Citrus Sinensis ID: 044211

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MMMNGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRPMVDVAKKTQANVCSGA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccccccEEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHHcccccccccEEcEEccccEEEEEEEEcccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHccccccccccEEcHHHHHHHHccccHHccccccccccEEccEcccccEEEEEEccccccccHHHHHHHHHHHHHHHcccHHEEEEEEEccccEEEEEEEcccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHccEEEcccccccHcHcccEEEccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccHHHHccHcHcccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MMMNGAKVLEKLISsskgkynpiRSFCAEELKTTHNAIKNGYKLYEGffqnrpisgffqerpvsvmkfdeskprtydccinnIVYASQMIHRCIFKLIGCCLETQIPILVFEYINcgsladririhhtpqpqhepllLTHRLKIAMDIANAIAYLhvgfprpvifrdfklsnilfneenvaklfdfsfsisipegETHISELLSGLRAFDLARLNEDDGYVVLLDHIKKYFeedrlneiidplimgdrscsgnQQQLQAFAHLIFECvnespvdrpmvdvakktqanvcsga
Flexible Loop (DISEMBL)
MMMNGAKVLEKLissskgkynPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMkfdeskprtyDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRPMVDVAKKTQANVCSGA
Low Complexity Region (SEG)
MMMNGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRPMVDVAKKTQANVCSGA
Disordered region (IsUnstruct)
*******************YNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNE**********************
Disordered Region (DISOPRED)
***NGAK*****************SFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESP**RPMVDVAKKTQANV****
Disordered Region (DISEMBL)
********LEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRPMVDVAKKTQANVCSGA
Disordered Region (DISPRO)
*****AKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMMNGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRPMVDVAKKTQANVCSGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	292	2.2.26 [Sep-21-2011]
Q9M092	786	Wall-associated receptor	no	no	0.886	0.329	0.304	1e-28
O64798	389	Inactive serine/threonine	no	no	0.904	0.678	0.323	2e-28
Q9LMN6	738	Wall-associated receptor	no	no	0.928	0.367	0.304	6e-28
Q9LMN7	733	Wall-associated receptor	no	no	0.928	0.369	0.304	9e-28
Q0WNY5	793	Wall-associated receptor	no	no	0.886	0.326	0.307	3e-27
Q9LSV3	433	Putative wall-associated	no	no	0.914	0.616	0.297	4e-27
Q9LMN8	741	Wall-associated receptor	no	no	0.938	0.369	0.303	2e-26
O80795	372	Probable inactive recepto	no	no	0.609	0.478	0.357	3e-26
Q9LMT9	764	Putative wall-associated	no	no	0.941	0.359	0.281	1e-25
Q39191	735	Wall-associated receptor	no	no	0.928	0.368	0.297	1e-25

>sp|Q9M092|WAKLM_ARATH Wall-associated receptor kinase-like 17 OS=Arabidopsis thaliana GN=WAKL17 PE=3 SV=2

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 155/312 (49%), Gaps = 53/312 (16%)

Query: 4   NGAKVLEKLISSSKGKYNPIRSFCAEEL-KTTHNAIKN---GYKLYEGFFQNRPISGFFQ 59
           NG  +L++ +++ +G     R F ++EL K T N  +N   G+      ++   + G   
Sbjct: 410 NGGLLLQQELNTRQGVVEKARIFTSKELEKATENFSENRVLGHGGQGTVYKGMLVDG--- 466

Query: 60  ERPVSVMK---FDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC 116
            R V+V K    DE K + +   IN +V  SQ+ HR + KL+GCCLET++PILV+E+I  
Sbjct: 467 -RTVAVKKSKVIDEDKLQEF---INEVVILSQINHRHVVKLLGCCLETEVPILVYEFIIN 522

Query: 117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN 176
           G+L   I   H  +     ++   RL+IA+DIA A++YLH     P+  RD K +NIL +
Sbjct: 523 GNLFKHI---HEEEADDYTMIWGMRLRIAVDIAGALSYLHSAASSPIYHRDIKSTNILLD 579

Query: 177 EENVAKLFDFSFSISIPEGETHISELLSGLRAFD----------------------LARL 214
           E+  AK+ DF  S S+   +TH + ++SG   +                       LA L
Sbjct: 580 EKYRAKVADFGTSRSVTIDQTHWTTVISGTVGYVDPEYYRSSQYTEKSDVYSFGVILAEL 639

Query: 215 NEDDGYVVLL----------DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLI 264
              D  V+++          +H +   +E RL++I+D  I  D       +Q+ A A+L 
Sbjct: 640 ITGDKPVIMVQNTQEIIALAEHFRVAMKERRLSDIMDARIRDD----SKPEQVMAVANLA 695

Query: 265 FECVNESPVDRP 276
            +C++    +RP
Sbjct: 696 MKCLSSRGRNRP 707

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|O64798|Y1747_ARATH Inactive serine/threonine-protein kinase At1g67470 OS=Arabidopsis thaliana GN=At1g67470 PE=2 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 155/318 (48%), Gaps = 54/318 (16%)

Query: 5   GAKVLEKLISSSKGKYNPIRSFCAEELKTTHN--AIKNGYKLYEGFFQNRPISGFFQERP 62
           GAK+L+ LI    GK NPI+ F A+E++   N   + N        F  +  SG  +   
Sbjct: 19  GAKLLKDLIECCDGKSNPIKFFSADEIRKATNNFGVSNLVSELSHDFDYKWYSGKNENHD 78

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMI--HRCIFKLIGCCLETQIPILVFEYINCGSLA 120
           + +++   S+   Y       +  S M+  H+   KLIG CLE + P++V+         
Sbjct: 79  MILVRKAFSQSVYYKDTFFRDIAVSSMVSGHKNFLKLIGYCLEFEEPVMVYH-------- 130

Query: 121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV 180
             ++ H+  +   +P     R+KIA DIA A+AYLH  FPRP ++R   L+NIL +E+ V
Sbjct: 131 -GVKKHYHLESSEQPW--KRRMKIAEDIATALAYLHTAFPRPFVYRCLSLTNILLDEDGV 187

Query: 181 AKLFDFSFSISIPEGETHIS-ELLSGLRAFDLARLN---------EDDGYVV-------- 222
           AKL DFSF +SIPEGET +  + ++G    D  + N         E D + V        
Sbjct: 188 AKLMDFSFCVSIPEGETFVQVDYIAG--TVDYLKPNYLKHGVVSEETDVFAVGHSMQMLL 245

Query: 223 ----LLDHI-------KKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFEC---V 268
               + D I        K+ EE +++EI DP  MG+ S      Q++AF  L   C   V
Sbjct: 246 MGEKIFDRIMRRPFPTSKFMEEPKMDEIADPE-MGEIS-EEELCQMKAFLLLSLRCTGHV 303

Query: 269 NESPVDRPMVDVAKKTQA 286
            E P    MV+VAK+ ++
Sbjct: 304 GEVPT---MVEVAKELKS 318

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMN6|WAK4_ARATH Wall-associated receptor kinase 4 OS=Arabidopsis thaliana GN=WAK4 PE=2 SV=1

 Score =  124 bits (312), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 155/319 (48%), Gaps = 48/319 (15%)

Query: 4   NGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPV 63
           NG  +L + +S +      ++ F  E +K   +       L +G  Q     G   +  +
Sbjct: 376 NGGGMLMQRLSGAGPSNVDVKIFTEEGMKEATDGYDENRILGQGG-QGTVYKGILPDNSI 434

Query: 64  SVMK----FDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSL 119
             +K     D S+   +   IN ++  SQ+ HR + KL+GCCLET++P+LV+E+I+ G+L
Sbjct: 435 VAIKKARLGDNSQVEQF---INEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFISSGTL 491

Query: 120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
            D    H         L   HRL++A++IA  +AYLH     P+I RD K +NIL +E  
Sbjct: 492 FD----HLHGSMFDSSLTWEHRLRMAVEIAGTLAYLHSSASIPIIHRDIKTANILLDENL 547

Query: 180 VAKLFDFSFSISIPEGETHISELLSGLRA------FDLARLNE-DDGY---VVLLD---- 225
            AK+ DF  S  IP  +  ++ ++ G         ++   LNE  D Y   VVL++    
Sbjct: 548 TAKVADFGASRLIPMDKEDLATMVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSG 607

Query: 226 -------------HIKKYF----EEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECV 268
                        HI  YF    +E+RL+EIID  +M +     NQ+++Q  A +  EC 
Sbjct: 608 QKALCFERPQTSKHIVSYFASATKENRLHEIIDGQVMNEN----NQREIQKAARIAVECT 663

Query: 269 NESPVDRP-MVDVAKKTQA 286
             +  +RP M +VA + +A
Sbjct: 664 RLTGEERPGMKEVAAELEA 682

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1

 Score =  124 bits (311), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 155/319 (48%), Gaps = 48/319 (15%)

Query: 4   NGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPV 63
           NG  +L + +S +      ++ F  E +K   +       L +G  Q     G  Q+  +
Sbjct: 374 NGGGMLIQRLSGAGPSNVDVKIFTEEGMKEATDGYNESRILGQGG-QGTVYKGILQDNSI 432

Query: 64  SVMK----FDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSL 119
             +K     D S+   +   IN ++  SQ+ HR + KL+GCCLET++P+LV+E+I+ G+L
Sbjct: 433 VAIKKARLGDRSQVEQF---INEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFISSGTL 489

Query: 120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
            D    H         L   HRL+IA+++A  +AYLH     P+I RD K +NIL +E  
Sbjct: 490 FD----HLHGSMFDSSLTWEHRLRIAIEVAGTLAYLHSYASIPIIHRDVKTANILLDENL 545

Query: 180 VAKLFDFSFSISIPEGETHISELLSGLRA------FDLARLNE-DDGY---VVLLD---- 225
            AK+ DF  S  IP  +  ++ ++ G         ++   LNE  D Y   VVL++    
Sbjct: 546 TAKVADFGASRLIPMDQEQLTTMVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSG 605

Query: 226 -------------HIKKYF----EEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECV 268
                        H+  YF    +E+RL+EIID  +M +     NQ+++Q  A +  EC 
Sbjct: 606 EKALCFERPQSSKHLVSYFVSAMKENRLHEIIDGQVMNEY----NQREIQESARIAVECT 661

Query: 269 NESPVDRP-MVDVAKKTQA 286
                +RP M +VA + +A
Sbjct: 662 RIMGEERPSMKEVAAELEA 680

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q0WNY5|WAKLN_ARATH Wall-associated receptor kinase-like 18 OS=Arabidopsis thaliana GN=WAKL18 PE=2 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 151/312 (48%), Gaps = 53/312 (16%)

Query: 4   NGAKVLEKLISSSKGKYNPIRSFCAEEL-KTTHNAIKN---GYKLYEGFFQNRPISGFFQ 59
           NG  +L + +++ +G     R F + EL K T N  +N   G+      ++   + G   
Sbjct: 419 NGGLLLLQELNTREGYVEKTRVFNSRELEKATENFSENRVLGHGGQGTVYKGMLVDG--- 475

Query: 60  ERPVSVMK---FDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC 116
            R V+V K    DE K + +   IN +V  SQ+ HR + KL+GCCLET++P+LV+E+I  
Sbjct: 476 -RTVAVKKSKVIDEDKLQEF---INEVVILSQINHRHVVKLLGCCLETEVPMLVYEFIIN 531

Query: 117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN 176
           G+L   I   H  +     +L   RL+IA+DIA A++YLH     P+  RD K +NIL +
Sbjct: 532 GNLFKHI---HEEESDDYTMLWGMRLRIAVDIAGALSYLHSSASSPIYHRDIKSTNILLD 588

Query: 177 EENVAKLFDFSFSISIPEGETHISELLSGLRAFD----------------------LARL 214
           E+  AK+ DF  S S+   +TH + ++SG   +                       LA L
Sbjct: 589 EKYRAKVADFGTSRSVTIDQTHWTTVISGTVGYVDPEYYQSSQYTEKSDVYSFGVILAEL 648

Query: 215 NEDDGYVVLL----------DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLI 264
              D  V+++          +H +   +E RL +IID  I  D  C    +Q+ A A + 
Sbjct: 649 ITGDKPVIMVQNTQEIVALAEHFRVAMKEKRLTDIIDARIRND--C--KPEQVMAVAKVA 704

Query: 265 FECVNESPVDRP 276
            +C++     RP
Sbjct: 705 MKCLSSKGKKRP 716

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LSV3|WAKLS_ARATH Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1

 Score =  122 bits (305), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 152/323 (47%), Gaps = 56/323 (17%)

Query: 4   NGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNA------IKNG--YKLYEGFFQNRPIS 55
           NG  +L + +S +       + F  E++K   N       +  G  + +Y+G   +  I 
Sbjct: 74  NGGGMLIERLSGAGSSNIDFKIFTEEDMKEATNGYDVSRILGQGGQWTVYKGILPDNSI- 132

Query: 56  GFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN 115
                  V++ K         +  IN ++  SQ+ HR + KL+GCCLET++P+LV+E+I 
Sbjct: 133 -------VAIKKTRLGDNNQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFIT 185

Query: 116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF 175
            GSL D    H         L   HRL+IA+++A AIAYLH G   P+I RD K  NIL 
Sbjct: 186 GGSLFD----HLHGSMFVSSLTWEHRLEIAIEVAGAIAYLHSGASIPIIHRDIKTENILL 241

Query: 176 NEENVAKLFDFSFSISIPEGETHISELLSGLRA------FDLARLNE-DDGY---VVLLD 225
           +E   AK+ DF  S   P  +  ++ ++ G         +    LNE  D Y   VVL++
Sbjct: 242 DENLTAKVADFGASKLKPMDKEQLTTMVQGTLGYLDPEYYTTWLLNEKSDVYSFGVVLME 301

Query: 226 -----------------HIKKYF----EEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLI 264
                            H+  YF    +E+RL+EIID  ++ +     NQ+++   A + 
Sbjct: 302 LISGQKALCFERPETSKHLVSYFVLATKENRLHEIIDDQVLNEE----NQREIHEAARVA 357

Query: 265 FECVNESPVDRP-MVDVAKKTQA 286
            EC      +RP M++VA + + 
Sbjct: 358 VECTRLKGEERPRMIEVAAELET 380

Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN8|WAK3_ARATH Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 150/316 (47%), Gaps = 42/316 (13%)

Query: 4   NGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERP- 62
           NG  +L + +S +       + F  E +K   N       L +G  Q     G   +   
Sbjct: 381 NGGGMLIQRLSGAGLSNIDFKIFTEEGMKEATNGYDESRILGQGG-QGTVYKGILPDNTI 439

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADR 122
           V++ K   +  R  D  I+ ++  SQ+ HR + K++GCCLET++P+LV+E+I  G+L D 
Sbjct: 440 VAIKKARLADSRQVDQFIHEVLVLSQINHRNVVKILGCCLETEVPLLVYEFITNGTLFD- 498

Query: 123 IRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAK 182
              H         L   HRL+IA+++A  +AYLH     P+I RD K +NIL +E   AK
Sbjct: 499 ---HLHGSIFDSSLTWEHRLRIAIEVAGTLAYLHSSASIPIIHRDIKTANILLDENLTAK 555

Query: 183 LFDFSFSISIPEGETHISELLSGLRA------FDLARLNE-DDGY---VVLLD------- 225
           + DF  S  IP  +  ++ ++ G         +    LNE  D Y   VVL++       
Sbjct: 556 VADFGASKLIPMDKEQLTTMVQGTLGYLDPEYYTTGLLNEKSDVYSFGVVLMELLSGQKA 615

Query: 226 ----------HIKKYF----EEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNES 271
                     H+  YF    EE+RL+EIID  ++ +     N +++Q  A +  EC    
Sbjct: 616 LCFERPQASKHLVSYFVSATEENRLHEIIDDQVLNED----NLKEIQEAARIAAECTRLM 671

Query: 272 PVDRP-MVDVAKKTQA 286
             +RP M +VA K +A
Sbjct: 672 GEERPRMKEVAAKLEA 687

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|O80795|Y1652_ARATH Probable inactive receptor-like protein kinase At1g65250 OS=Arabidopsis thaliana GN=At1g65250 PE=2 SV=1

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 104/204 (50%), Gaps = 26/204 (12%)

Query: 5   GAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNG---------YKLYEGFFQNRPIS 55
           GAK+LE+LI    GK NPI+ F A+E+    N   +          +K Y G  +N P+ 
Sbjct: 19  GAKLLEELIECCDGKSNPIKFFSADEILKATNDFSDSNFVLRLEVPFKWYSGKNENHPM- 77

Query: 56  GFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN 115
               ++ V       S  R    C +  V +    H+   KL+GCCLE   P++V+    
Sbjct: 78  -ILIKKDVGWW----SGLRVDRLCRDIAVSSMVSGHKNFMKLVGCCLELDYPVMVYH--- 129

Query: 116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF 175
                  ++ H+  +   +P     R+KIA DIA A+AYLH  FPRP ++R     NIL 
Sbjct: 130 ------SVKKHYKLEISEQPW--KKRMKIAEDIATALAYLHTAFPRPFVYRILSHWNILL 181

Query: 176 NEENVAKLFDFSFSISIPEGETHI 199
           +E+ VAKL DFS  +SIPEGET +
Sbjct: 182 DEDGVAKLTDFSHCVSIPEGETFV 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMT9|WAKLL_ARATH Putative wall-associated receptor kinase-like 13 OS=Arabidopsis thaliana GN=WAKL13 PE=2 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 150/323 (46%), Gaps = 48/323 (14%)

Query: 4   NGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQE-RP 62
           NG  +L++ +++++G+    + F + EL+   +   +   + +G  Q     G   + R 
Sbjct: 420 NGGLLLQQQLNTTQGRVEKTKLFSSRELEKATDNFNDNRVIGQGG-QGTVYKGMLVDGRS 478

Query: 63  VSVMK---FDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSL 119
           V+V K    DE K + +   IN ++  SQ+ HR + KL+GCCLET++PILV+E+I  G+L
Sbjct: 479 VAVKKSNVVDEDKLQEF---INEVIILSQINHRHVVKLLGCCLETEVPILVYEFIPNGNL 535

Query: 120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
                 H   +      L   R++IA+DI+ A +YLH     P+  RD K +NIL +E+ 
Sbjct: 536 FQ----HLHEEFDDYTALWGVRMRIAVDISGAFSYLHTAACSPIYHRDIKSTNILLDEKY 591

Query: 180 VAKLFDFSFSISIPEGETHISELLSGLRAF------------------------------ 209
            AK+ DF  S S+    TH + ++SG   +                              
Sbjct: 592 RAKVSDFGTSRSVSIDHTHWTTVISGTVGYVDPEYYGSSHFTEKSDVYSFGVVLVELITG 651

Query: 210 --DLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFEC 267
              +  L+E      L D+ +    E+RL EIID  I  D  C    +Q+ A A+L   C
Sbjct: 652 EKPVITLSETQEITGLADYFRLAMRENRLFEIIDARIRND--CK--LEQVIAVANLALRC 707

Query: 268 VNESPVDRPMVDVAKKTQANVCS 290
           + ++   RP +         +CS
Sbjct: 708 LKKTGKTRPDMREVSTALERICS 730

Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 149/319 (46%), Gaps = 48/319 (15%)

Query: 4   NGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPV 63
           NG  +L + +S +      ++ F  + +K   N       L +G  Q     G   +  +
Sbjct: 375 NGGGMLTQRLSGAGPSNVDVKIFTEDGMKKATNGYAESRILGQGG-QGTVYKGILPDNSI 433

Query: 64  SVMK----FDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSL 119
             +K     D S+   +   IN ++  SQ+ HR + KL+GCCLET++P+LV+E+I  G+L
Sbjct: 434 VAIKKARLGDSSQVEQF---INEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITNGTL 490

Query: 120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
            D    H         L   HRLKIA+++A  +AYLH     P+I RD K +NIL +   
Sbjct: 491 FD----HLHGSMIDSSLTWEHRLKIAIEVAGTLAYLHSSASIPIIHRDIKTANILLDVNL 546

Query: 180 VAKLFDFSFSISIPEGETHISELLSGLRA------FDLARLNE-DDGY---VVLLD---- 225
            AK+ DF  S  IP  +  +  ++ G         ++   LNE  D Y   VVL++    
Sbjct: 547 TAKVADFGASRLIPMDKEELETMVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSG 606

Query: 226 -------------HIKKYF----EEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECV 268
                        H+  YF    +E+RL+EII   +M +     N +++Q  A +  EC 
Sbjct: 607 QKALCFKRPQSSKHLVSYFATATKENRLDEIIGGEVMNED----NLKEIQEAARIAAECT 662

Query: 269 NESPVDRP-MVDVAKKTQA 286
                +RP M +VA K +A
Sbjct: 663 RLMGEERPRMKEVAAKLEA 681

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development. Required during plant's response to pathogen infection and in plant defense against heavy metal toxicity. Phosphorylates the oxygen-evolving enhancer protein 2 (OEE2) in an GRP-3-dependent manner.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
255582635	331	receptor protein kinase, putative [Ricin	0.924	0.815	0.421	2e-57
224123144	344	predicted protein [Populus trichocarpa]	0.907	0.770	0.407	4e-57
255542662	330	serine-threonine protein kinase, plant-t	0.948	0.839	0.373	4e-48
255542656	331	serine-threonine protein kinase, plant-t	0.910	0.803	0.362	6e-45
255542658	356	serine-threonine protein kinase, plant-t	0.955	0.783	0.357	2e-44
255542676	247	serine-threonine protein kinase, plant-t	0.671	0.793	0.466	4e-42
224061837	329	predicted protein [Populus trichocarpa]	0.890	0.790	0.353	3e-36
224065631	323	predicted protein [Populus trichocarpa]	0.924	0.835	0.360	7e-36
359493231	497	PREDICTED: inactive serine/threonine-pro	0.982	0.577	0.330	9e-35
297740943	321	unnamed protein product [Vitis vinifera]	0.941	0.856	0.351	2e-34

>gi|255582635|ref|XP_002532098.1| receptor protein kinase, putative [Ricinus communis] gi|223528232|gb|EEF30288.1| receptor protein kinase, putative [Ricinus communis]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 137/325 (42%), Positives = 192/325 (59%), Gaps = 55/325 (16%)

Query: 2   MMNGAKVLEKLISSSKGKYNPIRSFCAEELKTTHN--------AIKNGYKLYEGFFQNRP 53
           +MNG  +LEKLI+S  G+ NPIR F A+EL    +           +GYKLY        
Sbjct: 13  LMNGRMLLEKLIASCDGRCNPIRIFSADELSRATDDYDPRKIITQDSGYKLY-------- 64

Query: 54  ISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFE 112
            +G   ER +SV KF + K   Y  C N+I++A+QM  H+   KL+GCCLETQIP+LVFE
Sbjct: 65  -NGLLHERTISVKKFKD-KSEQYKYCYNDIMFATQMSKHKNFLKLLGCCLETQIPVLVFE 122

Query: 113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSN 172
            I  G+LA R+  +   +  ++PLL  HRLKIA++IANA++YLH  F RP++FR+ K  N
Sbjct: 123 PIEYGTLAGRL--YGPNKTLYQPLLWRHRLKIAVEIANAVSYLHTAFSRPIVFRNIKPLN 180

Query: 173 ILFNEENVAKLFDFSFSISIPEGETHISELLS---GLRAFDLAR---LNED--------- 217
           I  +E +VAKL DFS ++SIPEGE+H+ ++L+   GL A + A+    NE          
Sbjct: 181 IFLDECHVAKLSDFSLAVSIPEGESHVKDMLAGAWGLIAPEYAKTSCFNESQDVYNFGVF 240

Query: 218 -----------DGY-------VVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA 259
                      D Y       + L+DH+KK+  +DR  E +D +I+G+ S     QQLQA
Sbjct: 241 LLMLLTGQKVVDSYRPQAGEELGLVDHVKKFIADDRFYETVDSIILGEGSLPEKDQQLQA 300

Query: 260 FAHLIFECVNESPVDRP-MVDVAKK 283
           F  L F C++E+  DRP M+DVAK+
Sbjct: 301 FTLLSFRCISEADEDRPMMIDVAKE 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123144|ref|XP_002319005.1| predicted protein [Populus trichocarpa] gi|222857381|gb|EEE94928.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 132/324 (40%), Positives = 187/324 (57%), Gaps = 59/324 (18%)

Query: 4   NGAKVLEKLISSSKGKYNPIRSFCAEELKTTHN--------AIKNGYKLYEGFFQNRPIS 55
           NG+K+LEKL+    GK N IRSF A ELK   N           +GYKLY+GF Q RP  
Sbjct: 22  NGSKLLEKLVDICDGKCNSIRSFSATELKKATNNYDPQKILTGDSGYKLYKGFLQGRP-- 79

Query: 56  GFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYI 114
                  VSV KF +   + Y+ C N+IVYAS+M +H+   KL+GCCLE +IPILVFEY+
Sbjct: 80  -------VSVKKFKDDDEQ-YEYCFNDIVYASKMSVHKSFMKLLGCCLEARIPILVFEYV 131

Query: 115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNIL 174
              +L+D +    + + + +PLL   R KIAMD+ANA+A+LH  F +P++FR+ K  NIL
Sbjct: 132 GDWTLSDFL--WGSEEARCQPLLWIPRSKIAMDMANAVAFLHAAFSKPIVFRNIKPLNIL 189

Query: 175 FNEENVAKLFDFSFSISIPEGETHISE--------------------------------- 201
            ++ + AKL DFS SISIP+GE+H+ +                                 
Sbjct: 190 LDDNHEAKLSDFSISISIPKGESHVRDSVAGATGLIAPEYLTTGNFNEKQDVFNFGVFLL 249

Query: 202 -LLSGLRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF 260
            LLSG    D +R  ++   ++L DH+KK  E+DR N++ID  I+ + +  G +QQLQA+
Sbjct: 250 VLLSGQMVVDFSRPEKE---ILLQDHVKKCIEDDRFNKVIDSTIIAEGTWPGKEQQLQAY 306

Query: 261 AHLIFECVNESPVDRP-MVDVAKK 283
             L   C++E   DRP M+DV+K+
Sbjct: 307 TALSLRCISELAEDRPTMIDVSKE 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542662|ref|XP_002512394.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548355|gb|EEF49846.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/321 (37%), Positives = 179/321 (55%), Gaps = 44/321 (13%)

Query: 2   MMNGAKVLEKLISSSKGKYNPIRSFCAEEL-KTTHNAIKNGYKLYEGFFQNRPISGFFQE 60
           ++NG+K+LEK ++   G+ NPIR+F +EEL K T N  +      +G+F+     GF Q+
Sbjct: 8   LINGSKLLEKSVAFCNGRCNPIRNFSSEELEKATRNYNEKQVLKLDGYFE--LYKGFLQD 65

Query: 61  RPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINCGSL 119
           RPV V KF E         IN IVYAS M +H    KL+GCCLET  PILVFE     +L
Sbjct: 66  RPVIVKKFLEVG--VEQLAINEIVYASAMSVHINSIKLLGCCLETPSPILVFESAKEKTL 123

Query: 120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
           ADRI   +      EP+    RLKI  DIAN + Y+H  FPRP++ R+ K SNIL +E+ 
Sbjct: 124 ADRIIDRN--DDHFEPVKWKLRLKIVADIANVVVYIHTAFPRPIVHRNIKASNILLDEDY 181

Query: 180 VAKLFDFSFSISIPEGETHISEL----------------------------------LSG 205
           VAKL DFS  +SIPEG++ + ++                                  L+G
Sbjct: 182 VAKLSDFSLCVSIPEGKSRVRDIMAGTMGLIASESLATGYFNEKSDVYSFGVVLLVVLTG 241

Query: 206 LRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIF 265
            R+FD +R    + + +L++H+KK+ E     E++DP+I+ + + +   Q+L+ F  L  
Sbjct: 242 QRSFDFSRTETGEQF-LLVNHVKKHIETGGFKEMVDPIIVAEEAGNRKGQELEDFRDLAL 300

Query: 266 ECVNESPVDRP-MVDVAKKTQ 285
            C+++S  +RP M++VAK+ +
Sbjct: 301 RCIHDSAEERPTMIEVAKQLR 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542656|ref|XP_002512391.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548352|gb|EEF49843.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/323 (36%), Positives = 174/323 (53%), Gaps = 57/323 (17%)

Query: 1   MMMNGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQN---RPISGF 57
           +M NG  +LEK ++ + G+ NP+R F  +EL+   N+    Y  +  F+ +   R   G 
Sbjct: 14  LMRNGRSLLEKSVALNNGRGNPVRCFSVKELQNATNS----YSQHNVFYIDGTCRLYKGL 69

Query: 58  FQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINC 116
            ++RPV V K+D   P   +  +++IV AS+M +HR + KL+GCCLE++IPI VFEY   
Sbjct: 70  IRDRPVIVKKYDYKHPS--EDPVSDIVIASEMSVHRNVLKLLGCCLESEIPIPVFEYAEK 127

Query: 117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN 176
           G+L D +        Q   LL   RLKIA+D+A+ IAYLH  FPRP++ RD  L++IL +
Sbjct: 128 GTLEDYV--------QKTALLWKDRLKIAVDVASVIAYLHTAFPRPIVHRDISLASILLD 179

Query: 177 EENVAKLFDFSFSISIPEGETHISELLSG--------------------LRAFDLARL-- 214
           E+  AK+  FS SISIPEGETHI + ++G                    + +F +  L  
Sbjct: 180 EDCAAKVTGFSLSISIPEGETHIEDEVAGTIGYVAPEYFMKRMFNEKIDVYSFGVVLLVL 239

Query: 215 -------------NEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA 261
                        NE    VV    ++   + +R NEIIDP I+ +      +QQL++F 
Sbjct: 240 LTGHGPILRSPTTNESHALVVF---VEAKIKNERFNEIIDPAILEEGPWPEKEQQLKSFL 296

Query: 262 HLIFECVNESPVDRP-MVDVAKK 283
            L  +C  +   DRP + DVAK+
Sbjct: 297 TLAMQCTRKDEEDRPEITDVAKQ 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542658|ref|XP_002512392.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548353|gb|EEF49844.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 173/336 (51%), Gaps = 57/336 (16%)

Query: 1   MMMNGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQE 60
           +M NG  +LEK I+ + G+ NPIR F  +EL+T  N+      +YEG +      GF ++
Sbjct: 16  LMRNGGILLEKSIAFNNGRGNPIRWFSVDELQTATNSYSQNNVIYEGGWHTL-YKGFLRD 74

Query: 61  RPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINCGSL 119
           RPV V ++  +      C IN+IV+AS+M  H+ + KL+GCCLE++IPILVFEY   G L
Sbjct: 75  RPVIVKRY-RNNIHERVCPINDIVFASEMSRHKNVLKLLGCCLESEIPILVFEYAEKGKL 133

Query: 120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
            D I  + T      PLL   RLKIA+D AN IAYLH   PRPV+ RD  LSNI  +E+ 
Sbjct: 134 QDYI--YKTDSASFRPLLWKSRLKIAVDAANVIAYLHTACPRPVVHRDITLSNIWLDEDY 191

Query: 180 VAKLFDFSFSISIPEGETHISELLSGLRAFDL---------------------------- 211
           VAK+ DF+ S+SI EGETHI + + G   +                              
Sbjct: 192 VAKVTDFTVSMSILEGETHIEDFVLGTCGYAAPEYVRSGIFNEKIDVFSFGVLLLVLLTD 251

Query: 212 --------------ARLNEDDGYVVLLDHIKKYFEE---------DRLNEIIDPLIMGDR 248
                         AR +E  G +++   +    E+          +L+  IDP+I+ + 
Sbjct: 252 QKPFQGNWENILKDARFDEIIGSLIVEKGLWSEKEQLETFLTRTRQKLDLTIDPIIVEEG 311

Query: 249 SCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK 283
                +QQL+AF  L  +C++    +RP + DVAK+
Sbjct: 312 PWPEKEQQLKAFLMLGVQCIDPDEENRPEITDVAKQ 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542676|ref|XP_002512401.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548362|gb|EEF49853.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 130/206 (63%), Gaps = 10/206 (4%)

Query: 1   MMMNGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQE 60
           +M NG  +LEK I+ + G+ NPIR F  EEL+T  N+      +YEG +      GF +E
Sbjct: 8   LMRNGGILLEKSIAFNNGRGNPIRCFSVEELQTATNSYSQNNVIYEGGWHTH-YKGFLRE 66

Query: 61  RPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINCGSL 119
           RPV V ++  +      C IN+IV+AS+M  H+ + KL+GCCLE++IPILVFEY   G+L
Sbjct: 67  RPVIVKRY-RTNIHERVCPINDIVFASEMSRHKNVLKLLGCCLESEIPILVFEYAEKGNL 125

Query: 120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
            D I        + +      RLKIA+D AN IAYLH  FPRPV+ R   LSN+  +E++
Sbjct: 126 HDYIY-------KTDSASFRRRLKIAVDAANVIAYLHTAFPRPVVHRHITLSNVWLDEDS 178

Query: 180 VAKLFDFSFSISIPEGETHISELLSG 205
           VAK+ DFS S+SIPEGETHI + + G
Sbjct: 179 VAKVTDFSLSMSIPEGETHIEDFVMG 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061837|ref|XP_002300623.1| predicted protein [Populus trichocarpa] gi|222842349|gb|EEE79896.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 158/314 (50%), Gaps = 54/314 (17%)

Query: 5   GAKVLEKLISSSKGKYNPIRSFCAEELK-------------TTHNAIKNGYKLYEGFFQN 51
           G ++LE+LI+    + NPIR+F   +L+             T  +   +G++ YEG  + 
Sbjct: 27  GGELLEELIAFCNARSNPIRNFSLNQLQKAIDDYHPSHPLETLTDLEDSGFEWYEGILEQ 86

Query: 52  RPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQI-PIL 109
           R             + F +S  R       +IV +SQM  H  + KL GCCLE    P L
Sbjct: 87  R-------------LVFIKSFTRCTKEVYRDIVVSSQMSSHNNVLKLSGCCLEIPAGPAL 133

Query: 110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFK 169
           VFEY   G L    R+ H        L    RLKIA +IANA+ YLH  FPRP I RD K
Sbjct: 134 VFEYPENGCLE---RLIHDGS-----LTWGTRLKIAKEIANAVTYLHTAFPRPTIHRDIK 185

Query: 170 LSNILFNEENVAKLFDFSFSISIPEGETHISELLSG-----------LRAFDLARLNEDD 218
             NI   +   AKL +FS SISIPEGE+ + + L+G           + +F +  L    
Sbjct: 186 PRNIFLGQNYDAKLSNFSLSISIPEGESQVEDQLAGTIFFVDPVYTDVYSFGVLLLVLLT 245

Query: 219 GYVV------LLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESP 272
           G +       L+D++K   E+D++NE++DP I G+R  + +QQ ++A   L   C N S 
Sbjct: 246 GRITLQERIFLIDYVKDLVEQDQVNEVVDPRIRGNRGEAIDQQLVEASIELALRCTNGSG 305

Query: 273 VDRP-MVDVAKKTQ 285
            DRP M++VAK+ Q
Sbjct: 306 EDRPLMIEVAKELQ 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065631|ref|XP_002301893.1| predicted protein [Populus trichocarpa] gi|222843619|gb|EEE81166.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/319 (36%), Positives = 168/319 (52%), Gaps = 49/319 (15%)

Query: 1   MMMNGAKVLEKLISSSKGK--YNPIRSFCAEELKTTHNAIKNGYKLY--EGFFQNRPISG 56
           ++  G+++LE+ I    G+   NPIR+F  +++     AI++  K++  +   +     G
Sbjct: 10  LLDRGSELLEERIRFCDGRCRSNPIRNFSVDQI---CRAIQDFQKIHPLQSCIEFEWKKG 66

Query: 57  FFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLET-QIPILVFEYI 114
               R V + ++       Y     +IV +SQM  H  + KL+GCCLE  + P LV+EY 
Sbjct: 67  VLDGRLVFIKRYARGGQEVY----RDIVVSSQMSSHNNVLKLLGCCLEIPEGPALVYEYP 122

Query: 115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNIL 174
              SL DR  IH+   P         RLKIA +IANA+AYLH  FPRP+I RD K +NI 
Sbjct: 123 ENRSL-DR-HIHYGSLP------WGTRLKIAKEIANAVAYLHTAFPRPIIHRDIKPANIF 174

Query: 175 FNEENVAKLFDFSFSISIPEGETHIS-ELLSGLRAF---DLARLN--------------- 215
            N+   AKL DFSFSISIPEGE+ +  +LL G   F   D    N               
Sbjct: 175 LNQNYAAKLSDFSFSISIPEGESKVGDDLLVGTFGFLDPDYTMTNFVTEKTDVFSFGVLL 234

Query: 216 --------EDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFEC 267
                      G + L++H+K   E+DR++E +DP+I G+   + +QQQL+A   L   C
Sbjct: 235 LVLLTGRATRQGEIHLIEHVKLLVEQDRVHEAVDPMIRGNGGEAIDQQQLEASIELALRC 294

Query: 268 VNESPVDRP-MVDVAKKTQ 285
            ++S  DRP M++VAK+ Q
Sbjct: 295 TDDSGEDRPLMIEVAKEIQ 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493231|ref|XP_002265528.2| PREDICTED: inactive serine/threonine-protein kinase At1g67470-like [Vitis vinifera]

 Score =  153 bits (386), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 162/330 (49%), Gaps = 43/330 (13%)

Query: 2   MMNGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQER 61
           + NG+ +LEKL+SS  G+ NPIR+F  +EL+   N   N   +++ +  +    G  + R
Sbjct: 10  LKNGSLLLEKLVSSLNGRSNPIRNFSIKELEQATNKY-NSSLIFDRWTYSEWYKGSLEGR 68

Query: 62  PVSVMKFDESKPRTY-DCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINCGSL 119
            VSV KF       + +  I  I +A+Q+  H+ + KL GCCLETQ P+LV+EY   G +
Sbjct: 69  FVSVRKFHPVIDDAFLERVIKEITFATQLSAHKNVLKLFGCCLETQTPVLVYEYPVNGVV 128

Query: 120 ADRIRIH-HTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE 178
                IH  T     + L    RL+I+ DIA+ IAYLH  FPR +I R+  LS    +E+
Sbjct: 129 PLYDVIHPSTDGKSRQRLPWKSRLRISGDIAHVIAYLHTAFPRAIIHREVTLSFFFLDED 188

Query: 179 NVAKLFDFSFSISIPEGETHIS----------------------------------ELLS 204
            V KL +F F+I++PEG  ++                                   ELL+
Sbjct: 189 CVPKLSNFFFAIALPEGRKYVVDGVMGIEGFIAPEYEMTGMVTEKVDVFSFGKLLLELLT 248

Query: 205 GLRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLI 264
           G R  D   L  +DG ++L D IK Y E+  L+  +D  I+        + QL A   L 
Sbjct: 249 GRRTIDFGPLG-NDGELLLQDCIKTYVEDHELDGFVDASILPRGGEIHEELQLLAVTKLA 307

Query: 265 FECVNESPVDRP-MVDVAK---KTQANVCS 290
             C+  +   RP MV++AK   + Q  +CS
Sbjct: 308 LRCIMTAAEQRPTMVEIAKELRRIQRGICS 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740943|emb|CBI31255.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 160/319 (50%), Gaps = 44/319 (13%)

Query: 1   MMMNGAKVLEKLISSSKGKY-NPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQ 59
           M+ NG+ +L++ IS   GKY NPIRSFC +EL+   +    G              G  +
Sbjct: 6   MLKNGSLLLKERISYFNGKYFNPIRSFCMKELQNATDDYNTGLIFDHDVGNCIWYKGSLE 65

Query: 60  ERPVSV-MKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINCG 117
            R +SV   F E      +  IN IV ASQM  H+   KL+GCCLET+IPILV+E+ + G
Sbjct: 66  GRTISVRTNFYEG----VEMAINEIVIASQMSAHKNALKLLGCCLETRIPILVYEFPSGG 121

Query: 118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE 177
           SL DRI    +P     PL    RL+IA DIAN IAYLH+ FPR +I  D K S+   ++
Sbjct: 122 SLIDRI---FSPP---NPLSWKSRLRIAYDIANVIAYLHIAFPRSIIHTDIKPSSFFLDQ 175

Query: 178 ENVAKLFDFSFSISIPEGETHISE-------------LLSGLR-------AFDLARLNED 217
           +  AKL DFS SI++PEGE H+ +             L+SG+        +F +  L   
Sbjct: 176 DCAAKLSDFSLSITLPEGEMHVEDEIRGTFGYLAPETLISGVYTEKNDVFSFGILLLELL 235

Query: 218 DG----------YVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFEC 267
            G             + D+ + +     +N I+DP+I+        + Q QA   L   C
Sbjct: 236 IGKRAHSIMHEERASIQDYAQSFVNTYDINGIVDPIILAQPRGIHEELQFQAIFDLAMRC 295

Query: 268 VNESPVDRP-MVDVAKKTQ 285
             +   +RP +V+ AK+ +
Sbjct: 296 SMKDMDERPTIVNAAKEVR 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
TAIR|locus:2076596	340	AT3G57700 [Arabidopsis thalian	0.674	0.579	0.392	8.2e-37
TAIR|locus:2076671	355	AT3G57730 [Arabidopsis thalian	0.657	0.540	0.385	5.7e-36
TAIR|locus:2076681	359	AT3G57720 [Arabidopsis thalian	0.678	0.551	0.381	1.7e-34
TAIR|locus:2076646	334	AT3G57750 [Arabidopsis thalian	0.688	0.601	0.366	3e-33
TAIR|locus:2076586	351	AT3G57710 [Arabidopsis thalian	0.657	0.547	0.346	3.8e-33
TAIR|locus:2008818	389	AT1G67470 [Arabidopsis thalian	0.650	0.488	0.373	5.5e-32
TAIR|locus:2200375	396	AT1G65190 [Arabidopsis thalian	0.626	0.462	0.377	2.3e-31
TAIR|locus:2126316	786	AT4G31100 [Arabidopsis thalian	0.664	0.246	0.367	2.1e-30
TAIR|locus:2206235	372	AT1G65250 [Arabidopsis thalian	0.619	0.486	0.393	3.3e-30
TAIR|locus:2126271	793	AT4G31110 [Arabidopsis thalian	0.664	0.244	0.367	1.2e-29

TAIR|locus:2076596 AT3G57700 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
 Identities = 80/204 (39%), Positives = 117/204 (57%)

Query:     1 MMMNGAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQE 60
             +  NG+ +LE+LI++S G YNPIR+F ++++    N     Y + E  F      G  + 
Sbjct:    19 LQKNGSLLLEELIATSGGIYNPIRTFSSDQILQATNHFDWNYVISEDRFVW--YKGMIEN 76

Query:    61 RPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINCGSL 119
             RPV + KF +      D    +I  +S M  H+ + KL+GCCLE   P+LV EY   G+L
Sbjct:    77 RPVLIKKFQDCSVFDADNFYRDIAVSSLMSSHKNVLKLLGCCLEFPRPVLVCEYPEHGAL 136

Query:   120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
              + IR          P  +  RL+IA +IA+A+AYLH  FPR +I RD KL+NI  +E  
Sbjct:   137 -NCIRCGKEGVRSF-PWNV--RLRIAKEIADAVAYLHTEFPRTIIHRDLKLANIFLDENW 192

Query:   180 VAKLFDFSFSISIPEGETHISELL 203
              AKL  FS SI +PEGET +++++
Sbjct:   193 SAKLSSFSLSIVLPEGETGVNDMV 216

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2076671 AT3G57730 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 77/200 (38%), Positives = 111/200 (55%)

Query:     4 NGAKVLEKLISSSKGKYNPIRSFCAEEL-KTTHNAIKNGYKLYEGFFQNRPISGFFQERP 62
             NG+  L++LI    GK  PIRSF + ++ K T N   + +   EGF+      G  ++R 
Sbjct:    33 NGSIFLKELIVDCNGKSIPIRSFTSSQIRKATKNFDLSCFVAEEGFYIW--YKGVIEDRS 90

Query:    63 VSVMKFDESKPRTYDCC--INNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINCGSL 119
               + +F E K   Y       +IV +++M  H    KL+GCCLE   P+LVFE+   G L
Sbjct:    91 YMIKRFSEYKVTDYRVSEVYKDIVLSARMSNHNNFLKLLGCCLEFPFPVLVFEFAEHGVL 150

Query:   120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
               R  I  T   +   L L+ RLKI  +IANA+AYLH+ FP+ +I+RD K  ++  +   
Sbjct:   151 NYRGGI--TVNGEESLLPLSLRLKIGKEIANALAYLHMAFPKIIIYRDVKPLHVFLDNNW 208

Query:   180 VAKLFDFSFSISIPEGETHI 199
              AKL D SFSIS+ EG++ I
Sbjct:   209 TAKLSDLSFSISLEEGKSQI 228

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2076681 AT3G57720 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 79/207 (38%), Positives = 113/207 (54%)

Query:     4 NGAKVLEKLISSSKGKYNPIRSFCAEE-LKTTHNAIKNGYKLYEGFFQNRPISGFFQERP 62
             NG+  L++LI+   GK  PIR+F +++ LK T N   + +   EGF+      G  ++R 
Sbjct:    36 NGSIFLKELIADCNGKSIPIRNFSSDQILKATSNFGSSCFVTAEGFYVW--YKGIIEDRS 93

Query:    63 VSVMKFDESKPRTYDCC--INNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINCGSL 119
               + +F E K   Y      N IV +++M  H    KLIG CLE  +P+LVFEY   G L
Sbjct:    94 YMIKRFSEYKVTQYRVAEVYNEIVLSARMSNHNNFLKLIGFCLEFSLPVLVFEYAEHGVL 153

Query:   120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
               R  +    +    PL L  RLKI  +IANA+ YLH+ FP+ +I R  K  N+  +E  
Sbjct:   154 NHRGGVIVNGEEVILPLSL--RLKIGKEIANAVTYLHMAFPKILIHRHIKPRNVFLDENW 211

Query:   180 VAKLFDFSFSISIPEGETHIS-ELLSG 205
               KL DFS SI++PEG++ I  E + G
Sbjct:   212 TPKLSDFSISINLPEGKSRIEVECVQG 238

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2076646 AT3G57750 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
 Identities = 77/210 (36%), Positives = 113/210 (53%)

Query:     2 MMNGAKVLEKLISSSKGKYNPIRSFCAEE-LKTTHNAIKNGYKLYEGFFQNRPISGFFQE 60
             + NG  +LE+LI+S  GK NPIR F +++ LK T N  ++      G+F      G  +E
Sbjct:    13 LKNGGILLEELIASFDGKTNPIRCFSSDQILKATDNFSESRIISSWGYFIW--YKGVIEE 70

Query:    61 RPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINCGSL 119
             R VS+ K+      ++     +I  +SQM  H+   KLIGCCLE  +P LV EY   G L
Sbjct:    71 RQVSIKKWSSQNLSSFTEAYRDISVSSQMSGHKNALKLIGCCLEFDLPALVCEYTEHGPL 130

Query:   120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
                 R          P  +  RLKIA +IA+++ YLH  FP  ++ R+   +NI  +E  
Sbjct:   131 N---RDGGLSSGVVLPWKV--RLKIAKEIASSVTYLHTAFPETIVHRNINPTNIFIDENW 185

Query:   180 VAKLFDFSFSISIPEGETHISELLSGLRAF 209
              AKL DF F ++IPEGE ++ + + G+  F
Sbjct:   186 TAKLSDFWFCVAIPEGELYVEDDVKGVIGF 215

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2076586 AT3G57710 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 70/202 (34%), Positives = 110/202 (54%)

Query:     4 NGAKVLEKLISSSKGKYNPIRSFCAEE-LKTTHNAIKNGYKLYEGFFQNRPISGFFQERP 62
             NG+  L +L++   GK  PIRSF  E+ LK T+N   + +   + ++  +   G  ++R 
Sbjct:    26 NGSIFLRELVADCNGKSIPIRSFSPEQILKATNNFDSSCFVSQDVYY--KWYRGEIEDRS 83

Query:    63 VSVMKFDES----KPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINCG 117
               + +F E     K        N+IV +++M  H    +L+GCCLE   P+LVFE+   G
Sbjct:    84 YMIKRFSEDEITGKRHRVKEVYNDIVLSARMSNHSNFLQLLGCCLEFPFPVLVFEFAEHG 143

Query:   118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE 177
             ++  R  +    +    P  +  RLKI  +IANA+ YLH  FP+ +I RD K  ++  ++
Sbjct:   144 AMNQRGGVIVNGEESLLPWSV--RLKIGKEIANAVTYLHTAFPKIIIHRDVKPMHVFLDK 201

Query:   178 ENVAKLFDFSFSISIPEGETHI 199
                AKL D SFSIS+PEG++ I
Sbjct:   202 NWTAKLSDLSFSISLPEGKSRI 223

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2008818 AT1G67470 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
 Identities = 77/206 (37%), Positives = 116/206 (56%)

Query:     5 GAKVLEKLISSSKGKYNPIRSFCAEEL-KTTHN-AIKNGYKLYEGFFQNRPISGFFQERP 62
             GAK+L+ LI    GK NPI+ F A+E+ K T+N  + N        F  +  SG  +   
Sbjct:    19 GAKLLKDLIECCDGKSNPIKFFSADEIRKATNNFGVSNLVSELSHDFDYKWYSGKNENHD 78

Query:    63 VSVMKFDESKPRTY-DCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINCGSLA 120
             + +++   S+   Y D    +I  +S +  H+   KLIG CLE + P++V+     G   
Sbjct:    79 MILVRKAFSQSVYYKDTFFRDIAVSSMVSGHKNFLKLIGYCLEFEEPVMVYH----G--- 131

Query:   121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV 180
               ++ H+  +   +P     R+KIA DIA A+AYLH  FPRP ++R   L+NIL +E+ V
Sbjct:   132 --VKKHYHLESSEQPW--KRRMKIAEDIATALAYLHTAFPRPFVYRCLSLTNILLDEDGV 187

Query:   181 AKLFDFSFSISIPEGETHIS-ELLSG 205
             AKL DFSF +SIPEGET +  + ++G
Sbjct:   188 AKLMDFSFCVSIPEGETFVQVDYIAG 213

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2200375 AT1G65190 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 74/196 (37%), Positives = 111/196 (56%)

Query:     5 GAKVLEKLISSSKGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVS 64
             GAK+LE+LI    GK NPI+ F A+E++   N   +   +++  F  +  SG  +  P+ 
Sbjct:    19 GAKLLEELIECCDGKSNPIKFFSADEIRKATNIFSHSNLVHQEEFYCQWYSGKNENHPMI 78

Query:    65 VMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINCGSLADRI 123
             +++ D S  R  D    NI  +S +  H+   KL+GCCLE + P+ V+     G     +
Sbjct:    79 LIRKD-SNVRGGDLVCRNIAVSSMVSGHKNFMKLVGCCLELKYPVTVYH----G-----V 128

Query:   124 RIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKL 183
             + H+  +   +P     R+KIA DIA A+AYLH  FPRP+++      NIL +E+ VAKL
Sbjct:   129 KKHYGLEIDEKPW--KRRMKIAEDIATALAYLHTAFPRPLVYMILSHRNILLDEDGVAKL 186

Query:   184 FDFSFSISIPEGETHI 199
              DFS  +SIPEGET +
Sbjct:   187 TDFSHCVSIPEGETFV 202

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2126316 AT4G31100 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
 Identities = 76/207 (36%), Positives = 117/207 (56%)

Query:     4 NGAKVLEKLISSSKGKYNPIRSFCAEEL-KTTHNAIKNGYKLYEGFFQNRPISGFFQE-R 61
             NG  +L++ +++ +G     R F ++EL K T N  +N    + G  Q     G   + R
Sbjct:   410 NGGLLLQQELNTRQGVVEKARIFTSKELEKATENFSENRVLGHGG--QGTVYKGMLVDGR 467

Query:    62 PVSVMK---FDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGS 118
              V+V K    DE K + +   IN +V  SQ+ HR + KL+GCCLET++PILV+E+I  G+
Sbjct:   468 TVAVKKSKVIDEDKLQEF---INEVVILSQINHRHVVKLLGCCLETEVPILVYEFIINGN 524

Query:   119 LADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE 178
             L   I   H  +     ++   RL+IA+DIA A++YLH     P+  RD K +NIL +E+
Sbjct:   525 LFKHI---HEEEADDYTMIWGMRLRIAVDIAGALSYLHSAASSPIYHRDIKSTNILLDEK 581

Query:   179 NVAKLFDFSFSISIPEGETHISELLSG 205
               AK+ DF  S S+   +TH + ++SG
Sbjct:   582 YRAKVADFGTSRSVTIDQTHWTTVISG 608

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2206235 AT1G65250 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 79/201 (39%), Positives = 113/201 (56%)

Query:     5 GAKVLEKLISSSKGKYNPIRSFCAEE-LKTTHNAIKNGYKL-YEGFFQNRPISGFFQERP 62
             GAK+LE+LI    GK NPI+ F A+E LK T++   + + L  E  F  +  SG  +  P
Sbjct:    19 GAKLLEELIECCDGKSNPIKFFSADEILKATNDFSDSNFVLRLEVPF--KWYSGKNENHP 76

Query:    63 VSVMKFDE---SKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINCGS 118
             + ++K D    S  R    C  +I  +S +  H+   KL+GCCLE   P++V+      S
Sbjct:    77 MILIKKDVGWWSGLRVDRLC-RDIAVSSMVSGHKNFMKLVGCCLELDYPVMVYH-----S 130

Query:   119 LADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE 178
             +    ++  + QP  +      R+KIA DIA A+AYLH  FPRP ++R     NIL +E+
Sbjct:   131 VKKHYKLEISEQPWKK------RMKIAEDIATALAYLHTAFPRPFVYRILSHWNILLDED 184

Query:   179 NVAKLFDFSFSISIPEGETHI 199
              VAKL DFS  +SIPEGET +
Sbjct:   185 GVAKLTDFSHCVSIPEGETFV 205

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2126271 AT4G31110 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 76/207 (36%), Positives = 115/207 (55%)

Query:     4 NGAKVLEKLISSSKGKYNPIRSFCAEEL-KTTHNAIKNGYKLYEGFFQNRPISGFFQE-R 61
             NG  +L + +++ +G     R F + EL K T N  +N    + G  Q     G   + R
Sbjct:   419 NGGLLLLQELNTREGYVEKTRVFNSRELEKATENFSENRVLGHGG--QGTVYKGMLVDGR 476

Query:    62 PVSVMK---FDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGS 118
              V+V K    DE K + +   IN +V  SQ+ HR + KL+GCCLET++P+LV+E+I  G+
Sbjct:   477 TVAVKKSKVIDEDKLQEF---INEVVILSQINHRHVVKLLGCCLETEVPMLVYEFIINGN 533

Query:   119 LADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE 178
             L   I   H  +     +L   RL+IA+DIA A++YLH     P+  RD K +NIL +E+
Sbjct:   534 LFKHI---HEEESDDYTMLWGMRLRIAVDIAGALSYLHSSASSPIYHRDIKSTNILLDEK 590

Query:   179 NVAKLFDFSFSISIPEGETHISELLSG 205
               AK+ DF  S S+   +TH + ++SG
Sbjct:   591 YRAKVADFGTSRSVTIDQTHWTTVISG 617

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	292
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-16
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	9e-16
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-15
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	4e-15
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	8e-14
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-12
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-12
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	3e-10
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	5e-10
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	7e-10
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	4e-09
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	4e-09
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	2e-08
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-08
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	8e-08
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-07
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	4e-07
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	5e-07
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	6e-07
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	1e-06
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	3e-06
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	3e-06
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	3e-06
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-06
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	5e-06
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	5e-06
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	9e-06
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	9e-06
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	9e-06
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	9e-06
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	1e-05
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	1e-05
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-05
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	2e-05
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	2e-05
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	2e-05
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-05
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	3e-05
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	4e-05
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	6e-05
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	6e-05
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	7e-05
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	9e-05
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	1e-04
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	1e-04
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-04
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	1e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	1e-04
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	1e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	2e-04
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	2e-04
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	2e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	2e-04
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	2e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-04
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-04
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	2e-04
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	3e-04
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	7e-04
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	9e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	9e-04
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	9e-04
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	9e-04
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	0.001
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	0.001
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	0.001
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	0.001
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	0.002
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	0.002
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	0.003
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	0.003
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	0.003
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	0.004
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	0.004
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	0.004
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	0.004
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	0.004
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	0.004
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	0.004

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEP--LLLTHRLKIAMDI 148
           H  + +L+G C E +   LV EY+  G L D +R      P  E   L L   L  A+ I
Sbjct: 55  HPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQI 114

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           A  + YL     +  + RD    N L  E+ V K+ DF  S  + + +
Sbjct: 115 AKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDD 159

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 74.2 bits (183), Expect = 9e-16
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 11/139 (7%)

Query: 60  ERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINCGS 118
            + V++    +    +    +   +   + + H  I KL G   +     LV EY   GS
Sbjct: 18  GKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGS 77

Query: 119 LADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE 178
           L D ++ +     + E       L+I + I   + YLH      +I RD K  NIL + +
Sbjct: 78  LKDLLKENEGKLSEDE------ILRILLQILEGLEYLHS---NGIIHRDLKPENILLDSD 128

Query: 179 N-VAKLFDFSFSISIPEGE 196
           N   KL DF  S  +   +
Sbjct: 129 NGKVKLADFGLSKLLTSDK 147

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  + KL+G C E +   +V EY+  G L   +R +         L L+  L  A+ IA 
Sbjct: 60  HPNVVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKN------RPKLSLSDLLSFALQIAR 113

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
            + YL     +  I RD    N L  E  V K+ DF  S  + + + +
Sbjct: 114 GMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYY 158

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 73.0 bits (180), Expect = 4e-15
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  I KL+G C E +  ++V EY+  G L D +R +     + + L L+  L  A+ IA 
Sbjct: 60  HPNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKN-----RPKELSLSDLLSFALQIAR 114

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            + YL     +  I RD    N L  E  V K+ DF  S  + + +
Sbjct: 115 GMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD 157

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 69.5 bits (171), Expect = 8e-14
 Identities = 48/181 (26%), Positives = 68/181 (37%), Gaps = 40/181 (22%)

Query: 17  KGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTY 76
           KG           E   T  A+K    L EG         F +E   S+MK         
Sbjct: 17  KGTLKGD-----GEGTETKVAVK---TLKEGA-SEEEREEFLEE--ASIMK--------- 56

Query: 77  DCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPL 136
                      ++ H  I +L+G C + +   +V EY+  G L D +R H       E L
Sbjct: 57  -----------KLSHPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKH------GEKL 99

Query: 137 LLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            L   L++A+ IA  + YL     +  + RD    N L  E  V K+ DF  S  I E +
Sbjct: 100 TLKDLLQMALQIAKGMEYLE---SKNFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDD 156

Query: 197 T 197
            
Sbjct: 157 Y 157

Length = 258

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 66.0 bits (162), Expect = 1e-12
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
            ++ H  I +L     +     LV EY   G L D ++       +   L          
Sbjct: 52  KKLKHPNIVRLYDVFEDEDKLYLVMEYCEGGDLFDLLK-------KRGRLSEDEARFYLR 104

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHIS 200
            I +A+ YLH    + ++ RD K  NIL +E+   KL DF  +  +  GE   +
Sbjct: 105 QILSALEYLH---SKGIVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTT 155

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  I +LI    +     LV EY   G L D +        +  PL      KIA+ I  
Sbjct: 57  HPNIVRLIDAFEDKDHLYLVMEYCEGGDLFDYLS-------RGGPLSEDEAKKIALQILR 109

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            + YLH      +I RD K  NIL +E  V K+ DF  +
Sbjct: 110 GLEYLHS---NGIIHRDLKPENILLDENGVVKIADFGLA 145

Length = 260

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 13/110 (11%)

Query: 91  HRCIFKLIGCCLET--QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDI 148
           H  I K  GCC E   +   L+ EY+  GSL D +       P+H+ L L   L  A  I
Sbjct: 65  HENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYL-------PKHK-LNLAQLLLFAQQI 116

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
              +AYLH    +  I RD    N+L + + + K+ DF  + ++PEG  +
Sbjct: 117 CEGMAYLH---SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY 163

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  + +L G  L   + ++V E    GSL DR+R            L++     A+ IAN
Sbjct: 55  HENLIRLYGVVLTHPL-MMVTELAPLGSLLDRLRKDALG-----HFLISTLCDYAVQIAN 108

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
            + YL     +  I RD    NIL   ++  K+ DF    ++P+ E H
Sbjct: 109 GMRYLES---KRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDH 153

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 58.2 bits (141), Expect = 7e-10
 Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH-------HTPQPQHEPLLLT 139
           +   H  I K  G C E   PI+VFEY+  G L   +R H        +P      L L+
Sbjct: 63  TNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLS 122

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
             L+IA+ IA+ + YL     +  + RD    N L   + V K+ DF  S
Sbjct: 123 QLLQIAVQIASGMVYLAS---QHFVHRDLATRNCLVGYDLVVKIGDFGMS 169

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
              I KL     +     LV EY++ GSL D ++       +  PL  +  L I   I +
Sbjct: 57  PPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKI----GRKGPLSESEALFILAQILS 112

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEE-NVAKLFDFSFSISIPEGETH 198
           A+ YLH    + +I RD K  NIL + +  V KL DF  +  +P+  + 
Sbjct: 113 ALEYLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGST 158

Length = 384

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 91  HRCIFKLIGCCLET--QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDI 148
           H  I K  G C +   +   L+ EY+  GSL D ++ H   + Q   + L   L  +  I
Sbjct: 65  HENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRH---RDQ---INLKRLLLFSSQI 118

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG 195
              + YL     +  I RD    NIL   E++ K+ DF  +  +PE 
Sbjct: 119 CKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPED 162

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 20/118 (16%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHE---------------- 134
           H  I KL+G C   +   L+FEY+  G L + +R H +P+ Q                  
Sbjct: 67  HPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLR-HRSPRAQCSLSHSTSSARKCGLNPL 125

Query: 135 PLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           PL  T +L IA  +A  +AYL     R  + RD    N L  E  V K+ DF  S +I
Sbjct: 126 PLSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNI 180

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           + + H  + +L+G  L+     +V EY+  GSL D +R   +       + L  +L  A+
Sbjct: 55  TTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLR---SRGRAV--ITLAQQLGFAL 109

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
           D+   + YL     +  + RD    N+L +E+ VAK+ DF
Sbjct: 110 DVCEGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDF 146

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 9/131 (6%)

Query: 62  PVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLAD 121
            V++           +  IN I    +  H  I K  G  L+     +V E+ + GSL D
Sbjct: 27  EVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKD 86

Query: 122 RIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVA 181
            ++  +      + L  +    +  ++   + YLH      +I RD K +NIL   +   
Sbjct: 87  LLKSTN------QTLTESQIAYVCKELLKGLEYLH---SNGIIHRDIKAANILLTSDGEV 137

Query: 182 KLFDFSFSISI 192
           KL DF  S  +
Sbjct: 138 KLIDFGLSAQL 148

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMD 147
           Q  H  I KLIG C++ Q   +V E +  GSL   +R     + +   L +   L++++D
Sbjct: 48  QYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLR---KKKNR---LTVKKLLQMSLD 101

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLR 207
            A  + YL     +  I RD    N L  E NV K+ DF  S    E E  I  +  GL+
Sbjct: 102 AAAGMEYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMS---REEEGGIYTVSDGLK 155

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 59  QERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGS 118
           +E  +  M+  +         IN I+      H  I       L      +V EY++ GS
Sbjct: 45  KEVAIKKMRLRKQNKEL---IINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGS 101

Query: 119 LADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE 178
           L D I         +EP +      +  ++   + YLH    + VI RD K  NIL +++
Sbjct: 102 LTDIIT--QNFVRMNEPQIAY----VCREVLQGLEYLH---SQNVIHRDIKSDNILLSKD 152

Query: 179 NVAKLFDFSFS 189
              KL DF F+
Sbjct: 153 GSVKLADFGFA 163

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 109 LVFEYINCGSLADRIRIHHT-PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRD 167
           +V EY++ GSLAD ++     P    EP+L      IA  I   + YLH    R +I RD
Sbjct: 76  IVLEYMDGGSLADLLKKVGKIP----EPVLA----YIARQILKGLDYLHT--KRHIIHRD 125

Query: 168 FKLSNILFNEENVAKLFDF 186
            K SN+L N +   K+ DF
Sbjct: 126 IKPSNLLINSKGEVKIADF 144

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 16/140 (11%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCL-ETQIPILVF-EYINCGSLA 120
           V  ++         +     I   S + H  I +  G    E +  + +F EY++ GSL+
Sbjct: 30  VKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLS 89

Query: 121 DRIRIHHTPQPQHEPL--LLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE 178
             ++         EP+    T        I   +AYLH      ++ RD K +NIL + +
Sbjct: 90  SLLK---KFGKLPEPVIRKYTR------QILEGLAYLHS---NGIVHRDIKGANILVDSD 137

Query: 179 NVAKLFDFSFSISIPEGETH 198
            V KL DF  +  + + ET 
Sbjct: 138 GVVKLADFGCAKRLGDIETG 157

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
           I  + +  Q+ H    +  GC L+     LV EY   GS +D + +H  P  + E   +T
Sbjct: 69  IKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAIT 127

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF-SFSISIP 193
           H           +AYLH      +I RD K  NIL  E    KL DF S S S P
Sbjct: 128 H------GALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP 173

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)

Query: 87  SQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIA 145
           +Q+ H  + +L+G  +E +  + +V EY+  GSL D +R         + LL     K +
Sbjct: 54  TQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL-----KFS 108

Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           +D+  A+ YL        + RD    N+L +E+NVAK+ DF  +
Sbjct: 109 LDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLT 149

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 13/116 (11%)

Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC-GSLADRIRIHHTPQPQHEPLLL 138
           I  + +  Q+ H    +  GC L      LV EY  C GS +D + +H  P  + E   +
Sbjct: 63  IKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEY--CLGSASDILEVHKKPLQEVEIAAI 120

Query: 139 THRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF-SFSISIP 193
            H           +AYLH       I RD K  NIL  E    KL DF S S+  P
Sbjct: 121 CH------GALQGLAYLH---SHERIHRDIKAGNILLTEPGTVKLADFGSASLVSP 167

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 14/115 (12%)

Query: 80  INNIVYASQMIHRC----IFKLIGCCL-ETQIPILVFEYINCGSLADRIRIHHTPQPQHE 134
              I+    ++H+C    I    G       I I + EY++ GSL   ++      P  E
Sbjct: 43  QKQILRELDILHKCNSPYIVGFYGAFYNNGDISICM-EYMDGGSLDKILKEVQGRIP--E 99

Query: 135 PLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            +L     KIA+ +   + YLH      +I RD K SNIL N     KL DF  S
Sbjct: 100 RILG----KIAVAVLKGLTYLHE--KHKIIHRDVKPSNILVNSRGQIKLCDFGVS 148

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 14/83 (16%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLK-IAMDIANAIAYLH-VGFPRPVIFR 166
           LV EY   G L   +          E      R +  A +I  A+ YLH +G    +I+R
Sbjct: 70  LVLEYAPGGELFSHL--------SKEGRFSEERARFYAAEIVLALEYLHSLG----IIYR 117

Query: 167 DFKLSNILFNEENVAKLFDFSFS 189
           D K  NIL + +   KL DF  +
Sbjct: 118 DLKPENILLDADGHIKLTDFGLA 140

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 46.7 bits (112), Expect = 5e-06
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 109 LVFEYINCGSLAD-RIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRD 167
           LVFEY +     D +  +   P P    L+ +    I   +   +AY H      ++ RD
Sbjct: 75  LVFEYCDM----DLKKYLDKRPGPLSPNLIKS----IMYQLLRGLAYCHS---HRILHRD 123

Query: 168 FKLSNILFNEENVAKLFDFSFS--ISIP 193
            K  NIL N + V KL DF  +    IP
Sbjct: 124 LKPQNILINRDGVLKLADFGLARAFGIP 151

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMD 147
           Q  H  I KLIG C + Q   +V E +  G     +R       + + L     +K A+D
Sbjct: 48  QYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLR------KKKDELKTKQLVKFALD 101

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            A  +AYL     +  I RD    N L  E NV K+ DF  S
Sbjct: 102 AAAGMAYLES---KNCIHRDLAARNCLVGENNVLKISDFGMS 140

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHE--------PLLLTHRL 142
           H+ I +  G C E +  ++VFEY+  G L   +R H                 L L   L
Sbjct: 66  HQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQML 125

Query: 143 KIAMDIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
            IA  IA+ + YL  + F    + RD    N L  +  V K+ DF  S  I
Sbjct: 126 AIASQIASGMVYLASLHF----VHRDLATRNCLVGQGLVVKIGDFGMSRDI 172

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 46.2 bits (109), Expect = 9e-06
 Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 11/115 (9%)

Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
           I  + +  ++ H    +  GC L      LV EY   GS +D + +H  P  + E   +T
Sbjct: 63  IKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAVT 121

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF-SFSISIP 193
           H           +AYLH      +I RD K  NIL +E  + KL DF S SI  P
Sbjct: 122 H------GALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP 167

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 13/113 (11%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           +Q+ H CI +LIG C    + +LV E    G L   ++      P  +   L H+     
Sbjct: 51  AQLDHPCIVRLIGVCKGEPL-MLVMELAPLGPLLKYLKKRRE-IPVSDLKELAHQ----- 103

Query: 147 DIANAIAYLH-VGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
            +A  +AYL    F    + RD    N+L    + AK+ DF  S ++  G  +
Sbjct: 104 -VAMGMAYLESKHF----VHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDY 151

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  I K IG    +    ++ EY   GSL   I+    P P+    +  ++      +  
Sbjct: 58  HPNIVKYIGSIETSDSLYIILEYAENGSLRQIIK-KFGPFPESLVAVYVYQ------VLQ 110

