Citrus Sinensis ID: 044170

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
LSKQTAARRGLLNAESGQCEATNPIDNCWRCKENWAENRQALAGCALGFGIKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNQNTKEVTKRMNCSPEEGKSWIWRSEGDVFLNGAYFNSSGDPKKQIEYQMDDVIKPKPGTEVERITKFAGALVCKPGQKC
cccccHHHHcccccccccccccccccccccccccHHHHccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHccccEEEEEEEcEEEEEccEEEEccccEEEccccEEEEEccccEEEEEEccEEEEccEEEccccccccEEEcccccccccccccccEEEEEccccEEEEcccccccccccEEEEEccEEEEEEcEEEcccccccccccccccccccccEEEEEccccccccccccccccccEEEEEEEEEEcccEEEEEcccccEEEEEcEEEEccccccccccccccccccccccccEEEEcccEEcccccccccccccccccccccccccccccccHHccccccccccccccccc
cccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEEEcccEEEEEccccccccEEEEEccccccccccccEEEEEEccccEEEEEcccEEcccEEEEEccEEccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEccccEEEcccEEEcccccccccccccccccccccHHHHHHHHHccccccccccccc
LSKQTAARRGllnaesgqceatnpidncwrckeNWAENRQALAGCALgfgikatggkggkiyevtdpsdndmenpkvgtLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKktidgrganvhiANGAGFMLQFVQNVIIHGihihnisprsggmirdsvdhvgkrgqsdgdavsifgssniwldHLTLSQAHDGLIDAIQASTaitisnchfsnhdkAILLgasdtftedKKMQVTVAFNRFDkglvqrmpcvrfgFAHVVNNDYNQWEMYAigglkgptilsqgnrffasdnqntkevtkrmncspeegkswiwrsegdvflngayfnssgdpkkqIEYQmddvikpkpgtevERITKFAGalvckpgqkc
lskqtaarrgllnaesgqceatnpiDNCWRCKENWAENRQALAGCALGFGikatggkggkIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIhnisprsgGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFasdnqntkevtkrmncspeegkswIWRSEGDVFLNGAYFNSSGDPKKQIEYQMDDVIKPKPGTEVERITKFagalvckpgqkc
LSKQTAARRGLLNAESGQCEATNPIDNCWRCKENWAENRQALAGCALgfgikatggkggkIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQFVQNViihgihihniSPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNQNTKEVTKRMNCSPEEGKSWIWRSEGDVFLNGAYFNSSGDPKKQIEYQMDDVIKPKPGTEVERITKFAGALVCKPGQKC
*******************EATNPIDNCWRCKENWAENRQALAGCALGFGIKATGGKGGKIYEV************VGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPR****I***************DAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFF*********************KSWIWRSEGDVFLNGAYFN************************VERITKFAGALVC******
******A****LN**SGQCEATNPIDNCWRCKENWAENRQALAGCALGFGIKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNQNTKEVTKRMNCSPEEGKSWIWRSEGDVFLNGAYFNSSGDPKKQIEYQMDDVIKPKPGTEVERITKFAGALVCKPGQKC
**************ESGQCEATNPIDNCWRCKENWAENRQALAGCALGFGIKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNQN*************EGKSWIWRSEGDVFLNGAYFNSSGDPKKQIEYQMDDVIKPKPGTEVERITKFAGALVCKPGQKC
*************AESGQCEATNPIDNCWRCKENWAENRQALAGCALGFGIKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNQNTKEVTKRMNCSPEEGKSWIWRSEGDVFLNGAYFNSSG****************************************
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LSKQTAARRGLLNAESGQCEATNPIDNCWRCKENWAENRQALAGCALGFGIKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNQNTKEVTKRMNCSPEEGKSWIWRSEGDVFLNGAYFNSSGDPKKQIEYQMDDVIKPKPGTEVERITKFAGALVCKPGQKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query372 2.2.26 [Sep-21-2011]
Q9SRH4475 Probable pectate lyase 7 yes no 0.959 0.751 0.603 1e-133
Q9LFP5472 Probable pectate lyase 19 no no 0.978 0.771 0.605 1e-125
P40973434 Pectate lyase OS=Lilium l N/A no 0.983 0.843 0.602 1e-123
P15722449 Probable pectate lyase P5 N/A no 0.994 0.824 0.563 1e-123
Q9M9S2459 Probable pectate lyase 3 no no 0.956 0.775 0.583 1e-122
O64510455 Probable pectate lyase 6 no no 0.970 0.793 0.569 1e-120
Q944R1470 Probable pectate lyase 15 no no 0.948 0.751 0.573 1e-120
P40972397 Pectate lyase OS=Nicotian N/A no 0.981 0.919 0.570 1e-118
Q9FXD8408 Probable pectate lyase 5 no no 0.983 0.897 0.564 1e-116
P15721398 Probable pectate lyase P5 N/A no 0.986 0.922 0.555 1e-115
>sp|Q9SRH4|PLY7_ARATH Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1 Back     alignment and function desciption
 Score =  473 bits (1217), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 216/358 (60%), Positives = 272/358 (75%), Gaps = 1/358 (0%)

