71 l~~~~v~~~~~~~----~~~lvme~~~~~~~~~------------l~~~~~~~i~~ql~~~l~~lH---~~giiHrDiKP  131 (191)
T d1zara2          71 LQGLAVPKVYAWE----GNAVLMELIDAKELYR------------VRVENPDEVLDMILEEVAKFY---HRGIVHGDLSQ  131 (191)
T ss_dssp             TTTSSSCCEEEEE----TTEEEEECCCCEEGGG------------CCCSCHHHHHHHHHHHHHHHH---HTTEECSCCST
T ss_pred             ccCCCcceEEEec----CCEEEEEeeccccccc------------hhhHHHHHHHHHHHHHHHHHh---hCCEEEccCCh
Confidence            5678888776552    2479999998655432            233445578999999999999   89999999999


Q ss_pred             cceeecCCCceeEcccccccccCCCCcceeecccccccccCccccccCCcccccchhhhhh
Q 044155           82 SCILFNEENVAKLFDFSLSISIPEGETHITDTVMGTLGYCAPEYMRTGVFNEKSNVFSFSV  142 (239)
Q Consensus        82 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  142 (239)
                      +|||+++++ ++|+|||.+.........  ......... -.+ +....++.++|+||+.-
T Consensus       132 ~NILv~~~~-~~liDFG~a~~~~~~~~~--~~l~rd~~~-~~~-~f~r~y~~~~d~~s~~~  187 (191)
T d1zara2         132 YNVLVSEEG-IWIIDFPQSVEVGEEGWR--EILERDVRN-IIT-YFSRTYRTEKDINSAID  187 (191)
T ss_dssp             TSEEEETTE-EEECCCTTCEETTSTTHH--HHHHHHHHH-HHH-HHHHHHCCCCCHHHHHH
T ss_pred             hheeeeCCC-EEEEECCCcccCCCCCcH--HHHHHHHHH-HHH-HHcCCCCCcccHHHHHH
Confidence            999999664 889999998665322110  000000000 001 11245788999999753

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.49  E-value=8.3e-05  Score=55.30  Aligned_cols=29  Identities=17%  Similarity=0.222  Sum_probs=24.8

Q ss_pred             CeeeccccCcceeecCCCceeEccccccc
Q 044155           73 PIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        73 ~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      .++|+|+.|.||+++.++.+-|+||+.+.
T Consensus       184 ~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         184 VFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             EEEEeeccCcceeecCCceEEEeechhcc
Confidence            37999999999999987666799998763

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=96.90  E-value=0.00055  Score=50.36  Aligned_cols=29  Identities=7%  Similarity=0.019  Sum_probs=25.1

Q ss_pred             CeeeccccCcceeecCCCceeEccccccc
Q 044155           73 PIVFRNFKTSCILFNEENVAKLFDFSLSI  101 (239)
Q Consensus        73 ~i~H~dlk~~nil~~~~~~~~l~dfg~~~  101 (239)
                      .++|+|+.|.||+++.+..+-|+||+.+.
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhcc
Confidence            48999999999999987667899998763

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=95.79  E-value=0.01  Score=46.46  Aligned_cols=33  Identities=18%  Similarity=0.364  Sum_probs=27.3

Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccccC
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSISIP  104 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~~~  104 (239)
                      ...++|+|+.|.|||++.++ ++++||..+...+
T Consensus       222 ~~~LiHGDl~~gNIlv~~~~-~~vID~E~a~~G~  254 (392)
T d2pula1         222 AETLIHGDLHTGSIFASEHE-TKVIDPEFAFYGP  254 (392)
T ss_dssp             CCEEECSCCCGGGEEECSSC-EEECCCTTCEEEC
T ss_pred             CcceeccCCcCCceeEcCCc-eEEechhhcccCC
Confidence            34699999999999998765 8999998876543

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.21  E-value=0.003  Score=47.95  Aligned_cols=30  Identities=17%  Similarity=0.469  Sum_probs=27.2

Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLS  100 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~  100 (239)
                      ..+++|+|+.++|++++.+...-++||+.+
T Consensus       182 ~~giIHgDl~~dNvl~~~~~v~gvIDF~~~  211 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGDELSGLIDFYFA  211 (316)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTC
T ss_pred             ccccccCCcchhhhhcccccceeEeccccc
Confidence            678999999999999998877789999976

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=87.87  E-value=0.11  Score=39.13  Aligned_cols=30  Identities=10%  Similarity=0.145  Sum_probs=24.2

Q ss_pred             CCCeeeccccCcceeecCCCceeEcccccccc
Q 044155           71 PRPIVFRNFKTSCILFNEENVAKLFDFSLSIS  102 (239)
Q Consensus        71 ~~~i~H~dlk~~nil~~~~~~~~l~dfg~~~~  102 (239)
                      ..+++|+|+.+.|||++++  ..++||+.+..
T Consensus       191 p~~liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         191 TVLRLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             CCEECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             CceeecCCCCcccEEEeCC--ceEEechhccc
Confidence            5679999999999999743  45899997644

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.11  E-value=0.18  Score=39.09  Aligned_cols=15  Identities=13%  Similarity=0.350  Sum_probs=13.2

Q ss_pred             eeeccccCcceeecC
Q 044155           74 IVFRNFKTSCILFNE   88 (239)
Q Consensus        74 i~H~dlk~~nil~~~   88 (239)
                      ++|+|+.+.||++..
T Consensus       220 ~CHnDL~~~NiL~~~  234 (395)
T d1nw1a_         220 FCHNDLQEGNILLPK  234 (395)
T ss_dssp             EECSCCCGGGEEEEC
T ss_pred             EEecCCCcccEeecc
Confidence            579999999999854