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
            +AYLH    + VI RD K +NIL  ++ V KL DF
Sbjct: 111 GLAYLH---EQGVIHRDIKAANILTTKDGVVKLADF 143

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 11/155 (7%)

Query: 43  KLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCC 101
           ++YEG ++ R   G   E  V+V    ES   +     +   +  S+  H+ I +LIG  
Sbjct: 21  EVYEGLYRGRD--GDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVS 78

Query: 102 LETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHV-GFP 160
            E     ++ E +  G L   +R +     +   L +   L  A D+A    YL    F 
Sbjct: 79  FERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHF- 137

Query: 161 RPVIFRDFKLSNILFN---EENVAKLFDFSFSISI 192
              I RD    N L        VAK+ DF  +  I
Sbjct: 138 ---IHRDIAARNCLLTCKGPGRVAKIADFGMARDI 169

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQH---------EPLLLTHR 141
           H+ I  L+G C +     ++ EY   G+L + +R    P P +         E L     
Sbjct: 77  HKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDL 136

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           +  A  +A  + YL     R  I RD    N+L  E+NV K+ DF  +
Sbjct: 137 VSCAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDNVMKIADFGLA 181

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           LVFEY+   +L + +       P         +L        AIAY H      +I RD 
Sbjct: 77  LVFEYVER-TLLELLEASPGGLPPDAVRSYIWQL------LQAIAYCH---SHNIIHRDI 126

Query: 169 KLSNILFNEENVAKLFDFSFSISIPEG 195
           K  NIL +E  V KL DF F+ ++   
Sbjct: 127 KPENILVSESGVLKLCDFGFARALRAR 153

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP---------QPQHEPLLLTHR 141
           H+ I  L+G C +     +V EY   G+L D +R    P         +P  E L     
Sbjct: 75  HKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDL 134

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +  A  +A  + +L     +  I RD    N+L  E++V K+ DF  +  I
Sbjct: 135 VSFAYQVARGMEFLA---SKKCIHRDLAARNVLVTEDHVMKIADFGLARDI 182

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
           I  + +  ++ H    +  GC L      LV EY   GS +D + +H  P  + E   +T
Sbjct: 73  IKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAIT 131

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF-SFSISIP 193
           H           +AYLH      +I RD K  NIL  E    KL DF S SI+ P
Sbjct: 132 H------GALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASIASP 177

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 13/121 (10%)

Query: 71  SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQ 130
           S+    D  +N IV  S + H  I       ++    ++  EY N G+L D+I       
Sbjct: 39  SEKERRDA-LNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIV------ 91

Query: 131 PQHEPLLLTHRLKIAM--DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSF 188
            + +  L    + +     I +A++Y+H      ++ RD K  NI   +  + KL DF  
Sbjct: 92  -RQKGQLFEEEMVLWYLFQIVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGI 147

Query: 189 S 189
           S
Sbjct: 148 S 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 41/132 (31%), Positives = 55/132 (41%), Gaps = 33/132 (25%)

Query: 91  HRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIA 149
           H  + +L   C E + PI +V EY++ GSL D ++       + + L L   + +A  IA
Sbjct: 60  HDKLVQLYAVCSEEE-PIYIVTEYMSKGSLLDFLK-----SGEGKKLRLPQLVDMAAQIA 113

Query: 150 NAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAF 209
             +AYL     R  I RD    NIL  E  V K+ DF                       
Sbjct: 114 EGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFG---------------------- 148

Query: 210 DLARLNEDDGYV 221
            LARL EDD Y 
Sbjct: 149 -LARLIEDDEYT 159

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 143 KIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           KIA  +   ++YLH    R +I RD K SNIL   +   KL DF  S
Sbjct: 109 KIAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVS 152

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 88  QMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           ++ H  + +L G C E + PI LVFE++  G L+D +R       Q         L + +
Sbjct: 55  KLSHPKLVQLYGVCTE-RSPICLVFEFMEHGCLSDYLR------AQRGKFSQETLLGMCL 107

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           D+   +AYL       VI RD    N L  E  V K+ DF  +
Sbjct: 108 DVCEGMAYLE---SSNVIHRDLAARNCLVGENQVVKVSDFGMT 147

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP------QPQHEP---LLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + +R    P       P   P   L     
Sbjct: 83  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDL 142

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF  +  I
Sbjct: 143 VSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDI 190

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRI---RIHHTPQPQHEPLLLTHRLK 143
            ++ H  I K      E     +V EY + G L+ +I   +    P P+ + L       
Sbjct: 54  KKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQIL------D 107

Query: 144 IAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
             + +  A+ YLH    R ++ RD K  NI      + KL DF  S
Sbjct: 108 WFVQLCLALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDFGIS 150

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 13/104 (12%)

Query: 88  QMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR-LKIA 145
           ++ H  + +L G C + Q PI +V EY+  G L + +R       + +  L T   L + 
Sbjct: 55  KLSHPNLVQLYGVCTK-QRPIFIVTEYMANGCLLNYLR-------ERKGKLGTEWLLDMC 106

Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            D+  A+ YL        I RD    N L  E+NV K+ DF  +
Sbjct: 107 SDVCEAMEYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLA 147

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           LV  Y++ GSL D ++  +      E ++ T    +  ++   + YLH       I RD 
Sbjct: 76  LVMPYLSGGSLLDIMKSSYPRGGLDEAIIAT----VLKEVLKGLEYLH---SNGQIHRDI 128

Query: 169 KLSNILFNEENVAKLFDFSFSISIPEG 195
           K  NIL  E+   K+ DF  S S+ +G
Sbjct: 129 KAGNILLGEDGSVKIADFGVSASLADG 155

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 11/128 (8%)

Query: 61  RPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLA 120
           R V+V K D  K +  +   N +V      H  I ++    L      +V E++  G+L 
Sbjct: 45  RQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALT 104

Query: 121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV 180
           D +    T    +E  + T    + + +  A+++LH    + VI RD K  +IL   +  
Sbjct: 105 DIV----THTRMNEEQIAT----VCLAVLKALSFLHA---QGVIHRDIKSDSILLTSDGR 153

Query: 181 AKLFDFSF 188
            KL DF F
Sbjct: 154 VKLSDFGF 161

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP-------QPQHEPLLLT 139
           + + H  I K  G C+E    I+VFEY+  G L   +R H              E L  +
Sbjct: 62  TNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAE-LTQS 120

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
             L IA  IA  + YL     +  + RD    N L  E  + K+ DF  S
Sbjct: 121 QMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKIGDFGMS 167

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 10/145 (6%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADR 122
           V  ++  ++ P+T     + +     + H  + K  G  +  +   +  EY + G+L + 
Sbjct: 30  VKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEEL 89

Query: 123 IRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAK 182
           +  H     +H   + T +L         +AYLH      ++ RD K +NI  +   V K
Sbjct: 90  LE-HGRILDEHVIRVYTLQLLEG------LAYLH---SHGIVHRDIKPANIFLDHNGVIK 139

Query: 183 LFDFSFSISIPEGETHISELLSGLR 207
           L DF  ++ +    T + E +  L 
Sbjct: 140 LGDFGCAVKLKNNTTTMGEEVQSLA 164

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 143 KIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           KIA+ I  A+ YLH      VI RD K SN+L N     KL DF  S
Sbjct: 107 KIAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGIS 151

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 20/129 (15%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQH-------------- 133
           Q+ H  + KL G C +    +L+ EY   GSL   +R      P +              
Sbjct: 59  QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDN 118

Query: 134 ---EPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI 190
                L +   +  A  I+  + YL       ++ RD    N+L  E    K+ DF  S 
Sbjct: 119 PDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLAARNVLVAEGRKMKISDFGLSR 175

Query: 191 SIPEGETHI 199
            + E ++++
Sbjct: 176 DVYEEDSYV 184

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 109 LVFEYINCGSLADRIR-IHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRD 167
           LV E    GS+ D ++ +    +   E  +      I  +    +AYLH      VI RD
Sbjct: 86  LVMELCGGGSVTDLVKGLRKKGKRLKEEWIAY----ILRETLRGLAYLH---ENKVIHRD 138

Query: 168 FKLSNILFNEENVAKLFDFSFS 189
            K  NIL  +    KL DF  S
Sbjct: 139 IKGQNILLTKNAEVKLVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 13/89 (14%)

Query: 100 CCLETQIPI-LVFEYINCGSLADRI-RIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHV 157
            C +T+  +  V EY+N G L   I R     +P             A +I   + +LH 
Sbjct: 63  SCFQTKDRLFFVMEYVNGGDLMFHIQRSGRFDEP--------RARFYAAEIVLGLQFLH- 113

Query: 158 GFPRPVIFRDFKLSNILFNEENVAKLFDF 186
              R +I+RD KL N+L + E   K+ DF
Sbjct: 114 --ERGIIYRDLKLDNVLLDSEGHIKIADF 140

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 15/112 (13%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHH---TPQPQHEPLLLTHRLK 143
           +++ H+ + +L+G  L   + I V E ++ G+L + +R          Q         L+
Sbjct: 54  TKLHHKNLVRLLGVILHNGLYI-VMELMSKGNLVNFLRTRGRALVSVIQ--------LLQ 104

Query: 144 IAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG 195
            ++D+A  + YL     + ++ RD    NIL +E+ VAK+ DF  +     G
Sbjct: 105 FSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG 153

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQH---------EPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + +R    P  ++         E +     
Sbjct: 80  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDL 139

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           +     +A  + YL     +  I RD    N+L  E NV K+ DF  +
Sbjct: 140 VSCTYQVARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLA 184

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 12/115 (10%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH---------HTPQPQHEPLL 137
           + + H  I K  G C +    I+VFEY+  G L   +R H           P+     L 
Sbjct: 62  TNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELG 121

Query: 138 LTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           L+  L IA  IA+ + YL     +  + RD    N L     + K+ DF  S  +
Sbjct: 122 LSQMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVGANLLVKIGDFGMSRDV 173

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 83  IVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL 142
           I   S + HR I + +G   E     +  E +  GSL+  +R    P   +E  ++ +  
Sbjct: 56  IALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFY-- 113

Query: 143 KIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-ENVAKLFDFSFS 189
                I   + YLH      ++ RD K  N+L N    V K+ DF  S
Sbjct: 114 --TKQILEGLKYLH---DNQIVHRDIKGDNVLVNTYSGVVKISDFGTS 156

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 91  HRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIH-HTPQPQHEPLLLTHRLKIAMDI 148
           H  + +L G C   Q PI +V EY++ G L + +R H    QP          L++  D+
Sbjct: 58  HEKLVQLYGVC-TKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQ-------LLEMCKDV 109

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
              +AYL     +  I RD    N L +++   K+ DF  S
Sbjct: 110 CEGMAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLS 147

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 18/104 (17%)

Query: 88  QMIHRCIFKLIGCCLETQIP--ILVFEYI--NCGSLADRIRIHHTPQPQHEPLLLTHRLK 143
           ++ H  I +L             +VFEY+  +   L D   +  T   Q         +K
Sbjct: 54  KLRHPNIVRLKEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTE-SQ---------IK 103

Query: 144 -IAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
                +   + YLH      ++ RD K SNIL N + V KL DF
Sbjct: 104 CYMKQLLEGLQYLHS---NGILHRDIKGSNILINNDGVLKLADF 144

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 15/85 (17%)

Query: 105 QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVI 164
           +I +L+ E+++ GSL     I                  +A  I + IAYLH    R ++
Sbjct: 146 EIQVLL-EFMDGGSLEGT-HIADEQFLAD----------VARQILSGIAYLH---RRHIV 190

Query: 165 FRDFKLSNILFNEENVAKLFDFSFS 189
            RD K SN+L N     K+ DF  S
Sbjct: 191 HRDIKPSNLLINSAKNVKIADFGVS 215

Length = 353

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 94  IFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLL----LTHRLKIAMDIA 149
           + +L+G     Q  ++V E +  G L   +R    P+ ++ P L    L   +++A +IA
Sbjct: 71  VVRLLGVVSTGQPTLVVMELMAKGDLKSYLR-SRRPEAENNPGLGPPTLQKFIQMAAEIA 129

Query: 150 NAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           + +AYL     +  + RD    N +  E+   K+ DF  +  I E +
Sbjct: 130 DGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETD 173

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 11/82 (13%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHE-PLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRD 167
           +V EY   GS++D ++I +    + E   +L   LK        + YLH       I RD
Sbjct: 75  IVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLK-------GLEYLH---SNKKIHRD 124

Query: 168 FKLSNILFNEENVAKLFDFSFS 189
            K  NIL NEE  AKL DF  S
Sbjct: 125 IKAGNILLNEEGQAKLADFGVS 146

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 12/82 (14%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM-DIANAIAYLHVGFPRPVIFRD 167
           L+ +Y+N G L       H  Q +H        +++ + +I  A+ +LH      +I+RD
Sbjct: 82  LILDYVNGGEL-----FTHLYQREH---FTESEVRVYIAEIVLALDHLH---QLGIIYRD 130

Query: 168 FKLSNILFNEENVAKLFDFSFS 189
            KL NIL + E    L DF  S
Sbjct: 131 IKLENILLDSEGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  I + +G CL+     +  E++  GS++  +     P P  EP+      K    I +
Sbjct: 61  HVNIVQYLGTCLDDNTISIFMEFVPGGSISSILN-RFGPLP--EPVFC----KYTKQILD 113

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
            +AYLH      V+ RD K +N++     + KL DF
Sbjct: 114 GVAYLH---NNCVVHRDIKGNNVMLMPNGIIKLIDF 146

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           S   H  I KL+G CL  +   ++ E +  G L   +R     +     L L   L I +
Sbjct: 54  SNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICL 113

Query: 147 DIANAIAYLH-VGFPRPVIFRDFKLSNILFNEEN-----VAKLFDFSFSISI 192
           D+A    YL  + F    I RD    N L +E+      V K+ DF  +  I
Sbjct: 114 DVAKGCVYLEQMHF----IHRDLAARNCLVSEKGYDADRVVKIGDFGLARDI 161

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 143 KIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           K+ + I  A+ YL       VI RD K SNIL +     KL DF  S
Sbjct: 118 KMTVAIVKALHYLKE--KHGVIHRDVKPSNILLDASGNVKLCDFGIS 162

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 84  VYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLK 143
           V AS + H  + +L+G CL +Q+  L+ + +  G L D +R H   +       L   L 
Sbjct: 62  VMAS-VDHPHVVRLLGICLSSQV-QLITQLMPLGCLLDYVRNH---KDNIGSQYL---LN 113

Query: 144 IAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
             + IA  ++YL     + ++ RD    N+L       K+ DF  +  +   E  
Sbjct: 114 WCVQIAKGMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKE 165

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP---------QPQHEPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + +R    P         +   E L     
Sbjct: 77  HKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDL 136

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF  +
Sbjct: 137 VSCAYQVARGMEYLA---SQKCIHRDLAARNVLVTEDNVMKIADFGLA 181

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 13/111 (11%)

Query: 83  IVYASQMIHRC----IFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLL 138
           I+   Q++H C    I    G  L      +  E+++CGSL DRI        +  P+ +
Sbjct: 50  ILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDCGSL-DRI------YKKGGPIPV 102

Query: 139 THRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
               KIA+ +   + YL+      ++ RD K SNIL N     KL DF  S
Sbjct: 103 EILGKIAVAVVEGLTYLY--NVHRIMHRDIKPSNILVNSRGQIKLCDFGVS 151

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 11/87 (12%)

Query: 101 CLETQIPIL-VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF 159
           C +T+  +  V EY+N G L     + H  + +  P    H    + +I+ A+ YLH   
Sbjct: 64  CFQTESRLFFVIEYVNGGDL-----MFHMQRQRKLPE--EHARFYSAEISLALNYLH--- 113

Query: 160 PRPVIFRDFKLSNILFNEENVAKLFDF 186
            R +I+RD KL N+L + E   KL D+
Sbjct: 114 ERGIIYRDLKLDNVLLDSEGHIKLTDY 140

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 104 TQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP 162
           TQ PI ++ EY+  GSL D ++      P+   L +   + +A  IA  +A++     + 
Sbjct: 71  TQEPIYIITEYMENGSLVDFLK-----TPEGIKLTINKLIDMAAQIAEGMAFIER---KN 122

Query: 163 VIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            I RD + +NIL +E    K+ DF  +  I + E
Sbjct: 123 YIHRDLRAANILVSETLCCKIADFGLARLIEDNE 156

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMD 147
           Q  H  I +LIG C + Q   +V E +  G     +R   T  P+   L +   +++  +
Sbjct: 49  QYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLR---TEGPR---LKVKELIQMVEN 102

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            A  + YL     +  I RD    N L  E+NV K+ DF  S
Sbjct: 103 AAAGMEYLE---SKHCIHRDLAARNCLVTEKNVLKISDFGMS 141

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 12/108 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIR----IHHTPQPQHE---PLLLTHR-- 141
           H  I  L+G C       +  EY   G+L D +R    +   P    E      LT +  
Sbjct: 62  HPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQL 121

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           L+ A D+A  + YL     +  I RD    N+L  E   +K+ DF  S
Sbjct: 122 LQFASDVATGMQYLS---EKQFIHRDLAARNVLVGENLASKIADFGLS 166

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMD 147
           ++ H  + +L+G C       ++ E++  G+L D +R     + +   ++L   L +A  
Sbjct: 58  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR--ECNRQEVNAVVL---LYMATQ 112

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           I++A+ YL     +  I RD    N L  E ++ K+ DF  S
Sbjct: 113 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS 151

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 11/77 (14%)

Query: 110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFK 169
           + EY   GS  D ++    P    E  +      I  ++   + YLH       I RD K
Sbjct: 77  IMEYCGGGSCLDLLK----PGKLDETYIAF----ILREVLLGLEYLH---EEGKIHRDIK 125

Query: 170 LSNILFNEENVAKLFDF 186
            +NIL +EE   KL DF
Sbjct: 126 AANILLSEEGDVKLADF 142

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 14/109 (12%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR--------- 141
           H  I  L+G C       L  EY   G+L D +R     +       + +          
Sbjct: 67  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETD-PAFAIANSTASTLSSQQ 125

Query: 142 -LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            L  A D+A  + YL     +  I RD    NIL  E  VAK+ DF  S
Sbjct: 126 LLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLS 171

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 54/222 (24%), Positives = 83/222 (37%), Gaps = 44/222 (19%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  I KLIG C   +   L+ EYI   +L++ +R           L    R KIA+ IA 
Sbjct: 742 HPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR----------NLSWERRRKIAIGIAK 791

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKL---------FDFSFSIS----IPEGET 197
           A+ +LH      V+  +     I+ + ++   L          D    IS     PE   
Sbjct: 792 ALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLRLSLPGLLCTDTKCFISSAYVAPETRE 851

Query: 198 H---------------ISELLSGLRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDP 242
                           + ELL+G    D     E   +  +++  +  + +  L+  IDP
Sbjct: 852 TKDITEKSDIYGFGLILIELLTGKSPADA----EFGVHGSIVEWARYCYSDCHLDMWIDP 907

Query: 243 LIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRPMVDVAKKT 284
            I GD S   NQ ++    +L   C    P  RP  +   KT
Sbjct: 908 SIRGDVSV--NQNEIVEVMNLALHCTATDPTARPCANDVLKT 947

Length = 968

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 16/81 (19%)

Query: 109 LVFEYI--NCGSLADRIRIHHTPQPQHEPLLLTHRLK-IAMDIANAIAYLHVGFPRPVIF 165
           LV EY   +  SL D +     P P  E      ++K + + +   + YLH  F   +I 
Sbjct: 85  LVMEYCEQDLASLLDNM-----PTPFSES-----QVKCLMLQLLRGLQYLHENF---IIH 131

Query: 166 RDFKLSNILFNEENVAKLFDF 186
           RD K+SN+L  ++   K+ DF
Sbjct: 132 RDLKVSNLLLTDKGCLKIADF 152

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  I + +G     +   +  EY+  GS+   +R +   + Q         L+       
Sbjct: 67  HLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLE------- 119

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            +AYLH    + ++ RD K  N+L + + + K+ DF  S
Sbjct: 120 GLAYLH---SKGILHRDLKADNLLVDADGICKISDFGIS 155

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 17/91 (18%)

Query: 100 CCLETQIPIL-VFEYINCGSLADRI---RIHHTPQPQHEPLLLTHRLKIAMDIANAIAYL 155
           CC +T   +  V E++N G L   I   R     + +            A +I +A+ +L
Sbjct: 63  CCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARF----------YAAEITSALMFL 112

Query: 156 HVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
           H    + +I+RD KL N+L + E   KL DF
Sbjct: 113 H---DKGIIYRDLKLDNVLLDHEGHCKLADF 140

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 91  HRCIFKLIGCCLETQ------IPILVFEYINCGSLADRI---RIHHTPQPQHEPLLLTHR 141
           H  + +LIG CL+T        P+++  ++  G L   +   R+   PQ     +L+   
Sbjct: 59  HPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLV--- 115

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            K   DIA+ + YL     +  I RD    N + NE     + DF  S  I  G+
Sbjct: 116 -KFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGD 166

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 11/87 (12%)

Query: 101 CLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF 159
           C +T   + LV EY+N G L     + H  + +  P    H    A +I  A+ +LH   
Sbjct: 64  CFQTTSRLFLVIEYVNGGDL-----MFHMQRQRKLPE--EHARFYAAEICIALNFLH--- 113

Query: 160 PRPVIFRDFKLSNILFNEENVAKLFDF 186
            R +I+RD KL N+L + +   KL D+
Sbjct: 114 ERGIIYRDLKLDNVLLDADGHIKLTDY 140

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           H+  I   +  A+ Y+H G    VI RD K SNIL N +   KL DF  + S+ E E
Sbjct: 108 HKRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLARSLSELE 161

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 100 CCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVG 158
            C +T   +  V EY+N G L   I+     +   EP    H +  A +IA  + +LH  
Sbjct: 68  SCFQTMDRLYFVMEYVNGGDLMYHIQQVGKFK---EP----HAVFYAAEIAIGLFFLH-- 118

Query: 159 FPRPVIFRDFKLSNILFNEENVAKLFDF 186
             + +I+RD KL N++ + E   K+ DF
Sbjct: 119 -SKGIIYRDLKLDNVMLDAEGHIKIADF 145

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.98
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.98
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.98
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.98
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.98
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.98
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.98
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.98
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.98
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.98
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.98
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.98
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.98
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.98
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.98
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.98
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.98
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.98
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.98
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.98
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.98
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.98
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.98
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.98
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.98
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.98
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.98
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.98
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.98
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.98
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.98
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.98
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.98
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.98
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.98
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.98
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.98
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.98
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.98
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.98
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.98
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.98
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.98
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.98
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.98
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.98
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.98
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.98
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.98
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.98
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.98
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.98
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.98
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.97
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.97
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.97
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.97
KOG0584	632	consensus Serine/threonine protein kinase [General	99.97
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.97
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.97
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.97
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.97
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.97
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.97
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.97
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.97
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.97
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.97
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.97
KOG3653	534	consensus Transforming growth factor beta/activin	99.97
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.97
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.97
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.97
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.97
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.97
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.97
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.97
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.97
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.97
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.97
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.97
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.97
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.97
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.97
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.97
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.97
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.97
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.97
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.97
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.97
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.97
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.97
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.97
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.97
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.97
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.97
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.97
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.97
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.97
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.97
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.97
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.97
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.97
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.97
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.97
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.97
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.97
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.97
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.97
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.97
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.97
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.97
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.97
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.97
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.97
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.97
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.97
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.97
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.97
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.97
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.97
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.97
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.97
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.97
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.97
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.97
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.97
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.97
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.97
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.97
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.97
KOG0610	459	consensus Putative serine/threonine protein kinase	99.97
PHA03211	461	serine/threonine kinase US3; Provisional	99.97
PTZ00036	440	glycogen synthase kinase; Provisional	99.97
KOG0586	596	consensus Serine/threonine protein kinase [General	99.97
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.97
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.97
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.97
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.97
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.97
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.97
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.97
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.97
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.97
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.97
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.97
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.97
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.97
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.97
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.97
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.97
PHA03209	357	serine/threonine kinase US3; Provisional	99.97
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.96
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.96
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.96
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.96
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.96
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.96
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.96
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.96
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.96
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.96
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.96
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.96
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.96
PHA03207	392	serine/threonine kinase US3; Provisional	99.96
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.96
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.96
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.96
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.96
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.96
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.96
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.96
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.96
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.96
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.96
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.96
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.96
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.96
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.96
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.96
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.96
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.96
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.96
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.96
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.96
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.96
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.96
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.96
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.96
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.96
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.96
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.96
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.96
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.96
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.96
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.96
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.96
PLN00009	294	cyclin-dependent kinase A; Provisional	99.96
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.96
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.96
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.96
PHA03210	501	serine/threonine kinase US3; Provisional	99.96
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.96
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.96
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.96
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.96
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.96
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.96
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.95
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.95
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.95
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.95
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.95
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.95
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.95
PTZ00284	467	protein kinase; Provisional	99.95
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.95
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.95
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.95
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.95
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.95
PHA02882	294	putative serine/threonine kinase; Provisional	99.95
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.95
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.95
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.95
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.95
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.95
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.95
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.95
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.95
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.95
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.95
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.94
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.94
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.94
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.94
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.93
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.93
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.92
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.92
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.92
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.92
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.92
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.91
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.91
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.91
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.91
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.91
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.9
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.89
KOG1152	772	consensus Signal transduction serine/threonine kin	99.89
PRK09188	365	serine/threonine protein kinase; Provisional	99.89
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.88
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.88
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.87
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.87
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.87
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.87
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.86
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.84
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.83
PLN00181	793	protein SPA1-RELATED; Provisional	99.82
PRK10345	210	hypothetical protein; Provisional	99.82
PRK14879	211	serine/threonine protein kinase; Provisional	99.78
smart00090	237	RIO RIO-like kinase.	99.78
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.77
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.76
PRK12274	218	serine/threonine protein kinase; Provisional	99.76
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.74
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.73
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.73
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.72
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.72
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.72
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.69
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.69
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.68
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.67
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.66
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.65
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.65
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.62
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.58
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.56
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.53
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.51
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.46
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.4
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.38
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.31
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.26
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.23
KOG3087	229	consensus Serine/threonine protein kinase [General	99.19
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.18
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.17
KOG1243	690	consensus Protein kinase [General function predict	99.15
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.14
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.11
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	99.1
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	99.1
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.07
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.92
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.82
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.76
PRK09902	216	hypothetical protein; Provisional	98.76
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.68
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.63
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.54
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.39
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.37
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.36
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.31
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.29
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.1
PF01636	239	APH: Phosphotransferase enzyme family This family	98.04
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.98
PLN02876	822	acyl-CoA dehydrogenase	97.97
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.94
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	97.85
PRK10593	297	hypothetical protein; Provisional	97.78
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.77
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.64
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.63
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.46
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.44
COG4248	637	Uncharacterized protein with protein kinase and he	97.41
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.4
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.38
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.23
PRK05231	319	homoserine kinase; Provisional	97.2
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.07
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	97.02
KOG0576	829	consensus Mitogen-activated protein kinase kinase	96.93
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	96.93
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	96.9
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	96.9
PLN02236	344	choline kinase	96.68
KOG1236	565	consensus Predicted unusual protein kinase [Genera	96.62
PLN02756	418	S-methyl-5-thioribose kinase	96.28
KOG2268	465	consensus Serine/threonine protein kinase [Signal	96.26
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	96.06
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.03
KOG2270	520	consensus Serine/threonine protein kinase involved	96.01
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	95.94
PRK11768	325	serine/threonine protein kinase; Provisional	95.69
KOG1290	590	consensus Serine/threonine protein kinase [Signal	95.64
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	95.62
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	95.52
COG2334	331	Putative homoserine kinase type II (protein kinase	95.16
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	95.03
PRK06148	1013	hypothetical protein; Provisional	94.42
PTZ00384	383	choline kinase; Provisional	93.86
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	93.75
PRK10271	188	thiK thiamine kinase; Provisional	92.38
PF04655	253	APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r	92.01

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-44  Score=312.96  Aligned_cols=250  Identities=34%  Similarity=0.562  Sum_probs=204.2

Q ss_pred             ccccccHHHHHHHhhC--------ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCC
Q 044211           22 PIRSFCAEELKTTHNA--------IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRC   93 (292)
Q Consensus        22 ~~~~~~~~~~~~~~~~--------~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~n   93 (292)
                      +.+.|++++++.+|++        +|+||.||+|...        ++..||||.++........+|.+|+.++.+++|||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~--------~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~N  132 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLS--------DGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPN  132 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEEC--------CCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcC
Confidence            6788999999999987        8999999999997        77999999887764331456999999999999999


Q ss_pred             ccceeeeeecCC-cceEEEeccCCCChhHHhhhhCCCCCCCC-CCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCC
Q 044211           94 IFKLIGCCLETQ-IPILVFEYINCGSLADRIRIHHTPQPQHE-PLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLS  171 (292)
Q Consensus        94 iv~~~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~~~~~~-~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~  171 (292)
                      +|+++|+|...+ ..++|+||+++|||.+++  +..    .. +++|..+++|+.++|.||+|||+.+..+|+|||||++
T Consensus       133 lv~LlGyC~e~~~~~~LVYEym~nGsL~d~L--~~~----~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKss  206 (361)
T KOG1187|consen  133 LVKLLGYCLEGGEHRLLVYEYMPNGSLEDHL--HGK----KGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSS  206 (361)
T ss_pred             cccEEEEEecCCceEEEEEEccCCCCHHHHh--CCC----CCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHH
Confidence            999999999988 499999999999999999  322    22 8899999999999999999999987779999999999


Q ss_pred             ceEecCCCceEEeecccccccCCCCccchhhhhccccccccccc------CCC-----CeE--EEc-cch----------
Q 044211          172 NILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLN------EDD-----GYV--VLL-DHI----------  227 (292)
Q Consensus       172 nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~------~~~-----Gvi--el~-~~~----------  227 (292)
                      |||+|+++++||+|||+|+..............||.+|.+|+|.      .|+     ||+  |++ |+.          
T Consensus       207 NILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~  286 (361)
T KOG1187|consen  207 NILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGE  286 (361)
T ss_pred             HeeECCCCCEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCccc
Confidence            99999999999999999966543111111111789999777655      455     998  888 774          


Q ss_pred             -------hhhhhccchhhhccccccc-CCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          228 -------KKYFEEDRLNEIIDPLIMG-DRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       228 -------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                             ++......+.+++|+.+.. ..+.   ..+...+..+..+|++.+|..|| |.||+++|+.+.
T Consensus       287 ~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~---~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~  353 (361)
T KOG1187|consen  287 LSLVEWAKPLLEEGKLREIVDPRLKEGEYPD---EKEVKKLAELALRCLRPDPKERPTMSQVVKELEGIL  353 (361)
T ss_pred             ccHHHHHHHHHHCcchhheeCCCccCCCCCh---HHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhc
Confidence                   2333344567777777663 2221   15677899999999999999999 999999997654

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-44  Score=295.41  Aligned_cols=240  Identities=18%  Similarity=0.226  Sum_probs=199.3

Q ss_pred             cccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeee
Q 044211           25 SFCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCL  102 (292)
Q Consensus        25 ~~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~  102 (292)
                      .++..+++..... .|+.|+||++.++.       +++.+|+|.+... .+...+++.+|+++++..+||+||.+||+|.
T Consensus        75 ~i~~~dle~~~~lG~G~gG~V~kv~Hk~-------t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~  147 (364)
T KOG0581|consen   75 GISLSDLERLGVLGSGNGGTVYKVRHKP-------TGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFY  147 (364)
T ss_pred             ccCHHHhhhhhhcccCCCcEEEEEEEcC-------CCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEE
Confidence            4566677776665 99999999999987       9999999999654 4455678999999999999999999999999


Q ss_pred             cCC-cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCce
Q 044211          103 ETQ-IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVA  181 (292)
Q Consensus       103 ~~~-~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~  181 (292)
                      .+. ...++||||++|||+++++       ..+.+++..+.+++.+|++||.|||+  .++|+||||||+||||+..|.+
T Consensus       148 ~~~~~isI~mEYMDgGSLd~~~k-------~~g~i~E~~L~~ia~~VL~GL~YLh~--~~~IIHRDIKPsNlLvNskGeV  218 (364)
T KOG0581|consen  148 SNGEEISICMEYMDGGSLDDILK-------RVGRIPEPVLGKIARAVLRGLSYLHE--ERKIIHRDIKPSNLLVNSKGEV  218 (364)
T ss_pred             eCCceEEeehhhcCCCCHHHHHh-------hcCCCCHHHHHHHHHHHHHHHHHHhh--ccCeeeccCCHHHeeeccCCCE
Confidence            988 4999999999999999994       33669999999999999999999994  3899999999999999999999


Q ss_pred             EEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhh---ccchhhhccccc
Q 044211          182 KLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFE---EDRLNEIIDPLI  244 (292)
Q Consensus       182 kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~---~~~~~~~~~~~~  244 (292)
                      ||||||.|..+.+.   ...++.||..||+||-....           |+.  |+. |+.+-...   .....++++...
T Consensus       219 KicDFGVS~~lvnS---~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv  295 (364)
T KOG0581|consen  219 KICDFGVSGILVNS---IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIV  295 (364)
T ss_pred             EeccccccHHhhhh---hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHh
Confidence            99999999988764   46778999999888655432           766  888 66532222   234556666666


Q ss_pred             ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          245 MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+.+|..+...+++++.+++..||++||.+|| +.|++++
T Consensus       296 ~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  296 DEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            55554444235999999999999999999999 9998864

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-43  Score=300.95  Aligned_cols=245  Identities=21%  Similarity=0.301  Sum_probs=194.2

Q ss_pred             cccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeE-EEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeee
Q 044211           25 SFCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERP-VSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGC  100 (292)
Q Consensus        25 ~~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~-vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~  100 (292)
                      .++++++...... .|+||+||+|.|         .|+. ||+|.+.....  ...+.|.+|+.+|++++|||||+++|+
T Consensus        37 ~i~~~~l~~~~~iG~G~~g~V~~~~~---------~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~  107 (362)
T KOG0192|consen   37 EIDPDELPIEEVLGSGSFGTVYKGKW---------RGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGA  107 (362)
T ss_pred             ecChHHhhhhhhcccCCceeEEEEEe---------CCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEE
Confidence            3444444433333 899999999999         6666 99999976422  225689999999999999999999999


Q ss_pred             eecCC-cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-cccCCCCCCceEecCC
Q 044211          101 CLETQ-IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP-VIFRDFKLSNILFNEE  178 (292)
Q Consensus       101 ~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~-i~H~dlk~~nili~~~  178 (292)
                      |..+. .+.+||||+++|+|.+++...     ....+++..+++|+.|||.||.|||   +.+ ||||||||+|||++.+
T Consensus       108 ~~~~~~~~~iVtEy~~~GsL~~~l~~~-----~~~~l~~~~~l~~aldiArGm~YLH---~~~~iIHrDLK~~NiLv~~~  179 (362)
T KOG0192|consen  108 CTSPPGSLCIVTEYMPGGSLSVLLHKK-----RKRKLPLKVRLRIALDIARGMEYLH---SEGPIIHRDLKSDNILVDLK  179 (362)
T ss_pred             EcCCCCceEEEEEeCCCCcHHHHHhhc-----ccCCCCHHHHHHHHHHHHHHHHHHh---cCCCeeecccChhhEEEcCC
Confidence            99887 789999999999999999321     3678999999999999999999999   777 9999999999999999


Q ss_pred             C-ceEEeecccccccCCCCccchhhhhcccccccccccC--CC-----------CeE--EEccchhhhhhccchhhhccc
Q 044211          179 N-VAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNE--DD-----------GYV--VLLDHIKKYFEEDRLNEIIDP  242 (292)
Q Consensus       179 ~-~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~--~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~  242 (292)
                      + ++||+|||+++...... .......||+.|++||+..  +.           |++  ||+.+..||..... ......
T Consensus       180 ~~~~KI~DFGlsr~~~~~~-~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~-~~~~~~  257 (362)
T KOG0192|consen  180 GKTLKIADFGLSREKVISK-TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP-VQVASA  257 (362)
T ss_pred             CCEEEECCCccceeecccc-ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH-HHHHHH
Confidence            8 99999999998775432 1223367999999888777  33           888  99944445544443 333333


Q ss_pred             cc-ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          243 LI-MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       243 ~~-~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .. .+.++..+ ..+++.+..||.+||+.||+.|| +.+|+..|+.+..
T Consensus       258 v~~~~~Rp~~p-~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~  305 (362)
T KOG0192|consen  258 VVVGGLRPPIP-KECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMS  305 (362)
T ss_pred             HHhcCCCCCCC-ccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHH
Confidence            33 34444333 45899999999999999999999 9999999998764

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-42  Score=297.06  Aligned_cols=248  Identities=23%  Similarity=0.287  Sum_probs=201.1

Q ss_pred             cccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec
Q 044211           25 SFCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE  103 (292)
Q Consensus        25 ~~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~  103 (292)
                      .+..+++...... +|-||.||.|.|.        ....||+|.++.. ....+.|++|+++|++|+|+|||+++|+|..
T Consensus       202 ei~r~~l~l~~~LG~G~FG~V~~g~~~--------~~~~vavk~ik~~-~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~  272 (468)
T KOG0197|consen  202 EIPREELKLIRELGSGQFGEVWLGKWN--------GSTKVAVKTIKEG-SMSPEAFLREAQIMKKLRHEKLVKLYGVCTK  272 (468)
T ss_pred             eecHHHHHHHHHhcCCccceEEEEEEc--------CCCcccceEEecc-ccChhHHHHHHHHHHhCcccCeEEEEEEEec
Confidence            4566666666665 9999999999995        4559999999875 2345779999999999999999999999999


Q ss_pred             CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEE
Q 044211          104 TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKL  183 (292)
Q Consensus       104 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl  183 (292)
                      ...++|||||++.|||.++++.     ..+..+...+.+.++.|||+||+||+   ++++|||||.++||||++++.+||
T Consensus       273 ~~piyIVtE~m~~GsLl~yLr~-----~~~~~l~~~~Ll~~a~qIaeGM~YLe---s~~~IHRDLAARNiLV~~~~~vKI  344 (468)
T KOG0197|consen  273 QEPIYIVTEYMPKGSLLDYLRT-----REGGLLNLPQLLDFAAQIAEGMAYLE---SKNYIHRDLAARNILVDEDLVVKI  344 (468)
T ss_pred             CCceEEEEEecccCcHHHHhhh-----cCCCccchHHHHHHHHHHHHHHHHHH---hCCccchhhhhhheeeccCceEEE
Confidence            8899999999999999999953     25678999999999999999999999   999999999999999999999999


Q ss_pred             eecccccccCCCCccchhhhhcccccc------cccccCCC-----CeE--EEccchhhhhhccchhhhcccccccCCCC
Q 044211          184 FDFSFSISIPEGETHISELLSGLRAFD------LARLNEDD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       184 ~Dfg~a~~~~~~~~~~~~~~~g~~~y~------~~~~~~~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      +|||+|+.+.++.+.......-...|.      .+.++.|+     ||+  ||++....++......+.+.. +...+..
T Consensus       345 sDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~-le~GyRl  423 (468)
T KOG0197|consen  345 SDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLEL-LERGYRL  423 (468)
T ss_pred             cccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHH-HhccCcC
Confidence            999999976666665554444444554      44556666     999  999333333333334444433 4444455


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +.|..||+.+.+||..||..+|++|| |..+...|+++...
T Consensus       424 p~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~  464 (468)
T KOG0197|consen  424 PRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFTS  464 (468)
T ss_pred             CCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence            55579999999999999999999999 99999999988754

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.1e-41  Score=294.80  Aligned_cols=224  Identities=21%  Similarity=0.313  Sum_probs=199.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC---CCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE---SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~---~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|||+.||.++...       +|+.||+|++.+   .++...+++.+|+++.++|+|||||+++++|++++..|+|+|+|
T Consensus        28 kGgFA~cYe~~~~~-------tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLELC  100 (592)
T KOG0575|consen   28 KGGFARCYEARDLD-------TGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLELC  100 (592)
T ss_pred             cCcceEEEEEEEcC-------CCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEEec
Confidence            99999999999844       999999999965   34566788999999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +.++|..+++       .+.+++|..+..++.||+.||.|||   +.+|+|||||..|+|++++.++||+|||+|..+..
T Consensus       101 ~~~sL~el~K-------rrk~ltEpEary~l~QIv~GlkYLH---~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~  170 (592)
T KOG0575|consen  101 HRGSLMELLK-------RRKPLTEPEARYFLRQIVEGLKYLH---SLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEY  170 (592)
T ss_pred             CCccHHHHHH-------hcCCCCcHHHHHHHHHHHHHHHHHH---hcCceecccchhheeecCcCcEEecccceeeeecC
Confidence            9999999993       5678999999999999999999999   99999999999999999999999999999999975


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ++. ...+.+||+.|.+||+..++           ||+  .|+ |+  |+++...+.+.+.......+..|.  ..+...
T Consensus       171 ~~E-rk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~--PPFetk~vkety~~Ik~~~Y~~P~--~ls~~A  245 (592)
T KOG0575|consen  171 DGE-RKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGR--PPFETKTVKETYNKIKLNEYSMPS--HLSAEA  245 (592)
T ss_pred             ccc-ccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCC--CCcccchHHHHHHHHHhcCccccc--ccCHHH
Confidence            532 34568999999999999877           888  555 64  466777888888888888887776  788899


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+||.+.|+.||.+|| +++|+..
T Consensus       246 ~dLI~~lL~~~P~~Rpsl~~vL~h  269 (592)
T KOG0575|consen  246 KDLIRKLLRPNPSERPSLDEVLDH  269 (592)
T ss_pred             HHHHHHHhcCCcccCCCHHHHhcC
Confidence            9999999999999999 9998853

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.1e-41  Score=279.35  Aligned_cols=227  Identities=18%  Similarity=0.222  Sum_probs=188.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-------chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-------RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv  110 (292)
                      +|+||.|-+|.-++       +++.||||+++....       .......+|+++|++|+|||||+++++|..++..|||
T Consensus       182 sGafg~Vkla~e~~-------tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~YmV  254 (475)
T KOG0615|consen  182 SGAFGLVKLAYEKK-------TGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSSYMV  254 (475)
T ss_pred             CCceeEEEEEEEcc-------cCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCceEEE
Confidence            99999999999887       999999999975311       1223467999999999999999999999999999999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC---CceEEeecc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE---NVAKLFDFS  187 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~---~~~kl~Dfg  187 (292)
                      |||++||.|.+++-       ..+.+.+..-..++.|++.|+.|||   +.||+||||||+|||++.+   ..+||+|||
T Consensus       255 lE~v~GGeLfd~vv-------~nk~l~ed~~K~~f~Qll~avkYLH---~~GI~HRDiKPeNILl~~~~e~~llKItDFG  324 (475)
T KOG0615|consen  255 LEYVEGGELFDKVV-------ANKYLREDLGKLLFKQLLTAVKYLH---SQGIIHRDIKPENILLSNDAEDCLLKITDFG  324 (475)
T ss_pred             EEEecCccHHHHHH-------hccccccchhHHHHHHHHHHHHHHH---HcCcccccCCcceEEeccCCcceEEEecccc
Confidence            99999999999993       4556777777889999999999999   9999999999999999866   789999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccCCC--------------CeE-EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNEDD--------------GYV-VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~--------------Gvi-el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      +|+....  .....+++||+.|.+||+....              ||+ .+. ...+||.+......+.++...+.+...
T Consensus       325 lAK~~g~--~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~  402 (475)
T KOG0615|consen  325 LAKVSGE--GSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFG  402 (475)
T ss_pred             hhhcccc--ceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCccccc
Confidence            9998864  3345678999999888877543              888 544 666777776655555566666666554


Q ss_pred             C--chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          252 G--NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       252 ~--~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +  +.+...+..+||.++|..||++|| ++|+++.
T Consensus       403 p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~h  437 (475)
T KOG0615|consen  403 PLQWDRISEEALDLINWMLVVDPENRPSADEALNH  437 (475)
T ss_pred             ChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcC
Confidence            2  356788899999999999999999 9998864

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.4e-40  Score=266.01  Aligned_cols=237  Identities=19%  Similarity=0.249  Sum_probs=195.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC--CCcchHHHHHHHHHHHHhcCCCCccceee-eeecCCc-ceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE--SKPRTYDCCINNIVYASQMIHRCIFKLIG-CCLETQI-PILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~~~~-~~~~~~~-~~lv~e~  113 (292)
                      .|+||.||++....       +|..||.|.++-  .+....+.+..|+.+|++|+|||||++++ .+..+++ +++||||
T Consensus        29 ~GsFg~vykv~~~~-------~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~  101 (375)
T KOG0591|consen   29 RGSFGEVYKVQCLL-------DGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMEL  101 (375)
T ss_pred             CCcchheEEeeecc-------CcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHh
Confidence            89999999999876       999999999863  23344567999999999999999999999 4445555 8999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-CCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF-PRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~-~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |..|+|.+.++...   .+...+++..+++++.|++.||.++|+.. ...|+||||||.||+++.+|.+||+|||+++.+
T Consensus       102 c~~GDLsqmIk~~K---~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l  178 (375)
T KOG0591|consen  102 CDAGDLSQMIKHFK---KQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFL  178 (375)
T ss_pred             hcccCHHHHHHHHH---hccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHh
Confidence            99999999997554   46788999999999999999999999521 234999999999999999999999999999988


Q ss_pred             CCCCccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          193 PEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .+. ...+.+.+||+.||+|+....+           ||+  ||..-.+||... ++.++....-.+++++.+....+.+
T Consensus       179 ~s~-~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~-n~~~L~~KI~qgd~~~~p~~~YS~~  256 (375)
T KOG0591|consen  179 SSK-TTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD-NLLSLCKKIEQGDYPPLPDEHYSTD  256 (375)
T ss_pred             cch-hHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc-cHHHHHHHHHcCCCCCCcHHHhhhH
Confidence            653 4556778999999888765443           888  888656666554 7777777767777765544577899


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      +.+||..|+..||++|| ...++..+..
T Consensus       257 l~~li~~ci~vd~~~RP~t~~~v~di~~  284 (375)
T KOG0591|consen  257 LRELINMCIAVDPEQRPDTVPYVQDIQS  284 (375)
T ss_pred             HHHHHHHHccCCcccCCCcchHHHHHHH
Confidence            99999999999999999 8777766543

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-39  Score=292.12  Aligned_cols=261  Identities=21%  Similarity=0.244  Sum_probs=203.5

Q ss_pred             cccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeee
Q 044211           25 SFCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCL  102 (292)
Q Consensus        25 ~~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~  102 (292)
                      .|+..+++..... +|.||.||+|.....-+  ..+.+-||||.++..... ...+|.+|++++..++|||||+++|+|.
T Consensus       482 ~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p--~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~  559 (774)
T KOG1026|consen  482 EIPRSDIVFKEELGEGAFGKVFLAEAYGLLP--GQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCR  559 (774)
T ss_pred             EechhheeehhhhcCchhhhhhhhhccCCCC--CccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEc
Confidence            4444444444443 99999999998642111  114567999999987655 5578999999999999999999999999


Q ss_pred             cCCcceEEEeccCCCChhHHhhhhCCCC------C-CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe
Q 044211          103 ETQIPILVFEYINCGSLADRIRIHHTPQ------P-QHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF  175 (292)
Q Consensus       103 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~------~-~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili  175 (292)
                      .++.++||+||+..|+|.+|++.+....      + .+.+++..+.+.|+.|||.||.||-   ++.++||||..+|+||
T Consensus       560 ~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs---~~~FVHRDLATRNCLV  636 (774)
T KOG1026|consen  560 EGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLS---SHHFVHRDLATRNCLV  636 (774)
T ss_pred             cCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCcccccchhhhhcee
Confidence            9999999999999999999997654221      1 1456999999999999999999999   9999999999999999


Q ss_pred             cCCCceEEeecccccccCCCCccchh-hhhccccc------ccccccCCC-----CeE--EEccchhhhhhccchhhhcc
Q 044211          176 NEENVAKLFDFSFSISIPEGETHISE-LLSGLRAF------DLARLNEDD-----GYV--VLLDHIKKYFEEDRLNEIID  241 (292)
Q Consensus       176 ~~~~~~kl~Dfg~a~~~~~~~~~~~~-~~~g~~~y------~~~~~~~~~-----Gvi--el~~~~~~~~~~~~~~~~~~  241 (292)
                      .++..+||+|||+++.+.+.+++... ...-..+|      +.+.|+.++     ||+  |++.....++....-.+.++
T Consensus       637 ge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe  716 (774)
T KOG1026|consen  637 GENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIE  716 (774)
T ss_pred             ccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHH
Confidence            99999999999999988766655432 33345566      455677777     999  99922223333333344444


Q ss_pred             cccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          242 PLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      ....+.. .+.+..||..+++||..||+.+|.+|| |+||-.+|+...++.
T Consensus       717 ~i~~g~l-L~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s  766 (774)
T KOG1026|consen  717 CIRAGQL-LSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQAS  766 (774)
T ss_pred             HHHcCCc-ccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcC
Confidence            4333333 444469999999999999999999999 999999999987654

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-39  Score=269.04  Aligned_cols=222  Identities=22%  Similarity=0.334  Sum_probs=174.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|+||+||+|+++.       ++..||||.+.+.  .....+-+..|+.+|+.++|||||.+++++..++.+|+|||||+
T Consensus        20 ~GsfavVykg~h~~-------~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVMEyC~   92 (429)
T KOG0595|consen   20 SGSFAVVYKGRHKK-------SGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVMEYCN   92 (429)
T ss_pred             CcceEEEEEeEecc-------CCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEEeCC
Confidence            89999999999987       8999999999766  44455668899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC------CceEEeecccc
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE------NVAKLFDFSFS  189 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~------~~~kl~Dfg~a  189 (292)
                      +|+|.++++       ..+.+++..+..++.|+|.||++||   .++|+||||||.|||++.+      -.+||+|||+|
T Consensus        93 gGDLs~yi~-------~~~~l~e~t~r~Fm~QLA~alq~L~---~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfA  162 (429)
T KOG0595|consen   93 GGDLSDYIR-------RRGRLPEATARHFMQQLASALQFLH---ENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFA  162 (429)
T ss_pred             CCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCcceEEeccCCCCCCCceEEecccchh
Confidence            999999994       4457999999999999999999999   9999999999999999865      46999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC-Cch
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS-GNQ  254 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  254 (292)
                      +.+.+...  ....+|++-||+||+-.      |.     |++  +++ |+. |+.. ....++....-.+....+ .+.
T Consensus       163 R~L~~~~~--a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~-Pf~a-~t~~eL~~~~~k~~~~~~~~~~  238 (429)
T KOG0595|consen  163 RFLQPGSM--AETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKP-PFDA-ETPKELLLYIKKGNEIVPVLPA  238 (429)
T ss_pred             hhCCchhH--HHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCC-Cccc-cCHHHHHHHHhccccccCchhh
Confidence            99975433  56789999999887763      33     888  788 644 3332 222333222111111111 112


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDV  280 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el  280 (292)
                      .....+.+++..-++.+|.+|- +.+.
T Consensus       239 ~~s~~~~~Ll~~ll~~~~~~~~~~~~~  265 (429)
T KOG0595|consen  239 ELSNPLRELLISLLQRNPKDRISFEDF  265 (429)
T ss_pred             hccCchhhhhhHHHhcCccccCchHHh
Confidence            3455566788888888888887 5443

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=1.7e-38  Score=256.36  Aligned_cols=227  Identities=21%  Similarity=0.257  Sum_probs=174.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+++.+.       +|+.||||.+...  ++.-.+-.++|+.+|++|.|+|+|.++++|..+..+++|+|||+
T Consensus        12 EGSYGvV~KCrnk~-------TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~d   84 (396)
T KOG0593|consen   12 EGSYGVVMKCRNKD-------TGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYCD   84 (396)
T ss_pred             cCcceEEEEeccCC-------cccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeeecc
Confidence            89999999999987       9999999998654  33334557899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      . ++.+-+.      ..+..++...+..++.|++.|+.|+|   +++++||||||+||||+.+|.+||||||+|+.+..+
T Consensus        85 h-TvL~eLe------~~p~G~~~~~vk~~l~Q~l~ai~~cH---k~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~p  154 (396)
T KOG0593|consen   85 H-TVLHELE------RYPNGVPSELVKKYLYQLLKAIHFCH---KNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAP  154 (396)
T ss_pred             h-HHHHHHH------hccCCCCHHHHHHHHHHHHHHhhhhh---hcCeecccCChhheEEecCCcEEeccchhhHhhcCC
Confidence            7 5555553      34567889999999999999999999   999999999999999999999999999999988743


Q ss_pred             CccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhc-------------------c
Q 044211          196 ETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEII-------------------D  241 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~-------------------~  241 (292)
                      . ......+.|.+|.+|+....-            ||+  ||+ |.+.. +....+..++                   .
T Consensus       155 g-d~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~-PG~SDiDQLy~I~ktLG~L~prhq~iF~~N  232 (396)
T KOG0593|consen  155 G-DNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLW-PGRSDIDQLYLIRKTLGNLIPRHQSIFSSN  232 (396)
T ss_pred             c-chhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCC-CCcchHHHHHHHHHHHcccCHHHHHHhccC
Confidence            2 223556788999888776542            888  998 76511 1111111110                   0


Q ss_pred             cccccC----CCCCCc-----hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 PLIMGD----RSCSGN-----QQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 ~~~~~~----~~~~~~-----~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+.|.    +..+.+     +..+..+.+++.+||+.||++|+ .++++..
T Consensus       233 ~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H  284 (396)
T KOG0593|consen  233 PFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHH  284 (396)
T ss_pred             CceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhcC
Confidence            111111    111111     24466788999999999999999 9988753

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-38  Score=274.75  Aligned_cols=227  Identities=19%  Similarity=0.291  Sum_probs=200.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|..|.||.+....       +++.||||.+........+-+++|+.+|+..+|+|||.++..|.-.+.+|.||||+++|
T Consensus       283 qgaSG~vy~A~~~~-------~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~gg  355 (550)
T KOG0578|consen  283 QGATGGVYVARKIS-------TKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGG  355 (550)
T ss_pred             cccccceeeeeecc-------CCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCC
Confidence            99999999998876       89999999998765555566899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+.+        ....+++.++..++.+++.||+|||   ..+|+|||||.+|||++.+|.+||+|||++..+.....
T Consensus       356 sLTDvV--------t~~~~~E~qIA~Icre~l~aL~fLH---~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~  424 (550)
T KOG0578|consen  356 SLTDVV--------TKTRMTEGQIAAICREILQGLKFLH---ARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS  424 (550)
T ss_pred             chhhhh--------hcccccHHHHHHHHHHHHHHHHHHH---hcceeeeccccceeEeccCCcEEEeeeeeeeccccccC
Confidence            999999        3455999999999999999999999   99999999999999999999999999999999876654


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLI  264 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  264 (292)
                       .....+||+.|++||+....           |++  ||+-+.+||+.+..+..++-....+.+....+...++.+.+++
T Consensus       425 -KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL  503 (550)
T KOG0578|consen  425 -KRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFL  503 (550)
T ss_pred             -ccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHH
Confidence             45668899999999887763           888  9995556777777777776666667766666678899999999


Q ss_pred             hHhcCCCCCCCC-HHHHHHH
Q 044211          265 FECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       265 ~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+||+.||++|| +.||++.
T Consensus       504 ~~cL~~dv~~RasA~eLL~H  523 (550)
T KOG0578|consen  504 DRCLVVDVEQRASAKELLEH  523 (550)
T ss_pred             HHHhhcchhcCCCHHHHhcC
Confidence            999999999999 9999874

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3e-37  Score=259.05  Aligned_cols=230  Identities=17%  Similarity=0.197  Sum_probs=181.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCC--cceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ--IPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~--~~~lv~e~~~  115 (292)
                      +|+||.||.+....       +|...|||.+........+.+.+|+.+|++++|||||+++|......  .+++.|||++
T Consensus        27 ~Gs~G~V~l~~~~~-------~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~   99 (313)
T KOG0198|consen   27 RGSFGSVYLATNKK-------TGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAP   99 (313)
T ss_pred             CccceEEEEEEecC-------CCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccC
Confidence            89999999999975       68999999987654444677999999999999999999999855544  5889999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-CCceEEeecccccccCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-ENVAKLFDFSFSISIPE  194 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~a~~~~~  194 (292)
                      +|||.++++.++     + .+++..+.++..||+.||.|||   +++++|+||||+|||++. ++.+||+|||++.....
T Consensus       100 ~GsL~~~~~~~g-----~-~l~E~~v~~ytr~iL~GL~ylH---s~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~  170 (313)
T KOG0198|consen  100 GGSLSDLIKRYG-----G-KLPEPLVRRYTRQILEGLAYLH---SKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLES  170 (313)
T ss_pred             CCcHHHHHHHcC-----C-CCCHHHHHHHHHHHHHHHHHHH---hCCEeccCcccceEEEeCCCCeEEeccCcccccccc
Confidence            999999995332     2 6999999999999999999999   999999999999999999 79999999999987764


Q ss_pred             --CCccchhhhhcccccccccccC-------CC-----CeE--EEccchhhhhh-ccchhhhcccccccCCCCCCchHHH
Q 044211          195 --GETHISELLSGLRAFDLARLNE-------DD-----GYV--VLLDHIKKYFE-EDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       195 --~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                        ..........||+.|++|++..       .+     ||+  ||++...|+.. .......+........|.. +...+
T Consensus       171 ~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~~~P~i-p~~ls  249 (313)
T KOG0198|consen  171 KGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGREDSLPEI-PDSLS  249 (313)
T ss_pred             ccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccCCCCCC-CcccC
Confidence              2222244678999998888776       12     888  99933434333 2222222232223322221 24678


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      ....+++.+|++.||+.|| +.+++..-
T Consensus       250 ~~a~~Fl~~C~~~~p~~Rpta~eLL~hp  277 (313)
T KOG0198|consen  250 DEAKDFLRKCFKRDPEKRPTAEELLEHP  277 (313)
T ss_pred             HHHHHHHHHHhhcCcccCcCHHHHhhCh
Confidence            8999999999999999999 99998764

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-38  Score=292.70  Aligned_cols=247  Identities=19%  Similarity=0.303  Sum_probs=199.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|.||.||+|.+..+  .+......||+|.++.. +.+...+|++|..+|++++|||||+++|++.+....++++|||++
T Consensus       702 ~G~FG~VY~g~~~~~--~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~leyM~g  779 (1025)
T KOG1095|consen  702 KGAFGEVYEGTYSDV--PGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLEYMEG  779 (1025)
T ss_pred             cccccceEEEEEecC--CCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEehhccc
Confidence            999999999998531  11111346999999875 556678899999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|..+|+..+...-+...++..+.+.++.|||+|+.||+   .+++|||||.++|+|++....+||+|||+|+.+...+
T Consensus       780 GDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe---~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~  856 (1025)
T KOG1095|consen  780 GDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLE---SKHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKD  856 (1025)
T ss_pred             CcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHH---hCCCcCcchhhhheeecccCcEEEcccchhHhhhhch
Confidence            9999999876655556888999999999999999999999   9999999999999999999999999999999776655


Q ss_pred             ccchhhh-hcccccccc------cccCCC-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELL-SGLRAFDLA------RLNEDD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~-~g~~~y~~~------~~~~~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      +...... .-...||+|      .++.|+     ||+  |++....+++.+..-.+++...+.+. ..++|..|+..+++
T Consensus       857 yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~gg-RL~~P~~CP~~ly~  935 (1025)
T KOG1095|consen  857 YYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGG-RLDPPSYCPEKLYQ  935 (1025)
T ss_pred             heeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCC-ccCCCCCCChHHHH
Confidence            5543332 223566555      455566     999  99944433444444445555445555 44455799999999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ||.+||+.+|++|| |..|++.+..+.+.
T Consensus       936 lM~~CW~~~pe~RP~F~~i~~q~~~i~~~  964 (1025)
T KOG1095|consen  936 LMLQCWKHDPEDRPSFRTIVEQDPAISNA  964 (1025)
T ss_pred             HHHHHccCChhhCccHHHHHhhhhhhhhh
Confidence            99999999999999 99999999887654

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.8e-37  Score=265.56  Aligned_cols=228  Identities=16%  Similarity=0.111  Sum_probs=180.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv~e~  113 (292)
                      +|.||.||+|....       +|+.||+|.+...  ...+..-..+|+.+|++|+||||+++.+.....  ..+|||+||
T Consensus       127 eGTyg~VYkAr~~~-------tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeY  199 (560)
T KOG0600|consen  127 EGTYGQVYKARDLE-------TGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEY  199 (560)
T ss_pred             CcchhheeEeeecc-------cCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEec
Confidence            99999999999876       9999999998654  466778889999999999999999999999876  689999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      |++ +|.-++      ....-.+++.++..++.|++.||.|||   .++|+|||||.+||||+.+|.+||+|||+|+.+.
T Consensus       200 Mdh-DL~GLl------~~p~vkft~~qIKc~mkQLl~Gl~~cH---~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~  269 (560)
T KOG0600|consen  200 MDH-DLSGLL------SSPGVKFTEPQIKCYMKQLLEGLEYCH---SRGVLHRDIKGSNILIDNNGVLKIADFGLARFYT  269 (560)
T ss_pred             ccc-hhhhhh------cCCCcccChHHHHHHHHHHHHHHHHHh---hcCeeeccccccceEEcCCCCEEeccccceeecc
Confidence            997 999888      356778999999999999999999999   9999999999999999999999999999999887


Q ss_pred             CCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhh------------ccch-hhhcc----
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFE------------EDRL-NEIID----  241 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~------------~~~~-~~~~~----  241 (292)
                      ..........+-|.+|.+||..--.            |||  ||+ |++...-.            .+.. .+.+.    
T Consensus       270 ~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kL  349 (560)
T KOG0600|consen  270 PSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKL  349 (560)
T ss_pred             CCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccC
Confidence            7766656677789999777665433            888  999 87610000            0000 00000    


Q ss_pred             ---cccccCCCCCC-----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 ---PLIMGDRSCSG-----NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 ---~~~~~~~~~~~-----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                         ..+....+...     ....+....+|+..+|..||++|. +.+.+.
T Consensus       350 P~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  350 PHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             CcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence               00111111000     013466788999999999999999 888764

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=4.6e-37  Score=261.15  Aligned_cols=244  Identities=16%  Similarity=0.247  Sum_probs=189.0

Q ss_pred             CCccccccHHHHHHHhhC---ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcch---HHHHHHHHHHHHhcCCCC
Q 044211           20 YNPIRSFCAEELKTTHNA---IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRT---YDCCINNIVYASQMIHRC   93 (292)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~---~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~e~~~l~~l~h~n   93 (292)
                      ......++.+++......   +|+++.||+|.+         +++.||+|.++......   .+.+.+|+.++++++|||
T Consensus         9 ~~~~~~i~~~~i~~~~~~~i~~g~~~~v~~~~~---------~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n   79 (283)
T PHA02988          9 INDIKCIESDDIDKYTSVLIKENDQNSIYKGIF---------NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNN   79 (283)
T ss_pred             cCcceecCHHHcCCCCCeEEeeCCceEEEEEEE---------CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCC
Confidence            455666777777555433   999999999999         89999999997653322   467889999999999999


Q ss_pred             ccceeeeeec----CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCcccCCC
Q 044211           94 IFKLIGCCLE----TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP-RPVIFRDF  168 (292)
Q Consensus        94 iv~~~~~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-~~i~H~dl  168 (292)
                      |++++|++..    ....++||||+++|+|.+++.       ....+++.....++.+++.||.|||   . .+++||||
T Consensus        80 Iv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~-------~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~Hrdl  149 (283)
T PHA02988         80 ILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLD-------KEKDLSFKTKLDMAIDCCKGLYNLY---KYTNKPYKNL  149 (283)
T ss_pred             EEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHh-------hCCCCChhHHHHHHHHHHHHHHHHH---hcCCCCCCcC
Confidence            9999999876    346789999999999999993       3456888999999999999999999   5 48889999


Q ss_pred             CCCceEecCCCceEEeecccccccCCCCccchhhhhcccccccccccC--------CC-----CeE--EEc-cchhhhhh
Q 044211          169 KLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNE--------DD-----GYV--VLL-DHIKKYFE  232 (292)
Q Consensus       169 k~~nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~--------~~-----Gvi--el~-~~~~~~~~  232 (292)
                      ||+||++++++.+||+|||++.......    ....|+..|++|++..        ++     |++  ||+ |+. |+..
T Consensus       150 kp~nill~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~-Pf~~  224 (283)
T PHA02988        150 TSVSFLVTENYKLKIICHGLEKILSSPP----FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKI-PFEN  224 (283)
T ss_pred             ChhhEEECCCCcEEEcccchHhhhcccc----ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCC-CCCC
Confidence            9999999999999999999998654322    2235677787666543        23     988  888 543 4432


Q ss_pred             ccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          233 EDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                       ....+............+.+..++..+.+++.+||+.||++|| +.++++.|+.+.
T Consensus       225 -~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        225 -LTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             -CCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence             2333333333222222222236788999999999999999999 999999999875

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=265.71  Aligned_cols=238  Identities=20%  Similarity=0.284  Sum_probs=185.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC---CCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE---SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~---~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..-  .+. ...+||+|..+.   .......+|++|.++|++++|||||+++|++.....+++|||+|
T Consensus       167 eGaFGeV~~G~l~~~--~~~-~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmEl~  243 (474)
T KOG0194|consen  167 EGAFGEVFKGKLKLK--NGF-KVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVMELC  243 (474)
T ss_pred             cccccEEEEEEEEec--CCc-eeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEEec
Confidence            999999999998630  000 112389999885   34566788999999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +||+|.++++      .....++..+++.++.+.|.||.|||   ..+++||||.++|+|++.++.+||+|||+++.-..
T Consensus       244 ~gGsL~~~L~------k~~~~v~~~ek~~~~~~AA~Gl~YLh---~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~  314 (474)
T KOG0194|consen  244 NGGSLDDYLK------KNKKSLPTLEKLRFCYDAARGLEYLH---SKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQ  314 (474)
T ss_pred             CCCcHHHHHH------hCCCCCCHHHHHHHHHHHHhHHHHHH---HCCCcchhHhHHHheecCCCeEEeCccccccCCcc
Confidence            9999999994      22346999999999999999999999   99999999999999999999999999999876531


Q ss_pred             CCccchhhhhcccccccc------cccCCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLA------RLNEDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~------~~~~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      -... .....-...|++|      .++.++     ||+  |++ ....|+... ...++........++.+.+...+..+
T Consensus       315 ~~~~-~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~-~~~~v~~kI~~~~~r~~~~~~~p~~~  392 (474)
T KOG0194|consen  315 YVMK-KFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGM-KNYEVKAKIVKNGYRMPIPSKTPKEL  392 (474)
T ss_pred             eeec-cccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCC-CHHHHHHHHHhcCccCCCCCCCHHHH
Confidence            1111 1011223455444      455555     999  999 223355443 44444445545566565556889999


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      ..++.+||..||++|| |.++.+.|+.+..
T Consensus       393 ~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~  422 (474)
T KOG0194|consen  393 AKVMKQCWKKDPEDRPTMSTIKKKLEALEK  422 (474)
T ss_pred             HHHHHHhccCChhhccCHHHHHHHHHHHHh
Confidence            9999999999999999 9999999998764

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=9.7e-37  Score=242.04  Aligned_cols=227  Identities=16%  Similarity=0.152  Sum_probs=178.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|.||+||+|....       +|+.||||.++..  ........++|+..|+.++|+||+.++++|.....+.+|+||++
T Consensus        12 EG~~gvVyka~d~~-------t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm~   84 (318)
T KOG0659|consen   12 EGTYGVVYKARDTE-------TGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFMP   84 (318)
T ss_pred             CcceEEEEEEEecC-------CCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEecc
Confidence            89999999999987       9999999999754  22234568999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      . +|+..++      ...-.++..++..|+.++.+|++|||   .+.|+||||||.|+||+++|.+||+|||+|+.+.+.
T Consensus        85 t-dLe~vIk------d~~i~l~pa~iK~y~~m~LkGl~y~H---~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p  154 (318)
T KOG0659|consen   85 T-DLEVVIK------DKNIILSPADIKSYMLMTLKGLAYCH---SKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSP  154 (318)
T ss_pred             c-cHHHHhc------ccccccCHHHHHHHHHHHHHHHHHHH---hhhhhcccCCccceEEcCCCcEEeecccchhccCCC
Confidence            5 9999994      55678999999999999999999999   999999999999999999999999999999988754


Q ss_pred             CccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccch------------------------
Q 044211          196 ETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRL------------------------  236 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~------------------------  236 (292)
                      ..... ..+-|.+|.+||....+            |||  ||+ +.+ -+..+..+                        
T Consensus       155 ~~~~~-~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P-~fpG~sDidQL~~If~~LGTP~~~~WP~~~~l  232 (318)
T KOG0659|consen  155 NRIQT-HQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVP-FFPGDSDIDQLSKIFRALGTPTPDQWPEMTSL  232 (318)
T ss_pred             Ccccc-cceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCC-CCCCCchHHHHHHHHHHcCCCCcccCcccccc
Confidence            43322 23678888888865544            888  888 554 11111111                        


Q ss_pred             hhhcccccccCCCCC-CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          237 NEIIDPLIMGDRSCS-GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       237 ~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+..+-...+.++.. -.+.+..+..+|+.++|.+||.+|+ ++|++++
T Consensus       233 pdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  233 PDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             ccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence            111110101111000 1135677889999999999999999 9998864