Query: 16  SGQCEATNPIDNCWRCKENWAENRQALAGCALGFGIKATGGKGGKIYEVTDPSDNDMENP 75
           +G C A+NPID CWRC+ +WA  R+ L  C  GFG + TGGK G+IY VT P D+DM NP
Sbjct: 118 TGPCTASNPIDKCWRCQPDWARRRKKLVHCVRGFGYRTTGGKRGRIYVVTSPRDDDMVNP 177

Query: 76  KVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQFVQ 135
           + GTLRHAVIQKEPLWI+F  DM+I+L QEL++   KTID RGANVHIA GAG  +Q+V 
Sbjct: 178 RPGTLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHIAYGAGITMQYVH 237

Query: 136 NVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGL 195
           N+IIHG+H+H+I   SGG+IRDS++H G RG++DGD +SIFG++NIWLDH+++S+  DGL
Sbjct: 238 NIIIHGLHVHHIVKSSGGLIRDSINHFGHRGEADGDGISIFGATNIWLDHISMSKCQDGL 297

Query: 196 IDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRF 255
           IDAI  STAITISN HF++H+  +LLGA +   +DKKMQVTVA+N F KGLVQRMP VR+
Sbjct: 298 IDAIMGSTAITISNSHFTHHNDVMLLGAQNNNMDDKKMQVTVAYNHFGKGLVQRMPRVRW 357

Query: 256 GFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDN-QNTKEVTKRMNCSPEEGKSWI 314
           GF HVVNNDY  WE+YAIGG +GPTILS GNRF A  + Q+ +EVTKR   S  E K+W 
Sbjct: 358 GFVHVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKQHYREVTKRDYASESEWKNWN 417

Query: 315 WRSEGDVFLNGAYFNSSGDPKKQIEYQMDDVIKPKPGTEVERITKFAGALVCKPGQKC 372
           WRSE DVF+N AYF  SG+P  +  +    +IKPK G  V ++TK+AGAL C+ G+ C
Sbjct: 418 WRSEKDVFMNNAYFRQSGNPHFKCSHSRQQMIKPKNGMAVSKLTKYAGALDCRVGKAC 475

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q9LFP5|PLY19_ARATH Probable pectate lyase 19 OS=Arabidopsis thaliana GN=At5g15110 PE=2 SV=1 Back     alignment and function description
>sp|P40973|PLY_LILLO Pectate lyase OS=Lilium longiflorum PE=2 SV=1 Back     alignment and function description
>sp|P15722|PLY59_SOLLC Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1 Back     alignment and function description
>sp|Q9M9S2|PLY3_ARATH Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1 Back     alignment and function description
>sp|O64510|PLY6_ARATH Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|P40972|PLY_TOBAC Pectate lyase OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|P15721|PLY56_SOLLC Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query372
296082858468 unnamed protein product [Vitis vinifera] 0.989 0.786 0.644 1e-139
359488970439 PREDICTED: pectate lyase-like [Vitis vin 0.989 0.838 0.644 1e-139
449516840439 PREDICTED: pectate lyase-like [Cucumis s 0.973 0.824 0.631 1e-133
449435358432 PREDICTED: probable pectate lyase P59-li 0.994 0.856 0.611 1e-131
449478689432 PREDICTED: LOW QUALITY PROTEIN: probable 0.994 0.856 0.611 1e-131
21536592 475 putative pectate lyase [Arabidopsis thal 0.959 0.751 0.603 1e-131
15232073 475 putative pectate lyase 7 [Arabidopsis th 0.959 0.751 0.603 1e-131
222424715365 AT3G01270 [Arabidopsis thaliana] 0.978 0.997 0.594 1e-131
224124024435 predicted protein [Populus trichocarpa] 0.965 0.825 0.631 1e-130
116831487 473 unknown [Arabidopsis thaliana] 0.978 0.769 0.602 1e-130
>gi|296082858|emb|CBI22159.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/368 (64%), Positives = 281/368 (76%)

Query: 5   TAARRGLLNAESGQCEATNPIDNCWRCKENWAENRQALAGCALGFGIKATGGKGGKIYEV 64
           T   R  L + +G C ATNPID CWRCK++WA+NR+ LA C LGFG + TGGK G+ Y V
Sbjct: 101 TNTTRRNLRSNNGPCMATNPIDRCWRCKQDWAKNRKKLADCVLGFGRRTTGGKDGEFYVV 160