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-37  Score=264.58  Aligned_cols=227  Identities=17%  Similarity=0.197  Sum_probs=177.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHH-HHHHHHHHHhcC-CCCccceeeeeecCC-cceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDC-CINNIVYASQMI-HRCIFKLIGCCLETQ-IPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~-~~~e~~~l~~l~-h~niv~~~~~~~~~~-~~~lv~e~~  114 (292)
                      .|+||.||+|+...       ++..||||.++..-....+. -++|+..|++|+ ||||+++.+++.+.+ .+++|||||
T Consensus        20 DGTfGsV~la~~~~-------~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE~M   92 (538)
T KOG0661|consen   20 DGTFGSVYLAKSKE-------TGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEFM   92 (538)
T ss_pred             CCcceeEEEeeecC-------CCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHhh
Confidence            89999999999876       89999999998764333222 378999999998 999999999999887 899999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +. +|.++++      ..+..+++..+..|+.||++||+|+|   .+|++|||+||+||||..+..+||+|||+|+.+.+
T Consensus        93 d~-NLYqLmK------~R~r~fse~~irnim~QilqGL~hiH---k~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~S  162 (538)
T KOG0661|consen   93 DC-NLYQLMK------DRNRLFSESDIRNIMYQILQGLAHIH---KHGFFHRDLKPENILISGNDVIKIADFGLAREVRS  162 (538)
T ss_pred             hh-hHHHHHh------hcCCcCCHHHHHHHHHHHHHHHHHHH---hcCcccccCChhheEecccceeEeccccccccccc
Confidence            95 9999995      23678999999999999999999999   99999999999999999888999999999998864


Q ss_pred             CCccchhhhhcccccccccccCCC------------CeE--EEccchhhhhhccchhhhcc-------------------
Q 044211          195 GETHISELLSGLRAFDLARLNEDD------------GYV--VLLDHIKKYFEEDRLNEIID-------------------  241 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~~~~~~~~~~~~~~~~~~-------------------  241 (292)
                        .......+.|.+|.+||+.-.+            |+|  |+..-++-|......++++.                   
T Consensus       163 --kpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~L  240 (538)
T KOG0661|consen  163 --KPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNL  240 (538)
T ss_pred             --CCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHH
Confidence              3345667889999888887655            777  66633322222222221111                   


Q ss_pred             -cccccCCCC----C---CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 -PLIMGDRSC----S---GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 -~~~~~~~~~----~---~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                       ..+.-..|.    +   ..+.++.+..++|.+|++.||++|| +.++++.
T Consensus       241 a~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  241 ASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             HHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence             001100000    0   0134788899999999999999999 9998864

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=9.8e-37  Score=272.37  Aligned_cols=238  Identities=17%  Similarity=0.251  Sum_probs=192.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|.||.|++|.++.-.+    ....||||.++....+ ....|+.|..+|-+++||||+++-|+.......++|.|||++
T Consensus       639 aGEFGEVc~GrLk~pgk----re~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEyMEN  714 (996)
T KOG0196|consen  639 AGEFGEVCSGRLKLPGK----REITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEYMEN  714 (996)
T ss_pred             cccccceecccccCCCC----cceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhhhhC
Confidence            89999999999965111    3457999999976443 456799999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|+.|++.      ..+.+..-++..++.+||.||.||-   +.+.+||||.++|||++.+..+|++|||+++.++++.
T Consensus       715 GsLDsFLR~------~DGqftviQLVgMLrGIAsGMkYLs---dm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~  785 (996)
T KOG0196|consen  715 GSLDSFLRQ------NDGQFTVIQLVGMLRGIASGMKYLS---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  785 (996)
T ss_pred             CcHHHHHhh------cCCceEeehHHHHHHHHHHHhHHHh---hcCchhhhhhhhheeeccceEEEeccccceeecccCC
Confidence            999999953      3456999999999999999999999   9999999999999999999999999999999886655


Q ss_pred             ccchhhhhc--cccccccccc------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 THISELLSG--LRAFDLARLN------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~~~~~~~g--~~~y~~~~~~------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ....+...|  ..+|.+||..      ..+     ||+  |++ -...|+|+..+ ++.+. .+...+..|+|.+||..|
T Consensus       786 ~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSN-QdVIk-aIe~gyRLPpPmDCP~aL  863 (996)
T KOG0196|consen  786 EAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSN-QDVIK-AIEQGYRLPPPMDCPAAL  863 (996)
T ss_pred             CccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccch-HHHHH-HHHhccCCCCCCCCcHHH
Confidence            333333333  3566555433      333     999  888 33346665433 33333 345555555567999999


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+||..||++|-++|| |.+|+..|+++.++
T Consensus       864 ~qLMldCWqkdR~~RP~F~qiV~~lDklIrn  894 (996)
T KOG0196|consen  864 YQLMLDCWQKDRNRRPKFAQIVSTLDKLIRN  894 (996)
T ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHHHHhcC
Confidence            9999999999999999 99999999998765

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-36  Score=263.50  Aligned_cols=231  Identities=20%  Similarity=0.283  Sum_probs=187.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+|.|.          -.||||+++...  ++..+.|.+|+..+++-+|.||+-+.|+|..+.. .+|+.+|.
T Consensus       402 sGsFGtV~Rg~wh----------GdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~-AIiTqwCe  470 (678)
T KOG0193|consen  402 SGSFGTVYRGRWH----------GDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL-AIITQWCE  470 (678)
T ss_pred             cccccceeecccc----------cceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce-eeeehhcc
Confidence            9999999999995          369999998653  3466789999999999999999999999988766 99999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC-
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE-  194 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~-  194 (292)
                      |-||..++.      .....++....+.|+.|||.||.|||   .++|||+|||..||++.+++++||+|||++..-.- 
T Consensus       471 GsSLY~hlH------v~etkfdm~~~idIAqQiaqGM~YLH---AK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w  541 (678)
T KOG0193|consen  471 GSSLYTHLH------VQETKFDMNTTIDIAQQIAQGMDYLH---AKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRW  541 (678)
T ss_pred             Cchhhhhcc------chhhhhhHHHHHHHHHHHHHhhhhhh---hhhhhhhhccccceEEccCCcEEEecccceeeeeee
Confidence            999999992      34678999999999999999999999   99999999999999999999999999999853210 


Q ss_pred             CCccchhhhhcccccccccccC---------CC-----CeE--EEccchhhhhhccchhhhcccccccCCCC---CCchH
Q 044211          195 GETHISELLSGLRAFDLARLNE---------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSC---SGNQQ  255 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  255 (292)
                      ..........|+.-|++||+..         .+     |+|  ||+...+|+. ......++-..-.|...+   -...+
T Consensus       542 ~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPys-i~~~dqIifmVGrG~l~pd~s~~~s~  620 (678)
T KOG0193|consen  542 SGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYS-IQNRDQIIFMVGRGYLMPDLSKIRSN  620 (678)
T ss_pred             ccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcC-CCChhheEEEecccccCccchhhhcc
Confidence            1222234455677777776543         33     999  9997677776 555666555444442211   12358


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      |+.++.+|+..||.++|++|| +.+|+..|+++..
T Consensus       621 ~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~  655 (678)
T KOG0193|consen  621 CPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLP  655 (678)
T ss_pred             CHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence            899999999999999999999 9999999988765

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-36  Score=263.36  Aligned_cols=235  Identities=21%  Similarity=0.283  Sum_probs=193.9

Q ss_pred             cccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec
Q 044211           25 SFCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE  103 (292)
Q Consensus        25 ~~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~  103 (292)
                      ++.|+++.+.... .|+.|.||+|++         .++.||||+++..+.       .++..|++|+|+||+.|.|+|.+
T Consensus       120 eiPFe~IsELeWlGSGaQGAVF~Grl---------~netVAVKKV~elkE-------TdIKHLRkLkH~NII~FkGVCtq  183 (904)
T KOG4721|consen  120 EIPFEEISELEWLGSGAQGAVFLGRL---------HNETVAVKKVRELKE-------TDIKHLRKLKHPNIITFKGVCTQ  183 (904)
T ss_pred             cCCHHHhhhhhhhccCcccceeeeec---------cCceehhHHHhhhhh-------hhHHHHHhccCcceeeEeeeecC
Confidence            4555666555554 899999999999         789999999876532       46888999999999999999999


Q ss_pred             CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEE
Q 044211          104 TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKL  183 (292)
Q Consensus       104 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl  183 (292)
                      ..-++||||||..|-|..++       ..+.++.....+.|..+||.||+|||   .+.|||||||.-||||+.+..+||
T Consensus       184 sPcyCIiMEfCa~GqL~~VL-------ka~~~itp~llv~Wsk~IA~GM~YLH---~hKIIHRDLKSPNiLIs~~d~VKI  253 (904)
T KOG4721|consen  184 SPCYCIIMEFCAQGQLYEVL-------KAGRPITPSLLVDWSKGIAGGMNYLH---LHKIIHRDLKSPNILISYDDVVKI  253 (904)
T ss_pred             CceeEEeeeccccccHHHHH-------hccCccCHHHHHHHHHHhhhhhHHHH---HhhHhhhccCCCceEeeccceEEe
Confidence            99999999999999999999       46778999999999999999999999   999999999999999999999999


Q ss_pred             eecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCC
Q 044211          184 FDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       184 ~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      +|||.++.....  ...-.+.||+.||+|++..+-           |||  ||++...|+-....... +.-+-......
T Consensus       254 sDFGTS~e~~~~--STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAI-IwGVGsNsL~L  330 (904)
T KOG4721|consen  254 SDFGTSKELSDK--STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAI-IWGVGSNSLHL  330 (904)
T ss_pred             ccccchHhhhhh--hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchhee-EEeccCCcccc
Confidence            999999877543  334568899999999876544           988  99955556554433332 22222333344


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      +.+..|+..+.=|+.+||+..|..|| |.+|+..|+-..
T Consensus       331 pvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~HldIa~  369 (904)
T KOG4721|consen  331 PVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHLDIAS  369 (904)
T ss_pred             cCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHHhhcC
Confidence            44568999999999999999999999 999999997543

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-36  Score=250.97  Aligned_cols=230  Identities=17%  Similarity=0.228  Sum_probs=188.0

Q ss_pred             ccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeee
Q 044211           26 FCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCC  101 (292)
Q Consensus        26 ~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~  101 (292)
                      ...++++..... +|+||.|+.++...       +++.+|+|.+++.   .........+|..+|.+++||.||.++-.|
T Consensus        22 ~~~~dF~~lkviGkG~fGkV~~Vrk~d-------t~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysF   94 (357)
T KOG0598|consen   22 VGPDDFEILKVIGKGSFGKVFQVRKKD-------TGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSF   94 (357)
T ss_pred             CChhheeeeeeeeccCCceEEEEEEcc-------cCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEec
Confidence            444444444443 99999999999875       9999999999764   223456789999999999999999999999


Q ss_pred             ecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCce
Q 044211          102 LETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVA  181 (292)
Q Consensus       102 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~  181 (292)
                      .+...+|+|+||+.||.|...+       +....+++..+..++.+|+.||.|||   +.+|+||||||+|||++.+|.+
T Consensus        95 Qt~~kLylVld~~~GGeLf~hL-------~~eg~F~E~~arfYlaEi~lAL~~LH---~~gIiyRDlKPENILLd~~GHi  164 (357)
T KOG0598|consen   95 QTEEKLYLVLDYLNGGELFYHL-------QREGRFSEDRARFYLAEIVLALGYLH---SKGIIYRDLKPENILLDEQGHI  164 (357)
T ss_pred             ccCCeEEEEEeccCCccHHHHH-------HhcCCcchhHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHeeecCCCcE
Confidence            9999999999999999999999       45677999999999999999999999   9999999999999999999999


Q ss_pred             EEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccC
Q 044211          182 KLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD  247 (292)
Q Consensus       182 kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~  247 (292)
                      +|+|||+++.....+ .....++||+.|++||+....           |++  ||+ |++  ++...+....++..+.+.
T Consensus       165 ~LtDFgL~k~~~~~~-~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~p--PF~~~~~~~~~~~I~~~k  241 (357)
T KOG0598|consen  165 KLTDFGLCKEDLKDG-DATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKP--PFYAEDVKKMYDKILKGK  241 (357)
T ss_pred             EEeccccchhcccCC-CccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCC--CCcCccHHHHHHHHhcCc
Confidence            999999998664433 234558999999999887655           888  999 644  334445566666655555


Q ss_pred             CCCCCchHHHHHHHHHHhHhcCCCCCCCC
Q 044211          248 RSCSGNQQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       248 ~~~~~~~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                      .+.++ .-...+..+++.+.+..||++|-
T Consensus       242 ~~~~p-~~ls~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  242 LPLPP-GYLSEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             CCCCC-ccCCHHHHHHHHHHhccCHHHhc
Confidence            33332 23677899999999999999994

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-35  Score=251.14  Aligned_cols=229  Identities=19%  Similarity=0.244  Sum_probs=184.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcch-HHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRT-YDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|..++||+|....       .+..||||+++..+... .+.+.+|++.|+.++||||++++..|..+..+|+||.|+.+
T Consensus        36 ~G~sa~V~~A~c~p-------~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~  108 (516)
T KOG0582|consen   36 VGASAVVYLARCIP-------TNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPFMAG  108 (516)
T ss_pred             ccceeEeeeeeecc-------cCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehhhcC
Confidence            78889999999976       88999999998654433 58899999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ||+.+.++...     ...+++..+..|+.++++||.|||   ++|.||||+|+.||||+.+|.+||+|||.+..+....
T Consensus       109 GS~ldIik~~~-----~~Gl~E~~Ia~iLre~LkaL~YLH---~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G  180 (516)
T KOG0582|consen  109 GSLLDIIKTYY-----PDGLEEASIATILREVLKALDYLH---QNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSG  180 (516)
T ss_pred             CcHHHHHHHHc-----cccccHHHHHHHHHHHHHHHHHHH---hcCceecccccccEEEcCCCcEEEcCceeeeeecccC
Confidence            99999997654     344999999999999999999999   9999999999999999999999999999987665433


Q ss_pred             ccc---hhhhhcccccccccccC--------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC------
Q 044211          197 THI---SELLSGLRAFDLARLNE--------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS------  251 (292)
Q Consensus       197 ~~~---~~~~~g~~~y~~~~~~~--------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------  251 (292)
                      ...   ...+.|++.|++||+..        |+     |++  ||. |.. ||..-.... .+...+.+.+|.+      
T Consensus       181 ~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~a-Pf~k~pPmk-vLl~tLqn~pp~~~t~~~~  258 (516)
T KOG0582|consen  181 DRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHA-PFSKYPPMK-VLLLTLQNDPPTLLTSGLD  258 (516)
T ss_pred             ceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCC-CcccCChHH-HHHHHhcCCCCCcccccCC
Confidence            111   25678999999999832        22     888  999 644 443333322 2223344444311      


Q ss_pred             --CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          252 --GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       252 --~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                        +.......+.+++..||++||.+|| ++++++.
T Consensus       259 ~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh  293 (516)
T KOG0582|consen  259 KDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKH  293 (516)
T ss_pred             hHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhcc
Confidence              1123466789999999999999999 9999864

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=1.4e-35  Score=258.26  Aligned_cols=247  Identities=16%  Similarity=0.209  Sum_probs=178.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecCC-cceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQ-IPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~-~~~lv~e~~  114 (292)
                      +|+||.||+|.+....  ...++..||+|.+.... ......+.+|+.++..+ +||||+++++++...+ ..+++|||+
T Consensus        17 ~G~fg~Vy~~~~~~~~--~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~   94 (338)
T cd05102          17 HGAFGKVVEASAFGID--KKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEFC   94 (338)
T ss_pred             cCCcceEEEEEEeccC--CcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEEEecC
Confidence            8999999999752100  01145789999987543 23346789999999999 8999999999887644 578999999


Q ss_pred             CCCChhHHhhhhCCCC-------------------------------------------------------CCCCCCCHH
Q 044211          115 NCGSLADRIRIHHTPQ-------------------------------------------------------PQHEPLLLT  139 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~-------------------------------------------------------~~~~~l~~~  139 (292)
                      ++|+|.+++.......                                                       .....+++.
T Consensus        95 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  174 (338)
T cd05102          95 KYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTME  174 (338)
T ss_pred             CCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCCCCHH
Confidence            9999999996432100                                                       012457888


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCcc-chhhhhccccccccccc---
Q 044211          140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH-ISELLSGLRAFDLARLN---  215 (292)
Q Consensus       140 ~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~g~~~y~~~~~~---  215 (292)
                      .+..++.|++.||.|||   ..+++||||||+|||++.++.+||+|||++.....+... ......++..|++||..   
T Consensus       175 ~~~~~~~qi~~aL~~LH---~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  251 (338)
T cd05102         175 DLICYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDK  251 (338)
T ss_pred             HHHHHHHHHHHHHHHHH---HCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcC
Confidence            99999999999999999   899999999999999999999999999999866433221 12233456678777743   


Q ss_pred             ---CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          216 ---EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       216 ---~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                         .++     |++  ||+ ....|+...............+. ....+..+++.+.+|+.+||+.||++|| +.++++.
T Consensus       252 ~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~~  330 (338)
T cd05102         252 VYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGT-RMRAPENATPEIYRIMLACWQGDPKERPTFSALVEI  330 (338)
T ss_pred             CCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence               333     888  887 34444433221111111111111 1112235677899999999999999999 9999999


Q ss_pred             HHHhhhc
Q 044211          284 TQANVCS  290 (292)
Q Consensus       284 L~~l~~~  290 (292)
                      |+.+...
T Consensus       331 l~~~~~~  337 (338)
T cd05102         331 LGDLLQE  337 (338)
T ss_pred             HHHHHhc
Confidence            9997653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-35  Score=257.71  Aligned_cols=229  Identities=21%  Similarity=0.243  Sum_probs=186.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC----Cc-chHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES----KP-RTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~----~~-~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.|+.|.+..       ++..||+|+++..    .. ...+.+.+|+.++++++ ||||++++.++.....+++||
T Consensus        27 ~GsfgkV~~a~~~~-------t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~ivm   99 (370)
T KOG0583|consen   27 SGSFGKVKLAKHRL-------TGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKIYIVM   99 (370)
T ss_pred             CCCCeeEEEeeecc-------CCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeEEEEE
Confidence            99999999999876       8899999987653    12 22345678999999998 999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC-CceEEeeccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE-NVAKLFDFSFSI  190 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~-~~~kl~Dfg~a~  190 (292)
                      ||+.+|+|.+++.       ....+.+..+.+++.|++.|+.|||   +.+|+||||||+|||++.+ +++||+|||++.
T Consensus       100 Ey~~gGdL~~~i~-------~~g~l~E~~ar~~F~Qlisav~y~H---~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~  169 (370)
T KOG0583|consen  100 EYCSGGDLFDYIV-------NKGRLKEDEARKYFRQLISAVAYCH---SRGIVHRDLKPENILLDGNEGNLKLSDFGLSA  169 (370)
T ss_pred             EecCCccHHHHHH-------HcCCCChHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEecCCCCCEEEecccccc
Confidence            9999999999993       3677899999999999999999999   9999999999999999999 999999999999


Q ss_pred             ccCCCCccchhhhhcccccccccccCCC-------------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchH
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNEDD-------------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQ  255 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~~~-------------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (292)
                      ... .........+|++.|.+||+....             ||+  .|+....||.. ............+....+.  .
T Consensus       170 ~~~-~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d-~~~~~l~~ki~~~~~~~p~--~  245 (370)
T KOG0583|consen  170 ISP-GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDD-SNVPNLYRKIRKGEFKIPS--Y  245 (370)
T ss_pred             ccC-CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCC-ccHHHHHHHHhcCCccCCC--C
Confidence            884 222335678999999777765432             888  55544445544 3444444455566655554  3


Q ss_pred             H-HHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          256 Q-LQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       256 ~-~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      . ++++..|+.+|+..||.+|+ +.+|+ .-..++
T Consensus       246 ~~S~~~~~Li~~mL~~~P~~R~t~~~i~-~h~w~~  279 (370)
T KOG0583|consen  246 LLSPEARSLIEKMLVPDPSTRITLLEIL-EHPWFQ  279 (370)
T ss_pred             cCCHHHHHHHHHHcCCCcccCCCHHHHh-hChhhc
Confidence            4 88999999999999999999 99998 544444

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=6.6e-36  Score=258.99  Aligned_cols=223  Identities=18%  Similarity=0.262  Sum_probs=191.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc--hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR--TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|..+.       +.+.||+|.+.+....  ..+.+.+|++++++++||||+.++++|++...+|+|.||+.
T Consensus        12 ~Gsfg~VYKgrrK~-------t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~a~   84 (808)
T KOG0597|consen   12 EGSFGRVYKGRRKY-------TIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEYAV   84 (808)
T ss_pred             CCccceeeeccccc-------ceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehhhh
Confidence            89999999999875       8999999999775432  34668999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      + +|..++       .....++++.+..++.+++.||.|||   +.+|+|||+||.|||++.+|.+|+||||+|+.+..+
T Consensus        85 g-~L~~il-------~~d~~lpEe~v~~~a~~LVsaL~yLh---s~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~  153 (808)
T KOG0597|consen   85 G-DLFTIL-------EQDGKLPEEQVRAIAYDLVSALYYLH---SNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTN  153 (808)
T ss_pred             h-hHHHHH-------HhccCCCHHHHHHHHHHHHHHHHHHH---hcCcccccCCcceeeecCCCceeechhhhhhhcccC
Confidence            6 999999       56788999999999999999999999   999999999999999999999999999999987653


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                       +.......||+-|++|+.....           ||+  |++...+||+. .++..++...+.....++.  .....+.+
T Consensus       154 -t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a-~si~~Lv~~I~~d~v~~p~--~~S~~f~n  229 (808)
T KOG0597|consen  154 -TSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYA-RSITQLVKSILKDPVKPPS--TASSSFVN  229 (808)
T ss_pred             -ceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhcCCCCCcc--cccHHHHH
Confidence             3445667899999999887755           988  99933445544 3566666666666655554  88889999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ++...|++||.+|. ..+++.
T Consensus       230 fl~gLL~kdP~~RltW~~Ll~  250 (808)
T KOG0597|consen  230 FLQGLLIKDPAQRLTWTDLLG  250 (808)
T ss_pred             HHHHHhhcChhhcccHHHHhc
Confidence            99999999999999 888764

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-36  Score=240.81  Aligned_cols=230  Identities=17%  Similarity=0.243  Sum_probs=197.1

Q ss_pred             cccccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCcccee
Q 044211           23 IRSFCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLI   98 (292)
Q Consensus        23 ~~~~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~   98 (292)
                      ..++++++.+..... .|+||.|..++.+.       +|..+|+|+++..   +..+.+...+|..+|+.+.||.+++++
T Consensus        38 ~~~~~l~dfe~~~tlGtGSFGrV~LVr~k~-------~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~  110 (355)
T KOG0616|consen   38 QNPYSLQDFERLKTLGTGSFGRVHLVREKH-------SGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLY  110 (355)
T ss_pred             CCCcchhhhhheeeeccCccceEEEEEEcc-------CCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEE
Confidence            334888888777665 99999999999987       8999999999764   334556788999999999999999999


Q ss_pred             eeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC
Q 044211           99 GCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE  178 (292)
Q Consensus        99 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~  178 (292)
                      +.+.+.+.++|||||++||-|..+++       ....+++..+..++.||+.||.|||   ...|++|||||+|||+|.+
T Consensus       111 ~t~~d~~~lymvmeyv~GGElFS~Lr-------k~~rF~e~~arFYAAeivlAleylH---~~~iiYRDLKPENiLlD~~  180 (355)
T KOG0616|consen  111 GTFKDNSNLYMVMEYVPGGELFSYLR-------KSGRFSEPHARFYAAEIVLALEYLH---SLDIIYRDLKPENLLLDQN  180 (355)
T ss_pred             EeeccCCeEEEEEeccCCccHHHHHH-------hcCCCCchhHHHHHHHHHHHHHHHH---hcCeeeccCChHHeeeccC
Confidence            99999999999999999999999994       4567999999999999999999999   9999999999999999999


Q ss_pred             CceEEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccc
Q 044211          179 NVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIM  245 (292)
Q Consensus       179 ~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~  245 (292)
                      |.+||+|||+|+.....    ..+.+||+.|++||+....           ||+  ||+...+||+... ...+++..+.
T Consensus       181 G~iKitDFGFAK~v~~r----T~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~-~~~iY~KI~~  255 (355)
T KOG0616|consen  181 GHIKITDFGFAKRVSGR----TWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDN-PIQIYEKILE  255 (355)
T ss_pred             CcEEEEeccceEEecCc----EEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCC-hHHHHHHHHh
Confidence            99999999999988654    4678999999999877543           998  9993344555443 3667777888


Q ss_pred             cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC
Q 044211          246 GDRSCSGNQQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       246 ~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                      +....|.  ...+.+.+|+.+.++.|-.+|-
T Consensus       256 ~~v~fP~--~fs~~~kdLl~~LL~vD~t~R~  284 (355)
T KOG0616|consen  256 GKVKFPS--YFSSDAKDLLKKLLQVDLTKRF  284 (355)
T ss_pred             CcccCCc--ccCHHHHHHHHHHHhhhhHhhh
Confidence            8877765  7888999999999999999993

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-36  Score=260.58  Aligned_cols=235  Identities=19%  Similarity=0.277  Sum_probs=191.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|-||.||.|.|++       ..-.||||.++.+ .....+|+.|..+|+.+.|||+|+++|+|.....+|||+|||..|
T Consensus       277 GGQYGeVYeGvWKk-------yslTvAVKtLKED-tMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yG  348 (1157)
T KOG4278|consen  277 GGQYGEVYEGVWKK-------YSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYG  348 (1157)
T ss_pred             CCcccceeeeeeec-------cceeeehhhhhhc-chhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCc
Confidence            67799999999986       7788999999876 345689999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.++++++     .+..++.-.++.++.||+.||.||.   .+++|||||..+|+|+.++..+|++|||+++.+..+.+
T Consensus       349 NLLdYLRec-----nr~ev~avvLlyMAtQIsSaMeYLE---kknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTY  420 (1157)
T KOG4278|consen  349 NLLDYLREC-----NRSEVPAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTY  420 (1157)
T ss_pred             cHHHHHHHh-----chhhcchhHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhccccccceEEeeccchhhhhcCCce
Confidence            999999765     4566777888999999999999999   99999999999999999999999999999999988766


Q ss_pred             cchhhhhcccccc------cccccCCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFD------LARLNEDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~------~~~~~~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......-...|.      ..-++.|+     ||+  |+. -...|+... .+.+++ ..+...+.+..+..|++.+++|
T Consensus       421 TAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGi-dlSqVY-~LLEkgyRM~~PeGCPpkVYeL  498 (1157)
T KOG4278|consen  421 TAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGI-DLSQVY-GLLEKGYRMDGPEGCPPKVYEL  498 (1157)
T ss_pred             ecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCc-cHHHHH-HHHhccccccCCCCCCHHHHHH
Confidence            5432222233443      33455555     888  877 333343332 222222 3455566666667999999999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      |..||+.+|.+|| +.|+-+.|+.|-.+
T Consensus       499 MraCW~WsPsDRPsFaeiHqafEtmf~~  526 (1157)
T KOG4278|consen  499 MRACWNWSPSDRPSFAEIHQAFETMFSS  526 (1157)
T ss_pred             HHHHhcCCcccCccHHHHHHHHHHHhcc
Confidence            9999999999999 99999999987643

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=1.2e-34  Score=244.06  Aligned_cols=235  Identities=14%  Similarity=0.190  Sum_probs=175.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|++...    ...+..||+|.++... ......+.+|+..+++++||||+++++++..++..++||||+++
T Consensus        15 ~G~fg~V~~~~~~~~----~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   90 (266)
T cd05064          15 TGRFGELCRGCLKLP----SKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSN   90 (266)
T ss_pred             ccCCCeEEEEEEecC----CCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEeCCC
Confidence            899999999986410    1156789999987653 23345789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++..      ....+++..++.++.|++.||+|||   +.+++|+||||+||+++.++.++++|||.+.......
T Consensus        91 ~~L~~~l~~------~~~~l~~~~~~~~~~~i~~al~~lH---~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~  161 (266)
T cd05064          91 GALDSFLRK------HEGQLVAGQLMGMLPGLASGMKYLS---EMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEA  161 (266)
T ss_pred             CcHHHHHHh------CCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeeccccHhhEEEcCCCcEEECCCcccccccccc
Confidence            999999942      2346889999999999999999999   8999999999999999999999999999876543222


Q ss_pred             ccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      ........++..|++|+...      ++     |++  |++ ....|+.... ........ ......+.+..++..+.+
T Consensus       162 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~  239 (266)
T cd05064         162 IYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMS-GQDVIKAV-EDGFRLPAPRNCPNLLHQ  239 (266)
T ss_pred             hhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCC-HHHHHHHH-HCCCCCCCCCCCCHHHHH
Confidence            11111223345677776432      23     888  755 3344443322 12222211 111112222467889999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      ++.+||+.+|++|| +.+|.+.|..+
T Consensus       240 li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         240 LMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             HHHHHcCCCchhCCCHHHHHHHHHhh
Confidence            99999999999999 99999998765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=2.5e-35  Score=247.43  Aligned_cols=234  Identities=26%  Similarity=0.369  Sum_probs=174.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|.||.||+|.+..   .....+..|+||.++.... ...+.+.+|++.+++++||||++++|++...+..++|+||+++
T Consensus         9 ~G~fg~v~~~~~~~---~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~~~   85 (259)
T PF07714_consen    9 EGSFGKVYRAEWKQ---KDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYCPG   85 (259)
T ss_dssp             EESSEEEEEEEEES---TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--TT
T ss_pred             cCCCcEEEEEEEEc---ccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccccccc
Confidence            79999999999851   1122578899999976433 3467899999999999999999999999988889999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++...     ....+++..++.|+.|++.||.|||   +.+++|++|+++||++++++.+||+|||++.......
T Consensus        86 g~L~~~L~~~-----~~~~~~~~~~~~i~~~i~~~l~~Lh---~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~  157 (259)
T PF07714_consen   86 GSLDDYLKSK-----NKEPLSEQQRLSIAIQIAEALSYLH---SNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKS  157 (259)
T ss_dssp             EBHHHHHHHT-----CTTTSBHHHHHHHHHHHHHHHHHHH---HTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSS
T ss_pred             cccccccccc-----ccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence            9999999532     3467899999999999999999999   8899999999999999999999999999998773222


Q ss_pred             c-cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          197 T-HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       197 ~-~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      . ...........|.+|+...      ++     |++  |++ +...|+... ...++......+.. .+.+..++..+.
T Consensus       158 ~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~  235 (259)
T PF07714_consen  158 KYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY-DNEEIIEKLKQGQR-LPIPDNCPKDIY  235 (259)
T ss_dssp             SEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS-CHHHHHHHHHTTEE-TTSBTTSBHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc-ceeccchhHHHH
Confidence            2 2223344556776666543      22     998  888 444444332 33333333222222 222346788899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      +++.+||+.||++|| +.+|++.|
T Consensus       236 ~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  236 SLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             HHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             HHHHHHcCCChhhCcCHHHHHhcC
Confidence            999999999999999 99999886

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.7e-35  Score=245.67  Aligned_cols=222  Identities=20%  Similarity=0.267  Sum_probs=184.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|.||.|-+|..+.       .|+.||||.+.++.-   +..-.+.+|+++|+.|+||||++++.+|.+++.+.+||||.
T Consensus        63 kGTYGKVk~A~e~~-------sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYa  135 (668)
T KOG0611|consen   63 KGTYGKVKLAYEHK-------SGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYA  135 (668)
T ss_pred             CCcccceeehhhcc-------CCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEec
Confidence            89999999999865       999999999976533   33346889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+|.|.+++       ..+..+++.....++.||++|+.|+|   .++++|||||.+|||+|.|+++||+|||++-.+..
T Consensus       136 S~GeLYDYi-------Ser~~LsErEaRhfFRQIvSAVhYCH---knrVvHRDLKLENILLD~N~NiKIADFGLSNly~~  205 (668)
T KOG0611|consen  136 SGGELYDYI-------SERGSLSEREARHFFRQIVSAVHYCH---KNRVVHRDLKLENILLDQNNNIKIADFGLSNLYAD  205 (668)
T ss_pred             CCccHHHHH-------HHhccccHHHHHHHHHHHHHHHHHHh---hccceecccchhheeecCCCCeeeeccchhhhhcc
Confidence            999999999       46678999999999999999999999   99999999999999999999999999999987754


Q ss_pred             CCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .  .....++|++-|..|++....            ||+  .|+ |..  +++......++.+.-.+.+..+   ..+.+
T Consensus       206 ~--kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtM--PFDG~Dhk~lvrQIs~GaYrEP---~~PSd  278 (668)
T KOG0611|consen  206 K--KFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTM--PFDGRDHKRLVRQISRGAYREP---ETPSD  278 (668)
T ss_pred             c--cHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhccc--ccCCchHHHHHHHhhcccccCC---CCCch
Confidence            3  335678899988777666544            888  444 543  3444455555566556655443   23446


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ...||.++|..||++|- +.+|...
T Consensus       279 A~gLIRwmLmVNP~RRATieDiAsH  303 (668)
T KOG0611|consen  279 ASGLIRWMLMVNPERRATIEDIASH  303 (668)
T ss_pred             HHHHHHHHHhcCcccchhHHHHhhh
Confidence            77899999999999999 9998765

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=3.4e-34  Score=241.30  Aligned_cols=237  Identities=18%  Similarity=0.237  Sum_probs=182.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.++..   .......+.+|+.++++++||||+++++++...+..++++||+
T Consensus        12 ~g~~~~v~~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   84 (267)
T cd08228          12 RGQFSEVYRATCLL-------DRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLELA   84 (267)
T ss_pred             cCCCeeEEEEEEeC-------CCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEEEec
Confidence            89999999999865       8899999987642   2233456889999999999999999999999989999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++....   .....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++.....
T Consensus        85 ~~~~L~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~  158 (267)
T cd08228          85 DAGDLSQMIKYFK---KQKRLIPERTVWKYFVQLCSAVEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             CCCcHHHHHHHhh---hccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCCHHHEEEcCCCCEEECccccceeccc
Confidence            9999999885332   23456889999999999999999999   89999999999999999999999999999887643


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ... ......++..|++|+....      +     |++  ||+ |+.+............+.......++......+..+
T Consensus       159 ~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (267)
T cd08228         159 KTT-AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKL  237 (267)
T ss_pred             hhH-HHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCCCCCCChhhcCHHH
Confidence            322 1223457777877775432      2     888  888 554322222222222222222222222223566789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      .+++.+||+.+|++|| +.++++.|++++
T Consensus       238 ~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         238 RELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             HHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence            9999999999999999 999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.9e-34  Score=247.60  Aligned_cols=245  Identities=17%  Similarity=0.173  Sum_probs=173.9

Q ss_pred             ccCCCeeEeeecCCCC---------ccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcc
Q 044211           38 IKNGYKLYEGFFQNRP---------ISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~---------~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~  107 (292)
                      +|+||.||+|.+....         .....++..||+|.+..... .....+.+|+.++.+++||||+++++++...+..
T Consensus        15 ~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   94 (304)
T cd05096          15 EGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPL   94 (304)
T ss_pred             ccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEecCCce
Confidence            8999999999863100         00011345799999876432 3345789999999999999999999999998999


Q ss_pred             eEEEeccCCCChhHHhhhhCCC------------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe
Q 044211          108 ILVFEYINCGSLADRIRIHHTP------------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF  175 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~------------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili  175 (292)
                      ++||||+.+|+|.+++......            ......+++..++.++.|++.||.|||   ..+++|+||||+|||+
T Consensus        95 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~ivH~dlkp~Nill  171 (304)
T cd05096          95 CMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLS---SLNFVHRDLATRNCLV  171 (304)
T ss_pred             EEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH---HCCccccCcchhheEE
Confidence            9999999999999998543211            112245788899999999999999999   8999999999999999


Q ss_pred             cCCCceEEeecccccccCCCCcc-chhhhhcccccccccccC------CC-----CeE--EEc-cch-hhhhhccchhhh
Q 044211          176 NEENVAKLFDFSFSISIPEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHI-KKYFEEDRLNEI  239 (292)
Q Consensus       176 ~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~-~~~~~~~~~~~~  239 (292)
                      +.++.+||+|||++......... ......++..|++|++..      ++     |++  ||+ +.. .|+.. ......
T Consensus       172 ~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~-~~~~~~  250 (304)
T cd05096         172 GENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGE-LTDEQV  250 (304)
T ss_pred             cCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCc-CCHHHH
Confidence            99999999999999766433221 122334466787776532      22     888  776 432 23222 111111


Q ss_pred             cc---cccc---cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          240 ID---PLIM---GDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       240 ~~---~~~~---~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      +.   ....   .......++.++..+.+++.+||+.||++|| +.+|.+.|++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~~  304 (304)
T cd05096         251 IENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLTE  304 (304)
T ss_pred             HHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHhC
Confidence            11   0000   0000111135677899999999999999999 9999988863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=2.2e-34  Score=241.11  Aligned_cols=227  Identities=17%  Similarity=0.256  Sum_probs=174.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++.+.        ++..+|+|.+.... .....+.+|+.++++++||||+++++++......++||||+++|
T Consensus        14 ~G~~~~vy~~~~~--------~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~   84 (256)
T cd05114          14 SGQFGVVHLGKWR--------AQIKVAIKAINEGA-MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENG   84 (256)
T ss_pred             CCcCceEEEEEec--------cCceEEEEecccCC-ccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCCC
Confidence            8999999999986        77789999986442 23467889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..      ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||.+........
T Consensus        85 ~L~~~~~~------~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~  155 (256)
T cd05114          85 CLLNYLRQ------RQGKLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEY  155 (256)
T ss_pred             cHHHHHHh------CccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcceEEEcCCCeEEECCCCCccccCCCce
Confidence            99999831      2245889999999999999999999   89999999999999999999999999999987654333


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|++|+...      ++     |++  +|+. +..|+... ...+.+.....+.... .+...+..+.++
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~-~~~~~~~~i~~~~~~~-~~~~~~~~~~~l  233 (256)
T cd05114         156 TSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKK-SNYEVVEMISRGFRLY-RPKLASMTVYEV  233 (256)
T ss_pred             eccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHCCCCCC-CCCCCCHHHHHH
Confidence            3222333455677776543      22     877  8773 44444332 2222222222222211 112445679999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      +.+||+.+|++|| +.++++.|
T Consensus       234 i~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         234 MYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             HHHHccCCcccCcCHHHHHHhh
Confidence            9999999999999 99999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-35  Score=254.36  Aligned_cols=226  Identities=19%  Similarity=0.203  Sum_probs=187.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      .|+|++|++|....       +++.||||++.+.   +....+.+..|-..|.+| .||.|++++-.|.+...+|+|+||
T Consensus        83 eGSYStV~~A~~~~-------t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFvLe~  155 (604)
T KOG0592|consen   83 EGSYSTVVLAREKA-------TGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYFVLEY  155 (604)
T ss_pred             cccceeEEEeeecC-------CCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEEEEEe
Confidence            89999999999876       9999999998642   223345577899999999 799999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|.|.++|++       -+.+++.....++.+|+.||.|||   +.|||||||||+|||+++++.++|+|||.|+.+.
T Consensus       156 A~nGdll~~i~K-------~Gsfde~caR~YAAeIldAleylH---~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~  225 (604)
T KOG0592|consen  156 APNGDLLDLIKK-------YGSFDETCARFYAAEILDALEYLH---SNGIIHRDLKPENILLDKDGHIKITDFGSAKILS  225 (604)
T ss_pred             cCCCcHHHHHHH-------hCcchHHHHHHHHHHHHHHHHHHH---hcCceeccCChhheeEcCCCcEEEeeccccccCC
Confidence            999999999953       456999999999999999999999   9999999999999999999999999999999875


Q ss_pred             CCCcc----------ch--hhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCC
Q 044211          194 EGETH----------IS--ELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDR  248 (292)
Q Consensus       194 ~~~~~----------~~--~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~  248 (292)
                      +....          ..  ..++||..|.+||+....           ||+  .|+...+|| ...+...+++.++.-++
T Consensus       226 ~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPF-ra~NeyliFqkI~~l~y  304 (604)
T KOG0592|consen  226 PSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPF-RAANEYLIFQKIQALDY  304 (604)
T ss_pred             hhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHhcc
Confidence            42221          11  458999999888877655           888  777333344 44444555666666666


Q ss_pred             CCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          249 SCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       249 ~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .++.  ..++...+|+.+.|..||.+|+ +.+|-+.
T Consensus       305 ~fp~--~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~H  338 (604)
T KOG0592|consen  305 EFPE--GFPEDARDLIKKLLVRDPSDRLTSQQIKAH  338 (604)
T ss_pred             cCCC--CCCHHHHHHHHHHHccCccccccHHHHhhC
Confidence            6665  7778999999999999999999 9777654

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=236.79  Aligned_cols=239  Identities=16%  Similarity=0.161  Sum_probs=180.1

Q ss_pred             cccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeee
Q 044211           25 SFCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCC  101 (292)
Q Consensus        25 ~~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~  101 (292)
                      +=+.+|.+..... +|+||.||+|++..       +++.||+|.++..  .....-.-++|+.+|.+++|||||.+-.+.
T Consensus        72 Crsv~efe~lnrI~EGtyGiVYRakdk~-------t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVV  144 (419)
T KOG0663|consen   72 CRSVEEFEKLNRIEEGTYGVVYRAKDKK-------TDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVV  144 (419)
T ss_pred             cccHHHHHHHhhcccCcceeEEEeccCC-------cceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEE
Confidence            4466777777665 99999999999987       9999999999765  333445678999999999999999999998


Q ss_pred             ecC--CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC
Q 044211          102 LET--QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN  179 (292)
Q Consensus       102 ~~~--~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~  179 (292)
                      ...  +.+|+|||||+. +|..++.      .-..++...++..++.|+++|+.|||   ...|+|||||++|+|++..|
T Consensus       145 vG~~~d~iy~VMe~~Eh-DLksl~d------~m~q~F~~~evK~L~~QlL~glk~lH---~~wilHRDLK~SNLLm~~~G  214 (419)
T KOG0663|consen  145 VGSNMDKIYIVMEYVEH-DLKSLME------TMKQPFLPGEVKTLMLQLLRGLKHLH---DNWILHRDLKTSNLLLSHKG  214 (419)
T ss_pred             eccccceeeeeHHHHHh-hHHHHHH------hccCCCchHHHHHHHHHHHHHHHHHh---hceeEecccchhheeeccCC
Confidence            864  469999999997 9999994      23468999999999999999999999   89999999999999999999


Q ss_pred             ceEEeecccccccCCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchh---hh--
Q 044211          180 VAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLN---EI--  239 (292)
Q Consensus       180 ~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~---~~--  239 (292)
                      .+||+|||+|+.+.+.- ......+-|.+|.+|+..-.+            |||  |++ +++ -+.....+.   .+  
T Consensus       215 ~lKiaDFGLAR~ygsp~-k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kP-lf~G~sE~dQl~~If~  292 (419)
T KOG0663|consen  215 ILKIADFGLAREYGSPL-KPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKP-LFPGKSEIDQLDKIFK  292 (419)
T ss_pred             cEEecccchhhhhcCCc-ccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCC-CCCCCchHHHHHHHHH
Confidence            99999999999887652 334456678888666654332            888  887 554 111111111   00  


Q ss_pred             --------cccccccC----------CCCCC-c-----hHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          240 --------IDPLIMGD----------RSCSG-N-----QQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       240 --------~~~~~~~~----------~~~~~-~-----~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                              +.+.+...          .+... .     ...+..-.+|+...+.+||.+|- +.+.++
T Consensus       293 llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~  360 (419)
T KOG0663|consen  293 LLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLK  360 (419)
T ss_pred             HhCCCccccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhc
Confidence                    01111000          00000 0     01346788999999999999999 998775

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-35  Score=250.52  Aligned_cols=226  Identities=19%  Similarity=0.202  Sum_probs=188.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||+|++... ....++.+..|+.+|..++++||.++||.+..+..+|++||||.+
T Consensus        23 rGsfG~Vyk~~d~~-------t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~g   95 (467)
T KOG0201|consen   23 RGSFGEVYKAIDNK-------TKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGG   95 (467)
T ss_pred             ccccceeeeeeecc-------ccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcC
Confidence            99999999999987       9999999999865 344567889999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |++.+++       ..+..+++..+.-++.++..|+.|||   ..+.+|||||+.|||+..+|.+|++|||.+.++....
T Consensus        96 Gsv~~lL-------~~~~~~~E~~i~~ilre~l~~l~ylH---~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~  165 (467)
T KOG0201|consen   96 GSVLDLL-------KSGNILDEFEIAVILREVLKGLDYLH---SEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTV  165 (467)
T ss_pred             cchhhhh-------ccCCCCccceeeeehHHHHHHhhhhh---hcceecccccccceeEeccCcEEEEecceeeeeechh
Confidence            9999999       35556688889999999999999999   8999999999999999999999999999999987665


Q ss_pred             ccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      ... ..++||+-||+||+....           |++  ||....+|+.......- +- .+....|+.....+.+.++++
T Consensus       166 ~rr-~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrv-lf-lIpk~~PP~L~~~~S~~~kEF  242 (467)
T KOG0201|consen  166 KRR-KTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRV-LF-LIPKSAPPRLDGDFSPPFKEF  242 (467)
T ss_pred             hcc-ccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceE-EE-eccCCCCCccccccCHHHHHH
Confidence            544 789999999999887653           888  88833444444333222 11 122222222224778889999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +..||++||+.|| |.++++.
T Consensus       243 V~~CL~k~P~~RpsA~~LLKh  263 (467)
T KOG0201|consen  243 VEACLDKNPEFRPSAKELLKH  263 (467)
T ss_pred             HHHHhhcCcccCcCHHHHhhh
Confidence            9999999999999 9998875

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=4.1e-34  Score=252.29  Aligned_cols=244  Identities=16%  Similarity=0.190  Sum_probs=176.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+...  ....++..||+|.++... ....+.+.+|+.++..+ +||||+++++++...+..++||||++
T Consensus        45 ~G~fG~V~~~~~~~~--~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~  122 (375)
T cd05104          45 AGAFGKVVEATAYGL--FKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPTLVITEYCC  122 (375)
T ss_pred             CCccceEEEEEEecc--ccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcceeeehhcc
Confidence            999999999975210  001156689999997543 23445788999999999 89999999999999999999999999


Q ss_pred             CCChhHHhhhhCCC------------------------------------------------------------------
Q 044211          116 CGSLADRIRIHHTP------------------------------------------------------------------  129 (292)
Q Consensus       116 ~gsL~~~l~~~~~~------------------------------------------------------------------  129 (292)
                      +|+|.++++.....                                                                  
T Consensus       123 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (375)
T cd05104         123 YGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSE  202 (375)
T ss_pred             CCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccccHHH
Confidence            99999999542210                                                                  


Q ss_pred             --CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCccc-hhhhhcc
Q 044211          130 --QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHI-SELLSGL  206 (292)
Q Consensus       130 --~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~~~-~~~~~g~  206 (292)
                        ......+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++.......... .....++
T Consensus       203 ~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~  279 (375)
T cd05104         203 ILEEDELALDTEDLLSFSYQVAKGMSFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLP  279 (375)
T ss_pred             HHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCC
Confidence              011235788899999999999999999   8999999999999999999999999999998765432211 1122345


Q ss_pred             cccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCC
Q 044211          207 RAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESP  272 (292)
Q Consensus       207 ~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP  272 (292)
                      ..|++|+....      +     |++  ||+ +...|+..........+....+... ..+...+..+.+|+.+||+.||
T Consensus       280 ~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dP  358 (375)
T cd05104         280 VKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGYRM-LSPECAPSEMYDIMKSCWDADP  358 (375)
T ss_pred             cceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCccC-CCCCCCCHHHHHHHHHHccCCh
Confidence            56877775432      2     888  877 4444443322111111111111111 1112345689999999999999


Q ss_pred             CCCC-HHHHHHHHHHh
Q 044211          273 VDRP-MVDVAKKTQAN  287 (292)
Q Consensus       273 ~~RP-~~el~~~L~~l  287 (292)
                      ++|| +.+|++.|++.
T Consensus       359 ~~RPs~~eil~~l~~~  374 (375)
T cd05104         359 LKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             hHCcCHHHHHHHHHhh
Confidence            9999 99999999864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-34  Score=248.77  Aligned_cols=221  Identities=16%  Similarity=0.185  Sum_probs=173.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.++..   .......+.+|+.++++++||||+++++++...+..++||||+
T Consensus         3 ~G~~g~Vy~~~~~~-------~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   75 (312)
T cd05585           3 KGSFGKVMQVRKRD-------TQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFI   75 (312)
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCC
Confidence            69999999999875       7889999998642   2334567889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++.....
T Consensus        76 ~~g~L~~~l~-------~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~  145 (312)
T cd05585          76 NGGELFHHLQ-------REGRFDLSRARFYTAELLCALENLH---KFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMK  145 (312)
T ss_pred             CCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHeEECCCCcEEEEECcccccCcc
Confidence            9999999993       3446899999999999999999999   89999999999999999999999999999875432


Q ss_pred             CCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      .. .......||+.|++||...      ++     |++  +|+ |+. |+.. .................+  ...++.+
T Consensus       146 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~-pf~~-~~~~~~~~~~~~~~~~~~--~~~~~~~  220 (312)
T cd05585         146 DD-DKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLP-PFYD-ENVNEMYRKILQEPLRFP--DGFDRDA  220 (312)
T ss_pred             CC-CccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCC-CcCC-CCHHHHHHHHHcCCCCCC--CcCCHHH
Confidence            22 2233456899998887543      22     888  888 544 4332 222333333333332222  2566789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDV  280 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el  280 (292)
                      .+++.+||+.||.+|| +..+
T Consensus       221 ~~li~~~L~~dp~~R~~~~~~  241 (312)
T cd05585         221 KDLLIGLLSRDPTRRLGYNGA  241 (312)
T ss_pred             HHHHHHHcCCCHHHcCCCCCH
Confidence            9999999999999997 5433

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=8.2e-34  Score=241.02  Aligned_cols=243  Identities=21%  Similarity=0.287  Sum_probs=180.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..  .........||+|.++... ......+.+|+..+++++||||+++++++......++++||+++
T Consensus        15 ~G~~g~Vy~~~~~~--~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~   92 (283)
T cd05048          15 EGAFGKVYKGELTG--PNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAH   92 (283)
T ss_pred             CccCCcEEEEEEec--CCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEEEEecCCC
Confidence            89999999998742  0001133689999987543 23445689999999999999999999999988889999999999


Q ss_pred             CChhHHhhhhCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          117 GSLADRIRIHHTPQ---------PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       117 gsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      |+|.+++.......         .....+++..++.++.|++.||.|||   ..+++|+||||+||++++++.++|+|||
T Consensus        93 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nil~~~~~~~~L~dfg  169 (283)
T cd05048          93 GDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS---SHHFVHRDLAARNCLVGEGLTVKISDFG  169 (283)
T ss_pred             CcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccccceEEEcCCCcEEECCCc
Confidence            99999995432111         11256888999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCc-cchhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCC
Q 044211          188 FSISIPEGET-HISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       188 ~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (292)
                      ++........ .......++..|++||...      ++     |++  ||+. ...|+... ...+.......+..+ ..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~-~~~~~~~~i~~~~~~-~~  247 (283)
T cd05048         170 LSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGF-SNQEVIEMIRSRQLL-PC  247 (283)
T ss_pred             ceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHcCCcC-CC
Confidence            9976543321 1223344567788877543      22     888  8773 33343322 222222222222221 22


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +..++..+.+|+.+||+.||++|| +.+|++.|+.+
T Consensus       248 ~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         248 PEDCPARVYALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence            246788999999999999999999 99999999763

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=6.7e-34  Score=239.11  Aligned_cols=232  Identities=18%  Similarity=0.252  Sum_probs=179.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||+|.+..       +++.||+|.+.... .....+.+|+..++.++|+||+++++++...+..++++||++++
T Consensus        16 ~g~~~~v~~~~~~~-------~~~~~~~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (263)
T cd05052          16 GGQYGEVYEGVWKK-------YSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYG   87 (263)
T ss_pred             CcccceEEEEEEec-------CCceEEEEEecCCc-hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCCC
Confidence            89999999999875       78999999987543 33567899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...     ....+++..++.++.|++.||.|||   ..+++|+||+|+||++++++.+||+|||++........
T Consensus        88 ~L~~~~~~~-----~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~  159 (263)
T cd05052          88 NLLDYLREC-----NRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY  159 (263)
T ss_pred             cHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCcEEeCCCcccccccccee
Confidence            999999421     2356889999999999999999999   89999999999999999999999999999987754433


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|.+|+...      ++     |++  ||+ +...|+... ...+....... ......+..++..+.++
T Consensus       160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~l  237 (263)
T cd05052         160 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI-DLSQVYELLEK-GYRMERPEGCPPKVYEL  237 (263)
T ss_pred             eccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHC-CCCCCCCCCCCHHHHHH
Confidence            2222233355677776543      22     888  887 344444322 22222221111 11112223567889999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +.+||+.||++|| +.++++.|+.+
T Consensus       238 i~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         238 MRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             HHHHccCCcccCCCHHHHHHHHHhh
Confidence            9999999999999 99999999875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=6.1e-34  Score=246.47  Aligned_cols=217  Identities=15%  Similarity=0.200  Sum_probs=170.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.++..   .......+.+|+.++++++||||+++++++...+..++||||+
T Consensus         5 ~G~~g~Vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~   77 (323)
T cd05571           5 KGTFGKVILVREKA-------TGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYA   77 (323)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCC
Confidence            79999999999865       8899999998753   2234456889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.....
T Consensus        78 ~~~~L~~~l~-------~~~~~~~~~~~~~~~qi~~~L~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~  147 (323)
T cd05571          78 NGGELFFHLS-------RERVFSEDRARFYGAEIVSALGYLH---SCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGIS  147 (323)
T ss_pred             CCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEeeCCCCccccc
Confidence            9999999983       3457899999999999999999999   89999999999999999999999999999875432


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ... ......|++.|++||....      +     |++  ||+ |+. |+... ...........+....+  ...++.+
T Consensus       148 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~-Pf~~~-~~~~~~~~~~~~~~~~p--~~~~~~~  222 (323)
T cd05571         148 DGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL-PFYNQ-DHEKLFELILMEEIRFP--RTLSPEA  222 (323)
T ss_pred             CCC-cccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCC-CCCCC-CHHHHHHHHHcCCCCCC--CCCCHHH
Confidence            211 1234568999988886532      2     988  888 544 43322 22222222222222222  2567789


Q ss_pred             HHHHhHhcCCCCCCCC
Q 044211          261 AHLIFECVNESPVDRP  276 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP  276 (292)
                      .+++.+||+.||++||
T Consensus       223 ~~li~~~L~~dP~~R~  238 (323)
T cd05571         223 KSLLAGLLKKDPKQRL  238 (323)
T ss_pred             HHHHHHHccCCHHHcC
Confidence            9999999999999999

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=4.1e-34  Score=252.11  Aligned_cols=245  Identities=17%  Similarity=0.207  Sum_probs=177.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+...  +...++..||+|.++... ......+.+|+.+++.+ +|+||+++++++...+..++||||++
T Consensus        48 ~G~fg~V~~~~~~~~--~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~lv~ey~~  125 (374)
T cd05106          48 AGAFGKVVEATAFGL--GKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVITEYCC  125 (374)
T ss_pred             CCCcccEEEEEEecC--CcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeEEeHhhcc
Confidence            999999999986320  001144689999997543 33345688999999999 89999999999999999999999999


Q ss_pred             CCChhHHhhhhCCC---------------------------------------------------------------CCC
Q 044211          116 CGSLADRIRIHHTP---------------------------------------------------------------QPQ  132 (292)
Q Consensus       116 ~gsL~~~l~~~~~~---------------------------------------------------------------~~~  132 (292)
                      +|+|.++++.....                                                               ...
T Consensus       126 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (374)
T cd05106         126 YGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTED  205 (374)
T ss_pred             CCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccccchhccCC
Confidence            99999998543210                                                               011


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCcc-chhhhhccccccc
Q 044211          133 HEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH-ISELLSGLRAFDL  211 (292)
Q Consensus       133 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~~-~~~~~~g~~~y~~  211 (292)
                      ...+++..+++++.|++.||.|||   ..+++||||||+|||+++++.+||+|||++......... ......++..|++
T Consensus       206 ~~~l~~~~~~~i~~qi~~aL~yLH---~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~a  282 (374)
T cd05106         206 SWPLDLDDLLRFSSQVAQGMDFLA---SKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMA  282 (374)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHH---HCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeC
Confidence            235788899999999999999999   899999999999999999999999999999866433221 1122234567877


Q ss_pred             ccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-
Q 044211          212 ARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-  276 (292)
Q Consensus       212 ~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-  276 (292)
                      |++..      ++     |++  ||+ ....|+........... ..........+...++.+.+++.+||+.||++|| 
T Consensus       283 PE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs  361 (374)
T cd05106         283 PESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYK-MVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERPT  361 (374)
T ss_pred             HHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHH-HHHcccCccCCCCCCHHHHHHHHHHcCCChhhCcC
Confidence            77543      22     888  877 34444433221111111 1111111111123467899999999999999999 


Q ss_pred             HHHHHHHHHHhh
Q 044211          277 MVDVAKKTQANV  288 (292)
Q Consensus       277 ~~el~~~L~~l~  288 (292)
                      +.++++.|+++.
T Consensus       362 ~~~l~~~l~~~~  373 (374)
T cd05106         362 FSQISQLIQRQL  373 (374)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999874

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-34  Score=243.28  Aligned_cols=228  Identities=21%  Similarity=0.259  Sum_probs=181.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--------------cchHHHHHHHHHHHHhcCCCCccceeeeeec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--------------PRTYDCCINNIVYASQMIHRCIFKLIGCCLE  103 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--------------~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~  103 (292)
                      .|.||.|-+|....       +++.||||++.+..              ....++..+|+.+|+++.|||||+++++..+
T Consensus       107 ~G~yGkVkLar~~~-------~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEvLDD  179 (576)
T KOG0585|consen  107 SGQYGKVKLARDEV-------DGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEVLDD  179 (576)
T ss_pred             CCccceEEEEeecC-------CCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEEeecC
Confidence            89999999999976       99999999985421              1123578999999999999999999999876


Q ss_pred             C--CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCce
Q 044211          104 T--QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVA  181 (292)
Q Consensus       104 ~--~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~  181 (292)
                      +  +.+|||+|||..|.+...-       .....+++.+++.|+.+++.||.|||   .++|+||||||+|+|++++|++
T Consensus       180 P~s~~~YlVley~s~G~v~w~p-------~d~~els~~~Ar~ylrDvv~GLEYLH---~QgiiHRDIKPsNLLl~~~g~V  249 (576)
T KOG0585|consen  180 PESDKLYLVLEYCSKGEVKWCP-------PDKPELSEQQARKYLRDVVLGLEYLH---YQGIIHRDIKPSNLLLSSDGTV  249 (576)
T ss_pred             cccCceEEEEEeccCCccccCC-------CCcccccHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEEcCCCcE
Confidence            4  5689999999998885444       23334999999999999999999999   9999999999999999999999


Q ss_pred             EEeecccccccCCC----CccchhhhhcccccccccccCCC---------------CeE--EEc-cchhhhhhccchhhh
Q 044211          182 KLFDFSFSISIPEG----ETHISELLSGLRAFDLARLNEDD---------------GYV--VLL-DHIKKYFEEDRLNEI  239 (292)
Q Consensus       182 kl~Dfg~a~~~~~~----~~~~~~~~~g~~~y~~~~~~~~~---------------Gvi--el~-~~~~~~~~~~~~~~~  239 (292)
                      ||+|||.+..+...    .........||+.|++|+.....               ||+  .++ |.. ||+.+ ...++
T Consensus       250 KIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~-PF~~~-~~~~l  327 (576)
T KOG0585|consen  250 KISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQL-PFFDD-FELEL  327 (576)
T ss_pred             EeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccC-Ccccc-hHHHH
Confidence            99999999877322    11123457899999888876541               888  455 654 45443 34555


Q ss_pred             cccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          240 IDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      .+..+......+..++....+.+||.++|.+||++|. ..+|....
T Consensus       328 ~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hp  373 (576)
T KOG0585|consen  328 FDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHP  373 (576)
T ss_pred             HHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhheecc
Confidence            6666665555555457788999999999999999999 88886554

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-34  Score=251.29  Aligned_cols=223  Identities=21%  Similarity=0.302  Sum_probs=187.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      -|+||.||-|....       +.+.||||.++-.   +.+....++.|+..|++++|||++.+-|||......|+|||||
T Consensus        36 HGSFGAVYfArd~~-------n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYC  108 (948)
T KOG0577|consen   36 HGSFGAVYFARDVR-------NSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYC  108 (948)
T ss_pred             CCccceeEEeeccC-------ccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHH
Confidence            79999999999876       8999999998654   3345678999999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      - ||-.+++..|      ..++.+..+..|+.+.+.||+|||   +.+.||||||+.|||+++.|.+||+|||.|....+
T Consensus       109 l-GSAsDlleVh------kKplqEvEIAAi~~gaL~gLaYLH---S~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~P  178 (948)
T KOG0577|consen  109 L-GSASDLLEVH------KKPLQEVEIAAITHGALQGLAYLH---SHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAP  178 (948)
T ss_pred             h-ccHHHHHHHH------hccchHHHHHHHHHHHHHHHHHHH---HhhHHhhhccccceEecCCCeeeeccccchhhcCc
Confidence            8 5999999655      467999999999999999999999   99999999999999999999999999999976643


Q ss_pred             CCccchhhhhcccccccccccC---------CC-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE---------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                           ..+++||+.|++|++.-         +.     |++  ||..+.+|.+.......++...-...+ .....+.+.
T Consensus       179 -----AnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesP-tLqs~eWS~  252 (948)
T KOG0577|consen  179 -----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESP-TLQSNEWSD  252 (948)
T ss_pred             -----hhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCC-CCCCchhHH
Confidence                 56689999997776543         33     777  788777888887766655543333333 233357888


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+.+++..||++-|.+|| +.++++.
T Consensus       253 ~F~~Fvd~CLqKipqeRptse~ll~H  278 (948)
T KOG0577|consen  253 YFRNFVDSCLQKIPQERPTSEELLKH  278 (948)
T ss_pred             HHHHHHHHHHhhCcccCCcHHHHhhc
Confidence            999999999999999999 9888764

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-34  Score=250.70  Aligned_cols=237  Identities=20%  Similarity=0.276  Sum_probs=186.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC-CCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE-SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|-||.||.|.+.. .+++  ..--||||+-+. +.+...+.|+.|.-+|+.++||||++++|+|.. ...|+|||.++-
T Consensus       399 ~GqFGdVy~gvYt~-~~kg--e~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e-~P~WivmEL~~~  474 (974)
T KOG4257|consen  399 EGQFGDVYKGVYTD-PEKG--ERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE-QPMWIVMELAPL  474 (974)
T ss_pred             CCcccceeeeEecc-cccC--cceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec-cceeEEEecccc
Confidence            89999999999852 0000  112489998776 455667889999999999999999999999975 468999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |-|..+++      .....++......++.|++.||.|||   +..++||||..+|||+.+...+||+|||+++.+..+.
T Consensus       475 GELr~yLq------~nk~sL~l~tL~ly~~Qi~talaYLe---SkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~  545 (974)
T KOG4257|consen  475 GELREYLQ------QNKDSLPLRTLTLYCYQICTALAYLE---SKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDA  545 (974)
T ss_pred             hhHHHHHH------hccccchHHHHHHHHHHHHHHHHHHH---hhchhhhhhhhhheeecCcceeeecccchhhhccccc
Confidence            99999994      44567899999999999999999999   9999999999999999999999999999999998777


Q ss_pred             ccchhhhhccccccccccc------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLN------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      +..++...-...|++|+-.      ..+     ||.  |++ -...||....+-. .+-. +......|.|+.||+.|+.
T Consensus       546 yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsD-VI~~-iEnGeRlP~P~nCPp~LYs  623 (974)
T KOG4257|consen  546 YYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSD-VIGH-IENGERLPCPPNCPPALYS  623 (974)
T ss_pred             hhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccc-eEEE-ecCCCCCCCCCCCChHHHH
Confidence            6665544445567766533      333     777  777 3334554433322 2222 2333333344699999999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      |+.+||.+||.+|| +.+|...|.++.+
T Consensus       624 lmskcWayeP~kRPrftei~~~lsdv~q  651 (974)
T KOG4257|consen  624 LMSKCWAYEPSKRPRFTEIKAILSDVLQ  651 (974)
T ss_pred             HHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence            99999999999999 9999999988764

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=1.2e-33  Score=236.82  Aligned_cols=228  Identities=18%  Similarity=0.251  Sum_probs=173.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||.|.+.        .+..||+|.+.... .....+.+|+.++++++||||+++++++......+++|||+.+|
T Consensus        14 ~G~~~~vy~~~~~--------~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd05113          14 TGQFGVVKYGKWR--------GQYDVAIKMIKEGS-MSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNG   84 (256)
T ss_pred             CcccceEEEEEec--------CCCcEEEEEcCCCc-ccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCC
Confidence            8999999999885        55679999987543 23467899999999999999999999999888899999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..      ....+++..++.++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||.+.....+..
T Consensus        85 ~l~~~i~~------~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~  155 (256)
T cd05113          85 CLLNYLRE------HGKRFQPSQLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEY  155 (256)
T ss_pred             cHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCCEEECCCccceecCCCce
Confidence            99999932      2336899999999999999999999   89999999999999999999999999999876654332


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|.+|+...      ++     |++  +|+. ...|+... ......+....+..... +...+..+.++
T Consensus       156 ~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~l  233 (256)
T cd05113         156 TSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERF-NNSETVEKVSQGLRLYR-PHLASEKVYAI  233 (256)
T ss_pred             eecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcC-CHHHHHHHHhcCCCCCC-CCCCCHHHHHH
Confidence            2222233456676666543      23     888  8773 44443221 11122222222222211 12446789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      +.+||+.||++|| +.+++..|+
T Consensus       234 i~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         234 MYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             HHHHcCCCcccCCCHHHHHHhhC
Confidence            9999999999999 999998764

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.1e-33  Score=256.80  Aligned_cols=230  Identities=18%  Similarity=0.202  Sum_probs=179.6

Q ss_pred             ccCCCeeEeeecCCCCccCccC-CeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQ-ERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....       + ++.||+|.+..........+.+|+.+++.++||||+++++++...+..++||||+++
T Consensus        77 ~G~~g~vy~a~~~~-------~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~g  149 (478)
T PTZ00267         77 RNPTTAAFVATRGS-------DPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSG  149 (478)
T ss_pred             eCCCcEEEEEEEcC-------CCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCCC
Confidence            89999999998754       5 678999987665555556788899999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++....   ....++++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++..+....
T Consensus       150 g~L~~~l~~~~---~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~  223 (478)
T PTZ00267        150 GDLNKQIKQRL---KEHLPFQEYEVGLLFYQIVLALDEVH---SRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSV  223 (478)
T ss_pred             CCHHHHHHHHH---hccCCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCcc
Confidence            99999884321   23457899999999999999999999   8999999999999999999999999999998765432


Q ss_pred             c-cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          197 T-HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       197 ~-~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      . .......||+.|++|++....           |++  +|+ |+. |+.. ......+...+.+..++. +..++..+.
T Consensus       224 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~-Pf~~-~~~~~~~~~~~~~~~~~~-~~~~s~~~~  300 (478)
T PTZ00267        224 SLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHR-PFKG-PSQREIMQQVLYGKYDPF-PCPVSSGMK  300 (478)
T ss_pred             ccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCC-CCCC-CCHHHHHHHHHhCCCCCC-CccCCHHHH
Confidence            2 223445689999888754322           888  888 543 3322 222333333333333221 135667899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +++.+||+.||++|| +.+++..
T Consensus       301 ~li~~~L~~dP~~Rps~~~~l~~  323 (478)
T PTZ00267        301 ALLDPLLSKNPALRPTTQQLLHT  323 (478)
T ss_pred             HHHHHHhccChhhCcCHHHHHhC
Confidence            999999999999999 9998753

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=3.6e-33  Score=234.89  Aligned_cols=237  Identities=17%  Similarity=0.233  Sum_probs=183.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.++..   .......+.+|+.++++++|+||+++++++...+..++++||+
T Consensus        12 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   84 (267)
T cd08224          12 KGQFSVVYKAICLL-------DGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVLELA   84 (267)
T ss_pred             cCCceEEEEEEEcC-------CCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEecC
Confidence            89999999999976       8899999988642   2333567899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|..++....   .....+++..+..++.+++.||.|||   +.+++|+||+|+||+++.++.++|+|||++.....
T Consensus        85 ~~~~L~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~  158 (267)
T cd08224          85 DAGDLSRMIKHFK---KQKRLIPERTIWKYFVQLCSALEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             CCCCHHHHHHHhc---ccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecCCcChhhEEECCCCcEEEeccceeeeccC
Confidence            9999999985332   23456899999999999999999999   89999999999999999999999999999876643


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      .... .....++..|.+|+....      +     |++  +|+ |+.+............+....+..++.+....+..+
T Consensus       159 ~~~~-~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (267)
T cd08224         159 KTTA-AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPLPADHYSEEL  237 (267)
T ss_pred             CCcc-cceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCCCCChhhcCHHH
Confidence            3211 223456777877775432      2     888  888 654322222222222222222222222223566789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      .+++.+||+.+|++|| +.+|++.|++++
T Consensus       238 ~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         238 RDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             HHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence            9999999999999999 999999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=2.1e-33  Score=235.79  Aligned_cols=231  Identities=15%  Similarity=0.248  Sum_probs=178.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        +++.||+|.+.... ...+.+.+|+.++++++|+||+++++++...+..++++||+++|
T Consensus        16 ~g~~g~v~~~~~~--------~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   86 (261)
T cd05072          16 AGQFGEVWMGYYN--------NSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKG   86 (261)
T ss_pred             CcCCceEEEEEec--------CCceEEEEEccCCc-hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCCC
Confidence            8999999999986        77889999987542 23567899999999999999999999999988999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...     ....+++..++.++.|++.||+|||   ..+++|+||+|+||+++.++.++|+|||++........
T Consensus        87 ~L~~~l~~~-----~~~~~~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~  158 (261)
T cd05072          87 SLLDFLKSD-----EGGKVLLPKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEY  158 (261)
T ss_pred             cHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEecCCCcEEECCCccceecCCCce
Confidence            999999432     2456888899999999999999999   89999999999999999999999999999987654333


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|++|++..      ++     |++  +|+ +...|+..... ...... +......+....++..+.++
T Consensus       159 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l  236 (261)
T cd05072         159 TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSN-SDVMSA-LQRGYRMPRMENCPDELYDI  236 (261)
T ss_pred             eccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCH-HHHHHH-HHcCCCCCCCCCCCHHHHHH
Confidence            2222334456677776532      22     888  777 35544433211 111111 11111222223566789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +.+||+.+|++|| +.++.+.|+++
T Consensus       237 i~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         237 MKTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             HHHHccCCcccCcCHHHHHHHHhcC
Confidence            9999999999999 99999999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.3e-35  Score=227.58  Aligned_cols=244  Identities=19%  Similarity=0.238  Sum_probs=194.5

Q ss_pred             CCCCccccccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCC
Q 044211           18 GKYNPIRSFCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRC   93 (292)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~n   93 (292)
                      ........++.++++--... .|-||.||.|..++       ++-.||+|++-+.   ......++.+|+++-+.|+|||
T Consensus        11 ~~~~~~~~~~l~dfeigr~LgkgkFG~vYlarekk-------s~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpn   83 (281)
T KOG0580|consen   11 FGSRATKTWTLDDFEIGRPLGKGKFGNVYLAREKK-------SLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPN   83 (281)
T ss_pred             cccccccccchhhccccccccCCccccEeEeeecc-------CCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCcc
Confidence            33445556776666554443 89999999999987       8889999998543   2233467899999999999999


Q ss_pred             ccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044211           94 IFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNI  173 (292)
Q Consensus        94 iv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~ni  173 (292)
                      |++++++|.+....|+++||...|++...++     ......+++.....++.|+|.|+.|+|   .++++||||||+|+
T Consensus        84 ilrlY~~fhd~~riyLilEya~~gel~k~L~-----~~~~~~f~e~~~a~Yi~q~A~Al~y~h---~k~VIhRdiKpenl  155 (281)
T KOG0580|consen   84 ILRLYGYFHDSKRIYLILEYAPRGELYKDLQ-----EGRMKRFDEQRAATYIKQLANALLYCH---LKRVIHRDIKPENL  155 (281)
T ss_pred             HHhhhhheeccceeEEEEEecCCchHHHHHH-----hcccccccccchhHHHHHHHHHHHHhc---cCCcccCCCCHHHh
Confidence            9999999999999999999999999999993     124566889999999999999999999   99999999999999


Q ss_pred             EecCCCceEEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhh
Q 044211          174 LFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEI  239 (292)
Q Consensus       174 li~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~  239 (292)
                      |++..+.+||+|||.+..-..   ....+.+||..|.+||.....           |++  |++ |.+ | ++.....+.
T Consensus       156 Llg~~~~lkiAdfGwsV~~p~---~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~p-p-Fes~~~~et  230 (281)
T KOG0580|consen  156 LLGSAGELKIADFGWSVHAPS---NKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLP-P-FESQSHSET  230 (281)
T ss_pred             ccCCCCCeeccCCCceeecCC---CCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCC-c-hhhhhhHHH
Confidence            999999999999999986642   335678999999888776543           888  777 644 3 333334444


Q ss_pred             cccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          240 IDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.....-....+  ...+....++|.+|+.++|.+|. ..|++..
T Consensus       231 YkrI~k~~~~~p--~~is~~a~dlI~~ll~~~p~~r~~l~~v~~h  273 (281)
T KOG0580|consen  231 YKRIRKVDLKFP--STISGGAADLISRLLVKNPIERLALTEVMDH  273 (281)
T ss_pred             HHHHHHccccCC--cccChhHHHHHHHHhccCccccccHHHHhhh
Confidence            444444333333  26677899999999999999999 9998865

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=2.1e-33  Score=234.51  Aligned_cols=229  Identities=21%  Similarity=0.277  Sum_probs=173.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||+|.+... .......+.+|+.++++++||||+++++++......++|+||+.+
T Consensus         5 ~g~~g~vy~~~~~~-------~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   77 (252)
T cd05084           5 RGNFGEVFSGRLRA-------DNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQG   77 (252)
T ss_pred             cccCccEEEEEEec-------CCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccC
Confidence            69999999999865       8899999987654 233456799999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++.      .....+++..++.++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++.......
T Consensus        78 ~~L~~~~~------~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~  148 (252)
T cd05084          78 GDFLTFLR------TEGPRLKVKELIQMVENAAAGMEYLE---SKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGV  148 (252)
T ss_pred             CcHHHHHH------hCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEEcCCCcEEECccccCccccccc
Confidence            99999993      22346889999999999999999999   8999999999999999999999999999987654321


Q ss_pred             ccch-hhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc--chhhhcccccccCCCCCCchHHHHH
Q 044211          197 THIS-ELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED--RLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       197 ~~~~-~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... .....+..|.+|+.....           |++  ||+ +...|+....  .....+....    ....+..++..
T Consensus       149 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  224 (252)
T cd05084         149 YASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGV----RLPCPELCPDA  224 (252)
T ss_pred             ccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHcCC----CCCCcccCCHH
Confidence            1111 111223457777754322           888  777 3444442211  1111111111    11112355778


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      +.+++.+||+.+|++|| +.++.+.|++
T Consensus       225 ~~~li~~~l~~~p~~Rps~~~~~~~l~~  252 (252)
T cd05084         225 VYRLMERCWEYDPGQRPSFSTVHQELQS  252 (252)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHhC
Confidence            99999999999999999 9999999863

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-33  Score=235.40  Aligned_cols=231  Identities=19%  Similarity=0.258  Sum_probs=177.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        .++.||+|.++... ...+.+.+|+.++++++|+||+++++++...+..++++||+.++
T Consensus        16 ~g~~~~v~~~~~~--------~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   86 (261)
T cd05068          16 AGQFGEVWEGLWN--------NTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYG   86 (261)
T ss_pred             ccCCccEEEEEec--------CCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecccCC
Confidence            8999999999986        77889999987653 23567899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...     ....+++..+..++.|++.|+.|||   ..+++|+||+|+||++++++.++|+|||++........
T Consensus        87 ~L~~~~~~~-----~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~  158 (261)
T cd05068          87 SLLEYLQGG-----AGRALKLPQLIDMAAQVASGMAYLE---AQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIY  158 (261)
T ss_pred             cHHHHHhcc-----CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcc
Confidence            999999321     2356899999999999999999999   89999999999999999999999999999987753322


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      ........+..|++|++..      ++     |++  ||+ +...|+.... .......... ....+.+..++..+.++
T Consensus       159 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l  236 (261)
T cd05068         159 EAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMT-NAEVLQQVDQ-GYRMPCPPGCPKELYDI  236 (261)
T ss_pred             cccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHc-CCCCCCCCcCCHHHHHH
Confidence            2111122234677777543      23     888  777 3554443322 1111111111 11111223567789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +.+||+.+|++|| +.++++.|+++
T Consensus       237 i~~~l~~~P~~Rp~~~~l~~~l~~~  261 (261)
T cd05068         237 MLDCWKEDPDDRPTFETLQWKLEDF  261 (261)
T ss_pred             HHHHhhcCcccCCCHHHHHHHHhcC
Confidence            9999999999999 99999999864

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.5e-33  Score=246.99  Aligned_cols=234  Identities=18%  Similarity=0.204  Sum_probs=176.8

Q ss_pred             ccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeec
Q 044211           26 FCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLE  103 (292)
Q Consensus        26 ~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~  103 (292)
                      ..+++++..... .|+||.||+|.+..       +++.||+|.+.... ......+.+|+.++++++|+||+++++++..
T Consensus        71 ~~~~~~~~~~~lg~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  143 (353)
T PLN00034         71 KSLSELERVNRIGSGAGGTVYKVIHRP-------TGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDH  143 (353)
T ss_pred             CCHHHHhhhhhccCCCCeEEEEEEECC-------CCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEecc
Confidence            345555554444 99999999999865       78999999986543 2344678999999999999999999999999


Q ss_pred             CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEE
Q 044211          104 TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKL  183 (292)
Q Consensus       104 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl  183 (292)
                      .+..++|+||+++|+|.+..           ...+..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||
T Consensus       144 ~~~~~lv~e~~~~~~L~~~~-----------~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL  209 (353)
T PLN00034        144 NGEIQVLLEFMDGGSLEGTH-----------IADEQFLADVARQILSGIAYLH---RRHIVHRDIKPSNLLINSAKNVKI  209 (353)
T ss_pred             CCeEEEEEecCCCCcccccc-----------cCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEE
Confidence            99999999999999986433           3567788899999999999999   899999999999999999999999


Q ss_pred             eecccccccCCCCccchhhhhcccccccccccC-----------CC-----CeE--EEc-cchhhhhh--ccchhhhccc
Q 044211          184 FDFSFSISIPEGETHISELLSGLRAFDLARLNE-----------DD-----GYV--VLL-DHIKKYFE--EDRLNEIIDP  242 (292)
Q Consensus       184 ~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~-~~~~~~~~--~~~~~~~~~~  242 (292)
                      +|||++..+.... .......|+..|+++|...           ++     |++  ||+ |+. ++..  ..........
T Consensus       210 ~DfG~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~-pf~~~~~~~~~~~~~~  287 (353)
T PLN00034        210 ADFGVSRILAQTM-DPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRF-PFGVGRQGDWASLMCA  287 (353)
T ss_pred             cccccceeccccc-ccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCC-CCCCCCCccHHHHHHH
Confidence            9999998764322 1223456889998888641           22     888  888 554 3321  1111111111


Q ss_pred             ccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          243 LIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ...... ...+..++..+.+|+.+||+.||++|| +.|+++.
T Consensus       288 ~~~~~~-~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        288 ICMSQP-PEAPATASREFRHFISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             HhccCC-CCCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            111111 111235677899999999999999999 9999875

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=1.4e-33  Score=236.70  Aligned_cols=231  Identities=19%  Similarity=0.267  Sum_probs=180.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||+|.+.        .+..+++|.+..........+.+|+.+++.++|+||+++++++......++||||+++|
T Consensus        16 ~g~~~~vy~~~~~--------~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (261)
T cd05148          16 SGYFGEVWEGLWK--------NRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKG   87 (261)
T ss_pred             cCCCccEEEeEec--------CCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccC
Confidence            8999999999997        78899999998765555678999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.++++.     .....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++........
T Consensus        88 ~L~~~~~~-----~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~  159 (261)
T cd05148          88 SLLAFLRS-----PEGQVLPVASLIDMACQVAEGMAYLE---EQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVY  159 (261)
T ss_pred             CHHHHHhc-----CCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccCcceEEEcCCceEEEccccchhhcCCccc
Confidence            99999932     13456899999999999999999999   89999999999999999999999999999987643322


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      . .....++..|.+|+...      ++     |++  +|+ ++..|+... ...+.+.....+ ...+.+..++..+.++
T Consensus       160 ~-~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  236 (261)
T cd05148         160 L-SSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGM-NNHEVYDQITAG-YRMPCPAKCPQEIYKI  236 (261)
T ss_pred             c-ccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcC-CHHHHHHHHHhC-CcCCCCCCCCHHHHHH
Confidence            1 12233455676665432      22     877  777 344444332 222222222222 1122224677889999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +.+||+.||.+|| +.++++.|+.+
T Consensus       237 i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         237 MLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             HHHHcCCCchhCcCHHHHHHHHhcC
Confidence            9999999999999 99999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=3.4e-33  Score=247.55  Aligned_cols=245  Identities=15%  Similarity=0.169  Sum_probs=178.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.++..  .....+..||+|.++.... .....+.+|+.++.++. ||||+++++++...+..++|+||++
T Consensus        47 ~G~fG~Vy~~~~~~~--~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~~iv~E~~~  124 (401)
T cd05107          47 SGAFGRVVEATAHGL--SHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIITEYCR  124 (401)
T ss_pred             CCCceeEEEEEEcCC--CCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCcEEEEeccC
Confidence            899999999986310  0111456899999976432 33457889999999997 9999999999999889999999999


Q ss_pred             CCChhHHhhhhCCC------------------------------------------------------------------
Q 044211          116 CGSLADRIRIHHTP------------------------------------------------------------------  129 (292)
Q Consensus       116 ~gsL~~~l~~~~~~------------------------------------------------------------------  129 (292)
                      +|+|.+++.+....                                                                  
T Consensus       125 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (401)
T cd05107         125 YGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKYADI  204 (401)
T ss_pred             CCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhhhhhh
Confidence            99999999643210                                                                  


Q ss_pred             -------------------------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          130 -------------------------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       130 -------------------------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                                               ......+++..++.++.|++.||.|||   ..+++|+||||+|||+++++.+||+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrdlkp~NiLl~~~~~~kL~  281 (401)
T cd05107         205 ESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLA---SKNCVHRDLAARNVLICEGKLVKIC  281 (401)
T ss_pred             hccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHh---cCCcCcccCCcceEEEeCCCEEEEE
Confidence                                     012235677888999999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCCc-cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCC
Q 044211          185 DFSFSISIPEGET-HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRS  249 (292)
Q Consensus       185 Dfg~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~  249 (292)
                      |||++........ .......++..|++++.....           |++  ||+ ....|+...............+. .
T Consensus       282 DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~~-~  360 (401)
T cd05107         282 DFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGY-R  360 (401)
T ss_pred             ecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHcCC-C
Confidence            9999986543221 112233456778777654322           888  777 34434322211111111111111 1


Q ss_pred             CCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          250 CSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       250 ~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      +..+..++..+.+++.+||+.+|.+|| +.+|++.|+.+.
T Consensus       361 ~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~  400 (401)
T cd05107         361 MAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL  400 (401)
T ss_pred             CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence            112235677899999999999999999 999999999874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=1.6e-33  Score=244.23  Aligned_cols=224  Identities=14%  Similarity=0.210  Sum_probs=175.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.+...   .......+.+|+.+++.++||||+++++++...+..++||||+
T Consensus         5 ~G~~g~Vy~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~   77 (328)
T cd05593           5 KGTFGKVILVREKA-------SGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYV   77 (328)
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCC
Confidence            79999999999865       8899999998753   2234467889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+.+.       ....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++.....
T Consensus        78 ~~g~L~~~l~-------~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~  147 (328)
T cd05593          78 NGGELFFHLS-------RERVFSEDRTRFYGAEIVSALDYLH---SGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGIT  147 (328)
T ss_pred             CCCCHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeEECCCCcEEEecCcCCccCCC
Confidence            9999998883       3456899999999999999999999   89999999999999999999999999999875432


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ... ......|++.|++||....      +     |++  +|+ |+. |+... ................+  ...++.+
T Consensus       148 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~-Pf~~~-~~~~~~~~~~~~~~~~p--~~~~~~~  222 (328)
T cd05593         148 DAA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL-PFYNQ-DHEKLFELILMEDIKFP--RTLSADA  222 (328)
T ss_pred             ccc-ccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCC-CCCCC-CHHHHHHHhccCCccCC--CCCCHHH
Confidence            221 1234568999988886532      2     888  888 544 43322 22223333333333322  2566789


Q ss_pred             HHHHhHhcCCCCCCC-----C-HHHHHHH
Q 044211          261 AHLIFECVNESPVDR-----P-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~R-----P-~~el~~~  283 (292)
                      .+++.+||+.||++|     | +.++++.
T Consensus       223 ~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         223 KSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             HHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence            999999999999999     4 6676643

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=3.4e-33  Score=238.01  Aligned_cols=246  Identities=19%  Similarity=0.222  Sum_probs=183.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++.....  ....++..+|+|.+..........+.+|+.++++++||||+++++++...+..++|+||++++
T Consensus        15 ~G~~~~v~~~~~~~~--~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   92 (288)
T cd05093          15 EGAFGKVFLAECYNL--CPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHG   92 (288)
T ss_pred             CcCCeeEEeeEeccC--CCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCC
Confidence            899999999975210  001145679999987765555677999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCC------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          118 SLADRIRIHHTP------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       118 sL~~~l~~~~~~------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      +|.+++..++..      ......+++..+..++.|++.||.|||   +.+++|+||||+||++++++.++|+|||++..
T Consensus        93 ~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~  169 (288)
T cd05093          93 DLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKIGDFGMSRD  169 (288)
T ss_pred             CHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCCcEEeccCCcccc
Confidence            999999644311      123346899999999999999999999   89999999999999999999999999999986


Q ss_pred             cCCCCcc-chhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHH
Q 044211          192 IPEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQ  256 (292)
Q Consensus       192 ~~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (292)
                      ....... ......++..|++|+...      ++     |++  +|+ +...|+... ...........+.... .+..+
T Consensus       170 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~-~~~~~~~~i~~~~~~~-~~~~~  247 (288)
T cd05093         170 VYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL-SNNEVIECITQGRVLQ-RPRTC  247 (288)
T ss_pred             ccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHcCCcCC-CCCCC
Confidence            6433221 122233466787777543      22     888  887 355444332 2222222222222211 11245


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +..+.+++.+||+.||.+|| +.++.+.|+.+...
T Consensus       248 ~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~  282 (288)
T cd05093         248 PKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKA  282 (288)
T ss_pred             CHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence            67899999999999999999 99999999998764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=3.8e-33  Score=234.90  Aligned_cols=235  Identities=18%  Similarity=0.227  Sum_probs=175.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..    ...+...||+|.++... ......+.+|+..+++++||||+++++++...+..++++||+++
T Consensus        14 ~g~~g~vy~~~~~~----~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~   89 (266)
T cd05033          14 GGEFGEVCRGRLKL----PGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMEN   89 (266)
T ss_pred             CCccceEEEEEEcc----CCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEEEEcCCC
Confidence            89999999999852    00134689999987543 33445788999999999999999999999998899999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++..      ....+++..+..++.|++.|+.|||   +.+++|+||+|+||++++++.++|+|||++.......
T Consensus        90 ~~L~~~~~~------~~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~  160 (266)
T cd05033          90 GSLDKFLRE------NDGKFTVGQLVGMLRGIASGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSE  160 (266)
T ss_pred             CCHHHHHHh------ccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCCEEECccchhhcccccc
Confidence            999999932      2347899999999999999999999   8999999999999999999999999999998775221


Q ss_pred             -ccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          197 -THISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       197 -~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                       ........++..|++|+...      ++     |++  +|+ ....|+... ......+....+.. .+.+..++..+.
T Consensus       161 ~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~l~  238 (266)
T cd05033         161 ATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDM-SNQDVIKAVEDGYR-LPPPMDCPSALY  238 (266)
T ss_pred             cceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHHcCCC-CCCCCCCCHHHH
Confidence             11112223345676666543      22     877  765 233333222 22222222221111 112235677899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          262 HLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +++.+||+.+|++|| +.++++.|+++
T Consensus       239 ~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         239 QLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             HHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            999999999999999 99999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=3.8e-33  Score=234.87  Aligned_cols=236  Identities=18%  Similarity=0.245  Sum_probs=181.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.|++|.+...   .......+.+|+.+++.++|+||+++++++...+..++++||+
T Consensus        12 ~g~~g~v~~~~~~~-------~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~   84 (267)
T cd08229          12 RGQFSEVYRATCLL-------DGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELA   84 (267)
T ss_pred             ccCCeEEEEEeecC-------CCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEec
Confidence            89999999999765       8899999987643   2233457889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.++++...   .....+++..++.++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++.....
T Consensus        85 ~~~~L~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd08229          85 DAGDLSRMIKHFK---KQKRLIPEKTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             CCCCHHHHHHHhh---ccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEECcchhhhcccc
Confidence            9999999985322   23457899999999999999999999   89999999999999999999999999999876643


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhc-cchhhhcccccccCCCCCCchHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEE-DRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ... ......++..|++|+....      +     |++  +|+ |.. |+... ...............+.......+..
T Consensus       159 ~~~-~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (267)
T cd08229         159 KTT-AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQS-PFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEE  236 (267)
T ss_pred             CCc-ccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCC-CcccccchHHHHhhhhhcCCCCCCCcccccHH
Confidence            322 1223456777877765422      2     888  888 544 33222 11222222222222222222356778


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      +.+++.+||+.||++|| +.+|++.++++.
T Consensus       237 ~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         237 LRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             HHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence            99999999999999999 999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=3.4e-33  Score=241.99  Aligned_cols=224  Identities=15%  Similarity=0.210  Sum_probs=172.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.++..   .......+.+|+.++..++||||+++++++...+..++||||+
T Consensus         5 ~G~~g~V~~~~~~~-------~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~   77 (325)
T cd05594           5 KGTFGKVILVKEKA-------TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYA   77 (325)
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCC
Confidence            79999999999865       8899999998753   2233456788999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP-RPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      ++|+|..++.       ....+++..+..++.|++.||.|||   + .+++||||||+|||++.++.+||+|||++....
T Consensus        78 ~~~~L~~~l~-------~~~~l~~~~~~~~~~qi~~aL~~lH---~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~  147 (325)
T cd05594          78 NGGELFFHLS-------RERVFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGI  147 (325)
T ss_pred             CCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hcCCEEecCCCCCeEEECCCCCEEEecCCCCeecC
Confidence            9999998882       3456899999999999999999999   6 799999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......|+..|++||+...      +     |++  +|+ |.. |+... ................+  ...++.
T Consensus       148 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~-Pf~~~-~~~~~~~~i~~~~~~~p--~~~~~~  222 (325)
T cd05594         148 KDGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL-PFYNQ-DHEKLFELILMEEIRFP--RTLSPE  222 (325)
T ss_pred             CCCc-ccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCC-CCCCC-CHHHHHHHHhcCCCCCC--CCCCHH
Confidence            2221 1233568899988876432      2     888  888 544 43322 22222222222222222  245678


Q ss_pred             HHHHHhHhcCCCCCCC-----C-HHHHHHH
Q 044211          260 FAHLIFECVNESPVDR-----P-MVDVAKK  283 (292)
Q Consensus       260 l~~li~~Cl~~dP~~R-----P-~~el~~~  283 (292)
                      +.+++.+||+.||++|     | +.++++.
T Consensus       223 ~~~li~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         223 AKSLLSGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             HHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence            9999999999999999     5 6777643

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=2.9e-33  Score=243.06  Aligned_cols=226  Identities=19%  Similarity=0.232  Sum_probs=174.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||++.+..       ++..||+|.+... .......+.+|++++++++||||+++++++...+..++||||+++
T Consensus        15 ~G~~g~V~~~~~~~-------~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   87 (331)
T cd06649          15 AGNGGVVTKVQHKP-------SGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDG   87 (331)
T ss_pred             CCCCEEEEEEEECC-------CCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeecCCC
Confidence            89999999999876       8899999998764 233456799999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR-PVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~-~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      |+|.+++.       ....+++..+..++.|++.||.|||   .. +++|+||||+|||++.++.+||+|||++......
T Consensus        88 ~~L~~~l~-------~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  157 (331)
T cd06649          88 GSLDQVLK-------EAKRIPEEILGKVSIAVLRGLAYLR---EKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  157 (331)
T ss_pred             CcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHh---hcCCEEcCCCChhhEEEcCCCcEEEccCccccccccc
Confidence            99999993       3346889999999999999999999   54 6999999999999999999999999998766432


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc--chhhhc-------------------
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED--RLNEII-------------------  240 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~--~~~~~~-------------------  240 (292)
                      .   .....|+..|++||+....           |++  ||+ |+. |+....  .....+                   
T Consensus       158 ~---~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (331)
T cd06649         158 M---ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRY-PIPPPDAKELEAIFGRPVVDGEEGEPHSISPRP  233 (331)
T ss_pred             c---cccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHhcccccccccCCccccCccc
Confidence            2   2334688899888765432           888  888 654 221110  000000                   


Q ss_pred             ------------------------ccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          241 ------------------------DPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       241 ------------------------~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                                              +......++.......++++.+|+.+||+.||++|| +.++++.-
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~  302 (331)
T cd06649         234 RPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHT  302 (331)
T ss_pred             ccccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcCh
Confidence                                    000111111111124567899999999999999999 99998763

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=9.4e-34  Score=245.89  Aligned_cols=215  Identities=14%  Similarity=0.216  Sum_probs=169.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.++..   .....+.+.+|+.++++++||||+++++++...+..++||||+
T Consensus        28 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  100 (329)
T PTZ00263         28 TGSFGRVRIAKHKG-------TGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFV  100 (329)
T ss_pred             ecCCeEEEEEEECC-------CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCC
Confidence            89999999999975       8899999998643   2234467889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+|+|.+++.       ....+++..+..++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||++.....
T Consensus       101 ~~~~L~~~l~-------~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~  170 (329)
T PTZ00263        101 VGGELFTHLR-------KAGRFPNDVAKFYHAELVLAFEYLH---SKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPD  170 (329)
T ss_pred             CCChHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEECCCCCEEEeeccCceEcCC
Confidence            9999999993       3456888999999999999999999   89999999999999999999999999999987643


Q ss_pred             CCccchhhhhcccccccccccC------CC-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      ..    ....|++.|++||+..      ++     |++  +|+....|+.... ..........+....+.  ..+..+.
T Consensus       171 ~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~-~~~~~~~i~~~~~~~p~--~~~~~~~  243 (329)
T PTZ00263        171 RT----FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDT-PFRIYEKILAGRLKFPN--WFDGRAR  243 (329)
T ss_pred             Cc----ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCC-HHHHHHHHhcCCcCCCC--CCCHHHH
Confidence            32    2346888898887543      22     888  8883333443322 22222222223222222  3556789


Q ss_pred             HHHhHhcCCCCCCCC
Q 044211          262 HLIFECVNESPVDRP  276 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP  276 (292)
                      +|+.+||+.||.+||
T Consensus       244 ~li~~~L~~dP~~R~  258 (329)
T PTZ00263        244 DLVKGLLQTDHTKRL  258 (329)
T ss_pred             HHHHHHhhcCHHHcC
Confidence            999999999999998

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=2.6e-33  Score=241.83  Aligned_cols=238  Identities=17%  Similarity=0.222  Sum_probs=173.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..   .+......||+|.++... ....+++.+|+.+++.++||||++++|++... ..++++||+++
T Consensus        17 ~G~~g~Vy~~~~~~---~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~v~e~~~~   92 (316)
T cd05108          17 SGAFGTVYKGLWIP---EGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQLMPF   92 (316)
T ss_pred             cCCCceEEEEEEec---CCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-CceeeeecCCC
Confidence            89999999998743   000122349999987543 34456789999999999999999999999764 57899999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++..      ....+++..++.++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||++.......
T Consensus        93 g~l~~~l~~------~~~~~~~~~~~~~~~qi~~~L~~LH---~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~  163 (316)
T cd05108          93 GCLLDYVRE------HKDNIGSQYLLNWCVQIAKGMNYLE---ERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADE  163 (316)
T ss_pred             CCHHHHHHh------ccccCCHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEecCCCcEEEccccccccccCCC
Confidence            999999942      2345888899999999999999999   8999999999999999999999999999998775433


Q ss_pred             ccc-hhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          197 THI-SELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       197 ~~~-~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      ... .....++..|++++....      +     |++  ||+. ...|+. .....++.. .+......+.+..++..+.
T Consensus       164 ~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  241 (316)
T cd05108         164 KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD-GIPASEISS-ILEKGERLPQPPICTIDVY  241 (316)
T ss_pred             cceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCC-CCCHHHHHH-HHhCCCCCCCCCCCCHHHH
Confidence            221 112223556777765432      2     887  7662 333332 212111111 1111111111235667899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          262 HLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +++.+||+.||++|| +.+++..|..+..+
T Consensus       242 ~li~~cl~~~p~~Rps~~~l~~~l~~~~~~  271 (316)
T cd05108         242 MIMVKCWMIDADSRPKFRELIIEFSKMARD  271 (316)
T ss_pred             HHHHHHccCChhhCcCHHHHHHHHHHHHcC
Confidence            999999999999999 99999999887653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-33  Score=254.71  Aligned_cols=235  Identities=19%  Similarity=0.236  Sum_probs=183.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeee-eec---C---CcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGC-CLE---T---QIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~-~~~---~---~~~~l  109 (292)
                      +|||+.||.|....       .+..||+|.+-..+....+.+.+|+++|+.|. |+|||.+++. ...   .   -+.++
T Consensus        47 EGGFa~VYla~~~~-------~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~Evll  119 (738)
T KOG1989|consen   47 EGGFAQVYLAQDVK-------GGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLL  119 (738)
T ss_pred             cCCcEEEEEEEecC-------CCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEe
Confidence            99999999999973       44999999986666667788999999999996 9999999994 322   1   24678


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      +||||.+|+|-+++.+..     ...|++.++++|+.++|.|+.+||.. ..+|||||||.+||||+.+|..||||||.+
T Consensus       120 LmEyC~gg~Lvd~mn~Rl-----q~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSa  193 (738)
T KOG1989|consen  120 LMEYCKGGSLVDFMNTRL-----QTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSA  193 (738)
T ss_pred             ehhhccCCcHHHHHHHHH-----hccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCccccc
Confidence            999999999999995432     23399999999999999999999944 567999999999999999999999999998


Q ss_pred             cccCCCCccch--------hhhhccccccccccc---------CCC-----CeE-EEc-cchhhhhhccchhhhcccccc
Q 044211          190 ISIPEGETHIS--------ELLSGLRAFDLARLN---------EDD-----GYV-VLL-DHIKKYFEEDRLNEIIDPLIM  245 (292)
Q Consensus       190 ~~~~~~~~~~~--------~~~~g~~~y~~~~~~---------~~~-----Gvi-el~-~~~~~~~~~~~~~~~~~~~~~  245 (292)
                      ...........        -....|+.|.+||..         +|+     ||+ +-+ -...||.+.+.+     .++.
T Consensus       194 tt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~l-----aIln  268 (738)
T KOG1989|consen  194 TTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKL-----AILN  268 (738)
T ss_pred             ccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcce-----eEEe
Confidence            75432221111        113357777666543         344     777 444 333455444332     3467


Q ss_pred             cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          246 GDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       246 ~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +.+..|+.+..+..+.+||..||+.||++|| +.+++..+.+|...
T Consensus       269 g~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~  314 (738)
T KOG1989|consen  269 GNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANK  314 (738)
T ss_pred             ccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcC
Confidence            7777777679999999999999999999999 99999999887653

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-33  Score=235.87  Aligned_cols=233  Identities=18%  Similarity=0.245  Sum_probs=182.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc--CCCCccceeeeeecCC----cceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM--IHRCIFKLIGCCLETQ----IPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l--~h~niv~~~~~~~~~~----~~~lv~  111 (292)
                      +|.||.||+|.|         .|+.||||++.....   ..+.+|.++++++  +|+||+.|++.-..++    ++|+|+
T Consensus       221 kGRyGEVwrG~w---------rGe~VAVKiF~srdE---~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvT  288 (513)
T KOG2052|consen  221 KGRFGEVWRGRW---------RGEDVAVKIFSSRDE---RSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVT  288 (513)
T ss_pred             Cccccceeeccc---------cCCceEEEEecccch---hhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEee
Confidence            999999999999         899999999986643   4477889988875  9999999998876543    589999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhc-----CCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHV-----GFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~-----~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      +|.+.|||.|++        .+.+++....++++..+|+||+|||.     +....|.|||||..|||+.+++.+-|+|+
T Consensus       289 dYHe~GSL~DyL--------~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADL  360 (513)
T KOG2052|consen  289 DYHEHGSLYDYL--------NRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  360 (513)
T ss_pred             ecccCCcHHHHH--------hhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeec
Confidence            999999999999        45789999999999999999999993     34668999999999999999999999999


Q ss_pred             ccccccCCCCc---cchhhhhcccccccccccCCC-----------------CeE--EEccch----------hhhhhcc
Q 044211          187 SFSISIPEGET---HISELLSGLRAFDLARLNEDD-----------------GYV--VLLDHI----------KKYFEED  234 (292)
Q Consensus       187 g~a~~~~~~~~---~~~~~~~g~~~y~~~~~~~~~-----------------Gvi--el~~~~----------~~~~~~~  234 (292)
                      |+|....++..   -..+..+||.+||+||+.+.+                 |.|  |+.-+.          .||++..
T Consensus       361 GLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~V  440 (513)
T KOG2052|consen  361 GLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVV  440 (513)
T ss_pred             eeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCC
Confidence            99987754421   124678999999999999877                 555  433221          3333311


Q ss_pred             ----chhhhcc----cccccCCCC-CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          235 ----RLNEIID----PLIMGDRSC-SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       235 ----~~~~~~~----~~~~~~~~~-~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                          +..+..+    ..+.+..|. ....++...+.+||..||..||..|- +-.|-+.|.++.+.
T Consensus       441 p~DPs~eeMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~~  506 (513)
T KOG2052|consen  441 PSDPSFEEMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSNS  506 (513)
T ss_pred             CCCCCHHHHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhcC
Confidence                1111111    122222221 12257788899999999999999999 99999999888743

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.3e-33  Score=233.32  Aligned_cols=227  Identities=19%  Similarity=0.272  Sum_probs=172.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++.+.        .+..+|+|.+.... .....+.+|+.+++.++|+||+++++++...+..++|+||++++
T Consensus        14 ~G~~~~v~~~~~~--------~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd05059          14 SGQFGVVHLGKWR--------GKIDVAIKMIREGA-MSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANG   84 (256)
T ss_pred             cCCCceEEEeEec--------CCccEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCC
Confidence            8999999999986        67789999986542 23456889999999999999999999999888999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..      ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++........
T Consensus        85 ~L~~~l~~------~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~  155 (256)
T cd05059          85 CLLNYLRE------RKGKLGTEWLLDMCSDVCEAMEYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQY  155 (256)
T ss_pred             CHHHHHHh------cccCCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHhhEEECCCCcEEECCcccceecccccc
Confidence            99999942      2346899999999999999999999   89999999999999999999999999999976644332


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|.+|+...      ++     |++  +++ +...|+.... ........... .....+..++..+.++
T Consensus       156 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l  233 (256)
T cd05059         156 TSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFS-NSEVVESVSAG-YRLYRPKLAPTEVYTI  233 (256)
T ss_pred             cccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCC-HHHHHHHHHcC-CcCCCCCCCCHHHHHH
Confidence            2222222344676666543      22     887  777 4454443221 12222211111 1111113567789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      +.+||+.+|++|| +.++++.|
T Consensus       234 i~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         234 MYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             HHHHhcCChhhCcCHHHHHHHh
Confidence            9999999999999 99999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=3.3e-33  Score=247.66  Aligned_cols=246  Identities=15%  Similarity=0.172  Sum_probs=178.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+....  ....+..||+|.++.... ...+.+.+|+.+++++. ||||+++++++...+..++||||++
T Consensus        47 ~G~fG~Vy~~~~~~~~--~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~  124 (400)
T cd05105          47 SGAFGKVVEGTAYGLS--RSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCF  124 (400)
T ss_pred             CCCCceEEEEEEcccC--CCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCceEEEEEecC
Confidence            9999999999863100  001345799999975433 33467899999999996 9999999999999999999999999


Q ss_pred             CCChhHHhhhhCCC------------------------------------------------------------------
Q 044211          116 CGSLADRIRIHHTP------------------------------------------------------------------  129 (292)
Q Consensus       116 ~gsL~~~l~~~~~~------------------------------------------------------------------  129 (292)
                      +|+|.+++......                                                                  
T Consensus       125 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (400)
T cd05105         125 YGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYSDIQ  204 (400)
T ss_pred             CCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhhhhhcc
Confidence            99999998542110                                                                  


Q ss_pred             -----------------------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          130 -----------------------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       130 -----------------------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                                             ......+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+||
T Consensus       205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dikp~Nill~~~~~~kL~Df  281 (400)
T cd05105         205 RSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLA---SKNCVHRDLAARNVLLAQGKIVKICDF  281 (400)
T ss_pred             cCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHhEEEeCCCEEEEEeC
Confidence                                   001235788889999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCcc-chhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          187 SFSISIPEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       187 g~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      |++......... ......++..|++|+...      ++     |++  ||+ ....|+............ +.......
T Consensus       282 Gla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~-~~~~~~~~  360 (400)
T cd05105         282 GLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNK-IKSGYRMA  360 (400)
T ss_pred             CcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHH-HhcCCCCC
Confidence            999866433221 122334567787777542      22     888  776 343343322111111111 11111122


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+..++..+.+++.+||+.||++|| +.+|.+.|+.+.+
T Consensus       361 ~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~  399 (400)
T cd05105         361 KPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP  399 (400)
T ss_pred             CCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence            2236677899999999999999999 9999999998754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=4.5e-33  Score=233.38  Aligned_cols=233  Identities=16%  Similarity=0.230  Sum_probs=172.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+...     ..+..||+|.+..... ...+.+.+|+.++++++|+||+++++++.. ...++||||+++
T Consensus         5 ~G~~g~v~~~~~~~~-----~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~lv~e~~~~   78 (257)
T cd05115           5 SGNFGCVKKGVYKMR-----KKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMASG   78 (257)
T ss_pred             CCCcccEEEEEEecC-----CCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEEEEEeCCC
Confidence            799999999987420     0455799999876532 334668999999999999999999998864 568999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++.      .....+++..++.++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++.......
T Consensus        79 ~~L~~~l~------~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~  149 (257)
T cd05115          79 GPLNKFLS------GKKDEITVSNVVELMHQVSMGMKYLE---GKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADD  149 (257)
T ss_pred             CCHHHHHH------hCCCCCCHHHHHHHHHHHHHHHHHHH---hcCeeecccchheEEEcCCCcEEeccCCccccccCCc
Confidence            99999983      22457899999999999999999999   8999999999999999999999999999997654332


Q ss_pred             ccchh--hhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 THISE--LLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~~~~--~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      .....  ...++..|++|+...      ++     |++  +++ ....|+.... ..........+.. ...+..+++.+
T Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l  227 (257)
T cd05115         150 SYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMK-GPEVMSFIEQGKR-LDCPAECPPEM  227 (257)
T ss_pred             cceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCC-HHHHHHHHHCCCC-CCCCCCCCHHH
Confidence            21111  112245677776532      22     887  776 3444443322 1222211111111 11123567899


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      .+++.+||+.||++|| +.+|.+.|+.+
T Consensus       228 ~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         228 YALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             HHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            9999999999999999 99999999864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=8.4e-33  Score=235.89  Aligned_cols=247  Identities=19%  Similarity=0.224  Sum_probs=184.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..  .....++..+++|.+........+.+.+|+..+++++|+||+++++++...+..++||||++++
T Consensus        15 ~g~~g~vy~~~~~~--~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   92 (291)
T cd05094          15 EGAFGKVFLAECYN--LSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHG   92 (291)
T ss_pred             ccCCCeEEEeEeec--cCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEecCCCC
Confidence            89999999998531  0011255679999988765555677999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccc
Q 044211          118 SLADRIRIHHTP---------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSF  188 (292)
Q Consensus       118 sL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~  188 (292)
                      +|.+++..+...         ......+++..++.++.|++.||+|||   ..+++|+||||+||+++.++.++|+|||+
T Consensus        93 ~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~dfg~  169 (291)
T cd05094          93 DLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVGANLLVKIGDFGM  169 (291)
T ss_pred             cHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCCcEEECCCCc
Confidence            999999644311         112345889999999999999999999   89999999999999999999999999999


Q ss_pred             ccccCCCCcc-chhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCc
Q 044211          189 SISIPEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       189 a~~~~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (292)
                      +......... ......++..|++|+...      ++     |++  ||+ +...|+.... ..+.++....+..+ ..+
T Consensus       170 a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-~~~~~~~~~~~~~~-~~~  247 (291)
T cd05094         170 SRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS-NTEVIECITQGRVL-ERP  247 (291)
T ss_pred             ccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHhCCCCC-CCC
Confidence            9765433221 122334566787777532      23     888  877 3555543322 12222221222211 111


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      ..++..+.+++.+||+.||++|| +.++++.|+++....
T Consensus       248 ~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~~  286 (291)
T cd05094         248 RVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKAT  286 (291)
T ss_pred             ccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhhc
Confidence            35567899999999999999999 999999999987653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=5.1e-33  Score=233.00  Aligned_cols=232  Identities=18%  Similarity=0.221  Sum_probs=174.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..     ..++..||+|.++...  ....+.+.+|+.+++.++||||+++++++. ....++||||++
T Consensus         5 ~G~~g~v~~~~~~~-----~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~   78 (257)
T cd05116           5 SGNFGTVKKGMYKM-----KKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAE   78 (257)
T ss_pred             CcCCcceEEeEEec-----CCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCC
Confidence            79999999997631     1167889999986542  234567899999999999999999999885 456789999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++......
T Consensus        79 ~~~L~~~l~-------~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~  148 (257)
T cd05116          79 LGPLNKFLQ-------KNKHVTEKNITELVHQVSMGMKYLE---ETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGAD  148 (257)
T ss_pred             CCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchhhEEEcCCCeEEECCCccccccCCC
Confidence            999999993       3346899999999999999999999   899999999999999999999999999999876543


Q ss_pred             Cccc--hhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          196 ETHI--SELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       196 ~~~~--~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ....  .....++..|++|+....      +     |++  ||+ ....|+... ......+....+.. .+.+..+++.
T Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~-~~~~~~~~i~~~~~-~~~~~~~~~~  226 (257)
T cd05116         149 ENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM-KGNEVTQMIESGER-MECPQRCPPE  226 (257)
T ss_pred             CCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHCCCC-CCCCCCCCHH
Confidence            3211  111223467877775432      2     888  877 344444322 12222222222222 1122367789


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +.++|.+||+.||++|| +.+|++.|++.
T Consensus       227 l~~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         227 MYDLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             HHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence            99999999999999999 99999999864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=3.8e-33  Score=240.98  Aligned_cols=223  Identities=17%  Similarity=0.153  Sum_probs=170.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||++....    +..+++.||+|.+....  ......+..|+.++++++||||+++++++...+..++||||+.
T Consensus         6 ~G~~g~Vy~~~~~~----~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           6 QGSFGKVFLVRKIT----GPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             eCCCEEEEEEEEec----cCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            79999999987520    11178899999987532  2233457789999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++......
T Consensus        82 ~~~L~~~l~-------~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~  151 (318)
T cd05582          82 GGDLFTRLS-------KEVMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH  151 (318)
T ss_pred             CCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCC
Confidence            999999982       3456899999999999999999999   899999999999999999999999999998765433


Q ss_pred             CccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      .. ......|+..|++|+...      ++     |++  ||+ |+. |+... .....+..........+  ...++.+.
T Consensus       152 ~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~-p~~~~-~~~~~~~~i~~~~~~~p--~~~~~~~~  226 (318)
T cd05582         152 EK-KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSL-PFQGK-DRKETMTMILKAKLGMP--QFLSPEAQ  226 (318)
T ss_pred             CC-ceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCC-CCCCC-CHHHHHHHHHcCCCCCC--CCCCHHHH
Confidence            21 223456888898877643      22     988  888 543 33322 22222222222222222  24567899


Q ss_pred             HHHhHhcCCCCCCCC-HHH
Q 044211          262 HLIFECVNESPVDRP-MVD  279 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~e  279 (292)
                      +++.+||+.||++|| +.+
T Consensus       227 ~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         227 SLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             HHHHHHhhcCHhHcCCCCC
Confidence            999999999999999 766

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.7e-33  Score=245.10  Aligned_cols=220  Identities=17%  Similarity=0.258  Sum_probs=171.1

Q ss_pred             ccCCCeeEeeecCCCCccCccC-CeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQ-ERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~-~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       . +..||+|.+...   .......+.+|+.+++.++||||+++++++...+..++||||
T Consensus        40 ~G~~g~Vy~a~~~~-------~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey  112 (340)
T PTZ00426         40 TGSFGRVILATYKN-------EDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEF  112 (340)
T ss_pred             ecCCeEEEEEEEEC-------CCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEEEeC
Confidence            99999999998742       3 368999998542   223456788999999999999999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +.+|+|.+++.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++....
T Consensus       113 ~~~g~L~~~i~-------~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~  182 (340)
T PTZ00426        113 VIGGEFFTFLR-------RNKRFPNDVGCFYAAQIVLIFEYLQ---SLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVD  182 (340)
T ss_pred             CCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEecCCCCeecC
Confidence            99999999993       3456899999999999999999999   8999999999999999999999999999998764


Q ss_pred             CCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ...    ....||+.|++|++..      ++     |++  ||+ |.. |+..... .........+....+  ...+..
T Consensus       183 ~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~-Pf~~~~~-~~~~~~i~~~~~~~p--~~~~~~  254 (340)
T PTZ00426        183 TRT----YTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCP-PFYANEP-LLIYQKILEGIIYFP--KFLDNN  254 (340)
T ss_pred             CCc----ceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCC-CCCCCCH-HHHHHHHhcCCCCCC--CCCCHH
Confidence            322    2356889998888642      22     988  888 544 4443322 222222222222222  244567


Q ss_pred             HHHHHhHhcCCCCCCC-----C-HHHHHH
Q 044211          260 FAHLIFECVNESPVDR-----P-MVDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~R-----P-~~el~~  282 (292)
                      +.+++.+||+.||.+|     | +.++++
T Consensus       255 ~~~li~~~l~~dp~~R~~~~~~~~~~~~~  283 (340)
T PTZ00426        255 CKHLMKKLLSHDLTKRYGNLKKGAQNVKE  283 (340)
T ss_pred             HHHHHHHHcccCHHHcCCCCCCCHHHHHc
Confidence            8999999999999999     5 566554

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=8.5e-33  Score=234.94  Aligned_cols=239  Identities=21%  Similarity=0.236  Sum_probs=172.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv~e~~~  115 (292)
                      +|+||.||++.+..   ....++..||+|.++.......+.+.+|+.++++++||||+++++++..  ....++|+||++
T Consensus        14 ~g~~g~v~~~~~~~---~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~   90 (284)
T cd05081          14 KGNFGSVELCRYDP---LQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLP   90 (284)
T ss_pred             CCCCceEEEEEecC---CcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEecC
Confidence            89999999997521   0112678999999987666666789999999999999999999998754  346789999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++.      .....+++..+..++.|++.||.|||   ..+++|+||||+||++++++.+||+|||++......
T Consensus        91 ~~~L~~~l~------~~~~~l~~~~~~~~~~~l~~aL~~LH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~  161 (284)
T cd05081          91 YGSLRDYLQ------KHRERLDHRKLLLYASQICKGMEYLG---SKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQD  161 (284)
T ss_pred             CCCHHHHHH------hcCcCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHhhEEECCCCeEEECCCcccccccCC
Confidence            999999993      22346899999999999999999999   899999999999999999999999999999876443


Q ss_pred             Cccc--hhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcc-------------ccccc
Q 044211          196 ETHI--SELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIID-------------PLIMG  246 (292)
Q Consensus       196 ~~~~--~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~-------------~~~~~  246 (292)
                      ....  .....++..|.+|+....      +     |++  ||+ +..............+.             ..+..
T Consensus       162 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (284)
T cd05081         162 KEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKN  241 (284)
T ss_pred             CcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhc
Confidence            2211  111122334666654322      2     888  777 43211110000000000             01111


Q ss_pred             CCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          247 DRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       247 ~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      ....+.+..++..+.+++.+||+.+|++|| +.+|++.|+.++
T Consensus       242 ~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~~  284 (284)
T cd05081         242 NGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAIR  284 (284)
T ss_pred             CCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhcC
Confidence            111122235677899999999999999999 999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=8.5e-33  Score=234.48  Aligned_cols=247  Identities=17%  Similarity=0.235  Sum_probs=178.7

Q ss_pred             ccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCe----EEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceee
Q 044211           26 FCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQER----PVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIG   99 (292)
Q Consensus        26 ~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~----~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~   99 (292)
                      +...+++..... +|+||+||+|.+..       +++    .|++|.+.... .....++..|+..+++++||||+++++
T Consensus         4 ~~~~~~~~~~~lg~G~~~~vy~~~~~~-------~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~   76 (279)
T cd05111           4 LKETELRKLKLLGSGVFGTVHKGIWIP-------EGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLG   76 (279)
T ss_pred             CCHhhceeccccCccCCcceEEEEEcC-------CCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEE
Confidence            334444443333 89999999999853       444    47888875432 233467788888999999999999999


Q ss_pred             eeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC
Q 044211          100 CCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN  179 (292)
Q Consensus       100 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~  179 (292)
                      ++.. ...++++||+++|+|.+++..      ....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++
T Consensus        77 ~~~~-~~~~~i~e~~~~gsL~~~l~~------~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~  146 (279)
T cd05111          77 ICPG-ASLQLVTQLSPLGSLLDHVRQ------HRDSLDPQRLLNWCVQIAKGMYYLE---EHRMVHRNLAARNILLKSDS  146 (279)
T ss_pred             EECC-CccEEEEEeCCCCcHHHHHHh------cccCCCHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCC
Confidence            8864 457899999999999999942      2456899999999999999999999   89999999999999999999


Q ss_pred             ceEEeecccccccCCCCcc-chhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhccccc
Q 044211          180 VAKLFDFSFSISIPEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLI  244 (292)
Q Consensus       180 ~~kl~Dfg~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~  244 (292)
                      .+||+|||++......... ......++..|++|+...      ++     |++  |++. ...|+... ......+...
T Consensus       147 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~-~~~~~~~~~~  225 (279)
T cd05111         147 IVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGM-RPHEVPDLLE  225 (279)
T ss_pred             cEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHH
Confidence            9999999999876433221 122334566776666542      22     888  7773 44343322 1111111111


Q ss_pred             ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          245 MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      .+... ..+..++..+.+++.+||..||++|| +.|+++.|..+.++.
T Consensus       226 ~~~~~-~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~~  272 (279)
T cd05111         226 KGERL-AQPQICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMARDP  272 (279)
T ss_pred             CCCcC-CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhCC
Confidence            12221 12234566889999999999999999 999999999987654

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-33  Score=241.28  Aligned_cols=214  Identities=18%  Similarity=0.220  Sum_probs=170.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.+...   .......+.+|+.++++++||||+++++++...+..++||||+
T Consensus        11 ~G~~g~Vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~   83 (291)
T cd05612          11 TGTFGRVHLVRDRI-------SEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYV   83 (291)
T ss_pred             cCCCeEEEEEEEcC-------CCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCC
Confidence            89999999999875       7899999998643   2234456889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||+|||   +.+++|+||||+|||++.++.+||+|||++.....
T Consensus        84 ~~~~L~~~~~-------~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~  153 (291)
T cd05612          84 PGGELFSYLR-------NSGRFSNSTGLFYASEIVCALEYLH---SKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRD  153 (291)
T ss_pred             CCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEEecCcchhccC
Confidence            9999999993       3456889999999999999999999   89999999999999999999999999999986643


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ..    ....|++.|++||....      +     |++  +|+ |+. |+... ...........+....+.  ..++.+
T Consensus       154 ~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~-pf~~~-~~~~~~~~i~~~~~~~~~--~~~~~~  225 (291)
T cd05612         154 RT----WTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYP-PFFDD-NPFGIYEKILAGKLEFPR--HLDLYA  225 (291)
T ss_pred             Cc----ccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCC-CCCCC-CHHHHHHHHHhCCcCCCc--cCCHHH
Confidence            22    23468889988875432      2     888  888 543 33322 222223333333332222  456689


Q ss_pred             HHHHhHhcCCCCCCCC
Q 044211          261 AHLIFECVNESPVDRP  276 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP  276 (292)
                      .+++.+||+.||.+||
T Consensus       226 ~~li~~~l~~dp~~R~  241 (291)
T cd05612         226 KDLIKKLLVVDRTRRL  241 (291)
T ss_pred             HHHHHHHcCCCHHHcc
Confidence            9999999999999999

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.2e-33  Score=242.25  Aligned_cols=223  Identities=16%  Similarity=0.149  Sum_probs=173.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.++..   .......+.+|+.++..++||||+++++++...+..++||||+
T Consensus        11 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   83 (333)
T cd05600          11 QGGYGQVFLAKKKD-------TGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYV   83 (333)
T ss_pred             ecCCeEEEEEEECC-------CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCC
Confidence            89999999999875       7899999998643   2234467889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   ..+++||||||+|||++.++.+||+|||++.....
T Consensus        84 ~g~~L~~~l~-------~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~  153 (333)
T cd05600          84 PGGDFRTLLN-------NLGVLSEDHARFYMAEMFEAVDALH---ELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT  153 (333)
T ss_pred             CCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEEEeCcCCccccc
Confidence            9999999993       3456889999999999999999999   89999999999999999999999999999976643


Q ss_pred             CCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcc------cccccCCCCCCch
Q 044211          195 GETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIID------PLIMGDRSCSGNQ  254 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  254 (292)
                          ......|++.|++||+..      ++     |++  ||+ |.. |+... ...+.+.      ..+..........
T Consensus       154 ----~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~-pf~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~  227 (333)
T cd05600         154 ----YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFP-PFSGS-TPNETWENLKYWKETLQRPVYDDPRF  227 (333)
T ss_pred             ----ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCC-CCCCC-CHHHHHHHHHhccccccCCCCCcccc
Confidence                223456888998887643      22     988  888 544 33221 1111111      1111111100012


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+..+.+++.+||+.+|.+|| +.++++.
T Consensus       228 ~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         228 NLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             ccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            4567899999999999999999 9999865

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=2.2e-33  Score=242.96  Aligned_cols=217  Identities=16%  Similarity=0.211  Sum_probs=169.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.+...   .......+.+|+.+++.++||||+++++++...+..++||||+
T Consensus         5 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~   77 (323)
T cd05595           5 KGTFGKVILVREKA-------TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYA   77 (323)
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCC
Confidence            79999999999865       8899999998653   2234456788999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|..++.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++.....
T Consensus        78 ~~~~L~~~l~-------~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~  147 (323)
T cd05595          78 NGGELFFHLS-------RERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS  147 (323)
T ss_pred             CCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEEcCCCCEEecccHHhccccC
Confidence            9999998883       3456899999999999999999999   89999999999999999999999999999875432


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ... ......|++.|++||....      +     |++  ||+ |+. |+... ................+  ...++.+
T Consensus       148 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~-Pf~~~-~~~~~~~~~~~~~~~~p--~~~~~~~  222 (323)
T cd05595         148 DGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL-PFYNQ-DHERLFELILMEEIRFP--RTLSPEA  222 (323)
T ss_pred             CCC-ccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCC-CCCCC-CHHHHHHHHhcCCCCCC--CCCCHHH
Confidence            221 1234568899988886532      2     888  888 544 33322 22222222222222222  2566789


Q ss_pred             HHHHhHhcCCCCCCCC
Q 044211          261 AHLIFECVNESPVDRP  276 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP  276 (292)
                      .+++.+||+.||.+||
T Consensus       223 ~~li~~~L~~dP~~R~  238 (323)
T cd05595         223 KSLLAGLLKKDPKQRL  238 (323)
T ss_pred             HHHHHHHccCCHHHhC
Confidence            9999999999999995

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=8.6e-33  Score=234.31  Aligned_cols=242  Identities=21%  Similarity=0.277  Sum_probs=180.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+...  ....++..||+|.++..... ....+.+|+.++++++|+||+++++++......++||||+++
T Consensus        15 ~g~~~~v~~~~~~~~--~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   92 (280)
T cd05049          15 EGAFGKVFLGECYHL--EPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFEYMEH   92 (280)
T ss_pred             ccCCceEeeeeeccc--cCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEEecCCC
Confidence            899999999987410  00114578999999765443 456799999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCC-------CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          117 GSLADRIRIHHT-------PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       117 gsL~~~l~~~~~-------~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ++|.++++..+.       .......+++..+..++.|++.|+.|||   ..+++|+||+|+||+++.++.++|+|||++
T Consensus        93 ~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~kl~d~g~~  169 (280)
T cd05049          93 GDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLA---SQHFVHRDLATRNCLVGYDLVVKIGDFGMS  169 (280)
T ss_pred             CCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeeccccccceEEEcCCCeEEECCcccc
Confidence            999999965432       1123456889999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCcc-chhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCch
Q 044211          190 ISIPEGETH-ISELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       190 ~~~~~~~~~-~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
                      ......... ......++..|++|+....      +     |++  ||+. ...|+..... ....+....+....+ +.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~-~~~~~~~~~~~~~~~-~~  247 (280)
T cd05049         170 RDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSN-EEVIECITQGRLLQR-PR  247 (280)
T ss_pred             eecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCcCCC-CC
Confidence            765433221 1223344667877775432      2     888  8773 4444433221 222222222222211 13


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      ..+..+.+++.+||+.||++|| +.|+++.|++
T Consensus       248 ~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         248 TCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             CCCHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence            5677899999999999999999 9999999863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=1.2e-32  Score=232.48  Aligned_cols=237  Identities=21%  Similarity=0.275  Sum_probs=174.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCe--EEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecC------Ccc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQER--PVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET------QIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~--~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~------~~~  107 (292)
                      +|+||.||+|.+..       ++.  .||+|.++..  .......+.+|+..++.++|+||+++++.+...      ...
T Consensus         9 ~G~~g~V~~~~~~~-------~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           9 EGEFGSVMEGQLNQ-------DDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             cccCceEEEeEEcc-------CCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            89999999999853       333  6999998653  334456789999999999999999999987532      246


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++++||+.+|+|.+++..... ......+++..+..++.|++.||.|||   ..+++|+||||+|||+++++.+||+|||
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg  157 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRL-GDCPQYLPTQMLVKFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADFG  157 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhcc-cCCcccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhheEEcCCCCEEECCCC
Confidence            899999999999998842221 123456899999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCccc-hhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC
Q 044211          188 FSISIPEGETHI-SELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       188 ~a~~~~~~~~~~-~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (292)
                      ++.......... .....++..|.++++....           |++  ||+ +...|+... ......+....+.... .
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~-~~~~~~~~~~~~~~~~-~  235 (272)
T cd05075         158 LSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGV-ENSEIYDYLRQGNRLK-Q  235 (272)
T ss_pred             cccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHcCCCCC-C
Confidence            998765433211 1223345567666554322           887  777 444444322 2222222222222211 1


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +..++..+.+++.+||+.||++|| +.++++.|+++
T Consensus       236 ~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         236 PPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            235667899999999999999999 99999999875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=9.9e-33  Score=230.12  Aligned_cols=229  Identities=24%  Similarity=0.310  Sum_probs=173.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|...        +++.||+|.++.... .....+.+|+.++++++||||+++++++...+..++||||+++
T Consensus         5 ~g~~g~vy~~~~~--------~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   76 (250)
T cd05085           5 KGNFGEVFKGTLK--------DKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPG   76 (250)
T ss_pred             CCCCceEEEEEec--------CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCC
Confidence            7999999999975        888999999876533 2345688999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++.      .....+++..+..++.+++.||.|+|   ..+++|+||+|+||+++.++.+||+|||++.......
T Consensus        77 ~~L~~~~~------~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~  147 (250)
T cd05085          77 GDFLSFLR------KKKDELKTKQLVKFALDAAAGMAYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGI  147 (250)
T ss_pred             CcHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccChheEEEcCCCeEEECCCccceeccccc
Confidence            99999983      22345789999999999999999999   8999999999999999999999999999987654332


Q ss_pred             ccchhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      ........++..|.+|++..      ++     |++  +++. ...|+.... ..........+.. ...+..++..+.+
T Consensus       148 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~  225 (250)
T cd05085         148 YSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMT-NQQAREQVEKGYR-MSCPQKCPDDVYK  225 (250)
T ss_pred             cccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHHHcCCC-CCCCCCCCHHHHH
Confidence            22222233455677776543      22     877  6663 443433221 1111111111111 1111356778999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      ++.+||+.+|++|| +.++++.|.
T Consensus       226 li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         226 VMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             HHHHHcccCcccCCCHHHHHHHhc
Confidence            99999999999999 999999875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=1.9e-32  Score=230.24  Aligned_cols=230  Identities=18%  Similarity=0.221  Sum_probs=175.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        .+..||+|.++.... ....+.+|+.++++++|+||+++++.+. ....++||||+.+|
T Consensus        16 ~g~~~~v~~~~~~--------~~~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~   85 (262)
T cd05071          16 QGCFGEVWMGTWN--------GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMSKG   85 (262)
T ss_pred             CCCCCcEEEEEec--------CCceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcCCCC
Confidence            8999999999886        556799999875432 3467899999999999999999999874 45689999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||.+..+.....
T Consensus        86 ~L~~~~~~~-----~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~  157 (262)
T cd05071          86 SLLDFLKGE-----MGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY  157 (262)
T ss_pred             cHHHHHhhc-----cccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcccEEEcCCCcEEeccCCceeecccccc
Confidence            999999421     2346788999999999999999999   89999999999999999999999999999987654433


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|++|+....      +     |++  +|+ +...|+... ............. +.+.....+..+.++
T Consensus       158 ~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~~l  235 (262)
T cd05071         158 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-VNREVLDQVERGY-RMPCPPECPESLHDL  235 (262)
T ss_pred             ccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC-ChHHHHHHHhcCC-CCCCccccCHHHHHH
Confidence            22233445667877776532      2     888  877 455444322 2222222221111 111123677889999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +.+||+.||++|| +.++++.|++.
T Consensus       236 i~~~l~~~p~~Rp~~~~~~~~l~~~  260 (262)
T cd05071         236 MCQCWRKEPEERPTFEYLQAFLEDY  260 (262)
T ss_pred             HHHHccCCcccCCCHHHHHHHHHHh
Confidence            9999999999999 99999999875

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.7e-32  Score=231.54  Aligned_cols=240  Identities=21%  Similarity=0.275  Sum_probs=176.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCc------ceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQI------PIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~------~~l  109 (292)
                      +|+||.||+|.+..    ....+..||+|.++...  ......+.+|+..++.++||||+++++++.....      .++
T Consensus         9 ~G~~g~v~~~~~~~----~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~   84 (273)
T cd05035           9 EGEFGSVMEGQLSQ----DDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMV   84 (273)
T ss_pred             cCCCceEEEEEEec----CCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccEE
Confidence            89999999998742    00023679999987542  2334678999999999999999999998876443      789


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ++||+++|+|..++..... ......+++..+..++.|++.||.|||   ..+++|+||||+||++++++.+||+|||++
T Consensus        85 v~e~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~i~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  160 (273)
T cd05035          85 ILPFMKHGDLHSFLLYSRL-GGLPEKLPLQTLLKFMVDIALGMEYLS---NRNFIHRDLAARNCMLREDMTVCVADFGLS  160 (273)
T ss_pred             EEeccCCCCHHHHHHHhhc-cCCcccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchheEEECCCCeEEECCccce
Confidence            9999999999999843321 123457899999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccc-hhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCch
Q 044211          190 ISIPEGETHI-SELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       190 ~~~~~~~~~~-~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
                      .......... .....++..|++++...      ++     |++  ||+ +...|+... ...+..+....+.. ...+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~-~~~~~~~~~~~~~~-~~~~~  238 (273)
T cd05035         161 KKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGV-ENHEIYDYLRHGNR-LKQPE  238 (273)
T ss_pred             eeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHcCCC-CCCCc
Confidence            8765433221 12223345666665432      22     888  877 455444332 22223332222221 11224


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      .++..+.+++.+||+.||++|| +.|+++.|+++
T Consensus       239 ~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         239 DCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            6677999999999999999999 99999999876

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=9.5e-33  Score=236.19  Aligned_cols=227  Identities=18%  Similarity=0.264  Sum_probs=176.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|....       +++.|++|.+..........+.+|+.+++.+.|+||+++++.+......++|+||++++
T Consensus        30 ~g~~~~v~~~~~~~-------~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~  102 (296)
T cd06654          30 QGASGTVYTAMDVA-------TGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGG  102 (296)
T ss_pred             CCCCeEEEEEEECC-------CCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCC
Confidence            89999999999765       88999999998765555677899999999999999999999999989999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.        ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++........
T Consensus       103 ~L~~~~~--------~~~~~~~~~~~i~~ql~~aL~~LH---~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~  171 (296)
T cd06654         103 SLTDVVT--------ETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  171 (296)
T ss_pred             CHHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEECccccchhcccccc
Confidence            9999992        235788999999999999999999   89999999999999999999999999999876543221


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLI  264 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  264 (292)
                      . .....++..|++|+....      +     |++  +|+....|+...............+.++...+...+..+.+++
T Consensus       172 ~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  250 (296)
T cd06654         172 K-RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFL  250 (296)
T ss_pred             c-cCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHH
Confidence            1 123457778877775432      2     888  8883333444333222222211122222222235667899999


Q ss_pred             hHhcCCCCCCCC-HHHHHHH
Q 044211          265 FECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       265 ~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+||+.+|++|| +.+++..
T Consensus       251 ~~~l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         251 NRCLDMDVEKRGSAKELLQH  270 (296)
T ss_pred             HHHCcCCcccCcCHHHHhhC
Confidence            999999999999 9999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=2.2e-32  Score=232.28  Aligned_cols=227  Identities=15%  Similarity=0.182  Sum_probs=176.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       ++..+++|.+..........+.+|+.+++.++|+||+++++++...+..++|+||++++
T Consensus        15 ~g~~g~v~~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~   87 (282)
T cd06643          15 DGAFGKVYKAQNKE-------TGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGG   87 (282)
T ss_pred             cCCCeEEEEEEECC-------CCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCC
Confidence            89999999999875       78899999997665556677899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|..++.      .....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++....... 
T Consensus        88 ~l~~~~~------~~~~~l~~~~~~~~~~qi~~~L~~LH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~-  157 (282)
T cd06643          88 AVDAVML------ELERPLTEPQIRVVCKQTLEALNYLH---ENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI-  157 (282)
T ss_pred             cHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEccCCCEEEccccccccccccc-
Confidence            9998873      12456899999999999999999999   8999999999999999999999999999987653321 


Q ss_pred             cchhhhhcccccccccccC-----------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCC-CCCCchHHH
Q 044211          198 HISELLSGLRAFDLARLNE-----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR-SCSGNQQQL  257 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  257 (292)
                      .......++..|++|++..           ++     |++  +|+ |+ .|+........... ...... ....+...+
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~-~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  235 (282)
T cd06643         158 QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIE-PPHHELNPMRVLLK-IAKSEPPTLAQPSRWS  235 (282)
T ss_pred             cccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCC-CCccccCHHHHHHH-HhhcCCCCCCCccccC
Confidence            2223456788888887641           22     888  888 54 34332222111111 111111 111223566


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+.+++.+||+.||++|| +.++++.
T Consensus       236 ~~~~~li~~~l~~~p~~Rp~~~~il~~  262 (282)
T cd06643         236 SEFKDFLKKCLEKNVDARWTTTQLLQH  262 (282)
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            7899999999999999999 9998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=4.1e-33  Score=237.24  Aligned_cols=227  Identities=17%  Similarity=0.199  Sum_probs=170.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||++.+..       +++.||+|.++..  .......+.+|+.++++++||||+++++++...+..++||||+.
T Consensus        11 ~g~~~~v~~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   83 (287)
T cd07848          11 EGAYGVVLKCRHKE-------TKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVE   83 (287)
T ss_pred             ccCCEEEEEEEECC-------CCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEecCC
Confidence            79999999999975       7889999998653  22344668899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      ++++..+.       .....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++......
T Consensus        84 ~~~l~~~~-------~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  153 (287)
T cd07848          84 KNMLELLE-------EMPNGVPPEKVRSYIYQLIKAIHWCH---KNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEG  153 (287)
T ss_pred             CCHHHHHH-------hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccCccccccc
Confidence            87666554       23456899999999999999999999   899999999999999999999999999999876543


Q ss_pred             CccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhh------cc-------------c
Q 044211          196 ETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEI------ID-------------P  242 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~------~~-------------~  242 (292)
                      .........|+..|++||+...      +     |++  ||+ |+. |+.........      ..             +
T Consensus       154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (287)
T cd07848         154 SNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQP-LFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNP  232 (287)
T ss_pred             ccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccc
Confidence            3333334568888988875432      2     888  888 653 33221111000      00             0


Q ss_pred             ccccC-CCCCC---------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 LIMGD-RSCSG---------NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 ~~~~~-~~~~~---------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ..... .+...         ....+..+.+|+.+||+.||++|| +.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         233 RFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             hhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            00000 00000         012456799999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.1e-34  Score=226.26  Aligned_cols=226  Identities=19%  Similarity=0.252  Sum_probs=183.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC----CcchHH----HHHHHHHHHHhc-CCCCccceeeeeecCCcce
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES----KPRTYD----CCINNIVYASQM-IHRCIFKLIGCCLETQIPI  108 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~----~~~~~~----~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~  108 (292)
                      .|..++|.++.++.       +++.+|+|++...    +.+...    .-..|+.+|+++ .||+|+++.++|.++...+
T Consensus        27 rgvss~vrRci~k~-------t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF~F   99 (411)
T KOG0599|consen   27 RGVSSVVRRCIHKE-------TGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDAFVF   99 (411)
T ss_pred             ccchhhhhhhhhcc-------cccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcchhh
Confidence            78889999999887       9999999998542    222232    346799999998 6999999999999999999


Q ss_pred             EEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccc
Q 044211          109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSF  188 (292)
Q Consensus       109 lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~  188 (292)
                      +|+|.|+.|-|.+++       .+...+++....+|+.|+..|+.|||   ..+|+||||||+|||++++.++||+|||+
T Consensus       100 lVFdl~prGELFDyL-------ts~VtlSEK~tR~iMrqlfegVeylH---a~~IVHRDLKpENILlddn~~i~isDFGF  169 (411)
T KOG0599|consen  100 LVFDLMPRGELFDYL-------TSKVTLSEKETRRIMRQLFEGVEYLH---ARNIVHRDLKPENILLDDNMNIKISDFGF  169 (411)
T ss_pred             hhhhhcccchHHHHh-------hhheeecHHHHHHHHHHHHHHHHHHH---HhhhhhcccChhheeeccccceEEeccce
Confidence            999999999999999       56788999999999999999999999   99999999999999999999999999999