Query: 65  TDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIA 124
           TD SDNDM +PK GTLRHAVIQKEPLWIIFA+DM I+L+QELI+ G KTIDGRGANVHIA
Sbjct: 161 TDASDNDMIDPKPGTLRHAVIQKEPLWIIFARDMIIRLKQELIMAGNKTIDGRGANVHIA 220

Query: 125 NGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLD 184
            G G  +QFV+N+IIH +HIH+I P  GGMIRDSVDH G R  SDGD VSIFGSSN+W+D
Sbjct: 221 YGCGITIQFVKNIIIHNLHIHDIVPAQGGMIRDSVDHYGLRTASDGDGVSIFGSSNVWVD 280

Query: 185 HLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDK 244
           HL++S   DGL+D I ASTAITISNCHF+NH++ +L G S+ F  DK MQVTVAFN + +
Sbjct: 281 HLSMSNCKDGLVDVIMASTAITISNCHFTNHNEVMLFGGSNNFQGDKIMQVTVAFNHYGR 340

Query: 245 GLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNQNTKEVTKRMN 304
           GLVQRMP  R+GF HVVNNDY  W MYAIGG + PTI+SQGNRF A  N   KEVTKR  
Sbjct: 341 GLVQRMPRCRYGFVHVVNNDYTHWLMYAIGGSQNPTIISQGNRFIAPPNMACKEVTKRDY 400

Query: 305 CSPEEGKSWIWRSEGDVFLNGAYFNSSGDPKKQIEYQMDDVIKPKPGTEVERITKFAGAL 364
            SP+E KSW W S+GD+  NGA+F  SGDPKK+  +   D+IK KPGT V R+T+F+G+L
Sbjct: 401 ASPDEWKSWTWISQGDLLQNGAFFVQSGDPKKKHPFTRYDMIKAKPGTFVNRLTRFSGSL 460

Query: 365 VCKPGQKC 372
            CK  Q C
Sbjct: 461 GCKVNQPC 468

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359488970|ref|XP_002282500.2| PREDICTED: pectate lyase-like [Vitis vinifera] gi|147866287|emb|CAN79927.1| hypothetical protein VITISV_042447 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449516840|ref|XP_004165454.1| PREDICTED: pectate lyase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449435358|ref|XP_004135462.1| PREDICTED: probable pectate lyase P59-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449478689|ref|XP_004155392.1| PREDICTED: LOW QUALITY PROTEIN: probable pectate lyase P59-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|21536592|gb|AAM60924.1| putative pectate lyase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15232073|ref|NP_186776.1| putative pectate lyase 7 [Arabidopsis thaliana] gi|32129851|sp|Q9SRH4.1|PEL7_ARATH RecName: Full=Probable pectate lyase 7; Flags: Precursor gi|6094557|gb|AAF03499.1|AC010676_9 putative pectate lyase [Arabidopsis thaliana] gi|6714461|gb|AAF26147.1|AC008261_4 putative pectate lyase [Arabidopsis thaliana] gi|115311475|gb|ABI93918.1| At3g01270 [Arabidopsis thaliana] gi|332640110|gb|AEE73631.1| putative pectate lyase 7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222424715|dbj|BAH20311.1| AT3G01270 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224124024|ref|XP_002330086.1| predicted protein [Populus trichocarpa] gi|222871220|gb|EEF08351.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|116831487|gb|ABK28696.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query372
TAIR|locus:2100247475 AT3G01270 [Arabidopsis thalian 0.978 0.766 0.553 7.8e-110
TAIR|locus:2012562459 AT59 [Arabidopsis thaliana (ta 0.983 0.797 0.539 2.3e-103
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.991 0.785 0.521 9.1e-100
TAIR|locus:2058842455 AT2G02720 [Arabidopsis thalian 0.951 0.778 0.537 9.1e-100
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.983 0.897 0.532 1.3e-98
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.975 0.881 0.512 2.5e-97
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.951 0.819 0.515 5.2e-97
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.948 0.848 0.519 4.7e-96
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.948 0.819 0.522 5.9e-96
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.948 0.846 0.522 1.6e-95
TAIR|locus:2100247 AT3G01270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 202/365 (55%), Positives = 255/365 (69%)

Query:     9 RGLLNAESGQCEATNPIDNCWRCKENWAENRQALAGCALXXXXXXXXXXXXXIYEVTDPS 68
             +G  +  +G C A+NPID CWRC+ +WA  R+ L  C               IY VT P 
Sbjct:   111 KGKWSKLTGPCTASNPIDKCWRCQPDWARRRKKLVHCVRGFGYRTTGGKRGRIYVVTSPR 170