Q ss_pred             ccccCCCCccchhhhhcccccccccccCCC-----------------CeE--EEccchhhhhhccchhhhcccccccCC-
Q 044211          189 SISIPEGETHISELLSGLRAFDLARLNEDD-----------------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDR-  248 (292)
Q Consensus       189 a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~-  248 (292)
                      |+.+..+..  ....+||++|.+|+...-+                 ||+  .|+..++|||...++.- +.....|.+ 
T Consensus       170 a~~l~~Gek--LrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlM-LR~ImeGkyq  246 (411)
T KOG0599|consen  170 ACQLEPGEK--LRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLM-LRMIMEGKYQ  246 (411)
T ss_pred             eeccCCchh--HHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHH-HHHHHhcccc
Confidence            999976543  4568999999777655433                 888  45555677776543211 112223333 


Q ss_pred             -CCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          249 -SCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       249 -~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                       ..+.+.+.+....+||.+||+.||.+|. +.|+++.
T Consensus       247 F~speWadis~~~KdLIsrlLqVdp~~Ritake~LaH  283 (411)
T KOG0599|consen  247 FRSPEWADISATVKDLISRLLQVDPTKRITAKEALAH  283 (411)
T ss_pred             cCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcC
Confidence             3344457888999999999999999999 9998764

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=8.7e-33  Score=240.17  Aligned_cols=226  Identities=16%  Similarity=0.209  Sum_probs=170.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||++.+..       ++..+|+|.++.. .......+.+|++++++++|+||+++++++..++..++||||+++
T Consensus        15 ~g~~g~V~~~~~~~-------~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   87 (333)
T cd06650          15 AGNGGVVFKVSHKP-------SGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDG   87 (333)
T ss_pred             CCCCEEEEEEEECC-------CCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEecCCC
Confidence            89999999999975       7889999998764 333446789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.++++       ....+++..+..++.+++.||.|||+  ..+++|+||||+|||++.++.+||+|||++.......
T Consensus        88 ~~L~~~l~-------~~~~~~~~~~~~~~~~l~~~l~~lH~--~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~  158 (333)
T cd06650          88 GSLDQVLK-------KAGRIPEQILGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM  158 (333)
T ss_pred             CcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhc
Confidence            99999993       23458889999999999999999993  2479999999999999999999999999987653321


Q ss_pred             ccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhc--cchhhh---------------------
Q 044211          197 THISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEE--DRLNEI---------------------  239 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~--~~~~~~---------------------  239 (292)
                         .....|+..|++||.....           |++  +|+ |+.+ +...  ......                     
T Consensus       159 ---~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (333)
T cd06650         159 ---ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYP-IPPPDAKELELMFGCPVEGDPAESETSPRPRPP  234 (333)
T ss_pred             ---cccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCC-CCCcchhHHHHHhcCcccCCccccccCcccCCc
Confidence               1234678889888765432           888  887 6542 2110  000000                     


Q ss_pred             --------------------cccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          240 --------------------IDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       240 --------------------~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                          .+.......+.......+..+.+|+.+||+.||++|| +.|++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h  299 (333)
T cd06650         235 GRPLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVH  299 (333)
T ss_pred             cchhhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhC
Confidence                                0000111111111112356789999999999999999 9999754

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.6e-33  Score=241.38  Aligned_cols=228  Identities=18%  Similarity=0.228  Sum_probs=188.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeeeeecCCc-ceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGCCLETQI-PILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~-~~lv~e~~  114 (292)
                      +|+||.++...++.       +++.|++|.+.....  ...+...+|..++++++|||||.+.+.|..++. .++||+||
T Consensus        14 ~GafG~a~lvrhk~-------~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~   86 (426)
T KOG0589|consen   14 RGAFGSALLVRHKS-------DDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVMEYC   86 (426)
T ss_pred             ccccchhhhhhhcc-------CCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEEeec
Confidence            89999999999976       888999999875432  233467899999999999999999999999888 89999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +||++.+.+++.     .+..++++.++.|+.|++.|+.|||   ...|+|||||+.|||+++++.++|+|||+|+.+.+
T Consensus        87 eGg~l~~~i~~~-----k~~~f~E~~i~~~~~Q~~~av~ylH---~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~  158 (426)
T KOG0589|consen   87 EGGDLAQLIKEQ-----KGVLFPEERILKWFVQILLAVNYLH---ENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNP  158 (426)
T ss_pred             CCCCHHHHHHHH-----hhccccHHHHHHHHHHHHHHHHHHH---hhhhhcccchhhhhhccccCceeecchhhhhhcCC
Confidence            999999999533     3678999999999999999999999   99999999999999999999999999999998876


Q ss_pred             CCccchhhhhcccccccccccC------CC-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      .. ....+..||+.|+.|++..      |+     ||+  ||..-.+.| ...+...++.....+...+. +.....++.
T Consensus       159 ~~-~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF-~a~~m~~Li~ki~~~~~~Pl-p~~ys~el~  235 (426)
T KOG0589|consen  159 ED-SLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAF-KASNMSELILKINRGLYSPL-PSMYSSELR  235 (426)
T ss_pred             ch-hhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhccccc-CccchHHHHHHHhhccCCCC-CccccHHHH
Confidence            54 2356688999997776654      33     777  888444333 33445555555555442222 247788999


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .++..|++.+|..|| +.+++..
T Consensus       236 ~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  236 SLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             HHHHHHhhcCCccCCCHHHHhhC
Confidence            999999999999999 9999876

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=1.5e-33  Score=243.32  Aligned_cols=231  Identities=13%  Similarity=0.130  Sum_probs=183.2

Q ss_pred             ccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeee
Q 044211           26 FCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCC  101 (292)
Q Consensus        26 ~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~  101 (292)
                      .+.++.+..+.. +|+||.||.|+-+.       +|..+|+|++++.   ...+...++.|-.+|...++++||+++-.|
T Consensus       138 ~~~~DFe~Lk~IgkGAfGeVrLarKk~-------Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsF  210 (550)
T KOG0605|consen  138 LSLDDFELLKVIGKGAFGEVRLARKKD-------TGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSF  210 (550)
T ss_pred             CCcccchhheeeccccceeEEEEEEcc-------CCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEe
Confidence            455555555544 99999999999876       9999999999764   345567788999999999999999999999


Q ss_pred             ecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCce
Q 044211          102 LETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVA  181 (292)
Q Consensus       102 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~  181 (292)
                      .+...+|+||||.+||++..+|       ..-..|++..+..++.+.+.|+..+|   +.|++||||||+|+|||..|.+
T Consensus       211 QD~~~LYLiMEylPGGD~mTLL-------~~~~~L~e~~arfYiaE~vlAI~~iH---~~gyIHRDIKPdNlLiD~~GHi  280 (550)
T KOG0605|consen  211 QDKEYLYLIMEYLPGGDMMTLL-------MRKDTLTEDWARFYIAETVLAIESIH---QLGYIHRDIKPDNLLIDAKGHI  280 (550)
T ss_pred             cCCCeeEEEEEecCCccHHHHH-------HhcCcCchHHHHHHHHHHHHHHHHHH---HcCcccccCChhheeecCCCCE
Confidence            9999999999999999999999       35678999999999999999999999   9999999999999999999999


Q ss_pred             EEeecccccccCC----------------------CCcc------------------------chhhhhccccccccccc
Q 044211          182 KLFDFSFSISIPE----------------------GETH------------------------ISELLSGLRAFDLARLN  215 (292)
Q Consensus       182 kl~Dfg~a~~~~~----------------------~~~~------------------------~~~~~~g~~~y~~~~~~  215 (292)
                      ||+|||++.-+..                      .+..                        ...+.+|||.|++||+.
T Consensus       281 KLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVl  360 (550)
T KOG0605|consen  281 KLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVL  360 (550)
T ss_pred             eeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHH
Confidence            9999999853321                      0000                        01346799999999988


Q ss_pred             CCC-----------CeE--EEc-cchhhhhhccchhhhcccccccC--CCCCCchHHHHHHHHHHhHhcCCCCCCCC
Q 044211          216 EDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD--RSCSGNQQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       216 ~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                      .+.           |+|  ||+ |.+ ||. .....+.+..++...  ...|....+.++.++||.+|+- ||++|-
T Consensus       361 l~kgY~~~cDwWSLG~ImyEmLvGyP-PF~-s~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RL  434 (550)
T KOG0605|consen  361 LGKGYGKECDWWSLGCIMYEMLVGYP-PFC-SETPQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRL  434 (550)
T ss_pred             hcCCCCccccHHHHHHHHHHHHhCCC-CCC-CCCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhc
Confidence            765           888  998 744 333 334444444433322  2222223566899999999999 999997

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=2e-32  Score=229.88  Aligned_cols=237  Identities=16%  Similarity=0.250  Sum_probs=173.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeec-CCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE-TQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..    .......||+|.+... .......+.+|+.+++.++||||+++++++.. ++..++++||+.
T Consensus         5 ~g~~g~v~~~~~~~----~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           5 KGHFGCVYHGTLID----SDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             ccCCceEEEEEEec----CCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            79999999998631    0013467999998653 23345678899999999999999999997764 556889999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++..      ....+++..+..++.|++.||.|||   ..+++|+||+|+|||++.++.+||+|||++......
T Consensus        81 ~~~L~~~~~~------~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~  151 (262)
T cd05058          81 HGDLRNFIRS------ETHNPTVKDLIGFGLQVAKGMEYLA---SKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDK  151 (262)
T ss_pred             CCCHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCccccccccCC
Confidence            9999999932      2344677788999999999999999   899999999999999999999999999999765432


Q ss_pred             Cccc---hhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          196 ETHI---SELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       196 ~~~~---~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ....   .....++..|++|++..      ++     |++  ||+ +..+++... ...+.......+..+. .+...+.
T Consensus       152 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~  229 (262)
T cd05058         152 EYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-DSFDITVYLLQGRRLL-QPEYCPD  229 (262)
T ss_pred             cceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHhcCCCCC-CCCcCCH
Confidence            2111   11233455677666532      22     888  887 555444322 2222222222222221 1134567


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+.+++.+||+.+|++|| +.++++.|+++..
T Consensus       230 ~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~~  261 (262)
T cd05058         230 PLYEVMLSCWHPKPEMRPTFSELVSRIEQIFS  261 (262)
T ss_pred             HHHHHHHHHcCCChhhCCCHHHHHHHHHHHhc
Confidence            899999999999999999 9999999998754

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=4.9e-33  Score=240.09  Aligned_cols=222  Identities=16%  Similarity=0.248  Sum_probs=168.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       +++.||+|.++..   .....+.+..|..++..+ +||||+++++++...+..++||||
T Consensus         5 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~   77 (316)
T cd05592           5 KGSFGKVMLAELKG-------TNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEY   77 (316)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcC
Confidence            79999999999865       7889999998753   122334556677777654 899999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++.       ....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++....
T Consensus        78 ~~gg~L~~~~~-------~~~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~  147 (316)
T cd05592          78 LNGGDLMFHIQ-------SSGRFDEARARFYAAEIICGLQFLH---KKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENM  147 (316)
T ss_pred             CCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHeEECCCCCEEEccCcCCeECC
Confidence            99999999983       3456899999999999999999999   8999999999999999999999999999997654


Q ss_pred             CCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ... .......||..|++|+...      ++     |++  ||+ |+. |+... .............+..+  ...+..
T Consensus       148 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~-Pf~~~-~~~~~~~~i~~~~~~~~--~~~~~~  222 (316)
T cd05592         148 NGE-GKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQS-PFHGE-DEDELFDSILNDRPHFP--RWISKE  222 (316)
T ss_pred             CCC-CccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCC-CCCCC-CHHHHHHHHHcCCCCCC--CCCCHH
Confidence            322 2234456899998887543      22     888  888 644 33322 22222222222222222  245668


Q ss_pred             HHHHHhHhcCCCCCCCC-HH-HHH
Q 044211          260 FAHLIFECVNESPVDRP-MV-DVA  281 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~-el~  281 (292)
                      +.+++.+||+.||++|| +. ++.
T Consensus       223 ~~~ll~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05592         223 AKDCLSKLFERDPTKRLGVDGDIR  246 (316)
T ss_pred             HHHHHHHHccCCHHHcCCChHHHH
Confidence            89999999999999999 75 443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=3.8e-33  Score=241.17  Aligned_cols=218  Identities=17%  Similarity=0.269  Sum_probs=169.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|....       +++.||+|.+...   .......+..|..++..+ +||||+++++++...+.+++||||
T Consensus         5 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey   77 (320)
T cd05590           5 KGSFGKVMLARLKE-------SGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEF   77 (320)
T ss_pred             eCCCeEEEEEEEcC-------CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcC
Confidence            79999999999875       7899999998643   223445677888888877 699999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++.       ....+++..+..++.|++.||.|||   ..+++||||||+|||++.++.+||+|||++....
T Consensus        78 ~~~g~L~~~i~-------~~~~l~~~~~~~~~~ql~~~L~~lH---~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~  147 (320)
T cd05590          78 VNGGDLMFHIQ-------KSRRFDEARARFYAAEITSALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI  147 (320)
T ss_pred             CCCchHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecC
Confidence            99999999883       3456899999999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......|++.|++||....      +     |++  +|+ |+. |+.. ............+....+  ...+..
T Consensus       148 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~-Pf~~-~~~~~~~~~i~~~~~~~~--~~~~~~  222 (320)
T cd05590         148 FNGK-TTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHA-PFEA-ENEDDLFEAILNDEVVYP--TWLSQD  222 (320)
T ss_pred             cCCC-cccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCC-CCCC-CCHHHHHHHHhcCCCCCC--CCCCHH
Confidence            2221 2234568999988876432      2     888  888 544 3322 222222333333322222  245678


Q ss_pred             HHHHHhHhcCCCCCCCC-H
Q 044211          260 FAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~  277 (292)
                      +.+++.+||+.||.+|| +
T Consensus       223 ~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         223 AVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             HHHHHHHHcccCHHHCCCC
Confidence            99999999999999999 8

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=3.5e-32  Score=230.85  Aligned_cols=238  Identities=19%  Similarity=0.206  Sum_probs=173.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv~e~~  114 (292)
                      +|+||.||++.+...   ...++..||+|.+...... ....+.+|+..++.++|+||+++++++..  ....++++||+
T Consensus        14 ~g~~~~v~~~~~~~~---~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~   90 (284)
T cd05038          14 EGHFGKVELCRYDPL---GDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYL   90 (284)
T ss_pred             cCCCeeEEEeeecCC---CCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEecC
Confidence            899999999987420   0114789999999866443 46789999999999999999999999877  55789999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.+++..      ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++.....
T Consensus        91 ~~~~l~~~l~~------~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05038          91 PSGSLRDYLQR------HRDQINLKRLLLFSSQICKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPE  161 (284)
T ss_pred             CCCCHHHHHHh------CccccCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEccccccccccc
Confidence            99999999932      2336899999999999999999999   89999999999999999999999999999987753


Q ss_pred             CCccc--hhhhhccccccccccc------CCC-----CeE--EEc-cchhhhhhccch------------hhhccccccc
Q 044211          195 GETHI--SELLSGLRAFDLARLN------EDD-----GYV--VLL-DHIKKYFEEDRL------------NEIIDPLIMG  246 (292)
Q Consensus       195 ~~~~~--~~~~~g~~~y~~~~~~------~~~-----Gvi--el~-~~~~~~~~~~~~------------~~~~~~~~~~  246 (292)
                      .....  .....++..|.+|+..      .++     |++  ||+ |..+........            ...+...+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (284)
T cd05038         162 DKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKE  241 (284)
T ss_pred             CCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHc
Confidence            22211  1112233345554432      222     888  888 654221111110            0001111111


Q ss_pred             CCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          247 DRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       247 ~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      ....+.+..++..+.+++.+||+.+|++|| +.||+++|+.+
T Consensus       242 ~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         242 GERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             CCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence            112222235667899999999999999999 99999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=2.6e-32  Score=234.34  Aligned_cols=247  Identities=15%  Similarity=0.196  Sum_probs=181.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+....+....++..||+|.+.... ......+.+|+..++.+ +||||+++++++......+++|||+.
T Consensus        25 ~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~  104 (304)
T cd05101          25 EGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYAS  104 (304)
T ss_pred             ccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceEEEEecCC
Confidence            89999999997532122222255689999987542 33456789999999999 89999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          116 CGSLADRIRIHHTPQ---------PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      +|+|.+++.......         .....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+||
T Consensus       105 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Nili~~~~~~kl~D~  181 (304)
T cd05101         105 KGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADF  181 (304)
T ss_pred             CCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH---HCCeeecccccceEEEcCCCcEEECCC
Confidence            999999996432110         12346788899999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCccc-hhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          187 SFSISIPEGETHI-SELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       187 g~a~~~~~~~~~~-~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      |++.......... .....++..|++|+...      ++     |++  +++ +...++.. ............+. ...
T Consensus       182 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~-~~~~~~~~~~~~~~-~~~  259 (304)
T cd05101         182 GLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPG-IPVEELFKLLKEGH-RMD  259 (304)
T ss_pred             ccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCccc-CCHHHHHHHHHcCC-cCC
Confidence            9998765432221 12233456787777543      23     887  776 33333322 22222222221111 112


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+..++..+.+++.+||+.+|++|| +.++++.|+++..
T Consensus       260 ~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~  298 (304)
T cd05101         260 KPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILT  298 (304)
T ss_pred             CCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHH
Confidence            2236678899999999999999999 9999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.8e-32  Score=233.70  Aligned_cols=246  Identities=18%  Similarity=0.234  Sum_probs=179.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.....  .+......+++|.+.... ......+.+|+..++.++||||+++++.+...+..++++||+.+
T Consensus        10 ~g~~g~vy~~~~~~~--~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   87 (290)
T cd05045          10 EGEFGKVVKATAFRL--KGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKY   87 (290)
T ss_pred             CcCCcceEEEEEecC--CCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEEecCC
Confidence            899999999986310  011133579999887543 23456789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCC-----------------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC
Q 044211          117 GSLADRIRIHHTP-----------------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN  179 (292)
Q Consensus       117 gsL~~~l~~~~~~-----------------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~  179 (292)
                      |+|.+++......                 ......+++..++.++.|++.||.|||   ..+++|+||+|+||++++++
T Consensus        88 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~ivH~dikp~nill~~~~  164 (290)
T cd05045          88 GSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLAARNVLVAEGR  164 (290)
T ss_pred             CCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHH---HCCeehhhhhhheEEEcCCC
Confidence            9999998543211                 112346889999999999999999999   89999999999999999999


Q ss_pred             ceEEeecccccccCCCCcc-chhhhhccccccccccc------CCC-----CeE--EEc-cchhhhhhccchhhhccccc
Q 044211          180 VAKLFDFSFSISIPEGETH-ISELLSGLRAFDLARLN------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLI  244 (292)
Q Consensus       180 ~~kl~Dfg~a~~~~~~~~~-~~~~~~g~~~y~~~~~~------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~  244 (292)
                      .+||+|||++......... ......++..|++|+..      .++     |++  ||+ ....|+.. .....+.+...
T Consensus       165 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~-~~~~~~~~~~~  243 (290)
T cd05045         165 KMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPG-IAPERLFNLLK  243 (290)
T ss_pred             cEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHh
Confidence            9999999999765432221 12223345677777643      222     887  877 34444322 22222222111


Q ss_pred             ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          245 MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .. ...+.+..++..+.+++.+||+.+|++|| +.++++.|+++..+
T Consensus       244 ~~-~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~~  289 (290)
T cd05045         244 TG-YRMERPENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMMVK  289 (290)
T ss_pred             CC-CCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHHhc
Confidence            11 11112235677899999999999999999 99999999998754

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=2.9e-32  Score=232.66  Aligned_cols=244  Identities=19%  Similarity=0.251  Sum_probs=178.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||++.+....+  ......+|+|.+.... ......+.+|+.++.++ +|+||+++++++..++..+++|||++
T Consensus        22 ~g~~g~v~~~~~~~~~~--~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~e~~~   99 (293)
T cd05053          22 EGAFGQVVKAEAVGLDN--PNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEYAA   99 (293)
T ss_pred             ccccccEEEEEEecCCC--CCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEEEeCC
Confidence            89999999998742000  0134689999987542 23445688999999999 79999999999999999999999999


Q ss_pred             CCChhHHhhhhCC---------CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          116 CGSLADRIRIHHT---------PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       116 ~gsL~~~l~~~~~---------~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      +|+|..++.....         .......+++..++.++.|++.||.|||   ..+++|+||+|+||+++.++.+||+||
T Consensus       100 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~Nil~~~~~~~kL~Df  176 (293)
T cd05053         100 HGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA---SKKCIHRDLAARNVLVTEDHVMKIADF  176 (293)
T ss_pred             CCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCccccccceeeEEEcCCCeEEeCcc
Confidence            9999999954321         0123467899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCccc-hhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          187 SFSISIPEGETHI-SELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       187 g~a~~~~~~~~~~-~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      |++.......... .....++..|++|+....      +     |++  |++ ....|+.. ....+..+....+. ...
T Consensus       177 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~-~~~~~~~~~~~~~~-~~~  254 (293)
T cd05053         177 GLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPG-IPVEELFKLLKEGY-RME  254 (293)
T ss_pred             ccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCC-CCHHHHHHHHHcCC-cCC
Confidence            9998765433221 122234556777775322      2     888  766 23333322 22222222111111 111


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      .+..++..+.+|+.+||+.||++|| +.++++.|+.+.
T Consensus       255 ~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         255 KPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             CCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence            1235677899999999999999999 999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=2.5e-32  Score=229.21  Aligned_cols=229  Identities=17%  Similarity=0.211  Sum_probs=174.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||+|.+.        .+..||+|.+.... ...+.+.+|+.++++++|+|++++++++. .+..+++|||+.+|
T Consensus        16 ~g~~~~v~~~~~~--------~~~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~   85 (260)
T cd05069          16 QGCFGEVWMGTWN--------GTTKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFMGKG   85 (260)
T ss_pred             CcCCCeEEEEEEc--------CCceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcCCCC
Confidence            8999999999986        55679999886543 23466889999999999999999999875 45689999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||++.....+..
T Consensus        86 ~L~~~~~~~-----~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~  157 (260)
T cd05069          86 SLLDFLKEG-----DGKYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEY  157 (260)
T ss_pred             CHHHHHhhC-----CCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCeEEECCCccceEccCCcc
Confidence            999999421     2345788999999999999999999   89999999999999999999999999999977654333


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|++|+....      +     |++  +|+ +...|+..... ......... ....+.+...+..+.++
T Consensus       158 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l  235 (260)
T cd05069         158 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVN-REVLEQVER-GYRMPCPQGCPESLHEL  235 (260)
T ss_pred             cccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCH-HHHHHHHHc-CCCCCCCcccCHHHHHH
Confidence            22223345667877775432      2     888  887 45555443222 122222111 11112223567789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      +.+||+.||++|| +.++++.|++
T Consensus       236 i~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         236 MKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             HHHHccCCcccCcCHHHHHHHHhc
Confidence            9999999999999 9999999975

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.3e-32  Score=232.70  Aligned_cols=230  Identities=18%  Similarity=0.220  Sum_probs=167.0

Q ss_pred             ccCCCeeEeeecCCC-----------------CccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeee
Q 044211           38 IKNGYKLYEGFFQNR-----------------PISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGC  100 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~-----------------~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~  100 (292)
                      +|+||.||+|.+..-                 ..........|++|.+..........+.+|+.+++.++||||++++++
T Consensus         5 ~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~~~~   84 (274)
T cd05076           5 QGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFVHGV   84 (274)
T ss_pred             cccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeEEEE
Confidence            799999999986310                 001112334699999876544455678899999999999999999999


Q ss_pred             eecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC-
Q 044211          101 CLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-  179 (292)
Q Consensus       101 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~-  179 (292)
                      +...+..++||||+++|+|..++.      .....+++..+..++.|++.||.|||   +.+++|+||||+||++++.+ 
T Consensus        85 ~~~~~~~~lv~ey~~~g~L~~~l~------~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~Nill~~~~~  155 (274)
T cd05076          85 CVRGSENIMVEEFVEHGPLDVCLR------KEKGRVPVAWKITVAQQLASALSYLE---DKNLVHGNVCAKNILLARLGL  155 (274)
T ss_pred             EEeCCceEEEEecCCCCcHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHH---cCCccCCCCCcccEEEeccCc
Confidence            999999999999999999999983      22456889999999999999999999   89999999999999998654 


Q ss_pred             ------ceEEeecccccccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhh
Q 044211          180 ------VAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNE  238 (292)
Q Consensus       180 ------~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~  238 (292)
                            .++++|||++.......     ...++..|++|+....       +     |++  |++ +...|+..... .+
T Consensus       156 ~~~~~~~~kl~d~g~~~~~~~~~-----~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-~~  229 (274)
T cd05076         156 AEGTSPFIKLSDPGVSFTALSRE-----ERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTP-SE  229 (274)
T ss_pred             ccCccceeeecCCcccccccccc-----ccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccCh-HH
Confidence                  38999999986543221     2345667877774432       2     877  775 44444432211 11


Q ss_pred             hcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          239 IIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      . ..........+.  ...+.+.+++.+||+.+|++|| +.++++.|.
T Consensus       230 ~-~~~~~~~~~~~~--~~~~~~~~li~~cl~~~p~~Rps~~~il~~L~  274 (274)
T cd05076         230 K-ERFYEKKHRLPE--PSCKELATLISQCLTYEPTQRPSFRTILRDLT  274 (274)
T ss_pred             H-HHHHHhccCCCC--CCChHHHHHHHHHcccChhhCcCHHHHHHhhC
Confidence            0 000111111111  2335789999999999999999 999998873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=1.2e-32  Score=231.81  Aligned_cols=227  Identities=17%  Similarity=0.193  Sum_probs=174.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|....       +++.||+|.+..........+.+|+.++++++||||+++++++...+..++|+||++++
T Consensus        19 ~g~~g~vy~~~~~~-------~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~   91 (267)
T cd06646          19 SGTYGDVYKARNLH-------TGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGG   91 (267)
T ss_pred             cCCCeEEEEEEECC-------CCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCC
Confidence            89999999999865       88999999997654445567889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.       ....+++..+..++.|++.||.|||   ..+++|+|++|+||+++.++.++|+|||++..+.....
T Consensus        92 ~L~~~~~-------~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~  161 (267)
T cd06646          92 SLQDIYH-------VTGPLSELQIAYVCRETLQGLAYLH---SKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIA  161 (267)
T ss_pred             cHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEECcCccceeeccccc
Confidence            9999983       3456899999999999999999999   89999999999999999999999999999986643221


Q ss_pred             cchhhhhcccccccccccC---------CC-----CeE--EEc-cchhhhhhccchhhhcc---cccccCCCCCCchHHH
Q 044211          198 HISELLSGLRAFDLARLNE---------DD-----GYV--VLL-DHIKKYFEEDRLNEIID---PLIMGDRSCSGNQQQL  257 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  257 (292)
                       ......|+..|++|+...         ++     |++  ||+ |.. |+...........   .... ..........+
T Consensus       162 -~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~-p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  238 (267)
T cd06646         162 -KRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQP-PMFDLHPMRALFLMSKSNFQ-PPKLKDKTKWS  238 (267)
T ss_pred             -ccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCC-CccccchhhhheeeecCCCC-CCCCccccccC
Confidence             123345777887777531         22     887  888 544 3333222211111   1111 11111112446


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      ..+.+++.+||+.+|++|| +.++++.|
T Consensus       239 ~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         239 STFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             HHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence            7899999999999999999 99998754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-33  Score=247.28  Aligned_cols=217  Identities=15%  Similarity=0.237  Sum_probs=186.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||+|+.+.++.       +++.+|||.+++.   .....+....|..++.-. +||.++.++.+|.++..+|+||||
T Consensus       378 kGsFGkV~lae~k~-------~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fvmey  450 (694)
T KOG0694|consen  378 RGSFGKVLLAELKG-------TNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFVMEY  450 (694)
T ss_pred             cCcCceEEEEEEcC-------CCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEEEEEe
Confidence            99999999999987       8999999999874   334567788888888887 599999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +.||++...+        ....+++..+..|+..|+.||.|||   +++||+||||.+|||+|.+|.+||+|||+++.-.
T Consensus       451 ~~Ggdm~~~~--------~~~~F~e~rarfyaAev~l~L~fLH---~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m  519 (694)
T KOG0694|consen  451 VAGGDLMHHI--------HTDVFSEPRARFYAAEVVLGLQFLH---ENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGM  519 (694)
T ss_pred             cCCCcEEEEE--------ecccccHHHHHHHHHHHHHHHHHHH---hcCceeeecchhheEEcccCcEEecccccccccC
Confidence            9999954444        4578999999999999999999999   9999999999999999999999999999998765


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... .+++++||+.|++|++....           ||+  ||+ |.. || ......++++.++..++..|.  -++.+
T Consensus       520 ~~g~-~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~-PF-~gddEee~FdsI~~d~~~yP~--~ls~e  594 (694)
T KOG0694|consen  520 GQGD-RTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGES-PF-PGDDEEEVFDSIVNDEVRYPR--FLSKE  594 (694)
T ss_pred             CCCC-ccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCC-CC-CCCCHHHHHHHHhcCCCCCCC--cccHH
Confidence            3333 45779999999999887655           999  999 643 43 444567778888887776665  77889


Q ss_pred             HHHHHhHhcCCCCCCCC-H
Q 044211          260 FAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~  277 (292)
                      ..+++.+.|..||++|- +
T Consensus       595 a~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  595 AIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             HHHHHHHHhccCcccccCC
Confidence            99999999999999999 7

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=3.7e-33  Score=233.97  Aligned_cols=230  Identities=19%  Similarity=0.269  Sum_probs=171.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||+|........+......|++|.+........+.+.+|..+++.++||||+++++++..+...++||||+++|
T Consensus         5 ~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~g   84 (258)
T cd05078           5 QGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEYVKFG   84 (258)
T ss_pred             cccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEecCCCC
Confidence            79999999998753111112234569999987655455677899999999999999999999999988999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc--------eEEeecccc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV--------AKLFDFSFS  189 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~--------~kl~Dfg~a  189 (292)
                      +|.+++.      .....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.        ++++|||++
T Consensus        85 ~L~~~l~------~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~  155 (258)
T cd05078          85 SLDTYLK------KNKNLINISWKLEVAKQLAWALHFLE---DKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGIS  155 (258)
T ss_pred             cHHHHHh------cCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEecccccccCCCceEEecccccc
Confidence            9999993      22346889999999999999999999   899999999999999987665        699999998


Q ss_pred             cccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCch
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
                      ......     ....++..|++|+....       +     |++  +|+ |...++......... . ........+  .
T Consensus       156 ~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~~-~-~~~~~~~~~--~  226 (258)
T cd05078         156 ITVLPK-----EILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKL-Q-FYEDRHQLP--A  226 (258)
T ss_pred             cccCCc-----hhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHHH-H-HHHccccCC--C
Confidence            655432     23456777877775432       2     888  888 654443332221111 1 111111111  1


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      ..+..+.+++.+||+.||++|| +.++++.|+
T Consensus       227 ~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         227 PKWTELANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             CCcHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            3446799999999999999999 999999873

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.3e-33  Score=247.18  Aligned_cols=224  Identities=17%  Similarity=0.200  Sum_probs=193.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|+-|.|..|++..       +|+.+|||++...   .......+.+|+.+|+-+.||||++++++|.++..+|+|+||+
T Consensus        22 ~Gstg~vrlakh~~-------TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEyv   94 (786)
T KOG0588|consen   22 KGSTGCVRLAKHAE-------TGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEYV   94 (786)
T ss_pred             CCCCceehhhhccc-------ccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEec
Confidence            89999999999987       9999999998653   2234456889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|-|.+++-       ..+++++....+++.||+.|+.|+|   ..+|.||||||+|+|++..+++||+|||+|..-.+
T Consensus        95 ~gGELFdylv-------~kG~l~e~eaa~ff~QIi~gv~yCH---~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~  164 (786)
T KOG0588|consen   95 PGGELFDYLV-------RKGPLPEREAAHFFRQILDGVSYCH---AFNICHRDLKPENLLLDVKNNIKIADFGMASLEVP  164 (786)
T ss_pred             CCchhHHHHH-------hhCCCCCHHHHHHHHHHHHHHHHHh---hhcceeccCCchhhhhhcccCEeeeccceeecccC
Confidence            9999999993       4567999999999999999999999   99999999999999999998999999999976655


Q ss_pred             CCccchhhhhcccccccccccCCC------------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD------------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      +..  .+..+|.+.|.+||+....            |||  -|+....||. ++++..++..+-.|.+.+|.  ..+++.
T Consensus       165 gkl--LeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFd-DdNir~LLlKV~~G~f~MPs--~Is~ea  239 (786)
T KOG0588|consen  165 GKL--LETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFD-DDNIRVLLLKVQRGVFEMPS--NISSEA  239 (786)
T ss_pred             Ccc--ccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCC-CccHHHHHHHHHcCcccCCC--cCCHHH
Confidence            433  4667999999888776432            888  4554444554 67888888888888888775  888999


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++|+.+++..||..|. +.||++.
T Consensus       240 QdLLr~ml~VDp~~RiT~~eI~kH  263 (786)
T KOG0588|consen  240 QDLLRRMLDVDPSTRITTEEILKH  263 (786)
T ss_pred             HHHHHHHhccCccccccHHHHhhC
Confidence            9999999999999999 9999875

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=2.4e-32  Score=232.10  Aligned_cols=242  Identities=16%  Similarity=0.198  Sum_probs=177.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||+|.+....  ....++.||+|.++.... .....+.+|+.++..++||||+++++++......++++||+.+
T Consensus        15 ~G~~g~V~~~~~~~~~--~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e~~~~   92 (283)
T cd05091          15 EDRFGKVYKGHLFGTA--PGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSH   92 (283)
T ss_pred             CCCCCeEEEEEEecCC--CCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEEcCCC
Confidence            8999999999873100  001457899999975533 2345688999999999999999999999998899999999999


Q ss_pred             CChhHHhhhhCC---------CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          117 GSLADRIRIHHT---------PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       117 gsL~~~l~~~~~---------~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++|.+++.....         .......+++..+..++.|++.||.|||   ..+++|+||||+||++++++.+||+|||
T Consensus        93 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~kl~Dfg  169 (283)
T cd05091          93 SDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLS---SHHVVHKDLATRNVLVFDKLNVKISDLG  169 (283)
T ss_pred             CcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HcCccccccchhheEecCCCceEecccc
Confidence            999999842110         0112345888899999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCc-cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC
Q 044211          188 FSISIPEGET-HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       188 ~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (292)
                      ++........ .......+++.|++|+...      ++     |++  ||+ +...++.. ....+..+........+ .
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~-~~~~~~~~~i~~~~~~~-~  247 (283)
T cd05091         170 LFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCG-YSNQDVIEMIRNRQVLP-C  247 (283)
T ss_pred             cccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHcCCcCC-C
Confidence            9886643221 1122334466787776542      22     888  877 44434332 22223333322322221 1


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      +.+++..+.+++.+||+.+|++|| +.+|+..|+.
T Consensus       248 ~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         248 PDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             CCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence            246788899999999999999999 9999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-33  Score=241.64  Aligned_cols=234  Identities=18%  Similarity=0.208  Sum_probs=184.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchH-HHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTY-DCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|-||.|..+...        .+..||+|+++....... ..|.+|+.+|.+|+||||+.++|+|..++.+++++||+++
T Consensus       548 eGqFGEVhLCeve--------g~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEn  619 (807)
T KOG1094|consen  548 EGQFGEVHLCEVE--------GPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMEN  619 (807)
T ss_pred             CcccceeEEEEec--------CceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhc
Confidence            9999999999994        558999999988755444 7899999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++.+|.     .+.++.....+|+.||++||+||.   +.+++|||+.++|+|++.++++||+|||+++.+...+
T Consensus       620 GDLnqFl~ahe-----apt~~t~~~vsi~tqiasgmaYLe---s~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~  691 (807)
T KOG1094|consen  620 GDLNQFLSAHE-----LPTAETAPGVSICTQIASGMAYLE---SLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGD  691 (807)
T ss_pred             CcHHHHHHhcc-----CcccccchhHHHHHHHHHHHHHHH---hhchhhccccccceeecCcccEEecCcccccccccCC
Confidence            99999995442     222556667889999999999999   9999999999999999999999999999999887666


Q ss_pred             ccch-hhhhccccc------ccccccCCC-----CeE--EEc--cchhhhhhccc--hhhhcccccccCC---CCCCchH
Q 044211          197 THIS-ELLSGLRAF------DLARLNEDD-----GYV--VLL--DHIKKYFEEDR--LNEIIDPLIMGDR---SCSGNQQ  255 (292)
Q Consensus       197 ~~~~-~~~~g~~~y------~~~~~~~~~-----Gvi--el~--~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~  255 (292)
                      ++.. ...+-..+|      ..++++.++     |++  |++  .+..|+.+...  ..+.....+..+.   -...|.-
T Consensus       692 yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~  771 (807)
T KOG1094|consen  692 YYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPA  771 (807)
T ss_pred             ceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCc
Confidence            5543 233334455      556778777     887  777  55555544221  1111111121111   1122357


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      |+..+.++|.+||+.|-.+|| +.++...|++.
T Consensus       772 cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  772 CPQGLYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             CcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence            899999999999999999999 99999988764

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.7e-32  Score=229.56  Aligned_cols=226  Identities=18%  Similarity=0.279  Sum_probs=174.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||+|..         .++.||+|.+..... ..+++.+|+.++++++|+||+++++++...+..++|+||++++
T Consensus        16 ~g~~g~v~~~~~---------~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   85 (256)
T cd05039          16 KGEFGDVMLGDY---------RGQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKG   85 (256)
T ss_pred             cCCCceEEEEEe---------cCcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCC
Confidence            899999999998         789999999986643 5678999999999999999999999999888999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.++++..     ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||.+........
T Consensus        86 ~L~~~~~~~-----~~~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~  157 (256)
T cd05039          86 SLVDYLRSR-----GRAVITLAQQLGFALDVCEGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD  157 (256)
T ss_pred             cHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHHH---hCCccchhcccceEEEeCCCCEEEcccccccccccccc
Confidence            999999422     2236899999999999999999999   89999999999999999999999999999987632221


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                          ....+..|.+|+....      +     |++  +++ ....|+.. ............. .....+...++.+.++
T Consensus       158 ----~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l  231 (256)
T cd05039         158 ----SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR-IPLKDVVPHVEKG-YRMEAPEGCPPEVYKV  231 (256)
T ss_pred             ----cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHhcC-CCCCCccCCCHHHHHH
Confidence                1223445666664432      2     877  776 23333322 2222222211111 1111123556789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +.+||+.+|++|| +.+++..|+.+
T Consensus       232 i~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         232 MKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             HHHHhccChhhCcCHHHHHHHHhcC
Confidence            9999999999999 99999999763

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=1.1e-32  Score=242.80  Aligned_cols=226  Identities=12%  Similarity=0.137  Sum_probs=175.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.++..   .......+.+|+.+++.++||||+++++++...+..++||||+
T Consensus        53 ~G~~g~Vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv~Ey~  125 (370)
T cd05596          53 RGAFGEVQLVRHKS-------SKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYM  125 (370)
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEcCC
Confidence            89999999999875       8899999998642   2223345788999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.        ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.....
T Consensus       126 ~gg~L~~~l~--------~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~  194 (370)
T cd05596         126 PGGDLVNLMS--------NYDIPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDA  194 (370)
T ss_pred             CCCcHHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEcCCCCEEEEeccceeeccC
Confidence            9999999983        235788899999999999999999   89999999999999999999999999999987654


Q ss_pred             CCccchhhhhccccccccccc----------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccC--CCCCCch
Q 044211          195 GETHISELLSGLRAFDLARLN----------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD--RSCSGNQ  254 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~----------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  254 (292)
                      ..........|++.|++||+.          .++     |++  ||+ |+. |+.... ....+.......  ...+...
T Consensus       195 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~-Pf~~~~-~~~~~~~i~~~~~~~~~~~~~  272 (370)
T cd05596         195 NGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDT-PFYADS-LVGTYSKIMDHKNSLTFPDDI  272 (370)
T ss_pred             CCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCC-CcCCCC-HHHHHHHHHcCCCcCCCCCcC
Confidence            433333456789999888753          223     888  888 544 443322 111222222111  1112212


Q ss_pred             HHHHHHHHHHhHhcCCCCCC--CC-HHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVD--RP-MVDVAKK  283 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~--RP-~~el~~~  283 (292)
                      ..+..+.+++.+||+.+|.+  || +.+++..
T Consensus       273 ~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h  304 (370)
T cd05596         273 EISKQAKDLICAFLTDREVRLGRNGVDEIKSH  304 (370)
T ss_pred             CCCHHHHHHHHHHccChhhccCCCCHHHHhcC
Confidence            45778999999999999998  99 9998764

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.9e-32  Score=229.49  Aligned_cols=234  Identities=20%  Similarity=0.269  Sum_probs=173.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..    ....+..||+|.+..... ...+.+.+|+.+++++.|+||+++++++.. +..++|+||+++
T Consensus         5 ~G~~g~v~~~~~~~----~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05060           5 HGNFGSVVKGVYLM----KSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKG-EPLMLVMELAPL   79 (257)
T ss_pred             ccCceeEEEeEeec----cCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcC-CceEEEEEeCCC
Confidence            79999999998753    000226899999876533 345678999999999999999999998764 467999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.......
T Consensus        80 ~~L~~~l~-------~~~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~  149 (257)
T cd05060          80 GPLLKYLK-------KRREIPVSDLKELAHQVAMGMAYLE---SKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGS  149 (257)
T ss_pred             CcHHHHHH-------hCCCCCHHHHHHHHHHHHHHHHHHh---hcCeeccCcccceEEEcCCCcEEeccccccceeecCC
Confidence            99999993       3346899999999999999999999   8899999999999999999999999999998775433


Q ss_pred             ccchhh--hhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 THISEL--LSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~~~~~--~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ......  ..++..|.+|+...      ++     |++  +|+ ....|+.... ..+........ .+.+.+..++..+
T Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l  227 (257)
T cd05060         150 DYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMK-GAEVIAMLESG-ERLPRPEECPQEI  227 (257)
T ss_pred             cccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCC-HHHHHHHHHcC-CcCCCCCCCCHHH
Confidence            221111  11234677776543      22     888  777 3454443322 12222211111 1112223567789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      .+++.+||+.+|++|| +.++++.|+++.
T Consensus       228 ~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         228 YSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             HHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence            9999999999999999 999999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2.3e-32  Score=229.80  Aligned_cols=229  Identities=20%  Similarity=0.286  Sum_probs=168.3

Q ss_pred             ccCCCeeEeeecCCCC-----ccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRP-----ISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~-----~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||+|.+..-.     ..+......|++|.+..........+.+|+.+++.++||||+++++++..+...++++|
T Consensus         5 ~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   84 (262)
T cd05077           5 RGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENIMVEE   84 (262)
T ss_pred             cCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCEEEEe
Confidence            7999999999863100     00011234689999876554455678899999999999999999999999889999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc-------eEEee
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV-------AKLFD  185 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~-------~kl~D  185 (292)
                      |+++|+|..++.      .....+++..++.++.|++.||.|||   +.+++|+||||+|||++.++.       ++++|
T Consensus        85 ~~~~~~l~~~~~------~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d  155 (262)
T cd05077          85 FVEFGPLDLFMH------RKSDVLTTPWKFKVAKQLASALSYLE---DKDLVHGNVCTKNILLAREGIDGECGPFIKLSD  155 (262)
T ss_pred             cccCCCHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHhh---hCCeECCCCCcccEEEecCCccCCCCceeEeCC
Confidence            999999998883      22356899999999999999999999   899999999999999987664       89999


Q ss_pred             cccccccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCC
Q 044211          186 FSFSISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       186 fg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      ||++......     ....++..|++|+....       +     |++  ||+ +...|+... ...+. ..........
T Consensus       156 ~g~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~-~~~~~-~~~~~~~~~~  228 (262)
T cd05077         156 PGIPITVLSR-----QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDK-TLAEK-ERFYEGQCML  228 (262)
T ss_pred             CCCCccccCc-----ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCc-chhHH-HHHHhcCccC
Confidence            9998755322     22346777888876531       1     888  776 444443221 11111 0001111111


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      .  ...+..+.+|+.+||+.||++|| +.+|++.|
T Consensus       229 ~--~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         229 V--TPSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             C--CCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence            1  12345789999999999999999 99999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1e-32  Score=238.80  Aligned_cols=220  Identities=17%  Similarity=0.200  Sum_probs=168.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC----CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES----KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||++....    +..+++.||+|.++..    .......+.+|+.+++.++||||+++++++..++..++||||
T Consensus         6 ~G~~g~V~~~~~~~----~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           6 KGGYGKVFQVRKVT----GADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ecCCeEEEEEEEcc----cCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            79999999998621    1116789999998643    122334578899999999999999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +.+|+|.+++.       ....+.+..+..++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||++....
T Consensus        82 ~~~~~L~~~~~-------~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  151 (323)
T cd05584          82 LSGGELFMHLE-------REGIFMEDTACFYLSEISLALEHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCKESI  151 (323)
T ss_pred             CCCchHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEeeCcCCeecc
Confidence            99999999993       3456788889999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......|+..|++||.....           |++  ||+ |+. |+... .....+.....+....+  ...++.
T Consensus       152 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~-pf~~~-~~~~~~~~~~~~~~~~~--~~~~~~  226 (323)
T cd05584         152 HEGT-VTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAP-PFTAE-NRKKTIDKILKGKLNLP--PYLTPE  226 (323)
T ss_pred             cCCC-cccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCC-CCCCC-CHHHHHHHHHcCCCCCC--CCCCHH
Confidence            3222 12335689999888865322           888  888 544 33322 22222333333333222  255678


Q ss_pred             HHHHHhHhcCCCCCCCC
Q 044211          260 FAHLIFECVNESPVDRP  276 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP  276 (292)
                      +.+++.+||+.||++||
T Consensus       227 ~~~li~~~l~~~p~~R~  243 (323)
T cd05584         227 ARDLLKKLLKRNPSSRL  243 (323)
T ss_pred             HHHHHHHHcccCHhHcC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-34  Score=229.64  Aligned_cols=227  Identities=19%  Similarity=0.263  Sum_probs=192.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++.++.       +|+.||||.+....  ..++++.|+.+++++..|+||++||.|.....+|+|||||-.|
T Consensus        43 EGSYGSV~KAIH~E-------sG~v~AIK~VPV~s--DLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAG  113 (502)
T KOG0574|consen   43 EGSYGSVHKAIHRE-------SGHVLAIKKVPVDT--DLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAG  113 (502)
T ss_pred             CCcchHHHHHHHhc-------cCcEEEEEecCccc--hHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCC
Confidence            99999999999987       99999999987653  4678999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      |+.+.++      ..+.++++..+..++...++||+|||   ...-+|||||+.|||++.+|.+||+|||.+-++... .
T Consensus       114 SiSDI~R------~R~K~L~E~EIs~iL~~TLKGL~YLH---~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDT-M  183 (502)
T KOG0574|consen  114 SISDIMR------ARRKPLSEQEISAVLRDTLKGLQYLH---DLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDT-M  183 (502)
T ss_pred             cHHHHHH------HhcCCccHHHHHHHHHHHHhHHHHHH---HHHHHHhhcccccEEEcccchhhhhhccccchhhhh-H
Confidence            9999995      34678999999999999999999999   889999999999999999999999999999887542 2


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLI  264 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  264 (292)
                      ...+...||+-|++|++.+..           |+.  ||....+|+..-.....++..-..+.+.+..+...+.++.+++
T Consensus       184 AKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi  263 (502)
T KOG0574|consen  184 AKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFI  263 (502)
T ss_pred             HhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeEeccCCCCCCCCChHhhhhHHHHHH
Confidence            334667899999999887654           888  9993344665555555555543444444444567788999999


Q ss_pred             hHhcCCCCCCCC-HHHHHHH
Q 044211          265 FECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       265 ~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+||-++|++|- +.++++.
T Consensus       264 ~~CLiK~PE~R~TA~~L~~H  283 (502)
T KOG0574|consen  264 RSCLIKKPEERKTALRLCEH  283 (502)
T ss_pred             HHHhcCCHHHHHHHHHHhhh
Confidence            999999999999 9888765

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.7e-32  Score=230.10  Aligned_cols=242  Identities=19%  Similarity=0.220  Sum_probs=177.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+....  ....+..||+|.+.... ......+.+|+.+++.++|+||+++++++......++|+||+++
T Consensus        16 ~g~~g~v~~~~~~~~~--~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~   93 (277)
T cd05032          16 QGSFGMVYEGLAKGVV--KGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAK   93 (277)
T ss_pred             CCCCceEEEEEEeccC--CCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEecCCC
Confidence            8999999999874200  01144789999987543 23345788999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCC---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQ---PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~---~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      |+|.+++.......   .....+++..++.++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++..+.
T Consensus        94 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~  170 (277)
T cd05032          94 GDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIY  170 (277)
T ss_pred             CCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccChheEEEcCCCCEEECCcccchhhc
Confidence            99999995432211   12345788899999999999999999   8999999999999999999999999999997664


Q ss_pred             CCCc-cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          194 EGET-HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       194 ~~~~-~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      .... .......++..|.+|+...      ++     |++  |++ ....|+... ......+....+... ..+..++.
T Consensus       171 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~-~~~~~~~~~~~~~~~-~~~~~~~~  248 (277)
T cd05032         171 ETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGL-SNEEVLKFVIDGGHL-DLPENCPD  248 (277)
T ss_pred             cCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccC-CHHHHHHHHhcCCCC-CCCCCCCH
Confidence            4322 1222334566776666432      22     888  777 344444322 222222222222211 11235678


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      .+.+++.+||+.+|++|| +.+++..|++
T Consensus       249 ~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  277 (277)
T cd05032         249 KLLELMRMCWQYNPKMRPTFLEIVSSLKD  277 (277)
T ss_pred             HHHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence            899999999999999999 9999998863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=2.4e-32  Score=231.41  Aligned_cols=242  Identities=18%  Similarity=0.210  Sum_probs=176.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+....  ....+..||+|.++... .....++.+|+.+++.++|+||+++++++......++|+||+++
T Consensus        16 ~G~~g~v~~~~~~~~~--~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~   93 (277)
T cd05062          16 QGSFGMVYEGIAKGVV--KDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTR   93 (277)
T ss_pred             cccCCeEEEEEeccCC--CCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCeEEEEecCCC
Confidence            8999999999863110  01245789999986532 23445688999999999999999999999988899999999999


Q ss_pred             CChhHHhhhhCCCC---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQ---PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~---~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      |+|.+++.......   .....+++..+..++.|++.||.|||   +.+++|+||||+||++++++.++|+|||++....
T Consensus        94 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~  170 (277)
T cd05062          94 GDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIY  170 (277)
T ss_pred             CCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCcchheEEEcCCCCEEECCCCCccccC
Confidence            99999995432111   11245678889999999999999999   8999999999999999999999999999987654


Q ss_pred             CCCccc-hhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          194 EGETHI-SELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       194 ~~~~~~-~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ...... .....++..|++|+....      +     |++  ||+ +...|+... ......+.......+. .+..++.
T Consensus       171 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~-~~~~~~~~~~~~~~~~-~~~~~~~  248 (277)
T cd05062         171 ETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGM-SNEQVLRFVMEGGLLD-KPDNCPD  248 (277)
T ss_pred             CcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHcCCcCC-CCCCCCH
Confidence            332211 122344667877776432      2     887  887 444444322 2222222212221111 1135677


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      .+.+++.+||+.||++|| +.|+++.|++
T Consensus       249 ~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         249 MLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence            899999999999999999 9999998863

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=1.3e-32  Score=238.14  Aligned_cols=219  Identities=17%  Similarity=0.196  Sum_probs=167.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHH-HHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIV-YASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~-~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||+||+|....       +++.||+|.+...   .......+..|.. +++.++||||+++++++...+..++||||
T Consensus         5 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~   77 (323)
T cd05575           5 KGSFGKVLLAKHKA-------DGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDY   77 (323)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcC
Confidence            79999999999976       8999999998643   1222344555554 56778999999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|..++.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++....
T Consensus        78 ~~~g~L~~~l~-------~~~~~~~~~~~~~~~qi~~~l~~lH---~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~  147 (323)
T cd05575          78 VNGGELFFHLQ-------RERSFPEPRARFYAAEIASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGI  147 (323)
T ss_pred             CCCCCHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeccCCCcccc
Confidence            99999999883       3456889999999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ... .......|++.|++||....      +     |++  +|+ |.. |+... ...+..+.........+  ...+..
T Consensus       148 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~-pf~~~-~~~~~~~~i~~~~~~~~--~~~~~~  222 (323)
T cd05575         148 EHS-KTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLP-PFYSR-DTAEMYDNILNKPLRLK--PNISVS  222 (323)
T ss_pred             cCC-CccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCC-CCCCC-CHHHHHHHHHcCCCCCC--CCCCHH
Confidence            222 12234568889988875432      2     888  888 543 44322 22233332232222222  245678


Q ss_pred             HHHHHhHhcCCCCCCCC-HH
Q 044211          260 FAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~  278 (292)
                      +.+++.+||+.||.+|| +.
T Consensus       223 ~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         223 ARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             HHHHHHHHhhcCHHhCCCCC
Confidence            99999999999999999 74

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=9.5e-33  Score=234.92  Aligned_cols=219  Identities=15%  Similarity=0.201  Sum_probs=168.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++.+..       +++.||+|.+....   ......+.+|+.+++.++|+||+++++++...+..++|+||+
T Consensus        10 ~G~~g~V~~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~~   82 (285)
T cd05631          10 KGGFGEVCACQVRA-------TGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIM   82 (285)
T ss_pred             cCCCEEEEEEEEec-------CCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEec
Confidence            89999999999865       89999999986432   222345789999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++...     ....+++..+..++.|++.||.|||   +.+++||||||+|||+++++.++|+|||++.....
T Consensus        83 ~~g~L~~~~~~~-----~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~  154 (285)
T cd05631          83 NGGDLKFHIYNM-----GNPGFDEQRAIFYAAELCCGLEDLQ---RERIVYRDLKPENILLDDRGHIRISDLGLAVQIPE  154 (285)
T ss_pred             CCCcHHHHHHhh-----CCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCC
Confidence            999999888322     2346899999999999999999999   89999999999999999999999999999987643


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccc--hhhhcccccc-cCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDR--LNEIIDPLIM-GDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~  257 (292)
                      ...  .....|+..|++|++...      +     |++  +|+ |+. |+.....  ....+...+. .....+  ...+
T Consensus       155 ~~~--~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~--~~~s  229 (285)
T cd05631         155 GET--VRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQS-PFRKRKERVKREEVDRRVKEDQEEYS--EKFS  229 (285)
T ss_pred             CCe--ecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCC-CCCCCCcchhHHHHHHHhhcccccCC--ccCC
Confidence            322  233568899988876532      2     888  888 544 4332211  1111111111 111111  2456


Q ss_pred             HHHHHHHhHhcCCCCCCCC
Q 044211          258 QAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP  276 (292)
                      ..+.+|+.+||+.||.+||
T Consensus       230 ~~~~~li~~~l~~~P~~R~  248 (285)
T cd05631         230 EDAKSICRMLLTKNPKERL  248 (285)
T ss_pred             HHHHHHHHHHhhcCHHHhc
Confidence            7899999999999999998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.1e-32  Score=233.94  Aligned_cols=224  Identities=14%  Similarity=0.194  Sum_probs=171.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||+||++.+..       +++.||+|.+....   ....+.+..|+.++++++|+||+++.+++......++||||+
T Consensus         3 ~G~~g~Vy~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~   75 (280)
T cd05608           3 KGGFGEVSACQMRA-------TGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIM   75 (280)
T ss_pred             CCCceeEEEEEEcc-------CCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCC
Confidence            69999999999875       88999999986432   223356788999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|...+....   .....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.++|+|||++..+..
T Consensus        76 ~~g~L~~~~~~~~---~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  149 (280)
T cd05608          76 NGGDLRYHIYNVD---EENPGFPEPRACFYTAQIISGLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKD  149 (280)
T ss_pred             CCCCHHHHHHhcc---ccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCccceecCC
Confidence            9999998874221   23457899999999999999999999   89999999999999999999999999999976654


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccc---hhhhcccccccCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDR---LNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      .... .....|++.|++|+....      +     |++  +|+ |+. |+.....   ...............+  ...+
T Consensus       150 ~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  225 (280)
T cd05608         150 GQSK-TKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARG-PFRARGEKVENKELKQRILNDSVTYP--DKFS  225 (280)
T ss_pred             CCcc-ccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCC-CCCCCCcchhHHHHHHhhcccCCCCc--ccCC
Confidence            3221 233467888988876432      2     888  888 544 3322111   1111222222221111  3567


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HH
Q 044211          258 QAFAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~  278 (292)
                      ..+.+++.+||+.||++|| +.
T Consensus       226 ~~~~~li~~~l~~~P~~R~~~~  247 (280)
T cd05608         226 PASKSFCEALLAKDPEKRLGFR  247 (280)
T ss_pred             HHHHHHHHHHhcCCHHHhcCCC
Confidence            7899999999999999999 64

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=5.8e-33  Score=240.18  Aligned_cols=220  Identities=17%  Similarity=0.253  Sum_probs=170.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       +++.||+|.+...   .......+..|..++..+ +||||+++++++...+..++||||
T Consensus         5 ~G~~g~Vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~   77 (321)
T cd05591           5 KGSFGKVMLAELKG-------TDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEY   77 (321)
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeC
Confidence            79999999999865       7889999998753   223445677888988876 799999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|...+.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++....
T Consensus        78 ~~~~~L~~~l~-------~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~  147 (321)
T cd05591          78 VNGGDLMFQIQ-------RSRKFDEPRSRFYAAEVTLALMFLH---RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGI  147 (321)
T ss_pred             CCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeecccceecc
Confidence            99999999883       3456889999999999999999999   8999999999999999999999999999987643


Q ss_pred             CCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......|+..|++|+....      +     |++  +|+ |+. |+.. ......+.....+....+.  ..+..
T Consensus       148 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~-Pf~~-~~~~~~~~~i~~~~~~~p~--~~~~~  222 (321)
T cd05591         148 LNGV-TTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQP-PFEA-DNEDDLFESILHDDVLYPV--WLSKE  222 (321)
T ss_pred             cCCc-cccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCC-CCCC-CCHHHHHHHHHcCCCCCCC--CCCHH
Confidence            3222 1234568889988875432      2     888  888 543 4332 2223333333333322222  45668


Q ss_pred             HHHHHhHhcCCCCCCCC-HHH
Q 044211          260 FAHLIFECVNESPVDRP-MVD  279 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~e  279 (292)
                      +.+++.+||+.||++|| ..+
T Consensus       223 ~~~ll~~~L~~dp~~R~~~~~  243 (321)
T cd05591         223 AVSILKAFMTKNPNKRLGCVA  243 (321)
T ss_pred             HHHHHHHHhccCHHHcCCCCC
Confidence            99999999999999999 644

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=3.8e-32  Score=233.63  Aligned_cols=248  Identities=17%  Similarity=0.200  Sum_probs=181.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||++.+....+....+...||+|.++... ......+.+|+.+++++ +|+||+++++++...+..++|+||+.
T Consensus        28 ~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~  107 (307)
T cd05098          28 EGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYAS  107 (307)
T ss_pred             cCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEecCC
Confidence            99999999998642111112244679999997642 33456788999999999 79999999999999999999999999


Q ss_pred             CCChhHHhhhhCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          116 CGSLADRIRIHHTP---------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       116 ~gsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      +|+|.+++..+...         ......+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+||
T Consensus       108 ~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~~~~~~kL~df  184 (307)
T cd05098         108 KGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADF  184 (307)
T ss_pred             CCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHHheEEcCCCcEEECCC
Confidence            99999999644221         112346888999999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCccc-hhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          187 SFSISIPEGETHI-SELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       187 g~a~~~~~~~~~~-~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      |++.......... .....++..|++|+...      ++     |++  +|+ +...|+.. ....+..... .......
T Consensus       185 g~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~-~~~~~~~~~~-~~~~~~~  262 (307)
T cd05098         185 GLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPG-VPVEELFKLL-KEGHRMD  262 (307)
T ss_pred             cccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCc-CCHHHHHHHH-HcCCCCC
Confidence            9987664322111 11122345677776443      22     888  877 44444332 2222222221 1121222


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+..++..+.+++.+||..+|++|| +.++++.|+++...
T Consensus       263 ~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         263 KPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             CCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence            2235677899999999999999999 99999999997653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=2.3e-32  Score=237.35  Aligned_cols=227  Identities=14%  Similarity=0.083  Sum_probs=175.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.++..   .......+.+|+.+++.++|+||+++++++...+..++||||+
T Consensus        11 ~G~~g~Vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   83 (330)
T cd05601          11 RGHFGEVQVVREKA-------TGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQ   83 (330)
T ss_pred             eccCEEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEECCC
Confidence            89999999999875       8899999998753   2234456888999999999999999999999989999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.++++++      ...+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++..+..
T Consensus        84 ~~~~L~~~l~~~------~~~l~~~~~~~~~~qi~~aL~~lH---~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~  154 (330)
T cd05601          84 PGGDLLSLLNRY------EDQFDEDMAQFYLAELVLAIHSVH---QMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTA  154 (330)
T ss_pred             CCCCHHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEcccCchHheEECCCCCEEeccCCCCeECCC
Confidence            999999999422      356899999999999999999999   89999999999999999999999999999987755


Q ss_pred             CCccchhhhhcccccccccccC------------CC-----CeE--EEc-cchhhhhhccchhhhcccccccC--CCCCC
Q 044211          195 GETHISELLSGLRAFDLARLNE------------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD--RSCSG  252 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~------------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  252 (292)
                      ..........|++.|++||+..            ++     |++  +|+ |+. |+..... ...+...+...  ...+.
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~-Pf~~~~~-~~~~~~i~~~~~~~~~~~  232 (330)
T cd05601         155 NKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRS-PFHEGTS-AKTYNNIMNFQRFLKFPE  232 (330)
T ss_pred             CCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCC-CCCCCCH-HHHHHHHHcCCCccCCCC
Confidence            4433334456889998887643            22     988  888 544 4332221 11111111111  11111


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ....+..+.+|+.+||+ +|.+|| +.+++..
T Consensus       233 ~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h  263 (330)
T cd05601         233 DPKVSSDFLDLIQSLLC-GQKERLGYEGLCCH  263 (330)
T ss_pred             CCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCC
Confidence            12456789999999998 999999 9998753

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=3.4e-32  Score=229.46  Aligned_cols=232  Identities=16%  Similarity=0.247  Sum_probs=174.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCC---eEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQE---RPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~---~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       ++   ..||+|.++.. .......+..|+..++.++||||+++++++......++|+||
T Consensus        14 ~g~~g~vy~~~~~~-------~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~   86 (269)
T cd05065          14 AGEFGEVCRGRLKL-------PGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEF   86 (269)
T ss_pred             CCCCCeEEEEEEec-------CCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEec
Confidence            89999999999853       33   36999998764 333456799999999999999999999999998899999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +.+|+|.++++.      ....+++..++.++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++....
T Consensus        87 ~~~~~L~~~l~~------~~~~~~~~~~~~i~~~l~~al~~lH---~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~  157 (269)
T cd05065          87 MENGALDSFLRQ------NDGQFTVIQLVGMLRGIAAGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLE  157 (269)
T ss_pred             CCCCcHHHHHhh------CCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccChheEEEcCCCcEEECCCccccccc
Confidence            999999999932      2356889999999999999999999   8999999999999999999999999999987664


Q ss_pred             CCCccch--hhhhc--ccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchH
Q 044211          194 EGETHIS--ELLSG--LRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQ  255 (292)
Q Consensus       194 ~~~~~~~--~~~~g--~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (292)
                      .......  ....+  +..|.+|++...      +     |++  |++ ....|+.... ........ ....+.+.+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~-~~~~~~~i-~~~~~~~~~~~  235 (269)
T cd05065         158 DDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS-NQDVINAI-EQDYRLPPPMD  235 (269)
T ss_pred             cCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCC-HHHHHHHH-HcCCcCCCccc
Confidence            3322111  11111  335666665432      2     877  766 2344443322 12222211 11222222246


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      ++..+.+++.+||+.+|++|| +.+++..|+++
T Consensus       236 ~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         236 CPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            778899999999999999999 99999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=3.3e-32  Score=230.97  Aligned_cols=242  Identities=20%  Similarity=0.228  Sum_probs=179.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++.....  ....++..+|+|.+..........+.+|+.+++.++|+||+++++++...+..++++||+++|
T Consensus        15 ~g~~g~v~~~~~~~~--~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   92 (280)
T cd05092          15 EGAFGKVFLAECHNL--LPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHG   92 (280)
T ss_pred             CccCCeEEEeEEecC--CCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEecCCCC
Confidence            899999999964210  011156789999988765555678999999999999999999999999988999999999999


Q ss_pred             ChhHHhhhhCCC--------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          118 SLADRIRIHHTP--------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       118 sL~~~l~~~~~~--------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      +|.+++..+...        ......+++..+..++.|++.|++|||   ..+++|+||+|+||++++++.+||+|||++
T Consensus        93 ~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~nil~~~~~~~kL~dfg~~  169 (280)
T cd05092          93 DLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLA---SLHFVHRDLATRNCLVGQGLVVKIGDFGMS  169 (280)
T ss_pred             CHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHH---HCCeecccccHhhEEEcCCCCEEECCCCce
Confidence            999999644311        112246889999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCcc-chhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCch
Q 044211          190 ISIPEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       190 ~~~~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
                      ......... ......++..|.+|+...      ++     |++  ||+ +...|+..... ....+....+... ..+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-~~~~~~~~~~~~~-~~~~  247 (280)
T cd05092         170 RDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSN-TEAIECITQGREL-ERPR  247 (280)
T ss_pred             eEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCH-HHHHHHHHcCccC-CCCC
Confidence            765433221 122233456787776433      22     888  877 34545433221 2222222222211 1123


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      .+++.+.+++.+||+.||++|| +.+|++.|++
T Consensus       248 ~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~~  280 (280)
T cd05092         248 TCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA  280 (280)
T ss_pred             CCCHHHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence            5677899999999999999999 9999998863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=3.8e-32  Score=230.38  Aligned_cols=234  Identities=18%  Similarity=0.223  Sum_probs=173.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCe----EEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQER----PVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~----~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||+||+|.+..       +++    .||+|.++.. .......+.+|+.+++.+.|+||+++++++.. ...++++|
T Consensus        17 ~G~~g~vy~~~~~~-------~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~l~~~   88 (279)
T cd05109          17 SGAFGTVYKGIWIP-------DGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STVQLVTQ   88 (279)
T ss_pred             CCCCceEEEEEEec-------CCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCcEEEEE
Confidence            89999999998753       444    5899998754 33345678899999999999999999999875 45789999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+++|+|.+++.      .....+++..++.++.|++.||.|||   +.+++|+||||+||++++++.+||+|||++...
T Consensus        89 ~~~~g~l~~~l~------~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~  159 (279)
T cd05109          89 LMPYGCLLDYVR------ENKDRIGSQDLLNWCVQIAKGMSYLE---EVRLVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (279)
T ss_pred             cCCCCCHHHHHh------hccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCCcEEECCCCceeec
Confidence            999999999993      22346899999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCccc-hhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          193 PEGETHI-SELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       193 ~~~~~~~-~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ....... .....++..|++|+...      ++     |++  ||+. ...|+. .......... +......+.+..++
T Consensus       160 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~-~~~~~~~~~~-~~~~~~~~~~~~~~  237 (279)
T cd05109         160 DIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYD-GIPAREIPDL-LEKGERLPQPPICT  237 (279)
T ss_pred             ccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHH-HHCCCcCCCCccCC
Confidence            4332211 11123345676666543      22     887  7763 333332 2111111111 11111111123567


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ..+.+++.+||+.||++|| +.++++.|+.+..+
T Consensus       238 ~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05109         238 IDVYMIMVKCWMIDSECRPRFRELVDEFSRMARD  271 (279)
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence            7899999999999999999 99999999988654

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=3e-32  Score=228.20  Aligned_cols=239  Identities=21%  Similarity=0.306  Sum_probs=180.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||+|.....    ...+..|++|.++..... ....+.+|+..++.++|+||+++++++......++++||+++
T Consensus         5 ~g~~g~v~~~~~~~~----~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           5 EGAFGEVYKGKLKGK----DGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             cCCceEEEEEEEecC----CCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            699999999998630    012889999999765333 357889999999999999999999999998899999999999


Q ss_pred             CChhHHhhhhCCC--CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          117 GSLADRIRIHHTP--QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       117 gsL~~~l~~~~~~--~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|.+++......  ......+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||.+.....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~  157 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYD  157 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHH---cCCcccCccCcceEEECCCCcEEEccccccccccc
Confidence            9999999422100  011477999999999999999999999   89999999999999999999999999999987754


Q ss_pred             CCc-cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          195 GET-HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       195 ~~~-~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ... .......++..|.+|+....      +     |++  +|+ +...|+... ......+....+.. ...+..++..
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~  235 (262)
T cd00192         158 DDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGL-SNEEVLEYLRKGYR-LPKPEYCPDE  235 (262)
T ss_pred             ccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHcCCC-CCCCccCChH
Confidence            331 11233446677877775432      2     887  777 434333322 22222222222221 1222356789


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      +.+++.+||+.||.+|| +.++++.|+
T Consensus       236 ~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         236 LYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             HHHHHHHHccCCcccCcCHHHHHHhhC
Confidence            99999999999999999 999999874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-32  Score=242.98  Aligned_cols=230  Identities=18%  Similarity=0.209  Sum_probs=192.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|.||+||.|.+..       +...+|||.+........+.+.+|+.+-++|+|.|||+++|++..++.+-+.||-++||
T Consensus       585 KGTYG~VYA~RD~~-------tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGG  657 (1226)
T KOG4279|consen  585 KGTYGTVYAARDMD-------TQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGG  657 (1226)
T ss_pred             cCceeEEEeecccc-------ceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCC
Confidence            99999999999874       66789999998776667788999999999999999999999999888888999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec-CCCceEEeecccccccCCCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN-EENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~-~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ||.++++..    ..+..=.+..+-.+..||+.||.|||   ...|+|||||-.|+||+ -.|.+||+|||.++.+.. -
T Consensus       658 SLSsLLrsk----WGPlKDNEstm~fYtkQILeGLkYLH---en~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAg-i  729 (1226)
T KOG4279|consen  658 SLSSLLRSK----WGPLKDNESTMNFYTKQILEGLKYLH---ENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAG-I  729 (1226)
T ss_pred             cHHHHHHhc----cCCCccchhHHHHHHHHHHHHhhhhh---hcceeeccccCCcEEEeeccceEEecccccchhhcc-C
Confidence            999999522    12223377888999999999999999   99999999999999998 679999999999988753 3


Q ss_pred             ccchhhhhcccccccccccCCC-------------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNEDD-------------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~~-------------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      ....+.+.||..||+|++.++.             ||+  ||.+.++||.+-++....+-..-.....++-|.+...+..
T Consensus       730 nP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP~iPeelsaeak  809 (1226)
T KOG4279|consen  730 NPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHPPIPEELSAEAK  809 (1226)
T ss_pred             CccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhcceecCCCCcHHHHHHHH
Confidence            3456788999999999998876             888  9995566888877766555443322222333368899999


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+|.+|+..||.+|| +.+++.
T Consensus       810 ~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  810 NFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             HHHHHHcCCCcccCccHHHhcc
Confidence            999999999999999 999875

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=4.7e-32  Score=230.34  Aligned_cols=241  Identities=20%  Similarity=0.280  Sum_probs=176.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..   .+...+..|++|.+.... ......+.+|+.+++.++||||+++++++......+++|||+.+
T Consensus        15 ~g~~g~vy~~~~~~---~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~   91 (283)
T cd05090          15 ECAFGKIYKGHLYL---PGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQ   91 (283)
T ss_pred             ccCCcceEEEEEec---CCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEcCCC
Confidence            89999999998521   011156789999987543 33446788999999999999999999999998999999999999


Q ss_pred             CChhHHhhhhCCC----------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          117 GSLADRIRIHHTP----------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       117 gsL~~~l~~~~~~----------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      ++|.+++......          ......+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+||
T Consensus        92 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~nili~~~~~~kl~df  168 (283)
T cd05090          92 GDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLS---SHFFVHKDLAARNILIGEQLHVKISDL  168 (283)
T ss_pred             CcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hcCeehhccccceEEEcCCCcEEeccc
Confidence            9999998422110          011345788999999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCc-cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          187 SFSISIPEGET-HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       187 g~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      |++........ .......++..|++|++..      ++     |++  ||+ ....|+.... ............ ..+
T Consensus       169 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~-~~~~~~~~~~~~-~~~  246 (283)
T cd05090         169 GLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS-NQEVIEMVRKRQ-LLP  246 (283)
T ss_pred             cccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC-HHHHHHHHHcCC-cCC
Confidence            99986643322 1122233456677776543      22     887  887 3444543322 122222111111 111


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      .+..+++.+.+++.+||+.||++|| +.+|.+.|+.
T Consensus       247 ~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         247 CSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             CCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            2235677899999999999999999 9999998864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=4.6e-32  Score=227.50  Aligned_cols=229  Identities=18%  Similarity=0.247  Sum_probs=174.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        .+..||+|.+..... ....+.+|+.++++++|+|++++++++. ....+++|||+.++
T Consensus        16 ~g~~~~v~~~~~~--------~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~   85 (260)
T cd05070          16 NGQFGEVWMGTWN--------GNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYMSKG   85 (260)
T ss_pred             cccCceEEEEEec--------CCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEecCCC
Confidence            8999999999886        777899999876433 3456899999999999999999999875 45689999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..     .....+++..+..++.+++.||.|||   +.+++|+||+|+||++++++.++|+|||++........
T Consensus        86 ~L~~~~~~-----~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~  157 (260)
T cd05070          86 SLLDFLKD-----GEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEY  157 (260)
T ss_pred             cHHHHHHh-----cCCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEEeCCceEEeCCceeeeeccCccc
Confidence            99999932     12345889999999999999999999   89999999999999999999999999999987654332


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|++|++..      ++     |++  +|+ +...|+.... ..+..+..... ...+.+...+..+.++
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l  235 (260)
T cd05070         158 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMN-NREVLEQVERG-YRMPCPQDCPISLHEL  235 (260)
T ss_pred             ccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcC-CCCCCCCcCCHHHHHH
Confidence            2222233455687777542      22     888  777 4554543322 22222221111 1112223567789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      +.+||+.+|++|| +.++.+.|++
T Consensus       236 i~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         236 MLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             HHHHcccCcccCcCHHHHHHHHhc
Confidence            9999999999999 9999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=4e-32  Score=227.88  Aligned_cols=229  Identities=18%  Similarity=0.267  Sum_probs=174.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|...        +++.||+|.+..... ....+.+|+.++++++|+||+++++++. .+..++++||+.++
T Consensus        16 ~G~~g~v~~~~~~--------~~~~~a~K~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~   85 (260)
T cd05067          16 AGQFGEVWMGYYN--------GHTKVAIKSLKQGSM-SPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEYMENG   85 (260)
T ss_pred             cCccceEEeeecC--------CCceEEEEEecCCCC-cHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEcCCCC
Confidence            8999999999986        788999999876532 3467899999999999999999999864 55789999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..     ..+..+++..+..++.|++.||+|||   +.+++|+||+|+||++++++.++|+|||++........
T Consensus        86 ~L~~~~~~-----~~~~~~~~~~~~~i~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  157 (260)
T cd05067          86 SLVDFLKT-----PEGIKLTINKLIDMAAQIAEGMAFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEY  157 (260)
T ss_pred             CHHHHHHh-----cCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCc
Confidence            99999832     23456889999999999999999999   89999999999999999999999999999977653333


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|.+|++..      ++     |++  |++ ++..|+.... ........ ......+.+...+..+.++
T Consensus       158 ~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l  235 (260)
T cd05067         158 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMT-NPEVIQNL-ERGYRMPRPDNCPEELYEL  235 (260)
T ss_pred             ccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCC-hHHHHHHH-HcCCCCCCCCCCCHHHHHH
Confidence            3223334556777766532      22     877  777 3554543322 12221111 1111112223456789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      +.+||+.+|++|| +++++..|+.
T Consensus       236 i~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         236 MRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             HHHHccCChhhCCCHHHHHHHhhc
Confidence            9999999999999 9999999975

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.2e-32  Score=237.95  Aligned_cols=223  Identities=17%  Similarity=0.255  Sum_probs=171.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      .|+||.||+|.+..       +++.||+|.++..   .......+..|..++..+ +||||+++++++...+..++||||
T Consensus         5 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~   77 (318)
T cd05570           5 KGSFGKVLLAELKG-------TDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEY   77 (318)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcC
Confidence            79999999999875       7889999998753   223445677888999888 699999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|..++.       ....+++..+..++.|++.||.|||   +.+++|+||||+||++++++.+||+|||++....
T Consensus        78 ~~~~~L~~~~~-------~~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~  147 (318)
T cd05570          78 VNGGDLMFHIQ-------RSGRFDEPRARFYAAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGI  147 (318)
T ss_pred             CCCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEccCCCHHHeEECCCCcEEecccCCCeecC
Confidence            99999999883       3446899999999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......|+..|++|++...      +     |++  +|+ |+. |+.. .................+  ...+..
T Consensus       148 ~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~-pf~~-~~~~~~~~~i~~~~~~~~--~~~~~~  222 (318)
T cd05570         148 LGGV-TTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQS-PFEG-DDEDELFQSILEDEVRYP--RWLSKE  222 (318)
T ss_pred             cCCC-cccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCC-CCCC-CCHHHHHHHHHcCCCCCC--CcCCHH
Confidence            2221 1233468888988876432      2     888  888 654 3322 222222222222222222  245678


Q ss_pred             HHHHHhHhcCCCCCCCC-H-----HHHHH
Q 044211          260 FAHLIFECVNESPVDRP-M-----VDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~-----~el~~  282 (292)
                      +.+++.+||+.||++|| +     .++++
T Consensus       223 ~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         223 AKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             HHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence            99999999999999999 8     66654

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=4.2e-32  Score=229.02  Aligned_cols=237  Identities=19%  Similarity=0.243  Sum_probs=176.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+...    ......|++|...... ....+.+.+|+.++++++||||+++++++.. ...++||||+++
T Consensus        16 ~g~~g~v~~~~~~~~----~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv~e~~~~   90 (270)
T cd05056          16 EGQFGDVYQGVYMSP----ENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIVMELAPL   90 (270)
T ss_pred             CccceeEEEEEEecC----CCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEEEEcCCC
Confidence            899999999987420    0023579999987654 3455679999999999999999999998875 567899999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++..      ....+++..+..++.+++.||.|||   +.+++|+||+|+||+++.++.++|+|||++.......
T Consensus        91 ~~L~~~l~~------~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~  161 (270)
T cd05056          91 GELRSYLQV------NKYSLDLASLILYSYQLSTALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDES  161 (270)
T ss_pred             CcHHHHHHh------CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccChheEEEecCCCeEEccCceeeeccccc
Confidence            999999942      2345899999999999999999999   8999999999999999999999999999998765443


Q ss_pred             ccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      ........++..|++|+...      ++     |++  |++ ....|+..... .+.......+... +.+..++..+.+
T Consensus       162 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~  239 (270)
T cd05056         162 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKN-NDVIGRIENGERL-PMPPNCPPTLYS  239 (270)
T ss_pred             ceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCH-HHHHHHHHcCCcC-CCCCCCCHHHHH
Confidence            32222233445677776432      22     777  766 23334332221 1211211122211 112366789999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ++.+||..+|++|| +.+++..|++++..
T Consensus       240 li~~~l~~~P~~Rpt~~~~~~~l~~~~~~  268 (270)
T cd05056         240 LMTKCWAYDPSKRPRFTELKAQLSDILQE  268 (270)
T ss_pred             HHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            99999999999999 99999999998764

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=5.3e-32  Score=228.09  Aligned_cols=235  Identities=17%  Similarity=0.227  Sum_probs=174.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....    .......+|+|.++.. .......+.+|+.++++++|+||+++++++...+..++||||+++
T Consensus        15 ~g~~g~vy~~~~~~----~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   90 (268)
T cd05063          15 AGEFGEVFRGILKM----PGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYMEN   90 (268)
T ss_pred             CCCCccEEEEEEec----CCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEEEEcCCC
Confidence            89999999999853    0002237999998754 233456789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++..      ....+++..+..++.|++.|+.|||   +.+++|+||+|+||+++.++.+||+|||++.......
T Consensus        91 ~~L~~~~~~------~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~  161 (268)
T cd05063          91 GALDKYLRD------HDGEFSSYQLVGMLRGIAAGMKYLS---DMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDP  161 (268)
T ss_pred             CCHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEEcCCCcEEECCCccceeccccc
Confidence            999999942      2356889999999999999999999   8999999999999999999999999999997664322


Q ss_pred             ccchh--hhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 THISE--LLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~~~~--~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      .....  ....+..|++|++..      ++     |++  |++ ....|+..... ........... ..+.+.+++..+
T Consensus       162 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~-~~~~~~i~~~~-~~~~~~~~~~~~  239 (268)
T cd05063         162 EGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN-HEVMKAINDGF-RLPAPMDCPSAV  239 (268)
T ss_pred             ccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH-HHHHHHHhcCC-CCCCCCCCCHHH
Confidence            21111  111234576676532      22     888  766 24444433221 11211111111 112223567889


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      .+++.+||+.+|++|| +.++++.|+++
T Consensus       240 ~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         240 YQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             HHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            9999999999999999 99999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=3.7e-32  Score=232.64  Aligned_cols=226  Identities=18%  Similarity=0.258  Sum_probs=175.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++....       +++.||+|.+..........+.+|+.+++.++|+||+++++++...+..++|+||++++
T Consensus        29 ~g~~g~v~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~  101 (297)
T cd06656          29 QGASGTVYTAIDIA-------TGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGG  101 (297)
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecccCCC
Confidence            89999999999754       89999999997655555567889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.        ...+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++........
T Consensus       102 ~L~~~~~--------~~~~~~~~~~~~~~~l~~~L~~LH---~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~  170 (297)
T cd06656         102 SLTDVVT--------ETCMDEGQIAAVCRECLQALDFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  170 (297)
T ss_pred             CHHHHHH--------hCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEECcCccceEccCCcc
Confidence            9999982        345788999999999999999999   89999999999999999999999999999876644322


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLI  264 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  264 (292)
                      . .....++..|.+|+....      +     |++  +++....|+...............+.++...+...+..+.+++
T Consensus       171 ~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  249 (297)
T cd06656         171 K-RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFL  249 (297)
T ss_pred             C-cCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHH
Confidence            1 223456777877765432      2     888  7773334443332222222211222222222245667889999


Q ss_pred             hHhcCCCCCCCC-HHHHHH
Q 044211          265 FECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       265 ~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+||+.+|++|| +.++++
T Consensus       250 ~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         250 NRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             HHHccCChhhCcCHHHHhc
Confidence            999999999999 999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=2.2e-32  Score=248.65  Aligned_cols=230  Identities=16%  Similarity=0.192  Sum_probs=178.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC--------cc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ--------IP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~--------~~  107 (292)
                      +|+||+||+|....       +++.||||.+...  .......+.+|+..+..++|+||++++..+...+        .+
T Consensus        42 ~G~fG~Vy~a~~~~-------~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i  114 (496)
T PTZ00283         42 SGATGTVLCAKRVS-------DGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMI  114 (496)
T ss_pred             cCCCEEEEEEEEcC-------CCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEE
Confidence            89999999999865       8999999998654  2334456889999999999999999988775432        25


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++||||+++|+|.++++...   .....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||
T Consensus       115 ~lV~Ey~~~gsL~~~l~~~~---~~~~~l~e~~~~~i~~qll~aL~~lH---~~~IiHrDLKP~NILl~~~~~vkL~DFG  188 (496)
T PTZ00283        115 ALVLDYANAGDLRQEIKSRA---KTNRTFREHEAGLLFIQVLLAVHHVH---SKHMIHRDIKSANILLCSNGLVKLGDFG  188 (496)
T ss_pred             EEEEeCCCCCcHHHHHHHhh---ccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEeCCCCEEEEecc
Confidence            79999999999999995332   23467899999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCc-cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC
Q 044211          188 FSISIPEGET-HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       188 ~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (292)
                      +++....... .......||+.|++||+....           |++  ||+ |+. |+. .......+...+.+...+. 
T Consensus       189 ls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~-Pf~-~~~~~~~~~~~~~~~~~~~-  265 (496)
T PTZ00283        189 FSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKR-PFD-GENMEEVMHKTLAGRYDPL-  265 (496)
T ss_pred             cCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCC-CCC-CCCHHHHHHHHhcCCCCCC-
Confidence            9987643221 123346789999888865432           888  888 544 332 2333344444343333221 


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +...++.+.+++.+||+.||.+|| +.+++..
T Consensus       266 ~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        266 PPSISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             CCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence            236678899999999999999999 9998764

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=4.5e-32  Score=229.77  Aligned_cols=241  Identities=20%  Similarity=0.254  Sum_probs=176.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..  ..+...+..||+|.+..... .....+.+|+.+++.++|+||+++++++......++||||+++
T Consensus        16 ~g~~g~vy~~~~~~--~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g   93 (277)
T cd05036          16 HGAFGEVYEGLYRG--RDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMAG   93 (277)
T ss_pred             CCCCCcEEEEEEec--CCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcEEEEecCCC
Confidence            89999999998841  00011356899998875432 2345689999999999999999999999998899999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC---ceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN---VAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~---~~kl~Dfg~a~~~~  193 (292)
                      ++|.+++...+........+++..++.++.|++.||.|||   ..+++|+||+|+||+++.++   .+||+|||++..+.
T Consensus        94 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~  170 (277)
T cd05036          94 GDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE---ENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIY  170 (277)
T ss_pred             CCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchheEEEeccCCCcceEeccCccccccC
Confidence            9999999655433333457899999999999999999999   88999999999999998654   59999999998764


Q ss_pred             CCCccc-hhhhhccccccccccc------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          194 EGETHI-SELLSGLRAFDLARLN------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       194 ~~~~~~-~~~~~g~~~y~~~~~~------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ...... ......+..|++|++.      .++     |++  ||+ +...|+... ......+....... ...+..++.
T Consensus       171 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~-~~~~~~~~~~~~~~-~~~~~~~~~  248 (277)
T cd05036         171 RASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGR-TNQEVMEFVTGGGR-LDPPKGCPG  248 (277)
T ss_pred             CccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHcCCc-CCCCCCCCH
Confidence            322211 1112224567666653      233     888  877 444444322 22222222221111 111235677


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      .+.+++.+||+.+|++|| +.++++.|+
T Consensus       249 ~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         249 PVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence            899999999999999999 999999886

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=2.2e-32  Score=237.00  Aligned_cols=222  Identities=15%  Similarity=0.157  Sum_probs=168.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHH-HHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIV-YASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~-~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|....       +++.||+|.+...   .......+..|.. +++.++||||+++++++..++..++||||
T Consensus         5 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~   77 (325)
T cd05604           5 KGSFGKVLLAKRKL-------DGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDF   77 (325)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcC
Confidence            79999999999875       8999999998643   2223345555655 46778999999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +.+|+|...+.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++....
T Consensus        78 ~~~~~L~~~l~-------~~~~~~~~~~~~~~~qi~~al~~lH---~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~  147 (325)
T cd05604          78 VNGGELFFHLQ-------RERSFPEPRARFYAAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCKEGI  147 (325)
T ss_pred             CCCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEeecCCcccCC
Confidence            99999998883       3457899999999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ... .......|+..|++||+...      +     |++  +|+ |.. |+.. .......+..+.......  +..+..
T Consensus       148 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~-pf~~-~~~~~~~~~~~~~~~~~~--~~~~~~  222 (325)
T cd05604         148 AQS-DTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLP-PFYC-RDVAEMYDNILHKPLVLR--PGASLT  222 (325)
T ss_pred             CCC-CCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCC-CCCC-CCHHHHHHHHHcCCccCC--CCCCHH
Confidence            221 12234568889988876432      2     888  888 654 4332 222233333332222222  145567


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVA  281 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~  281 (292)
                      +.+++.+||+.||.+|| +.+.+
T Consensus       223 ~~~ll~~ll~~~p~~R~~~~~~~  245 (325)
T cd05604         223 AWSILEELLEKDRQRRLGAKEDF  245 (325)
T ss_pred             HHHHHHHHhccCHHhcCCCCCCH
Confidence            88999999999999999 76433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=1.9e-32  Score=237.68  Aligned_cols=219  Identities=18%  Similarity=0.227  Sum_probs=167.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||++....       +++.||+|.++..   .......+..|..++.++ +||||+++++++...+..++||||
T Consensus         5 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~   77 (329)
T cd05618           5 RGSYAKVLLVRLKK-------TERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEY   77 (329)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeC
Confidence            79999999999875       8899999998753   223445677888888877 799999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|..++.       ....+++..+..++.|++.||.|||   ..+++||||||+||+++.++.+||+|||++....
T Consensus        78 ~~~~~L~~~~~-------~~~~l~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~  147 (329)
T cd05618          78 VNGGDLMFHMQ-------RQRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL  147 (329)
T ss_pred             CCCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCCEEEeeCCcccccc
Confidence            99999998883       3456899999999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhcc-------c-hhhhcccccccCCCCC
Q 044211          194 EGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEED-------R-LNEIIDPLIMGDRSCS  251 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~  251 (292)
                      .... ......|+..|++||+..      ++     |++  +|+ |+. |+....       . ...............+
T Consensus       148 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~-Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p  225 (329)
T cd05618         148 RPGD-TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS-PFDIVGSSDNPDQNTEDYLFQVILEKQIRIP  225 (329)
T ss_pred             CCCC-ccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCC-CCccCCCcCCcccccHHHHHHHHhcCCCCCC
Confidence            2221 123456889998887643      22     888  888 544 332100       0 0111111122222222


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-H
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~  277 (292)
                        ...+..+.+++.+||+.||++|| +
T Consensus       226 --~~~~~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         226 --RSLSVKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             --CCCCHHHHHHHHHHhcCCHHHcCCC
Confidence              25566889999999999999999 6

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=4.9e-32  Score=228.26  Aligned_cols=235  Identities=18%  Similarity=0.228  Sum_probs=173.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+...    ...+..||+|.++... ......+.+|+..+++++||||+++++++..++..++||||+++
T Consensus        14 ~g~~g~v~~~~~~~~----~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   89 (267)
T cd05066          14 AGEFGEVCSGRLKLP----GKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMEN   89 (267)
T ss_pred             ccCCCceEEEEEecC----CCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCC
Confidence            899999999987420    0023479999987542 23446789999999999999999999999998999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++..      ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++..+....
T Consensus        90 ~~L~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd05066          90 GSLDAFLRK------HDGQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  160 (267)
T ss_pred             CCHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeehhhchhcEEECCCCeEEeCCCCccccccccc
Confidence            999999942      2346889999999999999999999   8999999999999999999999999999998765432


Q ss_pred             ccchh--hhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 THISE--LLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~~~~--~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      .....  ...++..|++|+...      ++     |++  +++ ....|+.... ..+..+....+ ...+.+..+++.+
T Consensus       161 ~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~  238 (267)
T cd05066         161 EAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMS-NQDVIKAIEEG-YRLPAPMDCPAAL  238 (267)
T ss_pred             ceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCC-HHHHHHHHhCC-CcCCCCCCCCHHH
Confidence            21111  112234676666543      22     877  755 2333433221 11122211111 1122223567789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      .+++.+||+.+|.+|| +.++++.|+++
T Consensus       239 ~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         239 HQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             HHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            9999999999999999 99999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=4.3e-32  Score=255.09  Aligned_cols=241  Identities=16%  Similarity=0.201  Sum_probs=178.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.+....   ....+++.+|+.++++++||||+++++++..++..+++|||+
T Consensus        12 kGgfG~VYlA~d~~-------tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVMEY~   84 (932)
T PRK13184         12 KGGMGEVYLAYDPV-------CSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMPYI   84 (932)
T ss_pred             cCCCEEEEEEEECC-------CCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEEcC
Confidence            89999999999865       78999999986532   223457899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCC----CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          115 NCGSLADRIRIHHTP----QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~----~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      ++|+|.+++......    .......+...++.++.|++.||.|||   +.+++||||||+||+++.++.++|+|||++.
T Consensus        85 eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLH---s~GIIHRDLKPeNILLd~dg~vKLiDFGLAk  161 (932)
T PRK13184         85 EGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVH---SKGVLHRDLKPDNILLGLFGEVVILDWGAAI  161 (932)
T ss_pred             CCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHH---HCCccccCCchheEEEcCCCCEEEEecCcce
Confidence            999999998542111    111234567788999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCC-----------------ccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhh
Q 044211          191 SIPEGE-----------------THISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEI  239 (292)
Q Consensus       191 ~~~~~~-----------------~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~  239 (292)
                      ......                 ........||+.|++|+....      +     |++  ||+ |+. |+.........
T Consensus       162 ~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~-PF~~~~~~ki~  240 (932)
T PRK13184        162 FKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSF-PYRRKKGRKIS  240 (932)
T ss_pred             ecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCC-CCCCcchhhhh
Confidence            662111                 011123468999988886432      2     888  888 543 43322111111


Q ss_pred             cccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC--HHHHHHHHHHhhh
Q 044211          240 IDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP--MVDVAKKTQANVC  289 (292)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP--~~el~~~L~~l~~  289 (292)
                      ....+.......+..+.++.+.+++.+||+.||++||  +.++.+.|+...+
T Consensus       241 ~~~~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq  292 (932)
T PRK13184        241 YRDVILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHLQ  292 (932)
T ss_pred             hhhhccChhhccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            1111111111111125567899999999999999998  7788888887654

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=2.8e-32  Score=229.81  Aligned_cols=226  Identities=18%  Similarity=0.233  Sum_probs=172.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       ++..|++|.+........+.+.+|+.+++.++|+||+++++++...+..++++||++++
T Consensus        18 ~g~~g~v~~~~~~~-------~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   90 (268)
T cd06624          18 KGTYGIVYAARDLS-------TQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGG   90 (268)
T ss_pred             cCCceEEEEeEecC-------CCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEecCCCC
Confidence            89999999999764       77899999988765556678999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCC--CHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-CCceEEeecccccccCC
Q 044211          118 SLADRIRIHHTPQPQHEPL--LLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-ENVAKLFDFSFSISIPE  194 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l--~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~a~~~~~  194 (292)
                      +|.+++...      ...+  ++..+..++.|++.||.|||   ..+++|+||+|+||+++. ++.++|+|||++.....
T Consensus        91 ~L~~~l~~~------~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~  161 (268)
T cd06624          91 SLSALLRSK------WGPLKDNEQTIIFYTKQILEGLKYLH---DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAG  161 (268)
T ss_pred             CHHHHHHHh------cccCCCcHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCeEEEecchhheeccc
Confidence            999999422      1234  78888999999999999999   899999999999999986 67999999999876543


Q ss_pred             CCccchhhhhcccccccccccC--------CC-----CeE--EEc-cchhhhhhccchh-hhcccccccCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE--------DD-----GYV--VLL-DHIKKYFEEDRLN-EIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~--------~~-----Gvi--el~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ... ......|+..|.+|++..        ++     |++  +|+ |+ .|+....... ...........+. .+...+
T Consensus       162 ~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~-~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  238 (268)
T cd06624         162 INP-CTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGK-PPFIELGEPQAAMFKVGMFKIHPE-IPESLS  238 (268)
T ss_pred             CCC-ccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCC-CCCccccChhhhHhhhhhhccCCC-CCcccC
Confidence            221 122335677887777532        22     888  888 54 3443322111 1111111111111 113566


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+.+++.+||+.+|++|| +.+++.
T Consensus       239 ~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         239 AEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             HHHHHHHHHHcCCCchhCCCHHHHHh
Confidence            7899999999999999999 999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=4.7e-32  Score=235.87  Aligned_cols=247  Identities=18%  Similarity=0.254  Sum_probs=176.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecC-CcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLET-QIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~-~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..  -....+++.||+|+++... ....+.+..|+.++.++ +|+||+++++++... ...++++||+
T Consensus        17 ~G~fg~Vy~a~~~~--~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v~ey~   94 (337)
T cd05054          17 RGAFGKVIQASAFG--IEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEYC   94 (337)
T ss_pred             cCcCceEEeccccc--cccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCCEEEEEecC
Confidence            89999999997531  0011145789999987543 23345688999999999 899999999988754 4578899999


Q ss_pred             CCCChhHHhhhhCCCC------------------------------------------------------CCCCCCCHHH
Q 044211          115 NCGSLADRIRIHHTPQ------------------------------------------------------PQHEPLLLTH  140 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~------------------------------------------------------~~~~~l~~~~  140 (292)
                      ++++|.+++.......                                                      .....+++..
T Consensus        95 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  174 (337)
T cd05054          95 KFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLED  174 (337)
T ss_pred             CCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCCCHHH
Confidence            9999999985321100                                                      0023688999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCccc-hhhhhccccccccccc----
Q 044211          141 RLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHI-SELLSGLRAFDLARLN----  215 (292)
Q Consensus       141 ~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~~~-~~~~~g~~~y~~~~~~----  215 (292)
                      +..++.|++.||.|||   ..+|+||||||+|||++.++.++|+|||++..+....... .....++..|++|++.    
T Consensus       175 ~~~~~~qi~~aL~~lH---~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  251 (337)
T cd05054         175 LISYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKV  251 (337)
T ss_pred             HHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCC
Confidence            9999999999999999   8999999999999999999999999999998764433222 2234456678887743    


Q ss_pred             --CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          216 --EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       216 --~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                        .++     |++  ||+ ....|+..... .+.+...+........+...++.+.+++.+||+.+|++|| +.|+++.|
T Consensus       252 ~~~~~Di~SlGv~l~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l  330 (337)
T cd05054         252 YTTQSDVWSFGVLLWEIFSLGASPYPGVQI-DEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEIL  330 (337)
T ss_pred             CCccccHHHHHHHHHHHHHcCCCCCCCCCc-cHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence              233     888  877 34444432111 1111111111111111134567899999999999999999 99999999


Q ss_pred             HHhhhc
Q 044211          285 QANVCS  290 (292)
Q Consensus       285 ~~l~~~  290 (292)
                      +.+.+.
T Consensus       331 ~~~~~~  336 (337)
T cd05054         331 GDLLQE  336 (337)
T ss_pred             HHHHhc
Confidence            998654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.6e-32  Score=240.72  Aligned_cols=221  Identities=18%  Similarity=0.149  Sum_probs=167.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||++....       +++.||+|....      ..+.+|+.++++++||||+++++++......++|+|++. +
T Consensus       102 ~G~~g~V~~~~d~~-------~~~~vaiK~~~~------~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~  167 (391)
T PHA03212        102 PGAEGFAFACIDNK-------TCEHVVIKAGQR------GGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-T  167 (391)
T ss_pred             CCCCeEEEEEEECC-------CCCEEEEechhh------hhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-C
Confidence            89999999999876       889999997542      346789999999999999999999998889999999997 6


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|..++.       ....+++..++.++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++........
T Consensus       168 ~L~~~l~-------~~~~l~~~~~~~i~~qi~~aL~ylH---~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~  237 (391)
T PHA03212        168 DLYCYLA-------AKRNIAICDILAIERSVLRAIQYLH---ENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINA  237 (391)
T ss_pred             CHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHhEEEcCCCCEEEEeCCcccccccccc
Confidence            9988883       3456889999999999999999999   89999999999999999999999999999975433222


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc---------chhhhcc-------------
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED---------RLNEIID-------------  241 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~---------~~~~~~~-------------  241 (292)
                      .......||+.|++|++....           |++  ||+ |..+.+....         .+..++.             
T Consensus       238 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  317 (391)
T PHA03212        238 NKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDA  317 (391)
T ss_pred             cccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcch
Confidence            223345789999888865432           888  888 6543221110         0000000             


Q ss_pred             ---------ccc---c---cCCCCC-CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 ---------PLI---M---GDRSCS-GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 ---------~~~---~---~~~~~~-~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                               ...   .   ...+.. .....+..+.+|+.+||+.||.+|| +.|+++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~  375 (391)
T PHA03212        318 QANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLD  375 (391)
T ss_pred             hHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhc
Confidence                     000   0   000000 0013466899999999999999999 999985

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=4e-32  Score=229.72  Aligned_cols=242  Identities=15%  Similarity=0.187  Sum_probs=178.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||+|.....  ......+.|++|.+...... ....+.+|+.++++++|+||+++++++......++|+||+++
T Consensus        15 ~g~~g~v~~~~~~~~--~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (275)
T cd05046          15 RGEFGEVFLAKAKGI--EEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDL   92 (275)
T ss_pred             ccceeEEEEEEeccC--CcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEEecCC
Confidence            899999999997420  01124568999998765443 456799999999999999999999999988899999999999


Q ss_pred             CChhHHhhhhCCC--CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          117 GSLADRIRIHHTP--QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       117 gsL~~~l~~~~~~--~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      |+|.+++......  ......+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.++++|||++.....
T Consensus        93 ~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~  169 (275)
T cd05046          93 GDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLS---NARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYN  169 (275)
T ss_pred             CcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhh---hcCcccCcCccceEEEeCCCcEEEcccccccccCc
Confidence            9999999533211  112336899999999999999999999   89999999999999999999999999999876543


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ..........++..|++|+....      +     |++  +|+ +...|+... .....+.....+......+..++..+
T Consensus       170 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l  248 (275)
T cd05046         170 SEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGL-SDEEVLNRLQAGKLELPVPEGCPSRL  248 (275)
T ss_pred             ccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCcccc-chHHHHHHHHcCCcCCCCCCCCCHHH
Confidence            33322333455667877775322      2     877  777 444444221 11122222221222222223567789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      .+++.+||+.+|++|| +.++++.|+
T Consensus       249 ~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         249 YKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             HHHHHHHcCCCcccCCCHHHHHHHhc
Confidence            9999999999999999 999999885

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=6.2e-32  Score=235.80  Aligned_cols=247  Identities=17%  Similarity=0.216  Sum_probs=173.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecC-CcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLET-QIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~-~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..  .....+++.||||.++... ......+.+|+.++.++ +|+||+++++++... ...+++|||+
T Consensus        17 ~G~fg~V~~~~~~~--~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~   94 (343)
T cd05103          17 RGAFGQVIEADAFG--IDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFC   94 (343)
T ss_pred             CCccceEEEEeecc--CCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCceEEEEecc
Confidence            89999999997421  0011267899999997643 23446788999999999 689999999988754 4578999999


Q ss_pred             CCCChhHHhhhhCCCC------------------------------------------------------------CCCC
Q 044211          115 NCGSLADRIRIHHTPQ------------------------------------------------------------PQHE  134 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~------------------------------------------------------------~~~~  134 (292)
                      ++|+|.+++.......                                                            ....
T Consensus        95 ~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (343)
T cd05103          95 KFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKK  174 (343)
T ss_pred             CCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhhhhhc
Confidence            9999999985321100                                                            0013


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc-cchhhhhccccccccc
Q 044211          135 PLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET-HISELLSGLRAFDLAR  213 (292)
Q Consensus       135 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~g~~~y~~~~  213 (292)
                      .+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++........ .......++..|++|+
T Consensus       175 ~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  251 (343)
T cd05103         175 VLTLEDLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE  251 (343)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcH
Confidence            4678888999999999999999   89999999999999999999999999999976543221 1112233455677776


Q ss_pred             cc------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HH
Q 044211          214 LN------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       214 ~~------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~  278 (292)
                      ..      .++     |++  +|+ ....|+...............+... ..+...++.+.+++.+||+.||++|| +.
T Consensus       252 ~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~cl~~~p~~Rps~~  330 (343)
T cd05103         252 TIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRM-RAPDYTTPEMYQTMLDCWHGEPSQRPTFS  330 (343)
T ss_pred             HhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhccCCC-CCCCCCCHHHHHHHHHHccCChhhCcCHH
Confidence            43      222     877  776 3443432221111111111111111 11123456799999999999999999 99


Q ss_pred             HHHHHHHHhhhc
Q 044211          279 DVAKKTQANVCS  290 (292)
Q Consensus       279 el~~~L~~l~~~  290 (292)
                      +|++.|+.+.+.
T Consensus       331 eil~~l~~~~~~  342 (343)
T cd05103         331 ELVEHLGNLLQA  342 (343)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.98  E-value=2.5e-32  Score=231.43  Aligned_cols=227  Identities=14%  Similarity=0.186  Sum_probs=170.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.+....   ......+..|+.++++++||||+++++++..+...++||||+
T Consensus         3 ~G~~g~Vy~~~~~~-------~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~   75 (277)
T cd05607           3 KGGFGEVCAVQVKN-------TGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLM   75 (277)
T ss_pred             CCCceEEEEEEEcc-------CCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecC
Confidence            69999999999875       89999999986421   112344567999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.++|+|||++.....
T Consensus        76 ~g~~L~~~~~~~-----~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~  147 (277)
T cd05607          76 NGGDLKYHIYNV-----GERGLEMERVIHYSAQITCGILHLH---SMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKD  147 (277)
T ss_pred             CCCCHHHHHHhc-----cccCCCHHHHHHHHHHHHHHHHHHH---HCCEEEccCChHhEEEcCCCCEEEeeceeeeecCC
Confidence            999999888322     2345888999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhc-c--chhhhcccccccCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEE-D--RLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ...  .....|+..|++|++...      +     |++  ||+ |+. |+... .  .........+....... ....+
T Consensus       148 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  223 (277)
T cd05607         148 GKT--ITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRT-PFKDHKEKVAKEELKRRTLEDEVKFE-HQNFT  223 (277)
T ss_pred             Cce--eeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCC-CCCCCcchhhHHHHHHHhhccccccc-cccCC
Confidence            322  223467888877775432      2     888  888 654 33211 1  11111122222221111 12456


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+.+++.+||+.||++|| +.|+++.
T Consensus       224 ~~~~~li~~~L~~~P~~R~~~~~~~~~  250 (277)
T cd05607         224 EESKDICRLFLAKKPEDRLGSREKNDD  250 (277)
T ss_pred             HHHHHHHHHHhccCHhhCCCCccchhh
Confidence            6899999999999999999 9776543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.98  E-value=1.4e-31  Score=223.95  Aligned_cols=227  Identities=15%  Similarity=0.176  Sum_probs=176.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||++.+..       +++.||+|.++.. .....+.+.+|+.+++.++|+||+++++.+...+.+++++||+++
T Consensus        10 ~g~~g~v~~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   82 (255)
T cd08219          10 EGSFGRALLVQHVN-------SDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDG   82 (255)
T ss_pred             ccCCeEEEEEEEcC-------CCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCC
Confidence            79999999999875       8899999998643 333456788999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++++|||.+.......
T Consensus        83 ~~l~~~~~~~-----~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~  154 (255)
T cd08219          83 GDLMQKIKLQ-----RGKLFPEDTILQWFVQMCLGVQHIH---EKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPG  154 (255)
T ss_pred             CcHHHHHHhc-----cCCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEECCCCcEEEcccCcceeecccc
Confidence            9999988421     2456789999999999999999999   8999999999999999999999999999997664322


Q ss_pred             ccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      . ......|+..|++|++...      +     |++  +|+ |.. |+... ...........+...+.+ ...+..+.+
T Consensus       155 ~-~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~-p~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~  230 (255)
T cd08219         155 A-YACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKH-PFQAN-SWKNLILKVCQGSYKPLP-SHYSYELRS  230 (255)
T ss_pred             c-ccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccC-CCCCC-CHHHHHHHHhcCCCCCCC-cccCHHHHH
Confidence            2 1223457778877776432      2     888  888 544 44332 222222222222222211 356678999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++.+||+.||++|| +.+++..
T Consensus       231 li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         231 LIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             HHHHHHhCCcccCCCHHHHhhc
Confidence            99999999999999 9999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.98  E-value=3.2e-32  Score=232.04  Aligned_cols=225  Identities=14%  Similarity=0.133  Sum_probs=168.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||+|....       +++.||+|.++... ......+.+|+.++++++||||+++++++...+..++|+||+. 
T Consensus        15 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-   86 (288)
T cd07871          15 EGTYATVFKGRSKL-------TENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLD-   86 (288)
T ss_pred             cCCCEEEEEEEECC-------CCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCCC-
Confidence            89999999999875       88999999986542 2234567899999999999999999999998888999999998 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++..      ....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.......
T Consensus        87 ~~l~~~l~~------~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~  157 (288)
T cd07871          87 SDLKQYLDN------CGNLMSMHNVKIFMFQLLRGLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPT  157 (288)
T ss_pred             cCHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCC
Confidence            499998842      2345788999999999999999999   8999999999999999999999999999997654322


Q ss_pred             ccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhcc--------------------
Q 044211          197 THISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIID--------------------  241 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~--------------------  241 (292)
                      . ......++..|++|+.....            |++  +|+ |+. ++.... ..+.+.                    
T Consensus       158 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~-pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (288)
T cd07871         158 K-TYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRP-MFPGST-VKEELHLIFRLLGTPTEETWPGITSN  234 (288)
T ss_pred             c-cccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCC-CCCCCC-HHHHHHHHHHHhCCCChHHhhccccc
Confidence            1 12334578889888864321            888  888 653 221111 100000                    


Q ss_pred             ----cccccCC----CCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 ----PLIMGDR----SCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 ----~~~~~~~----~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                          .......    ........+.++.+|+.+||+.||.+|| +.|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         235 EEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             hhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence                0000000    0000012356788999999999999999 999975

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.98  E-value=6.2e-32  Score=226.74  Aligned_cols=230  Identities=20%  Similarity=0.285  Sum_probs=176.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||+|.+.        +++.||+|.+.... .....+.+|+..+++++|+||+++++++......++++||++++
T Consensus        16 ~g~~~~v~~~~~~--------~~~~~~vK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~   86 (261)
T cd05034          16 AGQFGEVWMGTWN--------GTTKVAVKTLKPGT-MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKG   86 (261)
T ss_pred             cCcceEEEEEEEc--------CCceEEEEEecCCc-cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccCCC
Confidence            8999999999986        67889999987643 34567899999999999999999999999888899999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..     .....+++..+..++.+++.|+.|||   ..+++|+||+|+||++++++.++|+|||++..+..+..
T Consensus        87 ~L~~~i~~-----~~~~~~~~~~~~~~~~~i~~al~~lh---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~  158 (261)
T cd05034          87 SLLDFLKS-----GEGKKLRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEY  158 (261)
T ss_pred             CHHHHHhc-----cccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcchheEEEcCCCCEEECccccceeccchhh
Confidence            99999932     12356899999999999999999999   89999999999999999999999999999987654332


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|.+|+...      ++     |++  +++ +...|+.... ....++...... ..+.+...+..+.++
T Consensus       159 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~  236 (261)
T cd05034         159 TAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMT-NREVLEQVERGY-RMPRPPNCPEELYDL  236 (261)
T ss_pred             hhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHHcCC-CCCCCCCCCHHHHHH
Confidence            2222233445676666443      22     877  777 3454543322 222222222211 111123557789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      +.+||+.+|++|| +.++++.|+.
T Consensus       237 i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         237 MLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             HHHHcccCcccCCCHHHHHHHHhc
Confidence            9999999999999 9999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.98  E-value=8e-32  Score=231.19  Aligned_cols=238  Identities=19%  Similarity=0.218  Sum_probs=173.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCe--EEEEEeecCC-CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQER--PVSVMKFDES-KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~--~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       ++.  .+++|.++.. .......+.+|+.++.++ +|+||+++++++...+.+++|+||
T Consensus        17 ~G~~g~V~~a~~~~-------~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~   89 (303)
T cd05088          17 EGNFGQVLKARIKK-------DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEY   89 (303)
T ss_pred             CCCCceEEEEEEcc-------CCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEEe
Confidence            89999999999853       554  4688877653 233446788999999999 899999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          114 INCGSLADRIRIHHTPQ---------PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                      +++|+|.+++...+...         .....+++..++.++.|++.||.|||   +.+++|+||||+|||++.++.+||+
T Consensus        90 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dlkp~Nili~~~~~~kl~  166 (303)
T cd05088          90 APHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIA  166 (303)
T ss_pred             CCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEecCCCcEEeC
Confidence            99999999995432211         12346899999999999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCCccchhhhhccccccccccc------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCC
Q 044211          185 DFSFSISIPEGETHISELLSGLRAFDLARLN------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       185 Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      |||++.......  ......++..|++|+..      .++     |++  ||+ ....|+... ...+..+....+ ...
T Consensus       167 dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~-~~~~~~~~~~~~-~~~  242 (303)
T cd05088         167 DFGLSRGQEVYV--KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM-TCAELYEKLPQG-YRL  242 (303)
T ss_pred             ccccCcccchhh--hcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccC-ChHHHHHHHhcC-CcC
Confidence            999986432111  11112234456665542      222     888  887 344444322 112222211111 111


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      ..+...++.+.+|+.+||+.+|++|| +.+++..|+.+..
T Consensus       243 ~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~  282 (303)
T cd05088         243 EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE  282 (303)
T ss_pred             CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            11124566899999999999999999 9999999988654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.98  E-value=1.3e-32  Score=238.38  Aligned_cols=219  Identities=15%  Similarity=0.214  Sum_probs=167.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHH---HhcCCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYA---SQMIHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l---~~l~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||+|.+..       +++.||+|.++..   .....+.+.+|..++   +.++||||+++++++...+..++||
T Consensus         9 ~G~~g~Vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~   81 (324)
T cd05589           9 RGHFGKVLLAEYKK-------TGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVM   81 (324)
T ss_pred             ecCCEEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEE
Confidence            79999999999875       8899999998743   222345566676655   5668999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+++|+|...+        ....+++..+..++.|++.||.|||   +.+++||||||+||++++++.+||+|||++..
T Consensus        82 E~~~~~~L~~~~--------~~~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~  150 (324)
T cd05589          82 EYAAGGDLMMHI--------HTDVFSEPRAVFYAACVVLGLQYLH---ENKIVYRDLKLDNLLLDTEGFVKIADFGLCKE  150 (324)
T ss_pred             cCCCCCcHHHHh--------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCcEEeCcccCCcc
Confidence            999999998888        2346899999999999999999999   89999999999999999999999999999875


Q ss_pred             cCCCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          192 IPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ..... .......|+..|++|+....      +     |++  +|+ |+. |+.. .......+.........+  ...+
T Consensus       151 ~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~-pf~~-~~~~~~~~~i~~~~~~~p--~~~~  225 (324)
T cd05589         151 GMGFG-DRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGES-PFPG-DDEEEVFDSIVNDEVRYP--RFLS  225 (324)
T ss_pred             CCCCC-CcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCC-CCCC-CCHHHHHHHHHhCCCCCC--CCCC
Confidence            43222 12234568899988875432      2     888  888 554 3322 222222222222222222  2556


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVD  279 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~e  279 (292)
                      ..+.+++.+||+.||++|| +.+
T Consensus       226 ~~~~~li~~~L~~dP~~R~~~~~  248 (324)
T cd05589         226 REAISIMRRLLRRNPERRLGSGE  248 (324)
T ss_pred             HHHHHHHHHHhhcCHhHcCCCCC
Confidence            7899999999999999999 543

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.98  E-value=4.2e-32  Score=232.15  Aligned_cols=226  Identities=17%  Similarity=0.276  Sum_probs=176.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||+|....       +++.|++|.+........+.+.+|+..++.++|+||+++++++...+..++|+||+.++
T Consensus        29 ~g~~g~vy~~~~~~-------~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  101 (296)
T cd06655          29 QGASGTVFTAIDVA-------TGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGG  101 (296)
T ss_pred             cCCCeEEEEEEEcC-------CCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecCCC
Confidence            89999999998765       88999999987665555677899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|..++.        ...+++..+..++.+++.||.|||   +.+++|+||+|+||+++.++.++|+|||++........
T Consensus       102 ~L~~~~~--------~~~l~~~~~~~i~~~l~~al~~LH---~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~  170 (296)
T cd06655         102 SLTDVVT--------ETCMDEAQIAAVCRECLQALEFLH---ANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQS  170 (296)
T ss_pred             cHHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccchhcccccc
Confidence            9999982        345889999999999999999999   89999999999999999999999999999886644322


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      . .....++..|++|+...      ++     |++  +|+ |+. |+.................+....+...++.+.++
T Consensus       171 ~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  248 (296)
T cd06655         171 K-RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEP-PYLNENPLRALYLIATNGTPELQNPEKLSPIFRDF  248 (296)
T ss_pred             c-CCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHH
Confidence            1 22345777888877543      22     888  888 543 43332222111111111111112223567789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+||..||.+|| +.+++..
T Consensus       249 i~~~l~~dp~~Rpt~~~il~~  269 (296)
T cd06655         249 LNRCLEMDVEKRGSAKELLQH  269 (296)
T ss_pred             HHHHhhcChhhCCCHHHHhhC
Confidence            9999999999999 9998754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.98  E-value=1.3e-31  Score=227.74  Aligned_cols=237  Identities=18%  Similarity=0.217  Sum_probs=173.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv~e~~  114 (292)
                      +|+||.||.+.+..   .+..++..||+|.++... ......+.+|+.+++.++||||+++++++...  ...++|+||+
T Consensus        14 ~g~~g~v~~~~~~~---~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~   90 (284)
T cd05079          14 EGHFGKVELCRYDP---EGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFL   90 (284)
T ss_pred             CCCceeEEEEEEcc---CCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEEEcc
Confidence            89999999997521   111267889999987543 33456789999999999999999999998775  5678999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.+++.+      ....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.++|+|||++..+..
T Consensus        91 ~g~~L~~~l~~------~~~~~~~~~~~~i~~~i~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05079          91 PSGSLKEYLPR------NKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIET  161 (284)
T ss_pred             CCCCHHHHHHh------ccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccchheEEEcCCCCEEECCCcccccccc
Confidence            99999999831      2346899999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCcc--chhhhhccccccccccc------CCC-----CeE--EEc-cchhhhhhcc-------------chhhhcccccc
Q 044211          195 GETH--ISELLSGLRAFDLARLN------EDD-----GYV--VLL-DHIKKYFEED-------------RLNEIIDPLIM  245 (292)
Q Consensus       195 ~~~~--~~~~~~g~~~y~~~~~~------~~~-----Gvi--el~-~~~~~~~~~~-------------~~~~~~~~~~~  245 (292)
                      ....  ......++..|.+|++.      .++     |++  +|+ +..+......             ....... .+.
T Consensus       162 ~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  240 (284)
T cd05079         162 DKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVR-VLE  240 (284)
T ss_pred             CccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHH-HHH
Confidence            3221  11233455567666643      222     888  887 4321111000             0000000 011


Q ss_pred             cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          246 GDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       246 ~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      .....+.+..++..+.+|+.+||+.||++|| +.++++.|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         241 EGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             cCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            1111111235677899999999999999999 99999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=2.1e-32  Score=239.36  Aligned_cols=226  Identities=15%  Similarity=0.150  Sum_probs=174.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.++..   .......+.+|+.++..++|+||+++++++...+..++||||+
T Consensus        11 ~G~~g~Vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   83 (350)
T cd05573          11 RGAFGEVWLVRDKD-------TGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYM   83 (350)
T ss_pred             eCCcEEEEEEEECC-------CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCC
Confidence            89999999999875       7999999998753   2234567889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++.....
T Consensus        84 ~~~~L~~~l~-------~~~~l~~~~~~~i~~qi~~aL~~LH---~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~  153 (350)
T cd05573          84 PGGDLMNLLI-------RKDVFPEETARFYIAELVLALDSVH---KLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNK  153 (350)
T ss_pred             CCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEeecCCCCccCcc
Confidence            9999999993       2357899999999999999999999   89999999999999999999999999999986654


Q ss_pred             CC----------------------------ccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhh
Q 044211          195 GE----------------------------THISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFE  232 (292)
Q Consensus       195 ~~----------------------------~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~  232 (292)
                      ..                            ........||+.|++||+...      +     |++  ||+ |+. |+..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~-Pf~~  232 (350)
T cd05573         154 AKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFP-PFYS  232 (350)
T ss_pred             cCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCC-CCCC
Confidence            32                            112234568899988875432      2     988  888 544 4333


Q ss_pred             ccchhhhcccccc--cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC--HHHHHHH
Q 044211          233 EDRLNEIIDPLIM--GDRSCSGNQQQLQAFAHLIFECVNESPVDRP--MVDVAKK  283 (292)
Q Consensus       233 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP--~~el~~~  283 (292)
                      ... .........  .....+.....++.+.+++.+||. ||.+||  +.++++.
T Consensus       233 ~~~-~~~~~~i~~~~~~~~~p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         233 DTL-QETYNKIINWKESLRFPPDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             CCH-HHHHHHHhccCCcccCCCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence            221 111111111  111111112356789999999998 999999  6777653

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.98  E-value=8e-32  Score=228.90  Aligned_cols=237  Identities=22%  Similarity=0.248  Sum_probs=169.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv~e~~  114 (292)
                      +|+||+||.+.+..   ....+++.||+|.++... ......+.+|+..+++++||||+++++++...  ...+++|||+
T Consensus        14 ~g~~g~v~~~~~~~---~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~   90 (283)
T cd05080          14 EGHFGKVSLYCYDP---ANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYV   90 (283)
T ss_pred             cCCCcEEEEeeEcc---ccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEecCC
Confidence            89999998875421   011167889999987643 23456788999999999999999999988653  3578999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.+++.        ...+++..+..++.|++.||.|||   +.+++|+||||+||++++++.++|+|||++.....
T Consensus        91 ~~~~l~~~~~--------~~~l~~~~~~~i~~~l~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  159 (283)
T cd05080          91 PLGSLRDYLP--------KHKLNLAQLLLFAQQICEGMAYLH---SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE  159 (283)
T ss_pred             CCCCHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccChheEEEcCCCcEEEeecccccccCC
Confidence            9999999993        235899999999999999999999   89999999999999999999999999999986643


Q ss_pred             CCccc--hhhhhccccccccccc------CCC-----CeE--EEc-cchhhhhhccchhhhcccc------------ccc
Q 044211          195 GETHI--SELLSGLRAFDLARLN------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPL------------IMG  246 (292)
Q Consensus       195 ~~~~~--~~~~~g~~~y~~~~~~------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~------------~~~  246 (292)
                      .....  .....++..|++|+..      .++     |++  +|+ |..+.........+.....            ...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (283)
T cd05080         160 GHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLER  239 (283)
T ss_pred             cchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhc
Confidence            22111  1112234456555543      223     888  888 5432111010111111000            000


Q ss_pred             CCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          247 DRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       247 ~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      ....+.+..++..+.+++.+||+.+|++|| +.++++.|+++.
T Consensus       240 ~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         240 GMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            011111235677999999999999999999 999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.98  E-value=4.4e-32  Score=231.86  Aligned_cols=244  Identities=16%  Similarity=0.148  Sum_probs=175.9

Q ss_pred             ccCCCeeEeeecCCCC---------ccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcc
Q 044211           38 IKNGYKLYEGFFQNRP---------ISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~---------~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~  107 (292)
                      +|+||.||+|......         ......+..||+|.+.... ......+.+|+.++++++||||+++++++...+..
T Consensus        15 ~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   94 (296)
T cd05051          15 EGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDPPL   94 (296)
T ss_pred             CCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEEEEecCCCc
Confidence            8999999999874200         0011134679999987643 33456789999999999999999999999998999


Q ss_pred             eEEEeccCCCChhHHhhhhCCC----CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEE
Q 044211          108 ILVFEYINCGSLADRIRIHHTP----QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKL  183 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~----~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl  183 (292)
                      ++++||+.+++|.+++......    ......+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.++|
T Consensus        95 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH---~~~i~H~dlkp~Nili~~~~~~~l  171 (296)
T cd05051          95 CMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE---SLNFVHRDLATRNCLVGKNYTIKI  171 (296)
T ss_pred             EEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHH---HcCccccccchhceeecCCCceEE
Confidence            9999999999999999543211    112347899999999999999999999   899999999999999999999999


Q ss_pred             eecccccccCCCCcc-chhhhhcccccccccccCC------C-----CeE--EEc-c-chhhhhhccchhhhcccccc--
Q 044211          184 FDFSFSISIPEGETH-ISELLSGLRAFDLARLNED------D-----GYV--VLL-D-HIKKYFEEDRLNEIIDPLIM--  245 (292)
Q Consensus       184 ~Dfg~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~-~~~~~~~~~~~~~~~~~~~~--  245 (292)
                      +|||++......... ......++..|++|++...      +     |++  ||+ + +..|+ ........+.....  
T Consensus       172 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~-~~~~~~~~~~~~~~~~  250 (296)
T cd05051         172 ADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPY-EHLTDQQVIENAGHFF  250 (296)
T ss_pred             ccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCC-CCcChHHHHHHHHhcc
Confidence            999999765433221 1233445667877765432      2     877  776 3 33332 22111211111110  


Q ss_pred             ----cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          246 ----GDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       246 ----~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                          .....+.+..++..+.+++.+||+.||++|| +.+|++.|+
T Consensus       251 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         251 RDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             ccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence                0111111234567899999999999999999 999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.98  E-value=5.8e-32  Score=226.12  Aligned_cols=227  Identities=18%  Similarity=0.253  Sum_probs=177.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +++.|++|.+...  .......+.+|+.++++++||||+++++++...+..++|+||++
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd08529          10 KGSFGVVFKVVRKA-------DKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAE   82 (256)
T ss_pred             CCCCeEEEEEEEcC-------CCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCC
Confidence            79999999999875       8899999998643  33445678999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++...     ....+++..++.++.+++.||.|||   +.+++|+||+|+||+++.++.++|+|||++..+...
T Consensus        83 ~~~L~~~l~~~-----~~~~~~~~~~~~i~~~l~~al~~lH---~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~  154 (256)
T cd08529          83 NGDLHKLLKMQ-----RGRPLPEDQVWRFFIQILLGLAHLH---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDN  154 (256)
T ss_pred             CCcHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEeCCCCEEEcccccceeccCc
Confidence            99999999422     2457889999999999999999999   899999999999999999999999999998876543


Q ss_pred             CccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      ... .....|+..|.+|++...      +     |++  +|+ |+. |+... ...........+..+... ...+..+.
T Consensus       155 ~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~  230 (256)
T cd08529         155 TNF-ANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKH-PFDAN-NQGALILKIIRGVFPPVS-QMYSQQLA  230 (256)
T ss_pred             cch-hhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCC-CCCCC-CHHHHHHHHHcCCCCCCc-cccCHHHH
Confidence            322 233457778877776432      2     888  888 544 33222 222222222333332222 25667899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +++.+||+.+|++|| +.++++.
T Consensus       231 ~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         231 QLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             HHHHHHccCCcccCcCHHHHhhC
Confidence            999999999999999 9998863

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.98  E-value=8.9e-32  Score=228.16  Aligned_cols=239  Identities=18%  Similarity=0.233  Sum_probs=176.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..   .+......||+|.+..... .....+.+|+..+++++|+||+++++++.. ...++|+||+.+
T Consensus        17 ~g~~g~v~~~~~~~---~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~   92 (279)
T cd05057          17 SGAFGTVYKGVWIP---EGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQLITQLMPL   92 (279)
T ss_pred             CCCCccEEEEEEec---CCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEEEEecCCC
Confidence            89999999998753   0001123699998876533 344678999999999999999999999987 788999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++.      .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.......
T Consensus        93 g~L~~~l~------~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~  163 (279)
T cd05057          93 GCLLDYVR------NHKDNIGSQYLLNWCVQIAKGMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDE  163 (279)
T ss_pred             CcHHHHHH------hccCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecccCcceEEEcCCCeEEECCCcccccccCcc
Confidence            99999993      22445899999999999999999999   8999999999999999999999999999998765332


Q ss_pred             ccch-hhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          197 THIS-ELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       197 ~~~~-~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      .... ....++..|++|+...      ++     |++  |++. ...|+ ......+..+....+.. .+.+..++..+.
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  241 (279)
T cd05057         164 KEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPY-EGIPAVEIPDLLEKGER-LPQPPICTIDVY  241 (279)
T ss_pred             cceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHHhCCCC-CCCCCCCCHHHH
Confidence            2111 1112245676666432      22     877  7763 33333 22222222222222221 122235667899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          262 HLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      +++.+||..||+.|| +.++++.|+++.++.
T Consensus       242 ~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~~  272 (279)
T cd05057         242 MVLVKCWMIDAESRPTFKELINEFSKMARDP  272 (279)
T ss_pred             HHHHHHcCCChhhCCCHHHHHHHHHHHHhCC
Confidence            999999999999999 999999999986543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=5.3e-32  Score=227.32  Aligned_cols=227  Identities=17%  Similarity=0.211  Sum_probs=173.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-----chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-----RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      .|++|.||.+....       ++++||+|.+.....     .....+.+|+.++++++||||+++++++......++++|
T Consensus        12 ~g~~~~vy~~~~~~-------~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   84 (263)
T cd06625          12 QGAFGRVYLCYDVD-------TGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSIFME   84 (263)
T ss_pred             CCCceEEEEEEEcC-------CCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEEEEE
Confidence            89999999998764       789999999864321     123568889999999999999999999999999999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+++++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++...
T Consensus        85 ~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~  154 (263)
T cd06625          85 YMPGGSVKDQLK-------AYGALTETVTRKYTRQILEGVEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRL  154 (263)
T ss_pred             ECCCCcHHHHHH-------HhCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceec
Confidence            999999999994       2346888999999999999999999   899999999999999999999999999999766


Q ss_pred             CCCCccch--hhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHH
Q 044211          193 PEGETHIS--ELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQ  256 (292)
Q Consensus       193 ~~~~~~~~--~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (292)
                      ........  ....++..|.+|+...      ++     |++  +|+ |+. |+............ .........+...
T Consensus       155 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~-p~~~~~~~~~~~~~-~~~~~~~~~~~~~  232 (263)
T cd06625         155 QTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKP-PWAEFEAMAAIFKI-ATQPTNPQLPSHV  232 (263)
T ss_pred             cccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCC-CccccchHHHHHHH-hccCCCCCCCccC
Confidence            43222111  2345677887777543      22     888  888 554 43332222221111 1111111112356


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +..+.+++.+||+.+|++|| +.+++..
T Consensus       233 ~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         233 SPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             CHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence            77899999999999999999 9999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=7.3e-33  Score=228.99  Aligned_cols=227  Identities=17%  Similarity=0.156  Sum_probs=174.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC--CCcchHHHHHHHHHHHHhcCCCCccceeeeeec-----CCcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE--SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE-----TQIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-----~~~~~lv  110 (292)
                      +|+||.|+.+....       +++.||||++..  ......++.++|+.+|+.++|+||+.+.+++..     -+..|+|
T Consensus        32 ~GAyGvVcsA~~~~-------t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV  104 (359)
T KOG0660|consen   32 RGAYGVVCSAKDKR-------TGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLV  104 (359)
T ss_pred             CcceeeEEEEEEcC-------CCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEe
Confidence            89999999999987       999999999974  345567889999999999999999999999876     2347999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +|+++ .+|.+.+       .++..++...+..++.|+++||.|+|   +.+++||||||+|+|++.+..+||+|||+|+
T Consensus       105 ~elMe-tDL~~ii-------k~~~~L~d~H~q~f~YQiLrgLKyiH---SAnViHRDLKPsNll~n~~c~lKI~DFGLAR  173 (359)
T KOG0660|consen  105 FELME-TDLHQII-------KSQQDLTDDHAQYFLYQILRGLKYIH---SANVIHRDLKPSNLLLNADCDLKICDFGLAR  173 (359)
T ss_pred             hhHHh-hHHHHHH-------HcCccccHHHHHHHHHHHHHhcchhh---cccccccccchhheeeccCCCEEecccccee
Confidence            99997 5999999       35566999999999999999999999   9999999999999999999999999999999


Q ss_pred             ccCCCCccc-hhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchh-----------------
Q 044211          191 SIPEGETHI-SELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLN-----------------  237 (292)
Q Consensus       191 ~~~~~~~~~-~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~-----------------  237 (292)
                      ......... -+..+.|.+|.+|++.-..            |||  ||+ |++ -|.....+.                 
T Consensus       174 ~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkp-lFpG~d~v~Ql~lI~~~lGtP~~e~l  252 (359)
T KOG0660|consen  174 YLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKP-LFPGKDYVHQLQLILELLGTPSEEDL  252 (359)
T ss_pred             eccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCC-CCCCCchHHHHHHHHHhcCCCCHHHH
Confidence            886431111 1345678899777665433            999  999 665 111111100                 


Q ss_pred             -hhc----ccccccCCCCCC------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          238 -EII----DPLIMGDRSCSG------NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       238 -~~~----~~~~~~~~~~~~------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                       .+-    ...+...+..+.      .+..++...+|+.++|..||.+|+ +.|.++.
T Consensus       253 ~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~h  310 (359)
T KOG0660|consen  253 QKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAH  310 (359)
T ss_pred             HHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence             000    001111111111      135677899999999999999999 9998764

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.98  E-value=7.6e-32  Score=227.35  Aligned_cols=237  Identities=16%  Similarity=0.131  Sum_probs=169.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..     ..++..+|+|.+..... .....+.+|+.++++++||||+++++++......++||||+++
T Consensus         5 ~G~~g~Vy~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   79 (269)
T cd05087           5 NGWFGKVILGEVNS-----GYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPL   79 (269)
T ss_pred             ccCCceEEEEEEcC-----CCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCC
Confidence            79999999998631     11456799999876532 2335788999999999999999999999988889999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++.....  .....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++.......
T Consensus        80 g~L~~~l~~~~~--~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~  154 (269)
T cd05087          80 GDLKGYLRSCRK--AELMTPDPTTLQRMACEIALGLLHLH---KNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKED  154 (269)
T ss_pred             CcHHHHHHHhhh--cccccccHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEECCccccccccCcc
Confidence            999999954321  12345677788899999999999999   8999999999999999999999999999987554332


Q ss_pred             cc-chhhhhcccccccccccC-------------CC-----CeE--EEc-cchhhhhhccchhhh---cccccccCCCCC
Q 044211          197 TH-ISELLSGLRAFDLARLNE-------------DD-----GYV--VLL-DHIKKYFEEDRLNEI---IDPLIMGDRSCS  251 (292)
Q Consensus       197 ~~-~~~~~~g~~~y~~~~~~~-------------~~-----Gvi--el~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~  251 (292)
                      .. ......++..|++|++..             ++     |++  ||+ ....|+.........   +.........+.
T Consensus       155 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  234 (269)
T cd05087         155 YYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPR  234 (269)
T ss_pred             eeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCc
Confidence            21 122345677788887542             23     887  776 233333221111110   000000001111


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      .....+..+.+++.+|| .+|++|| +.+|...|+
T Consensus       235 ~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         235 LKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             cCCCCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            11134567889999999 5899999 999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.98  E-value=1.2e-31  Score=231.25  Aligned_cols=247  Identities=19%  Similarity=0.229  Sum_probs=178.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||++......+........||+|.++... ......+.+|+.+++++ +||||+++++++...+..++++||++
T Consensus        22 ~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~  101 (314)
T cd05099          22 EGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLYVIVEYAA  101 (314)
T ss_pred             CCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCceEEEEecCC
Confidence            89999999997532111112245679999987542 33456788999999999 69999999999998888999999999


Q ss_pred             CCChhHHhhhhCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          116 CGSLADRIRIHHTP---------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       116 ~gsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      +|+|.+++......         ......+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+||
T Consensus       102 ~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~~~~~~kL~Df  178 (314)
T cd05099         102 KGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDNVMKIADF  178 (314)
T ss_pred             CCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeeccccceeEEEcCCCcEEEccc
Confidence            99999999543210         112356889999999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCccc-hhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          187 SFSISIPEGETHI-SELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       187 g~a~~~~~~~~~~-~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      |+++......... .....++..|++|+...      ++     |++  +|+ +...|+. .............+.. ..
T Consensus       179 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~-~~~~~~~~~~~~~~~~-~~  256 (314)
T cd05099         179 GLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYP-GIPVEELFKLLREGHR-MD  256 (314)
T ss_pred             cccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHcCCC-CC
Confidence            9998664322111 11122345677777532      22     877  776 3333332 2222222222111211 11


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+..++..+.+++.+||+.||++|| +.++++.|+++..
T Consensus       257 ~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~  295 (314)
T cd05099         257 KPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLA  295 (314)
T ss_pred             CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence            1235677899999999999999999 9999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.98  E-value=7.2e-32  Score=227.16  Aligned_cols=227  Identities=17%  Similarity=0.210  Sum_probs=174.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|....       +++.||+|.++.........+.+|+.+++.++||||+++++++...+..++++||++++
T Consensus        19 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~   91 (267)
T cd06645          19 SGTYGDVYKARNVN-------TGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGG   91 (267)
T ss_pred             CCCCeEEEEEEEcC-------CCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCCC
Confidence            89999999999865       78999999987664445567889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++...... .
T Consensus        92 ~L~~~~~-------~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~-~  160 (267)
T cd06645          92 SLQDIYH-------VTGPLSESQIAYVSRETLQGLYYLH---SKGKMHRDIKGANILLTDNGHVKLADFGVSAQITAT-I  160 (267)
T ss_pred             cHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECcceeeeEccCc-c
Confidence            9999983       3456899999999999999999999   899999999999999999999999999998766432 1


Q ss_pred             cchhhhhcccccccccccC---------CC-----CeE--EEccchhhhhhccchhhhcccccccC--CCCCCchHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE---------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGD--RSCSGNQQQLQA  259 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  259 (292)
                      .......|+..|++|+...         ++     |++  +|+....|+.................  .........+..
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (267)
T cd06645         161 AKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNS  240 (267)
T ss_pred             cccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHH
Confidence            2223456788898888642         12     888  77733334433222111111000000  000011134557


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+++.+||+.+|++|| +.+|++
T Consensus       241 ~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         241 FHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             HHHHHHHHccCCchhCcCHHHHhc
Confidence            89999999999999999 999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.98  E-value=4.1e-32  Score=235.97  Aligned_cols=224  Identities=16%  Similarity=0.162  Sum_probs=169.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC----CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES----KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||++....    +..+++.||+|.+...    .....+.+..|+.+++.+ .|+||+++++++...+..++|||
T Consensus        10 ~G~~g~Vy~~~~~~----~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (332)
T cd05614          10 TGAYGKVFLVRKVT----GHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLILD   85 (332)
T ss_pred             ecCCEEEEEEEEcc----cCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEEEEe
Confidence            79999999987631    1126789999998642    222345678899999999 58999999999999999999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+.+|+|.+++.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++...
T Consensus        86 ~~~~g~L~~~l~-------~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~  155 (332)
T cd05614          86 YVSGGEMFTHLY-------QRDNFSEDEVRFYSGEIILALEHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLSKEF  155 (332)
T ss_pred             CCCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHeEECCCCCEEEeeCcCCccc
Confidence            999999999983       3456899999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhcc--c-hhhhcccccccCCCCCCch
Q 044211          193 PEGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEED--R-LNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~  254 (292)
                      ............||..|++||...       ++     |++  ||+ |.. |+....  . ............++.+  .
T Consensus       156 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~-pf~~~~~~~~~~~~~~~~~~~~~~~~--~  232 (332)
T cd05614         156 LSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGAS-PFTLEGERNTQSEVSRRILKCDPPFP--S  232 (332)
T ss_pred             cccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCC-CCCCCCCCCCHHHHHHHHhcCCCCCC--C
Confidence            544333334467899998887532       22     888  888 544 332111  1 1111111222222222  2