Query:    69 DNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAG 128
             D+DM NP+ GTLRHAVIQKEPLWI+F  DM+I+L QEL++   KTID RGANVHIA GAG
Sbjct:   171 DDDMVNPRPGTLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHIAYGAG 230

Query:   129 FMLQFVQNVXXXXXXXXXXSPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTL 188
               +Q+V N+             SGG+IRDS++H G RG++DGD +SIFG++NIWLDH+++
Sbjct:   231 ITMQYVHNIIIHGLHVHHIVKSSGGLIRDSINHFGHRGEADGDGISIFGATNIWLDHISM 290

Query:   189 SQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQ 248
             S+  DGLIDAI  STAITISN HF++H+  +LLGA +   +DKKMQVTVA+N F KGLVQ
Sbjct:   291 SKCQDGLIDAIMGSTAITISNSHFTHHNDVMLLGAQNNNMDDKKMQVTVAYNHFGKGLVQ 350

Query:   249 RMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDN-QNTKEVTKRMNCSP 307
             RMP VR+GF HVVNNDY  WE+YAIGG +GPTILS GNRF A  + Q+ +EVTKR   S 
Sbjct:   351 RMPRVRWGFVHVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKQHYREVTKRDYASE 410

Query:   308 EEGKSWIWRSEGDVFLNGAYFNSSGDPKKQIEYQMDDVIKPKPGTEVERITKFAGALVCK 367
              E K+W WRSE DVF+N AYF  SG+P  +  +    +IKPK G  V ++TK+AGAL C+
Sbjct:   411 SEWKNWNWRSEKDVFMNNAYFRQSGNPHFKCSHSRQQMIKPKNGMAVSKLTKYAGALDCR 470

Query:   368 PGQKC 372
              G+ C
Sbjct:   471 VGKAC 475
GO:0005886 "plasma membrane" evidence=ISM
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=IEA;ISS
TAIR|locus:2012562 AT59 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058842 AT2G02720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P40972PLY_TOBAC4, ., 2, ., 2, ., 20.57060.98110.9193N/Ano
P40973PLY_LILLO4, ., 2, ., 2, ., 20.60210.98380.8433N/Ano
P15722PLY59_SOLLC4, ., 2, ., 2, ., 20.56300.99460.8240N/Ano
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.56670.97580.9052N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.54360.95160.8762N/Ano
P27761MPA13_AMBARNo assigned EC number0.50560.94890.8891N/Ano
P27762MPAA2_AMBARNo assigned EC number0.51410.94890.8891N/Ano
P27760MPA12_AMBARNo assigned EC number0.51690.94890.8869N/Ano
P28744MPA14_AMBARNo assigned EC number0.51120.93010.8826N/Ano
P15721PLY56_SOLLC4, ., 2, ., 2, ., 20.55550.98650.9221N/Ano
Q9SRH4PLY7_ARATH4, ., 2, ., 2, ., 20.60330.95960.7515yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.963
4th Layer4.2.2.20.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020887001
SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_21, whole genome shotgun sequence); (439 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query372
smart00656190 smart00656, Amb_all, Amb_all domain 2e-75
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 2e-69
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 1e-35
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  231 bits (591), Expect = 2e-75
 Identities = 97/207 (46%), Positives = 120/207 (57%), Gaps = 28/207 (13%)

Query: 97  DMNIKLQQ--ELIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGM 154
           D+ I L     +I+   KTIDGRG+ V I  G G  ++ V NVII  + IH+  P  G  
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKGG-GLTIKSVSNVIIRNLTIHDPKPVYG-- 57

Query: 155 IRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLS---------QAHDGLIDAIQASTAI 205
                        SDGDA+SI GSSN+W+DH++LS           +DGLID    ST +
Sbjct: 58  -------------SDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 206 TISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDY 265
           TISN +F NH K +LLG SD+ T+D KM+VT+A N F   L QR P VRFG+ HV NN Y
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGN-LRQRAPRVRFGYVHVYNNYY 163

Query: 266 NQWEMYAIGGLKGPTILSQGNRFFASD 292
             W  YAIGG  G TILS+GN F A  
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 372
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.98
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.47
PLN02218431 polygalacturonase ADPG 98.32
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.2
PLN02188404 polygalacturonase/glycoside hydrolase family prote 98.2
PLN02155394 polygalacturonase 98.18
PLN03003456 Probable polygalacturonase At3g15720 98.1
PLN02793443 Probable polygalacturonase 98.08
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.98
PLN03010409 polygalacturonase 97.91
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.81
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.77
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.74
PLN02218431 polygalacturonase ADPG 97.66
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.62
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.51
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.47
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.39
PLN03003456 Probable polygalacturonase At3g15720 97.3
PLN02155394 polygalacturonase 97.3
PLN03010409 polygalacturonase 97.17
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.17
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.14
PLN02793443 Probable polygalacturonase 97.09
PLN02480343 Probable pectinesterase 96.97
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.88
PLN02197588 pectinesterase 96.88
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.73
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 96.59
smart00656190 Amb_all Amb_all domain. 96.51
PLN02176340 putative pectinesterase 96.14
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 95.76
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.73
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 95.66
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.54
PLN02682369 pectinesterase family protein 95.51
PLN02432293 putative pectinesterase 95.5
PLN02304379 probable pectinesterase 95.35
PLN02301548 pectinesterase/pectinesterase inhibitor 95.16
PLN02773317 pectinesterase 95.11
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.01
PLN02634359 probable pectinesterase 94.99
PLN02665366 pectinesterase family protein 94.96
PLN02314586 pectinesterase 94.91
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 94.74
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 94.71
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.67
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.5
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.28
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.21
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 94.13
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.08
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.86
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.84
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.81
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.79
PLN02217670 probable pectinesterase/pectinesterase inhibitor 93.68
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 93.62
PLN02497331 probable pectinesterase 93.6
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 93.48
PLN02916502 pectinesterase family protein 93.4
PLN02671359 pectinesterase 93.27
PRK10531422 acyl-CoA thioesterase; Provisional 91.53
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 91.14
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 91.03
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 90.79
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 87.79
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.1e-58  Score=436.41  Aligned_cols=279  Identities=32%  Similarity=0.450  Sum_probs=222.2

Q ss_pred             cCcccccC-------CCcCCCCCeEEEEcCCCCCCCCCCCCcchHHHhhcCCCeEEEEeeceEEEeC------ceEEecc
Q 044170           44 GCALGFGI-------KATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQ------QELIVQG  110 (372)
Q Consensus        44 ~~a~GfG~-------~ttGG~gG~v~~VT~~~d~~~~~~~pGsLr~av~~~~P~~IvF~~sg~I~l~------~~l~I~s  110 (372)
                      ...+|||.       +||||.||++++|++.+|          |...++..+|.+++.-+.|+|.+.      ..|.+.|
T Consensus        32 ~~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~s  101 (345)
T COG3866          32 NSFAGFASNPAGSKTGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGS  101 (345)
T ss_pred             ccccccccccCCCCCCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeecc
Confidence            34778884       789999999999999988          677899999995555666999887      4577889


Q ss_pred             CceEeecCCccEEecCCcEEEeccccEEEEceEEeeecCCCCCceecCCCCcCCCCCCCCCeEEe-eCCCcEEEEeeeee
Q 044170          111 KKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSI-FGSSNIWLDHLTLS  189 (372)
Q Consensus       111 nkTI~G~ga~~~I~~G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~~~~~~~~~~~~DaI~i-~~s~nVwIDHcs~s  189 (372)
                      ||||.|.+++++|. |.||.|+.+.|||||||+|++...+                ....|+|+| .+++|||||||+|+
T Consensus       102 NkTivG~g~~a~~~-g~gl~i~~a~NVIirNltf~~~~~~----------------d~~~D~Isi~~~~~nIWIDH~tf~  164 (345)
T COG3866         102 NKTIVGSGADATLV-GGGLKIRDAGNVIIRNLTFEGFYQG----------------DPNYDAISIYDDGHNIWIDHNTFS  164 (345)
T ss_pred             ccEEEeeccccEEE-eceEEEEeCCcEEEEeeEEEeeccC----------------CCCCCcEEeccCCeEEEEEeeEec
Confidence            99999999999999 9999999999999999999976311                123699999 68999999999999


Q ss_pred             c--------CccCccccccCCccEEEeCcEeccCCceeEecCCCCc-cCCCceeEEEEeeEEcCCCCCcCcceeeeEEEE
Q 044170          190 Q--------AHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHV  260 (372)
Q Consensus       190 ~--------~~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~~~R~PrvR~G~~hv  260 (372)
                      .        ..||++|+++++++||||||+|++|+|.+|+|.+|+. ..|+..+||+|||||. |+.||+||+|||.+||
T Consensus       165 ~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFk-n~~qR~PriRfG~vHv  243 (345)
T COG3866         165 GGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFK-NLYQRGPRIRFGMVHV  243 (345)
T ss_pred             cccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccc-cccccCCceEeeEEEE
Confidence            8        7899999999999999999999999999999999985 4568899999999997 8999999999999999