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~  278 (292)
                      ..++.+.+++.+||+.||++|| +.
T Consensus       233 ~~~~~~~~li~~~l~~dp~~R~~~~  257 (332)
T cd05614         233 FIGPEAQDLLHKLLRKDPKKRLGAG  257 (332)
T ss_pred             CCCHHHHHHHHHHcCCCHHHcCCCC
Confidence            4567899999999999999999 54

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.98  E-value=6.5e-32  Score=230.86  Aligned_cols=244  Identities=16%  Similarity=0.126  Sum_probs=172.1

Q ss_pred             ccCCCeeEeeecCCCC-------ccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRP-------ISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~-------~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l  109 (292)
                      +|+||.||++......       .........||+|.++... ......+.+|++++++++|+||+++++++...+..++
T Consensus        15 ~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~l   94 (295)
T cd05097          15 EGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLCM   94 (295)
T ss_pred             CCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCccEE
Confidence            8999999998864200       0000123358999987642 2334578999999999999999999999999999999


Q ss_pred             EEeccCCCChhHHhhhhCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          110 VFEYINCGSLADRIRIHHTP-----QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~-----~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                      ||||+.+++|.+++......     ......+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+
T Consensus        95 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nill~~~~~~kl~  171 (295)
T cd05097          95 ITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLA---SLNFVHRDLATRNCLVGNHYTIKIA  171 (295)
T ss_pred             EEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHH---hcCeeccccChhhEEEcCCCcEEec
Confidence            99999999999999532210     112235788899999999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCCcc-chhhhhccccccccccc------CCC-----CeE--EEc-cch-hhhhhccchhhhccc------
Q 044211          185 DFSFSISIPEGETH-ISELLSGLRAFDLARLN------EDD-----GYV--VLL-DHI-KKYFEEDRLNEIIDP------  242 (292)
Q Consensus       185 Dfg~a~~~~~~~~~-~~~~~~g~~~y~~~~~~------~~~-----Gvi--el~-~~~-~~~~~~~~~~~~~~~------  242 (292)
                      |||++......... ......++..|++|++.      .++     |++  +|+ +.. .|+.. ....+.+..      
T Consensus       172 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~-~~~~~~~~~~~~~~~  250 (295)
T cd05097         172 DFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSL-LSDEQVIENTGEFFR  250 (295)
T ss_pred             ccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcc-cChHHHHHHHHHhhh
Confidence            99999765433221 11223345677777653      233     888  776 333 33322 111111110      


Q ss_pred             -ccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          243 -LIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       243 -~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                       ...... ...+...++.+.+|+.+||+.||++|| +.+|++.|++
T Consensus       251 ~~~~~~~-~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~~  295 (295)
T cd05097         251 NQGRQIY-LSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE  295 (295)
T ss_pred             hcccccc-CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhC
Confidence             000000 011124567899999999999999999 9999999863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.98  E-value=5.3e-32  Score=228.13  Aligned_cols=243  Identities=20%  Similarity=0.222  Sum_probs=175.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||+|.+..... ....++.||+|.+.... ......+.+|+.+++.++||||+++++++......++++||+++
T Consensus         5 ~g~~g~vy~~~~~~~~~-~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~   83 (269)
T cd05044           5 SGAFGEVYEGTATDILG-PGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEG   83 (269)
T ss_pred             cccceeEEeeeeccccc-CcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEeccCC
Confidence            69999999998742000 00123689999986542 23456789999999999999999999999988899999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC-----ceEEeecccccc
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-----VAKLFDFSFSIS  191 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~-----~~kl~Dfg~a~~  191 (292)
                      ++|.+++............+++..++.++.|++.||.|||   +.+++|+||+|+||+++.++     .++|+|||++..
T Consensus        84 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~  160 (269)
T cd05044          84 GDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARD  160 (269)
T ss_pred             CcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHH---hCCcccCCCChheEEEecCCCCCCcceEECCcccccc
Confidence            9999999654322223456889999999999999999999   89999999999999999877     899999999976


Q ss_pred             cCCCCccc-hhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHH
Q 044211          192 IPEGETHI-SELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQ  256 (292)
Q Consensus       192 ~~~~~~~~-~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (292)
                      ........ .....++..|++|++...      +     |++  +|+ ....|+..... .+.......+. ....+...
T Consensus       161 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~-~~~~~~~~~~~-~~~~~~~~  238 (269)
T cd05044         161 IYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN-QEVLQHVTAGG-RLQKPENC  238 (269)
T ss_pred             cccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH-HHHHHHHhcCC-ccCCcccc
Confidence            64332211 122234566766665432      2     877  777 34434332221 11111111111 11112356


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      +..+.+++.+||+.+|.+|| +.++++.|++
T Consensus       239 ~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         239 PDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             hHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            78899999999999999999 9999999863

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.98  E-value=2.5e-32  Score=235.61  Aligned_cols=222  Identities=16%  Similarity=0.247  Sum_probs=168.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       +++.||+|.++...   ......+..|..++..+ +||||+++++++...+..++||||
T Consensus         5 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey   77 (316)
T cd05619           5 KGSFGKVFLAELKG-------TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEY   77 (316)
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeC
Confidence            79999999999875       78899999987531   22345567788888764 899999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++....
T Consensus        78 ~~~g~L~~~l~-------~~~~~~~~~~~~~~~qi~~al~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~  147 (316)
T cd05619          78 LNGGDLMFHIQ-------SCHKFDLPRATFYAAEIICGLQFLH---SKGIVYRDLKLDNILLDTDGHIKIADFGMCKENM  147 (316)
T ss_pred             CCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEccCCcceECC
Confidence            99999999993       3456889999999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......|+..|++|+....      +     |++  ||+ |.. |+... ...+.........+..+  ...+..
T Consensus       148 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~-pf~~~-~~~~~~~~i~~~~~~~~--~~~~~~  222 (316)
T cd05619         148 LGDA-KTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQS-PFHGH-DEEELFQSIRMDNPCYP--RWLTRE  222 (316)
T ss_pred             CCCC-ceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCC-CCCCC-CHHHHHHHHHhCCCCCC--ccCCHH
Confidence            2211 1234568889988876432      2     888  888 554 43322 22222222222222211  245567


Q ss_pred             HHHHHhHhcCCCCCCCC-HH-HHH
Q 044211          260 FAHLIFECVNESPVDRP-MV-DVA  281 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~-el~  281 (292)
                      +.+++.+||+.||++|| +. ++.
T Consensus       223 ~~~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         223 AKDILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             HHHHHHHHhccCHhhcCCChHHHH
Confidence            89999999999999999 76 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.98  E-value=2.3e-32  Score=235.93  Aligned_cols=222  Identities=14%  Similarity=0.242  Sum_probs=169.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       +++.||+|.++...   ......+..|..++..+ +||||+++++++...+..++||||
T Consensus         5 ~G~~g~V~~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~   77 (316)
T cd05620           5 KGSFGKVLLAELKG-------KGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEF   77 (316)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECC
Confidence            79999999999875       88999999987531   22345567788888765 899999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +.+|+|..++.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.++|+|||++....
T Consensus        78 ~~~g~L~~~i~-------~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~  147 (316)
T cd05620          78 LNGGDLMFHIQ-------DKGRFDLYRATFYAAEIVCGLQFLH---SKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENV  147 (316)
T ss_pred             CCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEeCccCCCeecc
Confidence            99999999983       3456889999999999999999999   8999999999999999999999999999987532


Q ss_pred             CCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ... .......|+..|++||+...      +     |++  ||+ |.. |+... .............+..+  ...+..
T Consensus       148 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~-Pf~~~-~~~~~~~~~~~~~~~~~--~~~~~~  222 (316)
T cd05620         148 FGD-NRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQS-PFHGD-DEDELFESIRVDTPHYP--RWITKE  222 (316)
T ss_pred             cCC-CceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCC-CCCCC-CHHHHHHHHHhCCCCCC--CCCCHH
Confidence            211 12234568899988876432      2     888  888 544 33322 22222222222222222  245668


Q ss_pred             HHHHHhHhcCCCCCCCC-HH-HHH
Q 044211          260 FAHLIFECVNESPVDRP-MV-DVA  281 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~-el~  281 (292)
                      +.+++.+||+.||++|| +. ++.
T Consensus       223 ~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         223 SKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             HHHHHHHHccCCHHHcCCChHHHH
Confidence            99999999999999999 74 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.98  E-value=1.2e-31  Score=227.46  Aligned_cols=245  Identities=16%  Similarity=0.206  Sum_probs=180.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeec-CCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE-TQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+...   ....+..|++|.+... .......+.+|+.++++++|+||+++++++.. +...++++||+.
T Consensus        16 ~g~~g~V~~~~~~~~---~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~~~~   92 (280)
T cd05043          16 EGTFGRIFYGILIDE---KPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYPYMN   92 (280)
T ss_pred             ccCCceEEEEEEecC---CCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEEcCC
Confidence            899999999998510   0002688999998754 33445678899999999999999999998776 467889999999


Q ss_pred             CCChhHHhhhhCCC-CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          116 CGSLADRIRIHHTP-QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       116 ~gsL~~~l~~~~~~-~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +|+|.+++...... ...+..+++..++.++.|++.||.|||   +.+++|+||+|+||++++++.+||+|||+++.+..
T Consensus        93 ~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~  169 (280)
T cd05043          93 WGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH---KRGVIHKDIAARNCVIDEELQVKITDNALSRDLFP  169 (280)
T ss_pred             CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCHhhEEEcCCCcEEECCCCCcccccC
Confidence            99999999543211 112367899999999999999999999   89999999999999999999999999999986644


Q ss_pred             CCccc-hhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          195 GETHI-SELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       195 ~~~~~-~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ..... .....++..|++++....      +     |++  |++. ...|+... ...+.... +........+..+++.
T Consensus       170 ~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~  247 (280)
T cd05043         170 MDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEI-DPFEMAAY-LKDGYRLAQPINCPDE  247 (280)
T ss_pred             CceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcC-CHHHHHHH-HHcCCCCCCCCcCCHH
Confidence            33221 122334566777765432      2     888  7773 44444332 21222211 1112222222356778


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +.+++.+||+.||++|| +.++++.|+.+.+.
T Consensus       248 ~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~~  279 (280)
T cd05043         248 LFAVMACCWALDPEERPSFSQLVQCLTDFHAQ  279 (280)
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHHHHHHHHhc
Confidence            99999999999999999 99999999998764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=4.9e-32  Score=235.28  Aligned_cols=221  Identities=14%  Similarity=0.145  Sum_probs=166.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhc---CCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQM---IHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l---~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||+|....       +++.||+|.+....   ......+..|..++...   .||||+++++++...+..++||
T Consensus         3 ~G~~g~Vy~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~   75 (330)
T cd05586           3 KGTFGQVYQVRKKD-------TRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVT   75 (330)
T ss_pred             CCCceEEEEEEECC-------CCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEE
Confidence            69999999999875       88999999986421   12233455666666655   6999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+.+|+|.+++.       ....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.++|+|||++..
T Consensus        76 e~~~~g~L~~~l~-------~~~~~~~~~~~~~~~qil~al~~LH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~  145 (330)
T cd05586          76 DYMSGGELFWHLQ-------KEGRFSEDRAKFYIAELVLALEHLH---KYDIVYRDLKPENILLDATGHIALCDFGLSKA  145 (330)
T ss_pred             cCCCCChHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEecCCcCcC
Confidence            9999999999883       3456899999999999999999999   89999999999999999999999999999875


Q ss_pred             cCCCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHH
Q 044211          192 IPEGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQ  256 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (292)
                      ...... ......||..|++||...       ++     |++  +|+ |+. |+... .....+.....+....+. ...
T Consensus       146 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~-Pf~~~-~~~~~~~~i~~~~~~~~~-~~~  221 (330)
T cd05586         146 NLTDNK-TTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWS-PFYAE-DTQQMYRNIAFGKVRFPK-NVL  221 (330)
T ss_pred             CCCCCC-CccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCC-CCCCC-CHHHHHHHHHcCCCCCCC-ccC
Confidence            432221 223456899998887532       22     988  888 644 43322 222222222222222221 234


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVD  279 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~e  279 (292)
                      +..+.+++.+||+.||.+|| +.+
T Consensus       222 ~~~~~~li~~~L~~~P~~R~~~~~  245 (330)
T cd05586         222 SDEGRQFVKGLLNRNPQHRLGAHR  245 (330)
T ss_pred             CHHHHHHHHHHcCCCHHHCCCCCC
Confidence            66889999999999999998 543

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.98  E-value=2.6e-32  Score=236.53  Aligned_cols=223  Identities=17%  Similarity=0.202  Sum_probs=167.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHH-HHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIV-YASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~-~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       +++.||+|.+....   ......+..|.. +++.++|+||+++++++...+..++||||
T Consensus         5 ~G~fg~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~   77 (325)
T cd05602           5 KGSFGKVLLARHKA-------EEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDY   77 (325)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeC
Confidence            79999999999875       78899999986431   122234444444 56778999999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++....
T Consensus        78 ~~~~~L~~~~~-------~~~~~~~~~~~~~~~qi~~~L~~lH---~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~  147 (325)
T cd05602          78 INGGELFYHLQ-------RERCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENI  147 (325)
T ss_pred             CCCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEEccCCCCcccc
Confidence            99999999993       3456788889999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......|++.|++||+..      ++     |++  +|+ |.. |+... .....++.........+  +..+..
T Consensus       148 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~~-~~~~~~~~i~~~~~~~~--~~~~~~  222 (325)
T cd05602         148 EHNG-TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLP-PFYSR-NTAEMYDNILNKPLQLK--PNITNS  222 (325)
T ss_pred             cCCC-CcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCC-CCCCC-CHHHHHHHHHhCCcCCC--CCCCHH
Confidence            2221 223456899998887543      22     888  888 543 44332 22222222222222211  255678


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+++.+||+.||.+|| +.+.+.
T Consensus       223 ~~~li~~~l~~~p~~R~~~~~~~~  246 (325)
T cd05602         223 ARHLLEGLLQKDRTKRLGAKDDFM  246 (325)
T ss_pred             HHHHHHHHcccCHHHCCCCCCCHH
Confidence            99999999999999999 775443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.98  E-value=8.3e-32  Score=231.00  Aligned_cols=239  Identities=16%  Similarity=0.215  Sum_probs=175.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||++.+..  .....++..||+|.++... ....+.+.+|+.+++++ +|+||+++++++...+..++++||+.
T Consensus        45 ~G~~g~V~~~~~~~--~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~  122 (302)
T cd05055          45 AGAFGKVVEATAYG--LSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPILVITEYCC  122 (302)
T ss_pred             ccCCeeEEEEEEec--CCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCceEEEEEcCC
Confidence            89999999997521  0001145689999987643 23346789999999999 79999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++...     ....+++.++..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++......
T Consensus       123 ~~~L~~~i~~~-----~~~~l~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~  194 (302)
T cd05055         123 YGDLLNFLRRK-----RESFLTLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMND  194 (302)
T ss_pred             CCcHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHH---HCCeehhhhccceEEEcCCCeEEECCCcccccccCC
Confidence            99999999321     2234899999999999999999999   899999999999999999999999999999866443


Q ss_pred             Ccc-chhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          196 ETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       196 ~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ... ......++..|++|+...      ++     |++  +|+ ....|+......... ...+........+...+..+
T Consensus       195 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  273 (302)
T cd05055         195 SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKF-YKLIKEGYRMAQPEHAPAEI  273 (302)
T ss_pred             CceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHH-HHHHHcCCcCCCCCCCCHHH
Confidence            221 122234566787777532      22     888  776 344443322211111 11111111111112445689


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      .+++.+||+.+|++|| +.++++.|+++
T Consensus       274 ~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         274 YDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             HHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence            9999999999999999 99999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.98  E-value=7e-32  Score=227.53  Aligned_cols=237  Identities=14%  Similarity=0.150  Sum_probs=169.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....     ......+++|.+..... .....+.+|+..++.++|+||+++++.+......++||||+++
T Consensus         5 ~G~fg~v~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~   79 (269)
T cd05042           5 NGWFGKVLLGEAHR-----GMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPL   79 (269)
T ss_pred             ccCCceEEEEEEec-----CCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCC
Confidence            79999999997531     01445789998765432 2345688999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.++++....  ......++..+..++.|++.||+|||   +.+++|+||||+|||++.++.+||+|||++.......
T Consensus        80 g~L~~~l~~~~~--~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~  154 (269)
T cd05042          80 GDLKNYLRSNRG--MVAQMAQKDVLQRMACEVASGLLWLH---QADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPED  154 (269)
T ss_pred             CcHHHHHHhccc--cccccccHHHHHHHHHHHHHHHHHHH---hcCEecccccHhheEecCCCcEEEeccccccccccch
Confidence            999999954321  12334567888999999999999999   8999999999999999999999999999986543322


Q ss_pred             cc-chhhhhccccccccccc-------------CCC-----CeE--EEc-cchhhhhhccchh---hhcccccccCCCCC
Q 044211          197 TH-ISELLSGLRAFDLARLN-------------EDD-----GYV--VLL-DHIKKYFEEDRLN---EIIDPLIMGDRSCS  251 (292)
Q Consensus       197 ~~-~~~~~~g~~~y~~~~~~-------------~~~-----Gvi--el~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~  251 (292)
                      .. ......++..|++|++.             .++     |++  ||+ +...|+.......   ..+.......+.+.
T Consensus       155 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  234 (269)
T cd05042         155 YYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQ  234 (269)
T ss_pred             heeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCc
Confidence            11 12233455668777753             122     888  888 4444443322211   11111110111111


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      .....+..+.+++..|| .||++|| +.+|++.|.
T Consensus       235 ~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         235 LDLKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             ccccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            11355677889999999 4999999 999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.98  E-value=5.5e-32  Score=238.14  Aligned_cols=226  Identities=12%  Similarity=0.145  Sum_probs=173.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.+...   .......+.+|+.+++.++||||+++++++..++..++||||+
T Consensus        53 ~G~fg~Vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~  125 (370)
T cd05621          53 RGAFGEVQLVRHKS-------SQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYM  125 (370)
T ss_pred             ecCCeEEEEEEECC-------CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEcCC
Confidence            89999999999875       7899999998642   2223455789999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.        ...+++..+..++.|++.||.|||   +.+|+||||||+|||+++++.+||+|||++.....
T Consensus       126 ~gg~L~~~l~--------~~~~~~~~~~~~~~qil~aL~~LH---~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~  194 (370)
T cd05621         126 PGGDLVNLMS--------NYDVPEKWAKFYTAEVVLALDAIH---SMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDE  194 (370)
T ss_pred             CCCcHHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEEecccceeccc
Confidence            9999999993        235788999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCccchhhhhccccccccccc----------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccC--CCCCCch
Q 044211          195 GETHISELLSGLRAFDLARLN----------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD--RSCSGNQ  254 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~----------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  254 (292)
                      ..........||+.|++||..          .++     |++  +|+ |.. |+.... ....+.......  ...+...
T Consensus       195 ~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~-Pf~~~~-~~~~~~~i~~~~~~~~~p~~~  272 (370)
T cd05621         195 TGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDT-PFYADS-LVGTYSKIMDHKNSLNFPEDV  272 (370)
T ss_pred             CCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCC-CCCCCC-HHHHHHHHHhCCcccCCCCcc
Confidence            333333456799999888753          233     888  888 544 443322 111222222111  1122212


Q ss_pred             HHHHHHHHHHhHhcCCCCCC--CC-HHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVD--RP-MVDVAKK  283 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~--RP-~~el~~~  283 (292)
                      ..+..+.+++.+|+..+|.+  || +.|+++.
T Consensus       273 ~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         273 EISKHAKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             cCCHHHHHHHHHHccCchhccCCCCHHHHhcC
Confidence            45678899999999866554  89 9888765

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.98  E-value=6.1e-32  Score=226.26  Aligned_cols=234  Identities=21%  Similarity=0.273  Sum_probs=173.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|++|.||+|.+..    .......||+|.+..... ...+.+.+|+..+++++||||+++++.+.. ...++++||+++
T Consensus         5 ~g~~~~v~~~~~~~----~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           5 DGSFGVVRRGEWST----SGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             ccCcccEEeeeEec----CCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            79999999998842    000234699999987655 566789999999999999999999999988 889999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++...     ....+++..++.++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++..+....
T Consensus        80 ~~L~~~l~~~-----~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~  151 (257)
T cd05040          80 GSLLDRLRKD-----ALGHFLISTLCDYAVQIANGMRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNE  151 (257)
T ss_pred             CcHHHHHHhc-----ccccCcHHHHHHHHHHHHHHHHHHH---hCCccccccCcccEEEecCCEEEeccccccccccccc
Confidence            9999999422     1156899999999999999999999   8999999999999999999999999999998775432


Q ss_pred             cc--chhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 TH--ISELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~--~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ..  ......++..|.+|++...      +     |++  +|+. ...|+... ...+..............+...+..+
T Consensus       152 ~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
T cd05040         152 DHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGL-SGSQILKKIDKEGERLERPEACPQDI  230 (257)
T ss_pred             cceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHhcCCcCCCCccCCHHH
Confidence            21  1122345667877775432      2     877  7763 33333211 11111111111111111112456789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      .+++.+||+.+|++|| +.++++.|.
T Consensus       231 ~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         231 YNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             HHHHHHHCCCCcccCCCHHHHHHHhc
Confidence            9999999999999999 999999875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=5.6e-32  Score=229.45  Aligned_cols=227  Identities=17%  Similarity=0.197  Sum_probs=176.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||++.+..       +++.||+|.+........+.+..|+.++++++|+||+++++.+..+...++||||++++
T Consensus        15 ~g~~~~v~~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (280)
T cd06611          15 DGAFGKVYKAQHKE-------TGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDGG   87 (280)
T ss_pred             CCCCceEEEEEEcC-------CCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCCC
Confidence            89999999999865       78999999998765566678999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..      ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++........
T Consensus        88 ~L~~~~~~------~~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  158 (280)
T cd06611          88 ALDSIMLE------LERGLTEPQIRYVCRQMLEALNFLH---SHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQ  158 (280)
T ss_pred             cHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEECCCCCEEEccCccchhhccccc
Confidence            99999842      2356899999999999999999999   89999999999999999999999999999876543221


Q ss_pred             cchhhhhccccccccccc-----------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCC-CCCchHHH
Q 044211          198 HISELLSGLRAFDLARLN-----------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRS-CSGNQQQL  257 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~-----------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  257 (292)
                       ......++..|.+|+..           .++     |++  +|+ |+ .|+....... .+........+ ...+...+
T Consensus       159 -~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~-~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  235 (280)
T cd06611         159 -KRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQME-PPHHELNPMR-VLLKILKSEPPTLDQPSKWS  235 (280)
T ss_pred             -ccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCC-CCcccCCHHH-HHHHHhcCCCCCcCCcccCC
Confidence             12334577778777653           123     888  888 54 3433322211 11111222111 11123556


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+.+++.+||+.+|.+|| +.++++.
T Consensus       236 ~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         236 SSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             HHHHHHHHHHhccChhhCcCHHHHhcC
Confidence            7899999999999999999 9998865

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.98  E-value=3.3e-32  Score=225.40  Aligned_cols=230  Identities=14%  Similarity=0.127  Sum_probs=171.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCC-ccceeeeeecCC------cce
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRC-IFKLIGCCLETQ------IPI  108 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~n-iv~~~~~~~~~~------~~~  108 (292)
                      +|+||+||+|....       +|+.||+|.+.....  .-.....+|+.+++.|+|+| |+.+++++.+.+      .++
T Consensus        21 eGtyg~Vykar~~~-------~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~   93 (323)
T KOG0594|consen   21 EGTYGVVYKARSKR-------TGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLY   93 (323)
T ss_pred             CCCceEEEEEEEec-------CCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEE
Confidence            99999999999987       999999999876533  23456789999999999999 999999999877      788


Q ss_pred             EEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccc
Q 044211          109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSF  188 (292)
Q Consensus       109 lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~  188 (292)
                      +|+||.+. +|..++......   ...++...+..++.|++.||.|||   +++|+||||||.||||+++|.+||+|||+
T Consensus        94 lvfe~~d~-DL~~ymd~~~~~---~~g~~~~~ik~~m~Qll~gl~~~H---~~~IlHRDLKPQNlLi~~~G~lKlaDFGl  166 (323)
T KOG0594|consen   94 LVFEFLDR-DLKKYMDSLPKK---PQGLPPRLIKSFMRQLLRGLAFLH---SHGILHRDLKPQNLLISSSGVLKLADFGL  166 (323)
T ss_pred             EEEEeecc-cHHHHHHhcccc---ccCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCcceEEECCCCcEeeeccch
Confidence            99999996 999999644321   146777899999999999999999   99999999999999999999999999999


Q ss_pred             ccccCCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhh--------------
Q 044211          189 SISIPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEI--------------  239 (292)
Q Consensus       189 a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~--------------  239 (292)
                      |+...-+. .....-++|.+|.+|++.-.+            ||+  ||+ ++. -|.......++              
T Consensus       167 Ara~~ip~-~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~-LFpG~se~~ql~~If~~lGtP~e~~  244 (323)
T KOG0594|consen  167 ARAFSIPM-RTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRP-LFPGDSEIDQLFRIFRLLGTPNEKD  244 (323)
T ss_pred             HHHhcCCc-ccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCC-CCCCCcHHHHHHHHHHHcCCCCccC
Confidence            98664222 223445678888777665433            888  888 443 11111111000              


Q ss_pred             cc-----cccccCCCCCC-c-------hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          240 ID-----PLIMGDRSCSG-N-------QQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       240 ~~-----~~~~~~~~~~~-~-------~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.     +......+... +       +...++..+++.+|++++|..|. +...+.+
T Consensus       245 Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  245 WPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             CCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence            00     00000000000 0       11124789999999999999999 9888876

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.98  E-value=1.2e-31  Score=228.84  Aligned_cols=227  Identities=15%  Similarity=0.171  Sum_probs=175.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||+|....       +++.|++|.+..........+.+|+..++.++|+||+++++++..++..++||||++++
T Consensus        22 ~g~~g~vy~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   94 (292)
T cd06644          22 DGAFGKVYKAKNKE-------TGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGG   94 (292)
T ss_pred             CCCCeEEEEEEECC-------CCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCC
Confidence            89999999999875       78999999998776666678899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|..++.      .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++....... 
T Consensus        95 ~l~~~~~------~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~-  164 (292)
T cd06644          95 AVDAIML------ELDRGLTEPQIQVICRQMLEALQYLH---SMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTL-  164 (292)
T ss_pred             cHHHHHH------hhcCCCCHHHHHHHHHHHHHHHHHHh---cCCeeecCCCcceEEEcCCCCEEEccCccceeccccc-
Confidence            9988873      22456899999999999999999999   8999999999999999999999999999987543321 


Q ss_pred             cchhhhhcccccccccccC-----------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCC-CCCCchHHH
Q 044211          198 HISELLSGLRAFDLARLNE-----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR-SCSGNQQQL  257 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  257 (292)
                      .......++..|.+|++..           ++     |++  +|+ |.. |+........ ......... ....+...+
T Consensus       165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~-p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  242 (292)
T cd06644         165 QRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEP-PHHELNPMRV-LLKIAKSEPPTLSQPSKWS  242 (292)
T ss_pred             cccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCC-CCccccHHHH-HHHHhcCCCccCCCCcccC
Confidence            1223345677787777531           22     888  888 543 3322221111 111111111 111223556


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+.+++.+||+.||++|| +.++++.
T Consensus       243 ~~~~~li~~~l~~~p~~Rp~~~~il~~  269 (292)
T cd06644         243 MEFRDFLKTALDKHPETRPSAAQLLEH  269 (292)
T ss_pred             HHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            7899999999999999999 9999763

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.98  E-value=4.8e-32  Score=239.72  Aligned_cols=227  Identities=15%  Similarity=0.128  Sum_probs=170.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||+||+|....       +++.||+|.+...   .......+.+|+.+++.++|+||+++++++...+.+++||||+
T Consensus        11 ~G~~g~Vy~~~~~~-------~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~   83 (381)
T cd05626          11 IGAFGEVCLACKVD-------THALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYI   83 (381)
T ss_pred             ecCCEEEEEEEECC-------CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecC
Confidence            89999999999876       8899999998653   2234457889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++..+..
T Consensus        84 ~gg~L~~~l~-------~~~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~  153 (381)
T cd05626          84 PGGDMMSLLI-------RMEVFPEVLARFYIAELTLAIESVH---KMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRW  153 (381)
T ss_pred             CCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCcHHHEEECCCCCEEEeeCcCCccccc
Confidence            9999999993       3456889999999999999999999   89999999999999999999999999999754311


Q ss_pred             CCc----------------------------------------------cchhhhhcccccccccccCC------C----
Q 044211          195 GET----------------------------------------------HISELLSGLRAFDLARLNED------D----  218 (292)
Q Consensus       195 ~~~----------------------------------------------~~~~~~~g~~~y~~~~~~~~------~----  218 (292)
                      ...                                              .......||..|++||....      +    
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwS  233 (381)
T cd05626         154 THNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWS  233 (381)
T ss_pred             ccccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceee
Confidence            000                                              00123468999988886432      2    


Q ss_pred             -CeE--EEc-cchhhhhhccchhhhccccc--ccCCCCCCchHHHHHHHHHHhH--hcCCCCCCCC-HHHHHHH
Q 044211          219 -GYV--VLL-DHIKKYFEEDRLNEIIDPLI--MGDRSCSGNQQQLQAFAHLIFE--CVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       219 -Gvi--el~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~li~~--Cl~~dP~~RP-~~el~~~  283 (292)
                       ||+  ||+ |.. |+........ .....  ......+.....++.+.+++.+  |+..+|..|| +.+++..
T Consensus       234 lG~il~elltG~~-Pf~~~~~~~~-~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~h  305 (381)
T cd05626         234 VGVILFEMLVGQP-PFLAPTPTET-QLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAH  305 (381)
T ss_pred             hhhHHHHHHhCCC-CCcCCCHHHH-HHHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence             888  888 654 4432221111 11111  1111111112456788889988  6667777799 9999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.98  E-value=3.3e-34  Score=225.47  Aligned_cols=226  Identities=17%  Similarity=0.235  Sum_probs=185.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|.|+.|+++..+.       +|+.+|+|+++..  +....+++.+|+.+-+.|+||||++++..+......|+|+|++.
T Consensus        21 kG~FSvVrRc~~~~-------tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~   93 (355)
T KOG0033|consen   21 KGAFSVVRRCVHKT-------TGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVT   93 (355)
T ss_pred             cCchHHHHHHHhcc-------chHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEeccc
Confidence            99999999999987       9999999998643  33466889999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC---CceEEeeccccccc
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE---NVAKLFDFSFSISI  192 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~---~~~kl~Dfg~a~~~  192 (292)
                      |+.|..-|       -.+...++..+..++.||+.||.|+|   .++|+|||+||+|+++.+.   --+||+|||+|..+
T Consensus        94 G~dl~~eI-------V~R~~ySEa~aSH~~rQiLeal~yCH---~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l  163 (355)
T KOG0033|consen   94 GGELFEDI-------VAREFYSEADASHCIQQILEALAYCH---SNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEV  163 (355)
T ss_pred             chHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH---hcCceeccCChhheeeeeccCCCceeecccceEEEe
Confidence            99997666       23466889999999999999999999   8999999999999999733   34999999999988


Q ss_pred             CCCCccchhhhhcccccccccccCCC-----------CeE-EEc-cchhhhhhccchhhhcccccccCCCCC--CchHHH
Q 044211          193 PEGETHISELLSGLRAFDLARLNEDD-----------GYV-VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS--GNQQQL  257 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi-el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  257 (292)
                      ..  ........||+.|++|++..+-           ||+ .++ ...+||+.+. -..+++..+.+.+..+  ..+...
T Consensus       164 ~~--g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~-~~rlye~I~~g~yd~~~~~w~~is  240 (355)
T KOG0033|consen  164 ND--GEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED-QHRLYEQIKAGAYDYPSPEWDTVT  240 (355)
T ss_pred             CC--ccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCcc-HHHHHHHHhccccCCCCcccCcCC
Confidence            72  3334567899999999988766           888 655 5566776633 3444455555554433  345778


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++..+|+.++|..||.+|. +.|.+..
T Consensus       241 ~~Ak~LvrrML~~dP~kRIta~EAL~H  267 (355)
T KOG0033|consen  241 PEAKSLIRRMLTVNPKKRITADEALKH  267 (355)
T ss_pred             HHHHHHHHHHhccChhhhccHHHHhCC
Confidence            8999999999999999999 9887753

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.98  E-value=1.7e-31  Score=232.30  Aligned_cols=247  Identities=17%  Similarity=0.218  Sum_probs=179.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||++.+....+........||+|.++... ......+.+|+.+++++ +||||+++++++...+..++++||+.
T Consensus        22 ~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~  101 (334)
T cd05100          22 EGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYAS  101 (334)
T ss_pred             cccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEEEEecCC
Confidence            89999999998632111112234579999987542 33456789999999999 79999999999999889999999999


Q ss_pred             CCChhHHhhhhCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          116 CGSLADRIRIHHTP---------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       116 ~gsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      +|+|.+++.+....         ......+++..++.++.|++.||.|||   ..+++|+||+|+||+++.++.+||+||
T Consensus       102 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Nill~~~~~~kL~Df  178 (334)
T cd05100         102 KGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA---SQKCIHRDLAARNVLVTEDNVMKIADF  178 (334)
T ss_pred             CCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCCcEEECCc
Confidence            99999999543211         112345788899999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCccc-hhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          187 SFSISIPEGETHI-SELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       187 g~a~~~~~~~~~~-~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      |+++......... .....++..|++|+....      +     |++  ||+ +...|+.. ............... ..
T Consensus       179 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~-~~~~~~~~~~~~~~~-~~  256 (334)
T cd05100         179 GLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPG-IPVEELFKLLKEGHR-MD  256 (334)
T ss_pred             ccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHHcCCC-CC
Confidence            9998664322111 111223456777765432      2     888  777 34433322 222222222212111 11


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+..++..+.+++.+||+.+|++|| +.++++.|+++..
T Consensus       257 ~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~  295 (334)
T cd05100         257 KPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLT  295 (334)
T ss_pred             CCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhh
Confidence            1235667899999999999999999 9999999998763

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.98  E-value=1.3e-31  Score=229.18  Aligned_cols=244  Identities=15%  Similarity=0.146  Sum_probs=172.4

Q ss_pred             ccCCCeeEeeecCCCCc---------cCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcc
Q 044211           38 IKNGYKLYEGFFQNRPI---------SGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~---------~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~  107 (292)
                      +|+||.||++.+.....         ....+...||+|.+.... ......+.+|+.+++.++|+||+++++++...+..
T Consensus        15 ~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~   94 (296)
T cd05095          15 EGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPL   94 (296)
T ss_pred             CCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence            89999999986421000         011134579999987643 33446789999999999999999999999999999


Q ss_pred             eEEEeccCCCChhHHhhhhCCC----CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEE
Q 044211          108 ILVFEYINCGSLADRIRIHHTP----QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKL  183 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~----~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl  183 (292)
                      ++++||+.+|+|.+++......    ......+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.++|
T Consensus        95 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dlkp~Nili~~~~~~~l  171 (296)
T cd05095          95 CMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLS---SLNFVHRDLATRNCLVGKNYTIKI  171 (296)
T ss_pred             EEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCeecccCChheEEEcCCCCEEe
Confidence            9999999999999999543211    112345788899999999999999999   899999999999999999999999


Q ss_pred             eecccccccCCCCccc-hhhhhcccccccccc------cCCC-----CeE--EEc-cc-hhhhhhccchhhhcc------
Q 044211          184 FDFSFSISIPEGETHI-SELLSGLRAFDLARL------NEDD-----GYV--VLL-DH-IKKYFEEDRLNEIID------  241 (292)
Q Consensus       184 ~Dfg~a~~~~~~~~~~-~~~~~g~~~y~~~~~------~~~~-----Gvi--el~-~~-~~~~~~~~~~~~~~~------  241 (292)
                      +|||++..+....... .....++..|++++.      +.++     |++  ||+ +. ..|+.. ....+.+.      
T Consensus       172 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~-~~~~~~~~~~~~~~  250 (296)
T cd05095         172 ADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQ-LSDEQVIENTGEFF  250 (296)
T ss_pred             ccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccc-cChHHHHHHHHHHH
Confidence            9999998664332211 112223455655543      3333     888  887 43 333322 11111111      


Q ss_pred             -cccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          242 -PLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       242 -~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                       ....... .+.+..++..+.+++.+||+.||++|| +.+|++.|++
T Consensus       251 ~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         251 RDQGRQVY-LPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             hhcccccc-CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence             0000011 111135667899999999999999999 9999999863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.98  E-value=9.4e-32  Score=225.01  Aligned_cols=227  Identities=22%  Similarity=0.320  Sum_probs=172.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++.+.        ++..+|+|.+.... .....+.+|+.++++++|||++++++++......++++||++++
T Consensus        14 ~g~~g~v~~~~~~--------~~~~~~~k~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (256)
T cd05112          14 SGQFGLVWLGYWL--------EKRKVAIKTIREGA-MSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHG   84 (256)
T ss_pred             CcccceEEEEEEe--------CCCeEEEEECCCCC-CCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCC
Confidence            8999999999985        67889999987542 23457889999999999999999999999888999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.      .....+++..+..++.+++.|+.|||   +.+++|+||+|+||+++.++.++|+|||++........
T Consensus        85 ~L~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  155 (256)
T cd05112          85 CLSDYLR------AQRGKFSQETLLGMCLDVCEGMAYLE---SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQY  155 (256)
T ss_pred             cHHHHHH------hCccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccccceEEEcCCCeEEECCCcceeecccCcc
Confidence            9999983      22346788999999999999999999   89999999999999999999999999999876644332


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|.+|+....      +     |++  ||+ ....|+... ......+....+.... .+...+..+.+|
T Consensus       156 ~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l  233 (256)
T cd05112         156 TSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENR-SNSEVVETINAGFRLY-KPRLASQSVYEL  233 (256)
T ss_pred             cccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcC-CHHHHHHHHhCCCCCC-CCCCCCHHHHHH
Confidence            22222334556777765432      2     887  777 344444322 2222222211111111 112345689999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      +.+||+.+|++|| +.++++.|
T Consensus       234 ~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         234 MQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             HHHHcccChhhCCCHHHHHHhh
Confidence            9999999999999 99999887

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.98  E-value=1.4e-31  Score=225.98  Aligned_cols=237  Identities=19%  Similarity=0.221  Sum_probs=173.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCe--EEEEEeecCC-CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQER--PVSVMKFDES-KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~--~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       ++.  .+++|.++.. .......+.+|+.++.++ +||||+++++++...+..+++|||
T Consensus         5 ~g~~g~v~~~~~~~-------~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~   77 (270)
T cd05047           5 EGNFGQVLKARIKK-------DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEY   77 (270)
T ss_pred             CCCCceEEEEEEcC-------CCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEe
Confidence            79999999999853       443  5788888753 234456788999999999 799999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          114 INCGSLADRIRIHHTP---------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                      +++|+|.+++......         ......+++..+..++.|++.||.|||   +.+++|+||||+||++++++.+||+
T Consensus        78 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nili~~~~~~kl~  154 (270)
T cd05047          78 APHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIA  154 (270)
T ss_pred             CCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccccceEEEcCCCeEEEC
Confidence            9999999999543211         112345889999999999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCC
Q 044211          185 DFSFSISIPEGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       185 Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      |||++......  ........+..|.+|++..      ++     |++  ||+ ....|+... ...........+. ..
T Consensus       155 dfgl~~~~~~~--~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~-~~~~~~~~~~~~~-~~  230 (270)
T cd05047         155 DFGLSRGQEVY--VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM-TCAELYEKLPQGY-RL  230 (270)
T ss_pred             CCCCccccchh--hhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCcccc-CHHHHHHHHhCCC-CC
Confidence            99998633211  1111122244576666532      22     887  887 344444322 2222222111111 11


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      ..+..++..+.+++.+||+.||.+|| +.+++..|+++.
T Consensus       231 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         231 EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             CCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence            11134566899999999999999999 999999998864

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.98  E-value=1.6e-31  Score=228.71  Aligned_cols=238  Identities=17%  Similarity=0.217  Sum_probs=174.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCe--EEEEEeecCC-CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQER--PVSVMKFDES-KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~--~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       ++.  .+++|.++.. .....+.+.+|+.+++++ +||||+++++++...+..++++||
T Consensus        12 ~g~~g~v~~~~~~~-------~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~   84 (297)
T cd05089          12 EGNFGQVIRAMIKK-------DGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEY   84 (297)
T ss_pred             CCCcceEEEEEecC-------CCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEe
Confidence            89999999998853       433  4788888753 333456789999999999 799999999999998899999999


Q ss_pred             cCCCChhHHhhhhCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          114 INCGSLADRIRIHHTPQ---------PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                      +++|+|.+++.......         .....+++..++.++.|++.||.|||   +.+++|+||||+|||++.++.+||+
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~  161 (297)
T cd05089          85 APYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS---EKQFIHRDLAARNVLVGENLASKIA  161 (297)
T ss_pred             cCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCcCCcceEEECCCCeEEEC
Confidence            99999999995432110         12246889999999999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCC
Q 044211          185 DFSFSISIPEGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       185 Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      |||++.......  .......+..|++|+...      ++     |++  ||+ ....|+... ...+.......+.. .
T Consensus       162 dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~-~~~~~~~~~~~~~~-~  237 (297)
T cd05089         162 DFGLSRGEEVYV--KKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGM-TCAELYEKLPQGYR-M  237 (297)
T ss_pred             CcCCCcccccee--ccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHhcCCC-C
Confidence            999986432111  111112234576666432      22     888  887 344444322 22222222221111 1


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      ..+..++..+.+|+.+||+.+|.+|| +.++++.|+.+.+
T Consensus       238 ~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~  277 (297)
T cd05089         238 EKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLE  277 (297)
T ss_pred             CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            11135667899999999999999999 9999999988765

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.98  E-value=9.1e-32  Score=225.22  Aligned_cols=225  Identities=18%  Similarity=0.243  Sum_probs=171.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec-CCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE-TQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~~~~  116 (292)
                      +|+||.||++..         .+..||+|.+....  ..+.+.+|+.++++++|+|++++++++.. .+..++++||+++
T Consensus        16 ~g~~~~v~~~~~---------~~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~   84 (256)
T cd05082          16 KGEFGDVMLGDY---------RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK   84 (256)
T ss_pred             ccCCCeEEEEEE---------cCCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCC
Confidence            899999999988         78889999986543  34678999999999999999999998654 4568999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++...     ....+++..++.++.|++.||+|||   ..+++|+||+|+||++++++.+||+|||++.......
T Consensus        85 ~~L~~~~~~~-----~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~  156 (256)
T cd05082          85 GSLVDYLRSR-----GRSVLGGDCLLKFSLDVCEAMEYLE---ANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ  156 (256)
T ss_pred             CcHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccccchheEEEcCCCcEEecCCccceeccccC
Confidence            9999999422     2345889999999999999999999   8999999999999999999999999999987654322


Q ss_pred             ccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      .    ...++..|++|++...      +     |++  +|+ ....|+.. ....+.... +........++.+++.+.+
T Consensus       157 ~----~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  230 (256)
T cd05082         157 D----TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR-IPLKDVVPR-VEKGYKMDAPDGCPPVVYD  230 (256)
T ss_pred             C----CCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCC-CCHHHHHHH-HhcCCCCCCCCCCCHHHHH
Confidence            1    2233456766665432      2     877  777 34433322 222222111 1111111222366789999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      ++.+||+.+|++|| +.++++.|+++
T Consensus       231 li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         231 VMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             HHHHHhcCChhhCcCHHHHHHHHhcC
Confidence            99999999999999 99999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.98  E-value=4.5e-32  Score=234.61  Aligned_cols=219  Identities=17%  Similarity=0.206  Sum_probs=166.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHH-HHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIV-YASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~-~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|....       +++.||+|.+....   ......+..|.. +++.++||||+++++++...+..++||||
T Consensus         5 ~G~~g~Vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   77 (321)
T cd05603           5 KGSFGKVLLAKRKS-------DGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDY   77 (321)
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcC
Confidence            79999999999875       88999999986431   122344555554 57888999999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|...+.       ....+++..+..++.||+.||.|||   ..+++||||||+||+++.++.+||+|||++....
T Consensus        78 ~~~~~L~~~l~-------~~~~~~~~~~~~~~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~  147 (321)
T cd05603          78 VNGGELFFHLQ-------RERCFLEPRARFYAAEVASAIGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGV  147 (321)
T ss_pred             CCCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEccCCCCccCC
Confidence            99999998883       3456888999999999999999999   8999999999999999999999999999987542


Q ss_pred             CCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......|++.|++||...      ++     |++  ||+ |.. |+... ......+.........+  ...+..
T Consensus       148 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~~-~~~~~~~~i~~~~~~~~--~~~~~~  222 (321)
T cd05603         148 EPEE-TTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLP-PFYSR-DVSQMYDNILHKPLQLP--GGKTVA  222 (321)
T ss_pred             CCCC-ccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCC-CCCCC-CHHHHHHHHhcCCCCCC--CCCCHH
Confidence            2221 223456888998877543      22     888  888 544 44332 22223333232222222  245668


Q ss_pred             HHHHHhHhcCCCCCCCC-HH
Q 044211          260 FAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~  278 (292)
                      +.+++.+||+.||.+|| +.
T Consensus       223 ~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         223 ACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             HHHHHHHHccCCHhhcCCCC
Confidence            99999999999999999 64

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.98  E-value=9.5e-32  Score=226.72  Aligned_cols=235  Identities=16%  Similarity=0.145  Sum_probs=168.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....     ......+++|.++... ....+.+.+|+..++.++||||+++++.+......++||||+++
T Consensus         5 ~G~~g~v~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   79 (268)
T cd05086           5 NGWFGKVLLSEIYT-----DTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCEL   79 (268)
T ss_pred             CCcCceEEEEEEEc-----CCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCC
Confidence            79999999997641     0022356777766543 33456799999999999999999999999998899999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++.+...   .....+...+..++.|++.||.|||   +.+++|+||||+|||++.++.++|+|||++.......
T Consensus        80 ~~L~~~l~~~~~---~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~  153 (268)
T cd05086          80 GDLKSYLSQEQW---HRRNSQLLLLQRMACEIAAGVTHMH---KHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKED  153 (268)
T ss_pred             CcHHHHHHhhhc---ccccccHHHHHHHHHHHHHHHHHHH---HCCeeccCCccceEEEcCCccEEecccccccccCcch
Confidence            999999953321   2345677788899999999999999   8999999999999999999999999999986432221


Q ss_pred             -ccchhhhhcccccccccccC-------------CC-----CeE--EEc-cchhhhhhccchhhhcccccccC----CCC
Q 044211          197 -THISELLSGLRAFDLARLNE-------------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD----RSC  250 (292)
Q Consensus       197 -~~~~~~~~g~~~y~~~~~~~-------------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~----~~~  250 (292)
                       ........++..|++|++..             ++     |++  ||+ +...|+.... ..+.+...+.+.    ..+
T Consensus       154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~  232 (268)
T cd05086         154 YIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLS-DREVLNHVIKDQQVKLFKP  232 (268)
T ss_pred             hhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHHhhcccccCCC
Confidence             11223345677887777632             22     888  887 5444443222 111111111111    011


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      .......+.+.+++..|| .+|++|| +.+|++.|.
T Consensus       233 ~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         233 QLELPYSERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             ccCCCCcHHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            111235667889999999 5799999 999988873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.98  E-value=8.6e-32  Score=228.94  Aligned_cols=231  Identities=17%  Similarity=0.146  Sum_probs=171.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeee-----cCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCL-----ETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~-----~~~~~~lv~  111 (292)
                      +|+||.||++....       +++.||+|.+.... .....+.+|+.+++++ +|+||+++++++.     ..+..++||
T Consensus        28 ~g~~~~vy~~~~~~-------~~~~~~ik~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~   99 (286)
T cd06638          28 KGTYGKVFKVLNKK-------NGSKAAVKILDPIH-DIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVL   99 (286)
T ss_pred             cCCCcEEEEEEECC-------CCceeEEEeecccc-chHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEEE
Confidence            89999999999875       88999999986542 2235678899999999 6999999999884     335689999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+++++|.+++..+.   .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++..
T Consensus       100 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~  173 (286)
T cd06638         100 ELCNGGSVTDLVKGFL---KRGERMEEPIIAYILHEALMGLQHLH---VNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQ  173 (286)
T ss_pred             eecCCCCHHHHHHHhh---ccCccccHHHHHHHHHHHHHHHHHHH---hCCccccCCCHHhEEECCCCCEEEccCCceee
Confidence            9999999999884322   23456889999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCccchhhhhccccccccccc-----------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC
Q 044211          192 IPEGETHISELLSGLRAFDLARLN-----------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~-----------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (292)
                      ...... ......|+..|++|++.           .++     |++  +|+ |.. |+......................
T Consensus       174 ~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~  251 (286)
T cd06638         174 LTSTRL-RRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDP-PLADLHPMRALFKIPRNPPPTLHQ  251 (286)
T ss_pred             cccCCC-ccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCC-CCCCCchhHHHhhccccCCCcccC
Confidence            643322 22334678889888753           223     887  887 543 333322222221111111111111


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      +...+..+.+++.+||+.||++|| +.|+++.+
T Consensus       252 ~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~  284 (286)
T cd06638         252 PELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHV  284 (286)
T ss_pred             CCCcCHHHHHHHHHHccCCcccCCCHHHHhhcc
Confidence            123456799999999999999999 99998753

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.98  E-value=1.2e-31  Score=223.81  Aligned_cols=229  Identities=23%  Similarity=0.300  Sum_probs=174.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||++.+.        .++.|++|.+...... ....+.+|+.++++++|+||+++++++......++|+||+.+
T Consensus         5 ~g~~g~v~~~~~~--------~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~   76 (251)
T cd05041           5 KGNFGDVYKGVLK--------GNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPG   76 (251)
T ss_pred             cCCCceEEEEEEe--------CCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCC
Confidence            6999999999986        6899999998765433 456789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++..      ....+++..+..++.+++.|+.|||   +.+++|+||+|+||+++.++.++|+|||++.......
T Consensus        77 ~~l~~~l~~------~~~~~~~~~~~~~~~~~~~~l~~lH---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~  147 (251)
T cd05041          77 GSLLTFLRK------KKNRLTVKKLLQMSLDAAAGMEYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGI  147 (251)
T ss_pred             CcHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHH---hCCEehhhcCcceEEEcCCCcEEEeeccccccccCCc
Confidence            999999832      2346788999999999999999999   8999999999999999999999999999997664322


Q ss_pred             ccch-hhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          197 THIS-ELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       197 ~~~~-~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      .... .....+..|.+|+...      ++     |++  +|+ +...|+..... ...... +........+...+..+.
T Consensus       148 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  225 (251)
T cd05041         148 YTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSN-QQTRER-IESGYRMPAPQLCPEEIY  225 (251)
T ss_pred             ceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCH-HHHHHH-HhcCCCCCCCccCCHHHH
Confidence            2111 1222345576666432      22     887  877 45444432211 111111 111111112236677999


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      +++.+||+.+|++|| +.|+++.|+
T Consensus       226 ~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         226 RLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             HHHHHHhccChhhCcCHHHHHHHhh
Confidence            999999999999999 999999886

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.98  E-value=1.1e-31  Score=224.73  Aligned_cols=221  Identities=19%  Similarity=0.231  Sum_probs=164.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCC----------eEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQE----------RPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~----------~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~  107 (292)
                      +|+||.||+|.+..       ++          ..|++|.+...... ...+.+|+.++++++||||+++++++.. ...
T Consensus         5 ~G~~~~v~~~~~~~-------~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~   75 (259)
T cd05037           5 QGTFTNIYKGVLRV-------QSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-DEN   75 (259)
T ss_pred             ccccceEEEEEEec-------cCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-CCc
Confidence            79999999999863       23          35888887655333 5778999999999999999999999988 778


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC-------c
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-------V  180 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~-------~  180 (292)
                      ++|+||+.+|+|.+++...      ...+++..+..++.|++.||.|||   ..+++|+||||+||+++.++       .
T Consensus        76 ~lv~e~~~~~~L~~~l~~~------~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dlkp~Nill~~~~~~~~~~~~  146 (259)
T cd05037          76 IMVEEYVKFGPLDVFLHRE------KNNVSLHWKLDVAKQLASALHYLE---DKKLVHGNVCGKNILVARYGLNEGYVPF  146 (259)
T ss_pred             EEEEEcCCCCcHHHHHHhh------ccCCCHHHHHHHHHHHHHHHHHHh---hCCeecccCccceEEEecCccccCCcee
Confidence            9999999999999999422      226889999999999999999999   89999999999999999887       7


Q ss_pred             eEEeecccccccCCCCccchhhhhcccccccccccC--------CC-----CeE--EEc-cchhhhhhccchhhhccccc
Q 044211          181 AKLFDFSFSISIPEGETHISELLSGLRAFDLARLNE--------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLI  244 (292)
Q Consensus       181 ~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~--------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~  244 (292)
                      +||+|||++......     ....++..|.+|++..        ++     |++  +|+ +...|+.... .........
T Consensus       147 ~kl~Dfg~a~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~-~~~~~~~~~  220 (259)
T cd05037         147 IKLSDPGIPITVLSR-----EERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLS-SSEKERFYQ  220 (259)
T ss_pred             EEeCCCCcccccccc-----cccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCC-chhHHHHHh
Confidence            999999999866431     2234555676666532        22     887  777 5443332221 111111000


Q ss_pred             ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          245 MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      .... .+.  .....+.+++.+||+.+|++|| +.++++.|+
T Consensus       221 ~~~~-~~~--~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         221 DQHR-LPM--PDCAELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             cCCC-CCC--CCchHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            1111 111  1126899999999999999999 999998873

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.98  E-value=9.3e-32  Score=224.93  Aligned_cols=234  Identities=22%  Similarity=0.296  Sum_probs=175.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||++.+...   +...+..||+|.+...... ..+.+..|+..+..++|+||+++++++...+..++++||+++
T Consensus         9 ~g~~g~v~~~~~~~~---~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~~~~   85 (258)
T smart00219        9 EGAFGEVYKGTLKGL---SGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMEG   85 (258)
T ss_pred             cCCCcceEEEEecCC---CCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEeccCC
Confidence            799999999998530   0001388999999765433 567899999999999999999999999998999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++...     ....+++..+..++.|++.||+|||   +.+++|+||+|+||+++.++.++|+|||++.......
T Consensus        86 ~~l~~~~~~~-----~~~~~~~~~~~~~~~ql~~~l~~lh---~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~  157 (258)
T smart00219       86 GDLLDYLRKN-----RPKELSLSDLLSFALQIARGMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD  157 (258)
T ss_pred             CCHHHHHHhh-----hhccCCHHHHHHHHHHHHHHHHHHh---cCCeeecccccceEEEccCCeEEEcccCCceeccccc
Confidence            9999999421     1122899999999999999999999   8999999999999999999999999999998776543


Q ss_pred             ccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      ........++..|.+|+...      ++     |++  +|+ +...|+.. ................. .+...+..+.+
T Consensus       158 ~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  235 (258)
T smart00219      158 YYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPG-MSNEEVLEYLKKGYRLP-KPENCPPEIYK  235 (258)
T ss_pred             ccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCC-CCHHHHHHHHhcCCCCC-CCCcCCHHHHH
Confidence            33222233567787776542      22     877  777 34444332 22222222222222211 12346778999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      ++.+||+.||++|| +.++++.|
T Consensus       236 ~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      236 LMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             HHHHHCcCChhhCcCHHHHHhhC
Confidence            99999999999999 99998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.98  E-value=1.2e-31  Score=225.84  Aligned_cols=225  Identities=18%  Similarity=0.235  Sum_probs=171.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc---------hHHHHHHHHHHHHhcCCCCccceeeeeecCCcce
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR---------TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPI  108 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~---------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~  108 (292)
                      .|+||.||+|....       +++.||+|.+......         ..+.+.+|+.++++++||||+++++++...+..+
T Consensus        10 ~g~~~~v~~a~~~~-------~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (267)
T cd06628          10 SGSFGSVYLGMNAS-------SGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHLN   82 (267)
T ss_pred             cCCCeEEEEEEecC-------CCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccE
Confidence            79999999999864       7889999988643221         2246788999999999999999999999999999


Q ss_pred             EEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccc
Q 044211          109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSF  188 (292)
Q Consensus       109 lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~  188 (292)
                      +++||+++++|.+++.       ....+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||.
T Consensus        83 lv~e~~~~~~L~~~l~-------~~~~l~~~~~~~~~~~l~~~l~~lH---~~~ivH~di~p~nil~~~~~~~~l~dfg~  152 (267)
T cd06628          83 IFLEYVPGGSVAALLN-------NYGAFEETLVRNFVRQILKGLNYLH---NRGIIHRDIKGANILVDNKGGIKISDFGI  152 (267)
T ss_pred             EEEEecCCCCHHHHHH-------hccCccHHHHHHHHHHHHHHHHHHH---hcCcccccCCHHHEEEcCCCCEEecccCC
Confidence            9999999999999993       3356888999999999999999999   89999999999999999999999999999


Q ss_pred             ccccCCCCccc-----hhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCC
Q 044211          189 SISIPEGETHI-----SELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRS  249 (292)
Q Consensus       189 a~~~~~~~~~~-----~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~  249 (292)
                      +.....+....     .....|+..|++|+....      +     |++  +|+ |.. |+........... ......+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~-p~~~~~~~~~~~~-~~~~~~~  230 (267)
T cd06628         153 SKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKH-PFPDCTQLQAIFK-IGENASP  230 (267)
T ss_pred             CcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCC-CCCCccHHHHHHH-HhccCCC
Confidence            98775322111     112346777877765432      2     888  888 543 3332222222111 1111111


Q ss_pred             CCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          250 CSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       250 ~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                       ..+...+..+.+++.+||+.||++|| +.++++
T Consensus       231 -~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         231 -EIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             -cCCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence             11135677899999999999999999 999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.98  E-value=4.7e-32  Score=235.26  Aligned_cols=219  Identities=15%  Similarity=0.204  Sum_probs=167.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||++.+..       +++.||+|.++..   .......+..|..++.++ +||||+++++++...+.+++||||
T Consensus         5 ~G~~g~V~~~~~~~-------~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~   77 (329)
T cd05588           5 RGSYAKVLLVELKK-------TRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEF   77 (329)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeC
Confidence            79999999999875       8899999999753   223345678899999998 799999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++.       ....+++..+..++.|++.||.|||   ..+++||||||+||+++.++.+||+|||++....
T Consensus        78 ~~~g~L~~~~~-------~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~  147 (329)
T cd05588          78 VSGGDLMFHMQ-------RQRKLPEEHARFYSAEISLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGI  147 (329)
T ss_pred             CCCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEECcCccccccc
Confidence            99999998883       3456999999999999999999999   8999999999999999999999999999987532


Q ss_pred             CCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhcc-------ch-hhhcccccccCCCCC
Q 044211          194 EGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEED-------RL-NEIIDPLIMGDRSCS  251 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~  251 (292)
                      ... .......|+..|++|++...      +     |++  +|+ |+. |+....       .. ..............+
T Consensus       148 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~-Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  225 (329)
T cd05588         148 RPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS-PFDIVGMSDNPDQNTEDYLFQVILEKQIRIP  225 (329)
T ss_pred             cCC-CccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCC-CcccccccccccccchHHHHHHHHcCCCCCC
Confidence            221 12234568899988776432      2     888  888 544 332100       00 011111122222222


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-H
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~  277 (292)
                        ...+..+.+++.+||+.||.+|| +
T Consensus       226 --~~~~~~~~~li~~~L~~dP~~R~~~  250 (329)
T cd05588         226 --RSLSVKASSVLKGFLNKDPKERLGC  250 (329)
T ss_pred             --CCCCHHHHHHHHHHhccCHHHcCCC
Confidence              24567899999999999999998 5

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.98  E-value=1.8e-31  Score=224.02  Aligned_cols=230  Identities=16%  Similarity=0.228  Sum_probs=174.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++.+.        .+..+|+|.+.... .....+.+|+.++++++|+||+++++++.. ...++++||++++
T Consensus        16 ~g~~~~vy~~~~~--------~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~~~~~   85 (260)
T cd05073          16 AGQFGEVWMATYN--------KHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMAKG   85 (260)
T ss_pred             CccceEEEEEEec--------CCccEEEEecCCCh-hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEeCCCC
Confidence            8999999999875        67789999887542 234678999999999999999999999887 6789999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||.+..+.....
T Consensus        86 ~L~~~~~~~-----~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  157 (260)
T cd05073          86 SLLDFLKSD-----EGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEY  157 (260)
T ss_pred             cHHHHHHhC-----CccccCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCCcceeeccCCCc
Confidence            999999421     2456788899999999999999999   89999999999999999999999999999987654333


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|.+|++..      ++     |++  +++ +...|+..... ..... .+......+.+...+..+.++
T Consensus       158 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~  235 (260)
T cd05073         158 TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN-PEVIR-ALERGYRMPRPENCPEELYNI  235 (260)
T ss_pred             ccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCH-HHHHH-HHhCCCCCCCcccCCHHHHHH
Confidence            2222334456676666542      22     887  777 45545433221 11111 111222222223566789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +.+||+.+|++|| +.++.+.|+.+
T Consensus       236 i~~~l~~~p~~Rp~~~~l~~~L~~~  260 (260)
T cd05073         236 MMRCWKNRPEERPTFEYIQSVLDDF  260 (260)
T ss_pred             HHHHcccCcccCcCHHHHHHHHhcC
Confidence            9999999999999 99999999753

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.98  E-value=7.6e-32  Score=234.67  Aligned_cols=225  Identities=19%  Similarity=0.229  Sum_probs=184.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc---hHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR---TYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      .|.||.||++....       +|+.+|+|.+......   ....+.+|+.+|+++. ||||+.++++|......++|||+
T Consensus        45 ~G~Fg~v~~~~~~~-------tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lvmEL  117 (382)
T KOG0032|consen   45 RGQFGVVYLCREKS-------TGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLVMEL  117 (382)
T ss_pred             CCCceEEEEEEecC-------CCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEEEEe
Confidence            89999999999986       7999999999765333   3457999999999998 99999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC----CceEEeecccc
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE----NVAKLFDFSFS  189 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~----~~~kl~Dfg~a  189 (292)
                      +.||.|.+.+...        .+++..+..++.|++.|+.|||   ..+++||||||+|+|+...    +.+|++|||+|
T Consensus       118 ~~GGeLfd~i~~~--------~~sE~da~~~~~~il~av~~lH---~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla  186 (382)
T KOG0032|consen  118 CEGGELFDRIVKK--------HYSERDAAGIIRQILEAVKYLH---SLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLA  186 (382)
T ss_pred             cCCchHHHHHHHc--------cCCHHHHHHHHHHHHHHHHHHH---hCCceeccCCHHHeeeccccCCCCcEEEeeCCCc
Confidence            9999999999322        3999999999999999999999   8999999999999999733    47999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCCC-----------CeE-E-EccchhhhhhccchhhhcccccccCC--CCCCch
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV-V-LLDHIKKYFEEDRLNEIIDPLIMGDR--SCSGNQ  254 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi-e-l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  254 (292)
                      .....  .......+||+.|.+|++....           ||+ . |++...||+......... ....+.+  +.+..+
T Consensus       187 ~~~~~--~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~-~i~~~~~~f~~~~w~  263 (382)
T KOG0032|consen  187 KFIKP--GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFL-AILRGDFDFTSEPWD  263 (382)
T ss_pred             eEccC--CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHH-HHHcCCCCCCCCCcc
Confidence            98876  3345668899999999888732           888 4 446666666654333222 2333322  222335


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+....+++..++..||..|+ +.++++.
T Consensus       264 ~is~~akd~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  264 DISESAKDFIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             ccCHHHHHHHHHhcccCcccCCCHHHHhcC
Confidence            7788999999999999999999 9999875

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.98  E-value=2e-31  Score=227.14  Aligned_cols=243  Identities=19%  Similarity=0.217  Sum_probs=175.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.....  ..-..+..||+|.++.... .....+.+|+..++.++|+||+++++++...+..++||||+++
T Consensus        16 ~G~~g~Vy~~~~~~~--~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   93 (288)
T cd05061          16 QGSFGMVYEGNARDI--IKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAH   93 (288)
T ss_pred             CCCCcEEEEEEEecc--CCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEeCCCC
Confidence            899999999976310  0011356899999865432 2334688999999999999999999999988899999999999


Q ss_pred             CChhHHhhhhCCCC---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQ---PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~---~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      |+|.+++.......   .....++...+..++.|++.||.|||   ..+++|+||||+||+++.++.++|+|||++....
T Consensus        94 g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~  170 (288)
T cd05061          94 GDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIY  170 (288)
T ss_pred             CCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCCChheEEEcCCCcEEECcCCcccccc
Confidence            99999996543211   12345677888999999999999999   8999999999999999999999999999987654


Q ss_pred             CCCccc-hhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          194 EGETHI-SELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       194 ~~~~~~-~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ...... .....++..|++|+....      +     |++  ||+ +...|+... ...+..+....+..... +..+++
T Consensus       171 ~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~-~~~~~~~~~~~~~~~~~-~~~~~~  248 (288)
T cd05061         171 ETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGL-SNEQVLKFVMDGGYLDQ-PDNCPE  248 (288)
T ss_pred             ccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHcCCCCCC-CCCCCH
Confidence            322211 122234556776665432      2     888  777 444443321 22222222222211111 124567


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      .+.+++.+||+.||++|| +.++++.|++.
T Consensus       249 ~~~~li~~~l~~~p~~Rps~~~ll~~l~~~  278 (288)
T cd05061         249 RVTDLMRMCWQFNPKMRPTFLEIVNLLKDD  278 (288)
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHHHHHhh
Confidence            899999999999999999 99999999874

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.98  E-value=1.4e-32  Score=227.79  Aligned_cols=230  Identities=20%  Similarity=0.195  Sum_probs=165.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCC-----cceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ-----IPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-----~~~lv~e  112 (292)
                      .|+||.||.|....       +++.||||..-.+....    -+|+++|+.+.|||||++.-+|....     ...+|||
T Consensus        34 ~GsFg~Vyq~~~~e-------~~~~vAIKKv~~d~r~k----nrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVle  102 (364)
T KOG0658|consen   34 SGSFGVVYQAKLRE-------TEEEVAIKKVLQDKRYK----NRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLE  102 (364)
T ss_pred             ecccceEEEEEEcC-------CCceeEEEEecCCCCcC----cHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHH
Confidence            89999999999986       78999999976553322    27999999999999999988886532     2458999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-CCceEEeecccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-ENVAKLFDFSFSIS  191 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~a~~  191 (292)
                      |++. +|.++++...   ..+..++.-.+.-++.|+.+||+|||   ..+|.||||||.|+|+|. .|.+||||||.|+.
T Consensus       103 ymP~-tL~~~~r~~~---~~~~~mp~~~iKLYt~Qlfrgl~yLh---~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~  175 (364)
T KOG0658|consen  103 YMPE-TLYRVIRHYT---RANQRMPLLEIKLYTYQLFRGLAYLH---SHGICHRDIKPQNLLVDPDTGVLKICDFGSAKV  175 (364)
T ss_pred             hchH-HHHHHHHHHh---hcCCCCceeeeHHHHHHHHHHHHHHH---hcCcccCCCChheEEEcCCCCeEEeccCCccee
Confidence            9996 9999996432   24566777788899999999999999   899999999999999995 59999999999998


Q ss_pred             cCCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhcc----------------------
Q 044211          192 IPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEED----------------------  234 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~----------------------  234 (292)
                      +..++.+.  +..-+.-|.+||....+            |||  ||+ |++. |....                      
T Consensus       176 L~~~epni--SYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~pl-FpG~s~~dQL~eIik~lG~Pt~e~I~~  252 (364)
T KOG0658|consen  176 LVKGEPNI--SYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPL-FPGDSSVDQLVEIIKVLGTPTREDIKS  252 (364)
T ss_pred             eccCCCce--eEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcc-cCCCCHHHHHHHHHHHhCCCCHHHHhh
Confidence            86554332  22234444444433322            888  998 7761 11110                      


Q ss_pred             ---chhhhcccccccCCCC-CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH--HHHhh
Q 044211          235 ---RLNEIIDPLIMGDRSC-SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK--TQANV  288 (292)
Q Consensus       235 ---~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~--L~~l~  288 (292)
                         +..+.-.+.+...+.. ......+++..+|+.++++++|.+|. +.|++..  +++++
T Consensus       253 mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr  313 (364)
T KOG0658|consen  253 MNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELR  313 (364)
T ss_pred             cCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhh
Confidence               0001111112211100 01135678999999999999999999 8887754  44444

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.97  E-value=6.1e-32  Score=212.82  Aligned_cols=239  Identities=15%  Similarity=0.152  Sum_probs=183.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecC-----CcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLET-----QIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-----~~~~lv~e  112 (292)
                      +|||+.||.++.-.       ++..||+|++.....+..+..++|++..++++||||++++++...+     ...|+++.
T Consensus        31 eGGfsfv~LV~~~s-------~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~P  103 (302)
T KOG2345|consen   31 EGGFSFVDLVKGLS-------TGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLP  103 (302)
T ss_pred             CCCceeeeeecccC-------cccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEee
Confidence            89999999999655       8999999999888777888999999999999999999998887643     35899999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+..|||.+.+.+..   ..+..+++.+++.|+.+|++||.+||.. ..+..|+||||.|||+++++.++|.|||.+...
T Consensus       104 yy~~Gsl~d~i~~~k---~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a  179 (302)
T KOG2345|consen  104 YYKRGSLLDEIERLK---IKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSATQA  179 (302)
T ss_pred             hhccccHHHHHHHHh---hcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCcccc
Confidence            999999999996553   3567899999999999999999999943 234999999999999999999999999998754


Q ss_pred             CC---CCccch-----hhhhcccccccccccC-CC-------------CeE--EEc-cchhhhhhccchh-hhccccccc
Q 044211          193 PE---GETHIS-----ELLSGLRAFDLARLNE-DD-------------GYV--VLL-DHIKKYFEEDRLN-EIIDPLIMG  246 (292)
Q Consensus       193 ~~---~~~~~~-----~~~~g~~~y~~~~~~~-~~-------------Gvi--el~-~~~~~~~~~~~~~-~~~~~~~~~  246 (292)
                      .-   +.....     ..-..|..|.+||... ++             ||+  .|+ |.. ||....... .+.-....+
T Consensus       180 ~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~s-Pfe~~~~~GgSlaLAv~n~  258 (302)
T KOG2345|consen  180 PIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGES-PFERIYQQGGSLALAVQNA  258 (302)
T ss_pred             ceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCC-cchHHhhcCCeEEEeeecc
Confidence            31   111110     1122477887776543 33             666  444 433 222211111 111233444


Q ss_pred             CCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          247 DRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       247 ~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      ....|.....+..+.+++.+|++.||.+|| +.+++..++.+.
T Consensus       259 q~s~P~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~Li  301 (302)
T KOG2345|consen  259 QISIPNSSRYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDLI  301 (302)
T ss_pred             ccccCCCCCccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhhc
Confidence            555555556788999999999999999999 999999998764

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.97  E-value=6.9e-32  Score=230.95  Aligned_cols=225  Identities=17%  Similarity=0.257  Sum_probs=173.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++....       +++.||+|.++.........+.+|+..++.++||||+++++++...+..++++||++++
T Consensus        31 ~g~~g~v~~~~~~~-------~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~  103 (297)
T cd06659          31 EGSTGIVCIAREKH-------SGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGG  103 (297)
T ss_pred             CCCceeEEEEEEcC-------CCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCC
Confidence            89999999998864       78999999987654445567889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|..++        ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++..+..+..
T Consensus       104 ~L~~~~--------~~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~  172 (297)
T cd06659         104 ALTDIV--------SQTRLNEEQIATVCESVLQALCYLH---SQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP  172 (297)
T ss_pred             CHHHHH--------hhcCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHeEEccCCcEEEeechhHhhcccccc
Confidence            999887        2346889999999999999999999   89999999999999999999999999999876543321


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCC-CCCCchHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR-SCSGNQQQLQAFAH  262 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~  262 (292)
                       ......|+..|++|++...      +     |++  ||+ |+. |+......... ........ ........+..+.+
T Consensus       173 -~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~-p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~  249 (297)
T cd06659         173 -KRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEP-PYFSDSPVQAM-KRLRDSPPPKLKNAHKISPVLRD  249 (297)
T ss_pred             -cccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCC-CCCCCCHHHHH-HHHhccCCCCccccCCCCHHHHH
Confidence             2233557888877776432      2     888  888 654 33222211111 11001111 11111244567899


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++.+||+.+|++|| +.++++.
T Consensus       250 ~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         250 FLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             HHHHHhcCCcccCcCHHHHhhC
Confidence            99999999999999 9999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.97  E-value=1.1e-31  Score=230.36  Aligned_cols=226  Identities=15%  Similarity=0.148  Sum_probs=167.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||+|....       +++.||+|.+..... .....+.+|+.+++.++||||+++++++......++||||+. 
T Consensus        15 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-   86 (303)
T cd07869          15 EGSYATVYKGKSKV-------NGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVH-   86 (303)
T ss_pred             ecCCEEEEEEEECC-------CCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEECCC-
Confidence            89999999999875       889999999875422 233467889999999999999999999999999999999997 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++..      ....+++..+..++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||++.......
T Consensus        87 ~~l~~~~~~------~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~  157 (303)
T cd07869          87 TDLCQYMDK------HPGGLHPENVKLFLFQLLRGLSYIH---QRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPS  157 (303)
T ss_pred             cCHHHHHHh------CCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCC
Confidence            688888832      2356888999999999999999999   8999999999999999999999999999987553222


Q ss_pred             ccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhcccc------------------
Q 044211          197 THISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPL------------------  243 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~------------------  243 (292)
                       .......++..|++||....       +     |++  +|+ |.. |+.........+...                  
T Consensus       158 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
T cd07869         158 -HTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVA-AFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSL  235 (303)
T ss_pred             -ccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCccHHHHHHHHHHHhCCCChhhccchhhc
Confidence             12233567888988885422       1     888  888 543 332221111110000                  


Q ss_pred             --cccC----CCCCC------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          244 --IMGD----RSCSG------NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       244 --~~~~----~~~~~------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                        ....    ..+..      ....++.+.+++.+||+.||.+|| +.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         236 PHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             cccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence              0000    00000      001235688999999999999999 999886

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.97  E-value=2.1e-31  Score=225.57  Aligned_cols=224  Identities=20%  Similarity=0.259  Sum_probs=172.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||+|.+.... ......+.+|+.++++++||||+++++++..++..++|+||+++
T Consensus        14 ~g~~~~vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   86 (277)
T cd06642          14 KGSFGEVYKGIDNR-------TKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGG   86 (277)
T ss_pred             CCCCeeEEEEEEcC-------CCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCC
Confidence            89999999998864       78899999987542 33456789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++.        ...+++..+..++.|++.|+.|||   ..+++|+||+|+||++++++.++|+|||++..+....
T Consensus        87 ~~L~~~~~--------~~~~~~~~~~~~~~~i~~~l~~lH---~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~  155 (277)
T cd06642          87 GSALDLLK--------PGPLEETYIATILREILKGLDYLH---SERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ  155 (277)
T ss_pred             CcHHHHhh--------cCCCCHHHHHHHHHHHHHHHHHHh---cCCeeccCCChheEEEeCCCCEEEccccccccccCcc
Confidence            99999882        346889999999999999999999   8999999999999999999999999999997664322


Q ss_pred             ccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      . ......++..|.+|++...      +     |++  ||+ |+. |+..... ............+ ......+..+.+
T Consensus       156 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~-p~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~  231 (277)
T cd06642         156 I-KRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEP-PNSDLHP-MRVLFLIPKNSPP-TLEGQYSKPFKE  231 (277)
T ss_pred             h-hhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCC-CCcccch-hhHHhhhhcCCCC-CCCcccCHHHHH
Confidence            1 1223456777877765432      2     888  888 654 3221111 1111111111111 111245678999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++.+||+.+|++|| +.++++.
T Consensus       232 li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         232 FVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             HHHHHccCCcccCcCHHHHHHh
Confidence            99999999999999 9999974

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=1.1e-32  Score=242.04  Aligned_cols=227  Identities=16%  Similarity=0.244  Sum_probs=191.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC----CCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCc--ceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE----SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQI--PILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~----~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~--~~lv~  111 (292)
                      +|+|-+||+|.+..       +|-.||.-.++.    .++...++|..|+.+|+.|+||||++++.+|.+...  +-+|+
T Consensus        50 rGafKtVYka~De~-------~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   50 RGAFKTVYKAFDEE-------EGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             cccceeeeeccccc-------cchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            99999999999975       888888766542    234556789999999999999999999999998655  77899


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-CCceEEeeccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-ENVAKLFDFSFSI  190 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~a~  190 (292)
                      |.+.+|+|..++++|+       ......+..|+.||++||.|||+. ..+|+|||||+.||||+. .|.+||+|.|+|.
T Consensus       123 EL~TSGtLr~Y~kk~~-------~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAt  194 (632)
T KOG0584|consen  123 ELFTSGTLREYRKKHR-------RVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLAT  194 (632)
T ss_pred             ecccCCcHHHHHHHhc-------cCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHH
Confidence            9999999999997665       467778999999999999999986 689999999999999995 4899999999998


Q ss_pred             ccCCCCccchhhhhcccccccccccCCC----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNEDD----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~~~----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ......  . ....|||.||+|+.-+..          |+.  ||++...|+.+..+..+++.....|..|..-..-..+
T Consensus       195 l~r~s~--a-ksvIGTPEFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dP  271 (632)
T KOG0584|consen  195 LLRKSH--A-KSVIGTPEFMAPEMYEENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDP  271 (632)
T ss_pred             Hhhccc--c-ceeccCccccChHHHhhhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCH
Confidence            775432  2 337899999999876644          777  9997778999999999999988888766433233467


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+.++|.+|+.. ..+|| +.|++..
T Consensus       272 evr~fIekCl~~-~~~R~sa~eLL~d  296 (632)
T KOG0584|consen  272 EVREFIEKCLAT-KSERLSAKELLKD  296 (632)
T ss_pred             HHHHHHHHHhcC-chhccCHHHHhhC
Confidence            899999999999 99999 9998863

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.97  E-value=1.8e-31  Score=229.09  Aligned_cols=232  Identities=18%  Similarity=0.253  Sum_probs=172.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCe----EEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQER----PVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~----~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||+|.+..       ++.    .||+|.+.... ......+.+|+.+++.++||||++++|++... ..++++|
T Consensus        17 ~G~~g~vy~~~~~~-------~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~v~e   88 (303)
T cd05110          17 SGAFGTVYKGIWVP-------EGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQLVTQ   88 (303)
T ss_pred             cCCCccEEEEEEec-------CCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Cceeeeh
Confidence            89999999998753       444    57999887543 23345688999999999999999999998754 4678999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+++|+|.+++..      ....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++...
T Consensus        89 ~~~~g~l~~~~~~------~~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~  159 (303)
T cd05110          89 LMPHGCLLDYVHE------HKDNIGSQLLLNWCVQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (303)
T ss_pred             hcCCCCHHHHHHh------cccCCCHHHHHHHHHHHHHHHHHHh---hcCeeccccccceeeecCCCceEEccccccccc
Confidence            9999999999832      2346888999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCcc-chhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhc--cchhhhcccccccCCCCCCchH
Q 044211          193 PEGETH-ISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEE--DRLNEIIDPLIMGDRSCSGNQQ  255 (292)
Q Consensus       193 ~~~~~~-~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  255 (292)
                      ...... ......++..|++|+....      +     |++  |++ ....|+...  ......+.   .+. ..+.+..
T Consensus       160 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~---~~~-~~~~~~~  235 (303)
T cd05110         160 EGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLE---KGE-RLPQPPI  235 (303)
T ss_pred             cCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH---CCC-CCCCCCC
Confidence            533221 1122334567777665432      2     887  776 233333221  11222221   111 1111235


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ++..+.+++.+||..+|++|| +.++++.|+++..+
T Consensus       236 ~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~  271 (303)
T cd05110         236 CTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARD  271 (303)
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            567899999999999999999 99999999987643

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.97  E-value=6.9e-32  Score=233.74  Aligned_cols=218  Identities=17%  Similarity=0.239  Sum_probs=166.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCC-CccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHR-CIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~-niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|....       +++.||+|.+...   .....+.+..|..++..+.|+ +|+.+++++...+..++||||
T Consensus        10 ~G~~g~Vy~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~   82 (324)
T cd05587          10 KGSFGKVMLAERKG-------TDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEY   82 (324)
T ss_pred             eccCeEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcC
Confidence            79999999999875       7889999998653   223446688899999999764 688899999988999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++.       ....+++..+..++.|++.||.|||   ..+++||||||+|||++.++.+||+|||++....
T Consensus        83 ~~~g~L~~~~~-------~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~  152 (324)
T cd05587          83 VNGGDLMYHIQ-------QVGKFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENI  152 (324)
T ss_pred             CCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEEcCCCCEEEeecCcceecC
Confidence            99999999983       3456889999999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......|+..|++||+..      ++     |++  +|+ |+. |+... ...+.+..........+  ...+..
T Consensus       153 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~-pf~~~-~~~~~~~~i~~~~~~~~--~~~~~~  227 (324)
T cd05587         153 FGGK-TTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQP-PFDGE-DEDELFQSIMEHNVSYP--KSLSKE  227 (324)
T ss_pred             CCCC-ceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCC-CCCCC-CHHHHHHHHHcCCCCCC--CCCCHH
Confidence            2211 123456889998887543      22     888  888 544 43322 22222222222222222  245668


Q ss_pred             HHHHHhHhcCCCCCCCC-H
Q 044211          260 FAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~  277 (292)
                      +.+++.+||+.||.+|| +
T Consensus       228 ~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         228 AVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             HHHHHHHHhhcCHHHcCCC
Confidence            89999999999999999 6

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.97  E-value=2e-31  Score=227.04  Aligned_cols=242  Identities=22%  Similarity=0.252  Sum_probs=175.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||++.+....+  ..++..||+|.+.... ......+.+|+.++++++||||+++++++......++++||+++
T Consensus        15 ~g~~g~v~~~~~~~~~~--~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (288)
T cd05050          15 QGAFGRVFQARAPGLLP--YEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAY   92 (288)
T ss_pred             ccccccEEEEEEcccCC--CCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccEEEEecCCC
Confidence            89999999998631000  1156789999987543 23346688999999999999999999999998899999999999


Q ss_pred             CChhHHhhhhCCC---------------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCce
Q 044211          117 GSLADRIRIHHTP---------------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVA  181 (292)
Q Consensus       117 gsL~~~l~~~~~~---------------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~  181 (292)
                      |+|.+++......               ......+++..++.++.|++.||.|||   ..+++|+||+|+||+++.++.+
T Consensus        93 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~  169 (288)
T cd05050          93 GDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVV  169 (288)
T ss_pred             CCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCeecccccHhheEecCCCce
Confidence            9999999543210               112345788999999999999999999   8999999999999999999999


Q ss_pred             EEeecccccccCCCCcc-chhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhccccccc
Q 044211          182 KLFDFSFSISIPEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMG  246 (292)
Q Consensus       182 kl~Dfg~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~  246 (292)
                      +|+|||++......... .......+..|++|+...      ++     |++  ||+. ...|+.... ..+.......+
T Consensus       170 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~-~~~~~~~~~~~  248 (288)
T cd05050         170 KIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA-HEEVIYYVRDG  248 (288)
T ss_pred             EECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHhcC
Confidence            99999998765433211 112223345676666432      22     888  8773 333433221 12222221112


Q ss_pred             CCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          247 DRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       247 ~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      ... +.+..++..+.+++.+||+.+|++|| +.|+++.|++
T Consensus       249 ~~~-~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         249 NVL-SCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             CCC-CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence            211 11135667899999999999999999 9999999873

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=9.2e-32  Score=234.14  Aligned_cols=226  Identities=16%  Similarity=0.175  Sum_probs=167.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC-----cceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ-----IPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-----~~~lv  110 (292)
                      +|+||.||+|....       +++.||+|.++..  .......+.+|+.++++++||||+++++++....     ..++|
T Consensus        10 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv   82 (338)
T cd07859          10 KGSYGVVCSAIDTH-------TGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVV   82 (338)
T ss_pred             ecCCeEEEEEEECC-------CCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEE
Confidence            79999999999865       8899999998743  2234457889999999999999999999886432     47999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      |||+. ++|.+++.       ....+++..+..++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||++.
T Consensus        83 ~e~~~-~~L~~~l~-------~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~  151 (338)
T cd07859          83 FELME-SDLHQVIK-------ANDDLTPEHHQFFLYQLLRALKYIH---TANVFHRDLKPKNILANADCKLKICDFGLAR  151 (338)
T ss_pred             EecCC-CCHHHHHH-------hcccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEccCcccc
Confidence            99997 69999883       3456899999999999999999999   8999999999999999999999999999997


Q ss_pred             ccCCCCcc--chhhhhcccccccccccCC--------C-----CeE--EEc-cchhhhhhccchh---------------
Q 044211          191 SIPEGETH--ISELLSGLRAFDLARLNED--------D-----GYV--VLL-DHIKKYFEEDRLN---------------  237 (292)
Q Consensus       191 ~~~~~~~~--~~~~~~g~~~y~~~~~~~~--------~-----Gvi--el~-~~~~~~~~~~~~~---------------  237 (292)
                      ........  ......|+..|++||+...        +     |++  +|+ |+. ++.......               
T Consensus       152 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~-pf~~~~~~~~~~~~~~~~~~~~~~  230 (338)
T cd07859         152 VAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKP-LFPGKNVVHQLDLITDLLGTPSPE  230 (338)
T ss_pred             ccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCC-CCCCCChHHHHHHHHHHhCCCCHH
Confidence            65332211  1233568889988886432        2     888  888 643 332111000               


Q ss_pred             -----------hhcccccccCCCCCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          238 -----------EIIDPLIMGDRSCSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       238 -----------~~~~~~~~~~~~~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                 ..+.. +....+.+.   .+..++.+.+++.+||+.||++|| +.|+++.
T Consensus       231 ~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         231 TISRVRNEKARRYLSS-MRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             HHHHhhhhhHHHHHHh-hcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence                       00000 000011000   012356788999999999999999 9999864

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.7e-32  Score=237.94  Aligned_cols=219  Identities=13%  Similarity=0.104  Sum_probs=166.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|+||.||+|....       +++.||||.+...   .......+.+|+.++..++||||+++++++..++..++||||+
T Consensus        11 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~   83 (364)
T cd05599          11 RGAFGEVRLVQKKD-------TGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIMEYL   83 (364)
T ss_pred             ecCCEEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCC
Confidence            79999999999875       8899999998643   2234456788999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   ..+++||||||+|||++.++.++|+|||++..+..
T Consensus        84 ~~g~L~~~l~-------~~~~l~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  153 (364)
T cd05599          84 PGGDMMTLLM-------KKDTFTEEETRFYIAETILAIDSIH---KLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKK  153 (364)
T ss_pred             CCcHHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEeecccceeccc
Confidence            9999999993       3456899999999999999999999   89999999999999999999999999999875532


Q ss_pred             CCcc-------------------------------------chhhhhcccccccccccCCC-----------CeE--EEc
Q 044211          195 GETH-------------------------------------ISELLSGLRAFDLARLNEDD-----------GYV--VLL  224 (292)
Q Consensus       195 ~~~~-------------------------------------~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~  224 (292)
                      ....                                     ......||+.|++||+....           ||+  ||+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~  233 (364)
T cd05599         154 SHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEML  233 (364)
T ss_pred             cccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhh
Confidence            1100                                     01124589999888864322           888  888


Q ss_pred             -cchhhhhhccchhhhccccccc--CCCCCCchHHHHHHHHHHhHhcCCCCCCCC
Q 044211          225 -DHIKKYFEEDRLNEIIDPLIMG--DRSCSGNQQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       225 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                       |.. |+..... .......+..  ....+.....++.+.+++.+|+. +|.+|+
T Consensus       234 ~G~~-Pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~  285 (364)
T cd05599         234 VGYP-PFCSDNP-QETYRKIINWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRL  285 (364)
T ss_pred             cCCC-CCCCCCH-HHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-CHhhcC
Confidence             544 4433221 1111111111  11111112346688999999997 899998

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.97  E-value=1.4e-31  Score=235.74  Aligned_cols=226  Identities=12%  Similarity=0.141  Sum_probs=173.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++.+..       +++.||+|.+...   .......+.+|..+++.++||||+++++++...+..++||||+
T Consensus        53 ~G~fg~Vy~~~~~~-------~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~  125 (371)
T cd05622          53 RGAFGEVQLVRHKS-------TRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYM  125 (371)
T ss_pred             ecCCeEEEEEEECC-------CCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCC
Confidence            89999999999876       8899999998642   2223345788999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.++++        ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.....
T Consensus       126 ~gg~L~~~~~--------~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~  194 (371)
T cd05622         126 PGGDLVNLMS--------NYDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNK  194 (371)
T ss_pred             CCCcHHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCc
Confidence            9999999993        235788899999999999999999   89999999999999999999999999999987754


Q ss_pred             CCccchhhhhccccccccccc----------CCC-----CeE--EEc-cchhhhhhccchhhhccccccc--CCCCCCch
Q 044211          195 GETHISELLSGLRAFDLARLN----------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMG--DRSCSGNQ  254 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~----------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  254 (292)
                      ..........||+.|++|++.          .++     |++  ||+ |.. |+... ............  ..+.+...
T Consensus       195 ~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~-Pf~~~-~~~~~~~~i~~~~~~~~~~~~~  272 (371)
T cd05622         195 EGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDT-PFYAD-SLVGTYSKIMNHKNSLTFPDDN  272 (371)
T ss_pred             CCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCC-CCCCC-CHHHHHHHHHcCCCcccCCCcC
Confidence            443334456799999888753          233     888  888 543 44332 222222222211  11222223


Q ss_pred             HHHHHHHHHHhHhcCCCCCC--CC-HHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVD--RP-MVDVAKK  283 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~--RP-~~el~~~  283 (292)
                      ..+..+.+++.+|++.+|.+  || +.++++.
T Consensus       273 ~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h  304 (371)
T cd05622         273 DISKEAKNLICAFLTDREVRLGRNGVEEIKRH  304 (371)
T ss_pred             CCCHHHHHHHHHHcCChhhhcCCCCHHHHhcC
Confidence            56778999999999844443  78 8888775

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.97  E-value=1.6e-31  Score=228.28  Aligned_cols=226  Identities=18%  Similarity=0.269  Sum_probs=175.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++....       +++.||+|.+........+.+.+|+.++++++||||+++++.+...+..++|+||++++
T Consensus        29 ~g~~g~v~~~~~~~-------~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~  101 (293)
T cd06647          29 QGASGTVYTAIDVA-------TGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGG  101 (293)
T ss_pred             CCCCeEEEEEEEcC-------CCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecCCCC
Confidence            89999999998754       78899999987655555677899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.        ...+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++........
T Consensus       102 ~L~~~~~--------~~~l~~~~~~~i~~~l~~al~~LH---~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~  170 (293)
T cd06647         102 SLTDVVT--------ETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  170 (293)
T ss_pred             cHHHHHh--------hcCCCHHHHHHHHHHHHHHHHHHH---hCCEeeccCCHHHEEEcCCCCEEEccCcceeccccccc
Confidence            9999993        335788899999999999999999   89999999999999999999999999999876654332


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      . .....++..|.+|+....      +     |++  +++ |+. |+...............+.+....+...+..+.++
T Consensus       171 ~-~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  248 (293)
T cd06647         171 K-RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEP-PYLNENPLRALYLIATNGTPELQNPEKLSAIFRDF  248 (293)
T ss_pred             c-cccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCC-CCCCCChhhheeehhcCCCCCCCCccccCHHHHHH
Confidence            2 223457777877775432      2     877  777 543 44332222221111112222222223456789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+||+.+|++|| +.+++..
T Consensus       249 i~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         249 LNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             HHHHccCChhhCcCHHHHhcC
Confidence            9999999999999 9999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.97  E-value=5.1e-31  Score=223.30  Aligned_cols=224  Identities=19%  Similarity=0.252  Sum_probs=174.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||+|.+..       +++.||+|.+.... ......+.+|+.++++++|+||+++++++..++..++|+||+++
T Consensus        14 ~g~~~~vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   86 (277)
T cd06640          14 KGSFGEVFKGIDNR-------TQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGG   86 (277)
T ss_pred             cCCCeEEEEEEEcc-------CCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCC
Confidence            89999999999864       78999999987542 34456789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.++++        ...+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++.......
T Consensus        87 ~~L~~~i~--------~~~l~~~~~~~~~~~l~~~l~~lh---~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~  155 (277)
T cd06640          87 GSALDLLR--------AGPFDEFQIATMLKEILKGLDYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ  155 (277)
T ss_pred             CcHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCcCCChhhEEEcCCCCEEEcccccceeccCCc
Confidence            99999982        245888999999999999999999   8999999999999999999999999999997765432


Q ss_pred             ccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      . ......++..|.+|++...      +     |++  ||+ |.. |+..... ........... ++..+...+..+.+
T Consensus       156 ~-~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~-p~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~  231 (277)
T cd06640         156 I-KRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEP-PNSDMHP-MRVLFLIPKNN-PPTLTGEFSKPFKE  231 (277)
T ss_pred             c-ccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCC-CCCCcCh-HhHhhhhhcCC-CCCCchhhhHHHHH
Confidence            2 1223456777877775422      2     888  888 543 3322211 11111111111 12222467889999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++.+||+.+|++|| +.+++..
T Consensus       232 li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         232 FIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             HHHHHcccCcccCcCHHHHHhC
Confidence            99999999999999 9999776

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.97  E-value=2.4e-31  Score=222.40  Aligned_cols=225  Identities=20%  Similarity=0.269  Sum_probs=174.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||+|.+..       +++.|++|.+.....  .+.+.+|++.+++++|+||+++++++......++++||+.++
T Consensus        13 ~g~~~~v~~~~~~~-------~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~   83 (256)
T cd06612          13 EGSYGSVYKAIHKE-------TGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAG   83 (256)
T ss_pred             CCCCeEEEEEEEcC-------CCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCCC
Confidence            79999999999974       689999999876532  678999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.      .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++........
T Consensus        84 ~L~~~l~------~~~~~l~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~  154 (256)
T cd06612          84 SVSDIMK------ITNKTLTEEEIAAILYQTLKGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA  154 (256)
T ss_pred             cHHHHHH------hCccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEECCCCcEEEcccccchhcccCcc
Confidence            9999993      23467899999999999999999999   89999999999999999999999999999987654321


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                       ......++..|.+|++..      ++     |++  +|+ |+. |+......................+...+..+.++
T Consensus       155 -~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (256)
T cd06612         155 -KRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKP-PYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDF  232 (256)
T ss_pred             -ccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCC-CCCCcchhhhhhhhccCCCCCCCchhhcCHHHHHH
Confidence             223344677887777532      22     888  888 544 33222211111111111111111123456689999


Q ss_pred             HhHhcCCCCCCCC-HHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+||+.||++|| +.++++
T Consensus       233 i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         233 VKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             HHHHHhcChhhCcCHHHHhc
Confidence            9999999999999 999885

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3e-31  Score=222.56  Aligned_cols=227  Identities=19%  Similarity=0.235  Sum_probs=174.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||+|....       +++.+++|.+........+.+.+|+.++++++||||+++++++...+..+++|||+.++
T Consensus        13 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~   85 (262)
T cd06613          13 SGTYGDVYKARDIA-------TGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGG   85 (262)
T ss_pred             CCCceEEEEeEecC-------CCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCCCCC
Confidence            89999999999865       78899999998765556678999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..      ....+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++........
T Consensus        86 ~l~~~~~~------~~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  156 (262)
T cd06613          86 SLQDIYQV------TRGPLSELQIAYVCRETLKGLAYLH---ETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA  156 (262)
T ss_pred             cHHHHHHh------hccCCCHHHHHHHHHHHHHHHHHHH---hCCceecCCChhhEEECCCCCEEECccccchhhhhhhh
Confidence            99999842      2356889999999999999999999   89999999999999999999999999999876643221


Q ss_pred             cchhhhhcccccccccccC---------CC-----CeE--EEc-cchhhhhhccchhhhcccccc--cCCCCCCchHHHH
Q 044211          198 HISELLSGLRAFDLARLNE---------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIM--GDRSCSGNQQQLQ  258 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  258 (292)
                       ......++..|.+|+...         ++     |++  +|+ |.. |+...............  ...........+.
T Consensus       157 -~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (262)
T cd06613         157 -KRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQP-PMFDLHPMRALFLISKSNFPPPKLKDKEKWSP  234 (262)
T ss_pred             -ccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHhccCCCccccchhhhhH
Confidence             122345666776666532         12     887  888 543 33322211111111111  0111111235567


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+.+++.+||+.+|.+|| +.+++.
T Consensus       235 ~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         235 VFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             HHHHHHHHHcCCChhhCCCHHHHhc
Confidence            899999999999999999 999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-32  Score=241.64  Aligned_cols=229  Identities=14%  Similarity=0.194  Sum_probs=190.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      -|+||.||+|..+.       ++--.|.|.+...+.+..+.++-|+++|..+.||+||++++.|...+.+|++.|||.||
T Consensus        42 DGAFGKVyKA~nke-------t~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GG  114 (1187)
T KOG0579|consen   42 DGAFGKVYKAVNKE-------TKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGG  114 (1187)
T ss_pred             Cccchhhhhhhccc-------chhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCc
Confidence            89999999999874       55667888888877778889999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      .+...+-      .-+..+.+.++.-++.|++.||.|||   +..|||||||+.|||++-+|.++|+|||.+..... ..
T Consensus       115 AVDaiml------EL~r~LtE~QIqvvc~q~ldALn~LH---s~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~-t~  184 (1187)
T KOG0579|consen  115 AVDAIML------ELGRVLTEDQIQVVCYQVLDALNWLH---SQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKS-TR  184 (1187)
T ss_pred             hHhHHHH------HhccccchHHHHHHHHHHHHHHHHHh---hcchhhhhccccceEEEecCcEeeecccccccchh-HH
Confidence            9998883      34678999999999999999999999   99999999999999999999999999999864432 12


Q ss_pred             cchhhhhcccccccccccC-----------CC-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE-----------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .....+.||+.|++|++.-           ++     |++  ||.-..+|..+-....-++.......+....|+.....
T Consensus       185 qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~  264 (1187)
T KOG0579|consen  185 QKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRS  264 (1187)
T ss_pred             hhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCCcccCcchhhhH
Confidence            2346788999998887653           11     777  77733344444444555555555555555567788899


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+++.+||.+||..|| ++++++.
T Consensus       265 F~DfLk~cL~Knp~~Rp~aaqll~H  289 (1187)
T KOG0579|consen  265 FSDFLKRCLVKNPRNRPPAAQLLKH  289 (1187)
T ss_pred             HHHHHHHHHhcCCccCCCHHHHhhC
Confidence            99999999999999999 9999864

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=8.9e-32  Score=229.03  Aligned_cols=231  Identities=20%  Similarity=0.239  Sum_probs=175.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHh--cCCCCccceeeeeecCC----cceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQ--MIHRCIFKLIGCCLETQ----IPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~~~~~----~~~lv~  111 (292)
                      +|.||.||+|++         +++.||||++....   ...|.+|-.+++.  +.|+||+++++.-....    ++++|+
T Consensus       220 ~Grfg~V~KaqL---------~~~~VAVKifp~~~---kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt  287 (534)
T KOG3653|consen  220 RGRFGCVWKAQL---------DNRLVAVKIFPEQE---KQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVT  287 (534)
T ss_pred             cCccceeehhhc---------cCceeEEEecCHHH---HHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEe
Confidence            999999999999         88999999997653   4557788888775  58999999999877655    799999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC------CCCCcccCCCCCCceEecCCCceEEee
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVG------FPRPVIFRDFKLSNILFNEENVAKLFD  185 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~------~~~~i~H~dlk~~nili~~~~~~kl~D  185 (292)
                      +|.+.|||.+++        ....++|....+|+..++.||+|||+.      ...+|+|||||.+||||.+++++-|+|
T Consensus       288 ~fh~kGsL~dyL--------~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaD  359 (534)
T KOG3653|consen  288 EFHPKGSLCDYL--------KANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIAD  359 (534)
T ss_pred             eeccCCcHHHHH--------HhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeec
Confidence            999999999999        356799999999999999999999964      245799999999999999999999999


Q ss_pred             cccccccCCCCcc-chhhhhcccccccccccCCC-----------------CeE--EEccchhhhhh--cc---------
Q 044211          186 FSFSISIPEGETH-ISELLSGLRAFDLARLNEDD-----------------GYV--VLLDHIKKYFE--ED---------  234 (292)
Q Consensus       186 fg~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~~~-----------------Gvi--el~~~~~~~~~--~~---------  234 (292)
                      ||+|..+...... ..-..+||.+||+||+.+.+                 |.|  ||+.+......  ..         
T Consensus       360 FGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~e  439 (534)
T KOG3653|consen  360 FGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAE  439 (534)
T ss_pred             cceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHH
Confidence            9999988643322 22347899999999998766                 777  77755522211  00         


Q ss_pred             -----chhhhccccccc-CCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          235 -----RLNEIIDPLIMG-DRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       235 -----~~~~~~~~~~~~-~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                           .+.+....+... .+|..+    .-.-...+.+.+..||+.||+.|- +.=+.+++.++.
T Consensus       440 vG~hPt~e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~  504 (534)
T KOG3653|consen  440 VGNHPTLEEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELM  504 (534)
T ss_pred             hcCCCCHHHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHh
Confidence                 011111111111 111111    012355688999999999999999 776777776665

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=2.6e-31  Score=225.89  Aligned_cols=227  Identities=16%  Similarity=0.245  Sum_probs=175.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||++.+..       +++.||+|.+... .......+.+|+++++.++||||+++++.+...+.+++|+||+++
T Consensus        15 ~g~~g~v~~~~~~~-------~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   87 (284)
T cd06620          15 AGNGGSVSKVKHIP-------TGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDC   87 (284)
T ss_pred             CCCCeEEEEEEEcC-------CCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCC
Confidence            89999999999865       7899999997654 234456789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++.       ....+++..+..++.+++.||.|||+  ..+++|+||+|+||++++++.++|+|||++.......
T Consensus        88 ~~L~~~~~-------~~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~  158 (284)
T cd06620          88 GSLDRIYK-------KGGPIPVEILGKIAVAVVEGLTYLYN--VHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSI  158 (284)
T ss_pred             CCHHHHHH-------hccCCCHHHHHHHHHHHHHHHHHHHH--hcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhc
Confidence            99999983       33468999999999999999999993  2589999999999999999999999999986553221


Q ss_pred             ccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccc----------hhhhcccccccCCCCCC
Q 044211          197 THISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDR----------LNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  252 (292)
                         .....|+..|.+|+...      ++     |++  +++ |.. |+.....          ....+...+....+...
T Consensus       159 ---~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (284)
T cd06620         159 ---ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKF-PFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLP  234 (284)
T ss_pred             ---cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCC-CCcccchhhhhhhhhhHHHHHHHHHhhccCCCCC
Confidence               12346788887777542      22     877  787 544 3322111          11222222222222222


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      ...++..+.+++.+||+.||++|| +.|+++..
T Consensus       235 ~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~  267 (284)
T cd06620         235 SSDFPEDLRDFVDACLLKDPTERPTPQQLCAMP  267 (284)
T ss_pred             chhcCHHHHHHHHHHhcCCcccCcCHHHHhcCc
Confidence            234677899999999999999999 99999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-32  Score=256.53  Aligned_cols=227  Identities=14%  Similarity=0.162  Sum_probs=186.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|.||.||.|..-.       +|.-.|+|-++-.  .......+.+|..+|..|+|||+|+++|+=......+|.||||+
T Consensus      1245 ~G~fG~VYtavN~~-------tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~ 1317 (1509)
T KOG4645|consen 1245 GGTFGKVYTAVNLD-------TGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCE 1317 (1509)
T ss_pred             CcceeeeEEeecCC-------ccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhc
Confidence            89999999999865       8999999987643  33345678899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.++++       -+...++.....+..|++.|+.|||   +.+|||||+||.||+++.+|.+|++|||.|..+.++
T Consensus      1318 ~GsLa~ll~-------~gri~dE~vt~vyt~qll~gla~LH---~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~ 1387 (1509)
T KOG4645|consen 1318 GGSLASLLE-------HGRIEDEMVTRVYTKQLLEGLAYLH---EHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNN 1387 (1509)
T ss_pred             cCcHHHHHH-------hcchhhhhHHHHHHHHHHHHHHHHH---hcCceecCCCccceeeecCCcEEeecccceeEecCc
Confidence            999999993       3345677777788999999999999   999999999999999999999999999999988766


Q ss_pred             Cccc---hhhhhcccccccccccCCC--------------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchH
Q 044211          196 ETHI---SELLSGLRAFDLARLNEDD--------------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQ  255 (292)
Q Consensus       196 ~~~~---~~~~~g~~~y~~~~~~~~~--------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (292)
                      ....   .....||+.||+|++..++              |||  ||+ |+++..--+.++.-.+.-.....++.|.  .
T Consensus      1388 ~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~P~--~ 1465 (1509)
T KOG4645|consen 1388 AQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQIPE--R 1465 (1509)
T ss_pred             hhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCCCCCch--h
Confidence            3222   3467899999999998766              887  999 7774443333444444444444444444  6


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+.-.+++..||+.||..|+ +.|+++.
T Consensus      1466 ls~~g~dFle~Cl~~dP~~Rw~~~qlle~ 1494 (1509)
T KOG4645|consen 1466 LSSEGRDFLEHCLEQDPKMRWTASQLLEH 1494 (1509)
T ss_pred             hhHhHHHHHHHHHhcCchhhhHHHHHHHh
Confidence            889999999999999999999 8888764

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.97  E-value=3.2e-31  Score=224.83  Aligned_cols=221  Identities=19%  Similarity=0.257  Sum_probs=168.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....       +++.||+|.+... .......+.+|+.++++++||||+++++.+...+..++|+||+++
T Consensus        11 ~g~~~~v~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   83 (279)
T cd06619          11 HGNGGTVYKAYHLL-------TRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDG   83 (279)
T ss_pred             cCCCeEEEEEEEcC-------CCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCC
Confidence            89999999999865       8899999998654 333446789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|..+.           .+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++..+....
T Consensus        84 ~~l~~~~-----------~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~  149 (279)
T cd06619          84 GSLDVYR-----------KIPEHVLGRIAVAVVKGLTYLW---SLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSI  149 (279)
T ss_pred             CChHHhh-----------cCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccccc
Confidence            9986543           3678889999999999999999   8999999999999999999999999999997664322


Q ss_pred             ccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccc------hhhhcccccccCCCCCCchHH
Q 044211          197 THISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDR------LNEIIDPLIMGDRSCSGNQQQ  256 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  256 (292)
                         .....|+..|.+|++...      +     |++  +|+ |+. |+.....      .............+.......
T Consensus       150 ---~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (279)
T cd06619         150 ---AKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRF-PYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQF  225 (279)
T ss_pred             ---ccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCC-CchhhcccccccchHHHHHHHhccCCCCCCCCcC
Confidence               233467888888876432      2     877  887 543 3322110      001111111111111111234


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++.+.+++.+||+.||++|| +.++++.
T Consensus       226 ~~~~~~li~~~l~~~P~~Rp~~~eil~~  253 (279)
T cd06619         226 SEKFVHFITQCMRKQPKERPAPENLMDH  253 (279)
T ss_pred             CHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            56899999999999999999 9998865

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.97  E-value=5.4e-31  Score=221.24  Aligned_cols=227  Identities=19%  Similarity=0.258  Sum_probs=173.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|....       +++.|++|.++....  .....+.+|+.++++++|+||+++++++...+..++|+||++
T Consensus        10 ~G~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (264)
T cd06626          10 GGTFGKVYTAVNLD-------TGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCS   82 (264)
T ss_pred             cCCCcEEEEEEECC-------CCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCC
Confidence            79999999999865       789999999876543  356789999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++.       ....+++..+..++.+++.||.|||   +.+++|+||+|+||++++++.+||+|||++......
T Consensus        83 ~~~L~~~~~-------~~~~~~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~  152 (264)
T cd06626          83 GGTLEELLE-------HGRILDEHVIRVYTLQLLEGLAYLH---SHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNN  152 (264)
T ss_pred             CCcHHHHHh-------hcCCCChHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEcccccccccCCC
Confidence            999999993       3445788899999999999999999   899999999999999999999999999998876543


Q ss_pred             Cccchh---hhhccccccccccc---------CCC-----CeE--EEc-cchhhhhhccchhhhccccccc-CCCCCCch
Q 044211          196 ETHISE---LLSGLRAFDLARLN---------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMG-DRSCSGNQ  254 (292)
Q Consensus       196 ~~~~~~---~~~g~~~y~~~~~~---------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  254 (292)
                      ......   ...++..|.+|++.         .++     |++  +++ |.. |+...............+ .+..+...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~  231 (264)
T cd06626         153 TTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKR-PWSELDNEFQIMFHVGAGHKPPIPDSL  231 (264)
T ss_pred             CCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCC-CccCCcchHHHHHHHhcCCCCCCCccc
Confidence            322211   24567778776642         223     877  888 543 432221111111111111 11122212


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ..+..+.+++.+||+.+|++|| +.+++.
T Consensus       232 ~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         232 QLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             ccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            3477889999999999999999 999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.97  E-value=3.9e-31  Score=221.28  Aligned_cols=228  Identities=18%  Similarity=0.224  Sum_probs=177.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|+||.||.+....       +++.+++|.+...  .......+.+|+.++++++|+||+++++++...+..++++||++
T Consensus        10 ~g~~g~v~~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~   82 (256)
T cd08221          10 KGAFGEATLYRRTE-------DDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYAN   82 (256)
T ss_pred             ccCCceEEEEEEcC-------CCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecC
Confidence            79999999998865       8899999998653  33455678899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++......
T Consensus        83 ~~~L~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~  154 (256)
T cd08221          83 GGTLYDKIVRQ-----KGQLFEEEMVLWYLFQIVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSE  154 (256)
T ss_pred             CCcHHHHHHhc-----cccCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChHhEEEeCCCCEEECcCcceEEcccc
Confidence            99999999421     2456899999999999999999999   899999999999999999999999999999876443


Q ss_pred             CccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      .. ......++..|.+|+...      ++     |++  +|+ |.. ++. .....+.......+..+... ...+..+.
T Consensus       155 ~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  230 (256)
T cd08221         155 YS-MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKR-TFD-ATNPLNLVVKIVQGNYTPVV-SVYSSELI  230 (256)
T ss_pred             cc-cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCC-CCC-CCCHHHHHHHHHcCCCCCCc-cccCHHHH
Confidence            32 223456788887776542      22     887  888 543 322 22222322222333332222 35677899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      +++.+||+.+|++|| +.++++.+
T Consensus       231 ~~i~~~l~~~p~~R~s~~~ll~~~  254 (256)
T cd08221         231 SLVHSLLQQDPEKRPTADEVLDQP  254 (256)
T ss_pred             HHHHHHcccCcccCCCHHHHhhCc
Confidence            999999999999999 99998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.97  E-value=2.7e-31  Score=223.45  Aligned_cols=227  Identities=17%  Similarity=0.259  Sum_probs=170.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC------cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK------PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      .|+||.||+|...        +++.+|+|.+....      ......+.+|++.+++++|+||+++++++...+..++++
T Consensus        10 ~g~~~~v~~~~~~--------~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (265)
T cd06631          10 KGAYGTVYCGLTN--------QGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM   81 (265)
T ss_pred             ccCCeEEEEEEEc--------CCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence            7999999999876        88999999986432      122356889999999999999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+++++|.++++       ....+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++..
T Consensus        82 e~~~~~~L~~~l~-------~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  151 (265)
T cd06631          82 EFVPGGSISSILN-------RFGPLPEPVFCKYTKQILDGVAYLH---NNCVVHRDIKGNNVMLMPNGIIKLIDFGCARR  151 (265)
T ss_pred             ecCCCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHhEEECCCCeEEeccchhhHh
Confidence            9999999999994       2345789999999999999999999   88999999999999999999999999999876


Q ss_pred             cCCCCc-----cchhhhhcccccccccccCC------C-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCc
Q 044211          192 IPEGET-----HISELLSGLRAFDLARLNED------D-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       192 ~~~~~~-----~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (292)
                      ......     .......|+..|.+|++...      +     |++  +|+....|+...................+..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  231 (265)
T cd06631         152 LAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLP  231 (265)
T ss_pred             hhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCCCC
Confidence            532111     11123457778877776432      2     888  88833334433222221111110101111111


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ...+..+.+++.+||+.+|++|| +.+++.
T Consensus       232 ~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         232 DSFSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             CCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            35667899999999999999999 999875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.97  E-value=3.5e-31  Score=227.75  Aligned_cols=226  Identities=17%  Similarity=0.230  Sum_probs=171.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||++.+..       ++..||+|.++.. ......++.+|++++++++||||+++++++..++..++|+||+++
T Consensus        11 ~G~~g~v~~~~~~~-------~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~   83 (308)
T cd06615          11 AGNGGVVTKVLHRP-------SGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHMDG   83 (308)
T ss_pred             CCCCeEEEEEEEcC-------CCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeeccCC
Confidence            89999999999875       7889999998754 233445688999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP-RPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      ++|.++++       ....+++..+..++.|++.||.|||   + .+++|+||+|+||+++.++.++|+|||++......
T Consensus        84 ~~L~~~l~-------~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  153 (308)
T cd06615          84 GSLDQVLK-------KAGRIPENILGKISIAVLRGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  153 (308)
T ss_pred             CcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hhCCEEECCCChHHEEEecCCcEEEccCCCccccccc
Confidence            99999993       2356889999999999999999999   5 58999999999999999999999999998765432


Q ss_pred             CccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhcc--chhhhcc------------------
Q 044211          196 ETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEED--RLNEIID------------------  241 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~--~~~~~~~------------------  241 (292)
                      .   .....++..|.+|+....      +     |++  +|+ |+. |+....  .....+.                  
T Consensus       154 ~---~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (308)
T cd06615         154 M---ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRY-PIPPPDAKELEAMFGRPVSEGEAKESHRPVSGH  229 (308)
T ss_pred             c---cccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCC-CCCCcchhhHHHhhcCccccccccCCcccccCC
Confidence            2   123457778877775432      2     888  888 654 221110  0000000                  


Q ss_pred             ---------------cccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          242 ---------------PLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       242 ---------------~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                                     .......+..+....+..+.+++.+||+.||++|| +.++++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~  288 (308)
T cd06615         230 PPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHP  288 (308)
T ss_pred             CCCccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcCh
Confidence                           00011111111113456799999999999999999 99998763

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.97  E-value=1.4e-31  Score=228.55  Aligned_cols=225  Identities=18%  Similarity=0.264  Sum_probs=173.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++....       ++..||||.+........+.+.+|+..++.++|+||+++++.+...+..++|+||++++
T Consensus        32 ~g~~g~v~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~  104 (292)
T cd06658          32 EGSTGIVCIATEKH-------TGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGG  104 (292)
T ss_pred             CCCCeEEEEEEECC-------CCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCC
Confidence            99999999998865       78999999987655555667899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.        ...+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++....... 
T Consensus       105 ~L~~~~~--------~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~-  172 (292)
T cd06658         105 ALTDIVT--------HTRMNEEQIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEV-  172 (292)
T ss_pred             cHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEccCcchhhccccc-
Confidence            9999882        345889999999999999999999   8899999999999999999999999999987654322 


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhccccccc-CCCCCCchHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMG-DRSCSGNQQQLQAFAH  262 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~  262 (292)
                      .......|+..|++|+....      +     |++  ||+ |.. |+....... .+...... ..........+..+.+
T Consensus       173 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~-p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
T cd06658         173 PKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEP-PYFNEPPLQ-AMRRIRDNLPPRVKDSHKVSSVLRG  250 (292)
T ss_pred             ccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCC-CCCCCCHHH-HHHHHHhcCCCccccccccCHHHHH
Confidence            12233457888888876532      2     888  888 654 333222111 11110000 0111111234567899


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++.+||..||.+|| +.++++.
T Consensus       251 li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         251 FLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             HHHHHccCChhHCcCHHHHhhC
Confidence            99999999999999 9999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.7e-31  Score=227.28  Aligned_cols=222  Identities=15%  Similarity=0.186  Sum_probs=168.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.+....   ......+.+|+.+++.++||||+++++++..++..++||||+
T Consensus        10 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   82 (285)
T cd05605          10 KGGFGEVCACQVRA-------TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLM   82 (285)
T ss_pred             cCCCeEEEEEEEcC-------CCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEecc
Confidence            89999999999865       78999999986532   122345778999999999999999999999989999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+|+|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||++.....
T Consensus        83 ~~~~L~~~~~~~-----~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~  154 (285)
T cd05605          83 NGGDLKFHIYNM-----GNPGFDEERAVFYAAEITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLAVEIPE  154 (285)
T ss_pred             CCCcHHHHHHhc-----CcCCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHEEECCCCCEEEeeCCCceecCC
Confidence            999999888321     2346899999999999999999999   89999999999999999999999999999987643


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccc--hhhhcccccccCCCCCCchHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDR--LNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ...  .....|+..|++|+....      +     |++  +|+ |.. |+.....  ..+.+...+...... .+...+.
T Consensus       155 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  230 (285)
T cd05605         155 GET--IRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKS-PFRQRKEKVKREEVERRVKEDQEE-YSEKFSE  230 (285)
T ss_pred             CCc--cccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCC-CCCCCchhhHHHHHHHHhhhcccc-cCcccCH
Confidence            322  123467888888776432      2     888  888 544 3322111  001111111111111 1125677


Q ss_pred             HHHHHHhHhcCCCCCCCC-HH
Q 044211          259 AFAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~  278 (292)
                      .+.+|+.+||+.||++|| +.
T Consensus       231 ~~~~li~~~l~~~P~~R~~~~  251 (285)
T cd05605         231 AARSICRQLLTKDPGFRLGCR  251 (285)
T ss_pred             HHHHHHHHHccCCHHHhcCCC
Confidence            899999999999999999 54

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=5.2e-31  Score=244.15  Aligned_cols=247  Identities=17%  Similarity=0.246  Sum_probs=189.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|.||.|++|......+........||||+++... ....+.+..|+.+|+.+ .|+||+.++|+|..++..++|.||+.
T Consensus       306 ~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~v~Ey~~  385 (609)
T KOG0200|consen  306 EGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYVIVEYAE  385 (609)
T ss_pred             cccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEEEEEecc
Confidence            99999999998643333222235689999998653 34557799999999999 69999999999999899999999999


Q ss_pred             CCChhHHhhhhC---CCCCCC------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          116 CGSLADRIRIHH---TPQPQH------EPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       116 ~gsL~~~l~~~~---~~~~~~------~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      .|+|..+++..+   ....++      ..++..+.+.++.|||.||.||+   +.+++||||.++|||++++..+||+||
T Consensus       386 ~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~---~~~~vHRDLAaRNVLi~~~~~~kIaDF  462 (609)
T KOG0200|consen  386 HGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLA---SVPCVHRDLAARNVLITKNKVIKIADF  462 (609)
T ss_pred             CCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHh---hCCccchhhhhhhEEecCCCEEEEccc
Confidence            999999997665   111111      35899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCccchhhhhc--cccccccc------ccCCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCC
Q 044211          187 SFSISIPEGETHISELLSG--LRAFDLAR------LNEDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       187 g~a~~~~~~~~~~~~~~~g--~~~y~~~~------~~~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      |+|+..............|  ...|+++|      |+.++     ||+  |++ ....|+.......+++. .+......
T Consensus       463 Glar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~-~l~~G~r~  541 (609)
T KOG0200|consen  463 GLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLE-FLKEGNRM  541 (609)
T ss_pred             cceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHH-HHhcCCCC
Confidence            9999776655444332222  23365554      44455     998  988 44445544222333333 34444444


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      ..|..|.++++++|..||+.+|++|| +.++.+.|+.+.
T Consensus       542 ~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~l  580 (609)
T KOG0200|consen  542 EQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKHL  580 (609)
T ss_pred             CCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHH
Confidence            44468899999999999999999999 999999998853

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-31  Score=235.68  Aligned_cols=230  Identities=20%  Similarity=0.277  Sum_probs=177.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||+|++|.|..  +  ..+.-.||||++...... ..+.|++|+.+|.+|+|+|++++||++.+ ....||+|.++.
T Consensus       120 ~GsFgvV~rg~Wt~--p--sgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~ELapl  194 (1039)
T KOG0199|consen  120 EGSFGVVKRGTWTQ--P--SGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFELAPL  194 (1039)
T ss_pred             CcceeeEeeccccC--C--CCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhhccc
Confidence            99999999999964  1  112346999999876554 66889999999999999999999999987 678899999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |||.+.++.     .....|....+..++.|||.||.||.   .+++|||||..+|+|+...-.+||+|||+.+.+..++
T Consensus       195 GSLldrLrk-----a~~~~llv~~Lcdya~QiA~aM~YLe---skrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ne  266 (1039)
T KOG0199|consen  195 GSLLDRLRK-----AKKAILLVSRLCDYAMQIAKAMQYLE---SKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENE  266 (1039)
T ss_pred             chHHHHHhh-----ccccceeHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhheecccceeeeecccceeccCCCC
Confidence            999999943     24567888899999999999999999   9999999999999999999999999999999887654


Q ss_pred             ccch--hhhhcccccccc------cccCCC-----CeE--EEc-cchhhh--hhccchhhhcccccccCCCCCCchHHHH
Q 044211          197 THIS--ELLSGLRAFDLA------RLNEDD-----GYV--VLL-DHIKKY--FEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       197 ~~~~--~~~~g~~~y~~~------~~~~~~-----Gvi--el~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ....  ....-.+.|-++      .|+.++     ||+  ||+ +..-|+  .....+.+.+|    .....+.+..|+.
T Consensus       267 d~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD----~~erLpRPk~cse  342 (1039)
T KOG0199|consen  267 DMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNID----AGERLPRPKYCSE  342 (1039)
T ss_pred             cceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhcc----ccccCCCCCCChH
Confidence            3321  111123344333      344444     998  999 333222  22223334344    2222333468999


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      ++++++..||..+|.+|| |..|.+.+
T Consensus       343 dIY~imk~cWah~paDRptFsair~~~  369 (1039)
T KOG0199|consen  343 DIYQIMKNCWAHNPADRPTFSAIREDL  369 (1039)
T ss_pred             HHHHHHHHhccCCccccccHHHHHHhH
Confidence            999999999999999999 99997554

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.97  E-value=4.6e-31  Score=233.14  Aligned_cols=219  Identities=14%  Similarity=0.106  Sum_probs=164.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.+...   .......+.+|+.+++.++|+||+++++.+..++.+++||||+
T Consensus        11 ~G~~g~V~~a~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~   83 (376)
T cd05598          11 IGAFGEVCLVRKVD-------TNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYI   83 (376)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCC
Confidence            89999999999865       8899999998643   1223456889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++..+..
T Consensus        84 ~~g~L~~~i~-------~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~  153 (376)
T cd05598          84 PGGDMMSLLI-------RLGIFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRW  153 (376)
T ss_pred             CCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHEEECCCCCEEEEeCCCCccccc
Confidence            9999999993       3456888999999999999999999   89999999999999999999999999999753310


Q ss_pred             CC------------------------------------------ccchhhhhcccccccccccCCC-----------CeE
Q 044211          195 GE------------------------------------------THISELLSGLRAFDLARLNEDD-----------GYV  221 (292)
Q Consensus       195 ~~------------------------------------------~~~~~~~~g~~~y~~~~~~~~~-----------Gvi  221 (292)
                      ..                                          ........||+.|++||+....           ||+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvi  233 (376)
T cd05598         154 THDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVI  233 (376)
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccce
Confidence            00                                          0001134689999888865332           988


Q ss_pred             --EEc-cchhhhhhccchhhhcccccc--cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC
Q 044211          222 --VLL-DHIKKYFEEDRLNEIIDPLIM--GDRSCSGNQQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       222 --el~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                        ||+ |+. |+....... .......  .....+.....++.+.+++.+|+. +|.+|+
T Consensus       234 lyell~G~~-Pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~~-~p~~R~  290 (376)
T cd05598         234 LYEMLVGQP-PFLADTPAE-TQLKVINWETTLHIPSQAKLSREASDLILRLCC-GAEDRL  290 (376)
T ss_pred             eeehhhCCC-CCCCCCHHH-HHHHHhccCccccCCCCCCCCHHHHHHHHHHhc-CHhhcC
Confidence              888 654 433322111 1111111  111111112456678889998774 999999

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.97  E-value=1.9e-31  Score=231.19  Aligned_cols=220  Identities=17%  Similarity=0.209  Sum_probs=167.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|....       +++.||+|.++..   .......+.+|..++.++ +||||+++++++...+.+++||||
T Consensus         5 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~   77 (327)
T cd05617           5 RGSYAKVLLVRLKK-------NDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEY   77 (327)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeC
Confidence            79999999999875       8899999999753   223345688899999988 699999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|..++.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++....
T Consensus        78 ~~~~~L~~~~~-------~~~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~  147 (327)
T cd05617          78 VNGGDLMFHMQ-------RQRKLPEEHARFYAAEICIALNFLH---ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGL  147 (327)
T ss_pred             CCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEeCCCCEEEeccccceecc
Confidence            99999998883       3356899999999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhc-----cch-hhhcccccccCCCCCCc
Q 044211          194 EGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEE-----DRL-NEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~  253 (292)
                      .... ......|++.|++|++...      +     |++  +|+ |+. |+...     ... ..............+  
T Consensus       148 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~p--  223 (327)
T cd05617         148 GPGD-TTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRS-PFDIITDNPDMNTEDYLFQVILEKPIRIP--  223 (327)
T ss_pred             CCCC-ceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCC-CCCccCCCcccccHHHHHHHHHhCCCCCC--
Confidence            2211 1234568899988776432      2     888  888 644 33211     011 111111112211222  


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC-HH
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP-~~  278 (292)
                      ...+..+.+++.+||+.||.+|| +.
T Consensus       224 ~~~~~~~~~li~~~L~~dP~~R~~~~  249 (327)
T cd05617         224 RFLSVKASHVLKGFLNKDPKERLGCQ  249 (327)
T ss_pred             CCCCHHHHHHHHHHhccCHHHcCCCC
Confidence            24566889999999999999998 64

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.97  E-value=2.3e-31  Score=230.36  Aligned_cols=218  Identities=16%  Similarity=0.224  Sum_probs=168.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|....       +++.||+|.++...   ......+..|..++..+ .|++|+++++++...+..++||||
T Consensus        10 ~G~~g~Vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~   82 (323)
T cd05616          10 KGSFGKVMLAERKG-------TDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEY   82 (323)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcC
Confidence            89999999999875       78899999987532   22334567788888877 589999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+.+.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++....
T Consensus        83 ~~~g~L~~~~~-------~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~  152 (323)
T cd05616          83 VNGGDLMYQIQ-------QVGRFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENM  152 (323)
T ss_pred             CCCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEecCCCHHHeEECCCCcEEEccCCCceecC
Confidence            99999999983       3356889999999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......|++.|++||+..      ++     |++  ||+ |+. |+.. .................+  ...+..
T Consensus       153 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~-Pf~~-~~~~~~~~~i~~~~~~~p--~~~s~~  227 (323)
T cd05616         153 WDGV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQA-PFEG-EDEDELFQSIMEHNVAYP--KSMSKE  227 (323)
T ss_pred             CCCC-ccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCC-CCCC-CCHHHHHHHHHhCCCCCC--CcCCHH
Confidence            2221 223456889998887543      23     888  888 544 4332 222333333333332222  255678


Q ss_pred             HHHHHhHhcCCCCCCCC-H
Q 044211          260 FAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~  277 (292)
                      +.+++.+||+.||++|+ .
T Consensus       228 ~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         228 AVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             HHHHHHHHcccCHHhcCCC
Confidence            99999999999999999 6

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.97  E-value=5.8e-31  Score=222.15  Aligned_cols=226  Identities=18%  Similarity=0.224  Sum_probs=170.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecC------CcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLET------QIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~------~~~~lv  110 (292)
                      +|+||.||+|....       +++.||+|.+.... .....+..|+.+++++ +|+||+++++++...      ...+++
T Consensus        16 ~g~~g~vy~~~~~~-------~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv   87 (272)
T cd06637          16 NGTYGQVYKGRHVK-------TGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLV   87 (272)
T ss_pred             ecCCeEEEEEEEcC-------CCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEE
Confidence            89999999999865       88999999987553 3346788999999998 699999999998753      357899


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +||+.+|+|.+++...     ....+++..+..++.|++.||+|||   ..+++|+||+|+||++++++.++|+|||++.
T Consensus        88 ~e~~~~~~L~~~l~~~-----~~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~  159 (272)
T cd06637          88 MEFCGAGSVTDLIKNT-----KGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVSA  159 (272)
T ss_pred             EEcCCCCcHHHHHHhc-----cCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHEEECCCCCEEEccCCCce
Confidence            9999999999999421     2356889999999999999999999   8999999999999999999999999999997


Q ss_pred             ccCCCCccchhhhhcccccccccccC-----------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNE-----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      ...... .......|+..|++|++..           ++     |++  ||+ |+. |+........... ......+..
T Consensus       160 ~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~-p~~~~~~~~~~~~-~~~~~~~~~  236 (272)
T cd06637         160 QLDRTV-GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAP-PLCDMHPMRALFL-IPRNPAPRL  236 (272)
T ss_pred             eccccc-ccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCC-CccccCHHHHHHH-HhcCCCCCC
Confidence            654322 1223456788887777532           22     888  888 654 3322221111111 011111111


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ....++..+.+|+.+||+.||++|| +.++++
T Consensus       237 ~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         237 KSKKWSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             CCCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence            1124566899999999999999999 999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.97  E-value=6.6e-31  Score=219.77  Aligned_cols=223  Identities=19%  Similarity=0.282  Sum_probs=168.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++..         +++.||+|.+....  ....+.+|+.+++.++|||++++++++... ..++++||+.++
T Consensus        16 ~g~~g~v~~~~~---------~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~~~~   83 (254)
T cd05083          16 EGEFGAVLQGEY---------TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELMSKG   83 (254)
T ss_pred             cCCCCceEeccc---------CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECCCCC
Confidence            899999999987         88899999986542  346788999999999999999999998654 579999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...     ....+++..++.++.|++.|+.|||   ..+++|+||+|+||+++.++.++|+|||++....... 
T Consensus        84 ~L~~~l~~~-----~~~~~~~~~~~~~~~qi~~al~~lH---~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~-  154 (254)
T cd05083          84 NLVNFLRTR-----GRALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGV-  154 (254)
T ss_pred             CHHHHHHhc-----CcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCcEEECCCccceeccccC-
Confidence            999999422     2346889999999999999999999   8999999999999999999999999999987543211 


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                         .....+..|.+|++..      ++     |++  +|+ +...|+... ...+.......+.. ...+..++..+.++
T Consensus       155 ---~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~l  229 (254)
T cd05083         155 ---DNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKM-SLKEVKECVEKGYR-MEPPEGCPADVYVL  229 (254)
T ss_pred             ---CCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccC-CHHHHHHHHhCCCC-CCCCCcCCHHHHHH
Confidence               1122344565555432      22     877  777 344443322 22222221111211 11223567789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      +.+||+.+|++|| +.+++..|++
T Consensus       230 i~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         230 MTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             HHHHcCCChhhCcCHHHHHHHHcc
Confidence            9999999999999 9999998863

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.97  E-value=2.9e-31  Score=234.10  Aligned_cols=227  Identities=16%  Similarity=0.184  Sum_probs=168.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC-----cceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ-----IPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-----~~~lv  110 (292)
                      +|+||.||++....       +++.||+|.+...  .....+++.+|+.+++.++|+||+++++++...+     ..++|
T Consensus        10 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv   82 (372)
T cd07853          10 YGAFGVVWSVTDPR-------DGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVV   82 (372)
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEE
Confidence            89999999999765       8999999998653  2234467889999999999999999999998766     68999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +||+. ++|.+.+       .....+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++.
T Consensus        83 ~e~~~-~~l~~~~-------~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~  151 (372)
T cd07853          83 TELMQ-SDLHKII-------VSPQPLSSDHVKVFLYQILRGLKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLAR  151 (372)
T ss_pred             eeccc-cCHHHHH-------hcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHHEEECCCCCEEecccccee
Confidence            99998 5888887       24567899999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchh---hhc------------
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLN---EII------------  240 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~---~~~------------  240 (292)
                      ..............++..|++|+...       ++     |++  ||+ |+. ++.......   .+.            
T Consensus       152 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~~~~~~~~~~i~~~~g~~~~~~~~  230 (372)
T cd07853         152 VEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRI-LFQAQSPIQQLDLITDLLGTPSLEAMR  230 (372)
T ss_pred             ecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHcCCCCHHHHH
Confidence            66543332233345677887777532       22     888  888 543 322111100   000            


Q ss_pred             -------ccccccCCCCCC-------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          241 -------DPLIMGDRSCSG-------NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       241 -------~~~~~~~~~~~~-------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                             ..........+.       ....++.+.+|+.+||+.||++|| +.|++..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         231 SACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             HhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence                   000000000000       012356789999999999999999 9999864

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.97  E-value=1.5e-31  Score=231.44  Aligned_cols=219  Identities=16%  Similarity=0.215  Sum_probs=168.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|....       +++.||+|.+...   .......+..|..++..+. |++|+++++++...+..++||||
T Consensus        10 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey   82 (323)
T cd05615          10 KGSFGKVMLAERKG-------TDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEY   82 (323)
T ss_pred             ecCCeEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEcC
Confidence            89999999999875       8899999998753   2233456778899998886 57788899999988899999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++....
T Consensus        83 ~~~g~L~~~i~-------~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~  152 (323)
T cd05615          83 VNGGDLMYHIQ-------QVGKFKEPQAVFYAAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHM  152 (323)
T ss_pred             CCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeccccccccC
Confidence            99999999983       3356899999999999999999999   8999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......|+..|++||+...      +     |++  +|+ |+. |+... ......+.........+  ...+..
T Consensus       153 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~-pf~~~-~~~~~~~~i~~~~~~~p--~~~~~~  227 (323)
T cd05615         153 VDGV-TTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQP-PFDGE-DEDELFQSIMEHNVSYP--KSLSKE  227 (323)
T ss_pred             CCCc-cccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCC-CCCCC-CHHHHHHHHHhCCCCCC--ccCCHH
Confidence            3221 2234568899988875432      2     888  888 544 43322 22222333233222222  245668


Q ss_pred             HHHHHhHhcCCCCCCCC-HH
Q 044211          260 FAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~  278 (292)
                      +.+++.+||+.||.+|+ ..
T Consensus       228 ~~~li~~~l~~~p~~R~~~~  247 (323)
T cd05615         228 AVSICKGLMTKHPSKRLGCG  247 (323)
T ss_pred             HHHHHHHHcccCHhhCCCCC
Confidence            89999999999999999 53

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.97  E-value=4.7e-31  Score=220.79  Aligned_cols=224  Identities=17%  Similarity=0.222  Sum_probs=171.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-----cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-----PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||+|....       +++.|++|.+....     ....+.+.+|+.++++++|+||+++++++......++++|
T Consensus        10 ~g~~~~vy~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   82 (258)
T cd06632          10 SGSFGSVYEGLNLD-------DGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLE   82 (258)
T ss_pred             ecCCceEEEEEEcC-------CCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEE
Confidence            89999999999865       78999999986432     2345678999999999999999999999999999999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+++++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++...
T Consensus        83 ~~~~~~L~~~~~-------~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~  152 (258)
T cd06632          83 LVPGGSLAKLLK-------KYGSFPEPVIRLYTRQILLGLEYLH---DRNTVHRDIKGANILVDTNGVVKLADFGMAKQV  152 (258)
T ss_pred             ecCCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccceec
Confidence            999999999993       2345889999999999999999999   899999999999999999999999999998776


Q ss_pred             CCCCccchhhhhcccccccccc-------cCCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          193 PEGETHISELLSGLRAFDLARL-------NEDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~-------~~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ....  ......++..|++|+.       +.++     |++  +|+ |.. |+..................+.. +...+
T Consensus       153 ~~~~--~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~-~~~~~  228 (258)
T cd06632         153 VEFS--FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKP-PWSQLEGVAAVFKIGRSKELPPI-PDHLS  228 (258)
T ss_pred             cccc--cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCC-CcccCcHHHHHHHHHhcccCCCc-CCCcC
Confidence            4433  1233456777766653       2223     887  888 543 33222222221111110111111 13566


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+.+++.+||+.+|++|| +.+++.
T Consensus       229 ~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         229 DEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             HHHHHHHHHHhhcCcccCcCHHHHhc
Confidence            7899999999999999999 999875

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.8e-31  Score=232.58  Aligned_cols=226  Identities=14%  Similarity=0.100  Sum_probs=168.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|+||.||++....       +++.||+|.+...   .......+.+|+.+++.++||||+++++++...+..++||||+
T Consensus        11 ~G~~g~Vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~   83 (377)
T cd05629          11 KGAFGEVRLVQKKD-------TGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFL   83 (377)
T ss_pred             ecCCEEEEEEEECC-------CCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCC
Confidence            79999999999875       8899999998542   2233456888999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++..+..
T Consensus        84 ~gg~L~~~l~-------~~~~~~~~~~~~~~~ql~~aL~~LH---~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~  153 (377)
T cd05629          84 PGGDLMTMLI-------KYDTFSEDVTRFYMAECVLAIEAVH---KLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHK  153 (377)
T ss_pred             CCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEEeeccccccccc
Confidence            9999999993       3456889999999999999999999   89999999999999999999999999999864321


Q ss_pred             CCc-------------c---------------------------------chhhhhcccccccccccC------CC----
Q 044211          195 GET-------------H---------------------------------ISELLSGLRAFDLARLNE------DD----  218 (292)
Q Consensus       195 ~~~-------------~---------------------------------~~~~~~g~~~y~~~~~~~------~~----  218 (292)
                      ...             .                                 ......||+.|++||+..      ++    
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS  233 (377)
T cd05629         154 QHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWS  233 (377)
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEe
Confidence            000             0                                 001246899998887643      22    


Q ss_pred             -CeE--EEc-cchhhhhhccchhhhcccccc--cCCCCCCchHHHHHHHHHHhHhcCCCCCC---CC-HHHHHHH
Q 044211          219 -GYV--VLL-DHIKKYFEEDRLNEIIDPLIM--GDRSCSGNQQQLQAFAHLIFECVNESPVD---RP-MVDVAKK  283 (292)
Q Consensus       219 -Gvi--el~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~li~~Cl~~dP~~---RP-~~el~~~  283 (292)
                       ||+  ||+ |.. |+..... ...+.....  .....+.....+..+.+++.+|+. +|.+   || +.+++..
T Consensus       234 lGvil