Q ss_pred             eceeeecccceEeecCCC--ceEEEeccEEecCCCCCccceeeeccCCCCCcccceEecCCceEeecceEecCCCCCCC-
Q 044170          261 VNNDYNQWEMYAIGGLKG--PTILSQGNRFFASDNQNTKEVTKRMNCSPEEGKSWIWRSEGDVFLNGAYFNSSGDPKKQ-  337 (372)
Q Consensus       261 ~NN~~~~~~~yaig~~~~--~~i~~egNyF~~~~~~~~~~vt~r~~~~~~~~~~~~~~s~gd~~~nG~~~~~sG~~~~~-  337 (372)
                      +||||.....|++...++  ++|++|+|||+....+..---+++.        +++|..+     .|++|..++....+ 
T Consensus       244 yNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--------~GY~~~d-----~gsy~~~s~~~~~~~  310 (345)
T COG3866         244 YNNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGFLDTKGT--------SGYANQD-----SGSYLNSSKSMSVRA  310 (345)
T ss_pred             eccccccCcccceEEeeccceEEEEecceeccCCCCceeeecCCc--------cceEEec-----cCceecccCCccccc
Confidence            999999765454444445  9999999999997554211111111        1444432     34555544443222 


Q ss_pred             --CCCC--CCCccccCCcchHH-HHhccccc
Q 044170          338 --IEYQ--MDDVIKPKPGTEVE-RITKFAGA  363 (372)
Q Consensus       338 --~~y~--~~~~~~~~p~~~v~-~~t~~aG~  363 (372)
                        +.++  ...++++.|.+.|+ .+|++||+
T Consensus       311 ~G~~w~ps~~Y~Ytvd~~~dVks~Vt~yAGa  341 (345)
T COG3866         311 GGVTWNPSSYYSYTVDPPEDVKSFVTNYAGA  341 (345)
T ss_pred             CCccCCCCCCcccccCChHHhhhhhhccccc
Confidence              2233  33446889999996 67799995

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query372
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 9e-79
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 6e-17
3zsc_A340 Catalytic Function And Substrate Recognition Of The 8e-17
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 4e-15
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 1e-14
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 1e-14
3krg_A399 Structural Insights Into Substrate Specificity And 1e-14
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 2e-14
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 6e-13
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 8e-13
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 2e-09
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 2e-09
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 3e-09
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 2e-08
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 8e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  290 bits (742), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 153/346 (44%), Positives = 200/346 (57%), Gaps = 4/346 (1%)
Query: 23  NPIDNCWRCKENWAENRQALAGCALXXXXXXXXXXXXXIYEVTDPSDNDMENPKVGTLRH 82
           NPID+CWR   NW +NR  LA CA+              Y VT   DN + NP  GTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPV-NPTPGTLRY 60
Query: 83  AVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAG--FMLQFVQNVXXX 140
              +++ LWIIF+++MNIKL+  L V G KTIDGRGA+VH+ NG    FM +    +   
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 141 XXXXXXXSPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQ 200
                  +   G ++      V      DGDA+++   +N W+DH +LS   DGLID   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180
Query: 201 ASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHV 260
            ST ITISN HF NH K +LLG  DT+ +DK M+VTVAFN+F     QRMP  R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240
Query: 261 VNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNQNTKEVTKRMNC-SPEEGKSWIWRSEG 319
            NN+Y+ W +YAIGG   PTILS+GN F A      KEVTKR+ C SP    +W+WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300
Query: 320 DVFLNGAYFNSSGDPKKQIEYQMDDVIKPKPGTEVERITKFAGALV 365
           D F+NGAYF SSG  ++   Y  ++  K + G    ++TK AG + 
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVVT 346
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query372
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-136
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 6e-91
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 1e-78
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 9e-78
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 6e-76
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 3e-68
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 1e-67
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 6e-66
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 3e-64
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 1e-63
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 2e-55
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 5e-06
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 8e-06
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 5e-05
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 6e-05
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 6e-05
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 8e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  390 bits (1002), Expect = e-136
 Identities = 163/345 (47%), Positives = 212/345 (61%), Gaps = 4/345 (1%)

Query: 23  NPIDNCWRCKENWAENRQALAGCALGFGIKATGGKGGKIYEVTDPSDNDMENPKVGTLRH 82
           NPID+CWR   NW +NR  LA CA+GFG    GGKGG  Y VT   D +  NP  GTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 83  AVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIA-NGAGFMLQFVQNVIIHG 141
              +++ LWIIF+++MNIKL+  L V G KTIDGRGA+VH+   G    ++ V +VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 142 IHIHNISPRSGGMIRDS-VDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQ 200
           +HIH  +    G +  S    V      DGDA+++   +N W+DH +LS   DGLID   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 201 ASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHV 260
            ST ITISN HF NH K +LLG  DT+ +DK M+VTVAFN+F     QRMP  R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 261 VNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNQNTKEVTKRMNCSPE-EGKSWIWRSEG 319
            NN+Y+ W +YAIGG   PTILS+GN F A      KEVTKR+ C       +W+WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 320 DVFLNGAYFNSSGDPKKQIEYQMDDVIKPKPGTEVERITKFAGAL 364
           D F+NGAYF SSG  ++   Y  ++  K + G    ++TK AG +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query372
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.49
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.46
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.43
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.42
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.35
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.33
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.33
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.31
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.3
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.28
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.25
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 98.23
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.22
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 98.19
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.18
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.18
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.06
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.05
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.97
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.96
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.83
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.83
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.8
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.76
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.61
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.57
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.56
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.53
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.51
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.45
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.38
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.37
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.36
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.32
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.21
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.14
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.09
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.07
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 97.05
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.91
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.81
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.71
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.69
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.67
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.66
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.39
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.39
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.36
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.25
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.09
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.09
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 95.6
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.98
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 94.67
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 94.56
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 86.92
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 84.95
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=4.5e-101  Score=761.64  Aligned_cols=343  Identities=48%  Similarity=0.850  Sum_probs=324.5

Q ss_pred             CCcccceeccCcchhhhhhccccCcccccCCCcCCCCCeEEEEcCCCCCCCCCCCCcchHHHhhcCCCeEEEEeeceEEE
Q 044170           22 TNPIDNCWRCKENWAENRQALAGCALGFGIKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIK  101 (372)
Q Consensus        22 ~n~id~cwr~~~~w~~~r~~la~~a~GfG~~ttGG~gG~v~~VT~~~d~~~~~~~pGsLr~av~~~~P~~IvF~~sg~I~  101 (372)
                      +||||+||||+|+|+.+||+||+||||||++||||+||++|+||+++| ++++|+|||||+||++++||||+|+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999977 5789999999999999999999999999999


Q ss_pred             eCceEEeccCceEeecCCccEEec-CCcEEEeccccEEEEceEEeeecCCCCCce-ecCCCCcCCCCCCCCCeEEeeCCC
Q 044170          102 LQQELIVQGKKTIDGRGANVHIAN-GAGFMLQFVQNVIIHGIHIHNISPRSGGMI-RDSVDHVGKRGQSDGDAVSIFGSS  179 (372)
Q Consensus       102 l~~~l~I~snkTI~G~ga~~~I~~-G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i-~~~~~~~~~~~~~~~DaI~i~~s~  179 (372)
                      |+++|.|.|||||+|||++++|.+ |.||+|++++|||||||+|+++.|..++.| ++++++++.+..+++|+|+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999994 479999999999999999999988776666 888888888888999999999999


Q ss_pred             cEEEEeeeeecCccCccccccCCccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCcceeeeEEE
Q 044170          180 NIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAH  259 (372)
Q Consensus       180 nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~PrvR~G~~h  259 (372)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+...|..++||||||+|..++.+|+||+|+|.+|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999998877788999999999933899999999999999


Q ss_pred             EeceeeecccceEeecCCCceEEEeccEEecCCCCCccceeeeccCC-CCCcccceEecCCceEeecceEecCCCCCCCC
Q 044170          260 VVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNQNTKEVTKRMNCS-PEEGKSWIWRSEGDVFLNGAYFNSSGDPKKQI  338 (372)
Q Consensus       260 v~NN~~~~~~~yaig~~~~~~i~~egNyF~~~~~~~~~~vt~r~~~~-~~~~~~~~~~s~gd~~~nG~~~~~sG~~~~~~  338 (372)
                      |+||||++|.+|++++++++++++|+|||++++++..|++++|++.+ +.+|++|+|++++|+|+||++|.++|.....+
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~  319 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCC
Confidence            99999999999999999999999999999999998889999998876 67899999999999999999999999876654


Q ss_pred             CCCCCCccccCCcchHHHHhccccccC
Q 044170          339 EYQMDDVIKPKPGTEVERITKFAGALV  365 (372)
Q Consensus       339 ~y~~~~~~~~~p~~~v~~~t~~aG~~~  365 (372)
                      +|+++++++++|+++|++||++||||.
T Consensus       320 ~y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             CCCcccccccCCHHHHHHHhhhccCCC
Confidence            699999999999999999999999984
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 372
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-137
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-75
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 7e-62
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 1e-60
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 4e-52
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-36
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 8e-05
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  392 bits (1009), Expect = e-137
 Identities = 166/345 (48%), Positives = 215/345 (62%), Gaps = 4/345 (1%)

Query: 23  NPIDNCWRCKENWAENRQALAGCALGFGIKATGGKGGKIYEVTDPSDNDMENPKVGTLRH 82
           NPID+CWR   NW +NR  LA CA+GFG    GGKGG  Y VT   D +  NP  GTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 83  AVIQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIAN-GAGFMLQFVQNVIIHG 141
              +++ LWIIF+++MNIKL+  L V G KTIDGRGA+VH+ N G    ++ V +VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 142 IHIHNISPRSGGMIRDS-VDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQ 200
           +HIH  +    G +  S    V      DGDA+++   +N W+DH +LS   DGLID   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 201 ASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHV 260
            ST ITISN HF NH K +LLG  DT+ +DK M+VTVAFN+F     QRMP  R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 261 VNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNQNTKEVTKRMNC-SPEEGKSWIWRSEG 319
            NN+Y+ W +YAIGG   PTILS+GN F A      KEVTKR+ C SP    +W+WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 320 DVFLNGAYFNSSGDPKKQIEYQMDDVIKPKPGTEVERITKFAGAL 364
           D F+NGAYF SSG  ++   Y  ++  K + G    ++TK AG +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query372
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.35
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.22
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 98.19
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.19
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 98.17
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.99
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.97
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.95
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.83
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.83
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.16
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.13
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.98
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.98
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.97
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.96
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.41
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.39
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.25
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.09
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.82
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.79
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 95.67
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.6
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.1
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.87
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.33
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.14
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=4.2e-96  Score=724.06  Aligned_cols=343  Identities=48%  Similarity=0.835  Sum_probs=311.9

Q ss_pred             CCcccceeccCcchhhhhhccccCcccccCCCcCCCCCeEEEEcCCCCCCCCCCCCcchHHHhhcCCCeEEEEeeceEEE
Q 044170           22 TNPIDNCWRCKENWAENRQALAGCALGFGIKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIK  101 (372)
Q Consensus        22 ~n~id~cwr~~~~w~~~r~~la~~a~GfG~~ttGG~gG~v~~VT~~~d~~~~~~~pGsLr~av~~~~P~~IvF~~sg~I~  101 (372)
                      .||||+||||+|||+++||+||+||||||++||||+||+||+||+|+| ++.+|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            499999999999999999999999999999999999999999999987 4788999999999999999999999999999


Q ss_pred             eCceEEeccCceEeecCCccEEec-CCcEEEeccccEEEEceEEeeecCCCCCceecCC-CCcCCCCCCCCCeEEeeCCC
Q 044170          102 LQQELIVQGKKTIDGRGANVHIAN-GAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSV-DHVGKRGQSDGDAVSIFGSS  179 (372)
Q Consensus       102 l~~~l~I~snkTI~G~ga~~~I~~-G~gi~i~~a~NVIIRnl~i~~~~~~~~g~i~~~~-~~~~~~~~~~~DaI~i~~s~  179 (372)
                      |+++|.|+|||||+|||++++|.. |.+|.+..++|||||||+||++.+...+.+...+ .+.+....+++|+|+|++++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            999999999999999999999983 4458888999999999999998776555443322 23333456789999999999


Q ss_pred             cEEEEeeeeecCccCccccccCCccEEEeCcEeccCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCcceeeeEEE
Q 044170          180 NIWLDHLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAH  259 (372)
Q Consensus       180 nVwIDHcs~s~~~Dg~idv~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~PrvR~G~~h  259 (372)
                      |||||||+|+|+.||+||+++++++||||||+|++|.|++|+|+++....++.++||||||+|.++..+|+|++|+|.+|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999987777788999999999986677888999999999


Q ss_pred             EeceeeecccceEeecCCCceEEEeccEEecCCCCCccceeeecc-CCCCCcccceEecCCceEeecceEecCCCCCCCC
Q 044170          260 VVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNQNTKEVTKRMN-CSPEEGKSWIWRSEGDVFLNGAYFNSSGDPKKQI  338 (372)
Q Consensus       260 v~NN~~~~~~~yaig~~~~~~i~~egNyF~~~~~~~~~~vt~r~~-~~~~~~~~~~~~s~gd~~~nG~~~~~sG~~~~~~  338 (372)
                      |+||||++|..|++++++++++++|+|||++++.+..++++++.. .....+++|.|++++|+++||++|.++|.....+
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~  319 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccc
Confidence            999999999999999999999999999999999998888888865 3344688999999999999999999999876665


Q ss_pred             CCCCCCccccCCcchHHHHhccccccC
Q 044170          339 EYQMDDVIKPKPGTEVERITKFAGALV  365 (372)
Q Consensus       339 ~y~~~~~~~~~p~~~v~~~t~~aG~~~  365 (372)
                      .|.++.++++.|++.|++|+++||||+
T Consensus       320 ~~~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cccCccccccCCHHHHHhhhccCCCCC
Confidence            788899999999999999999999995
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure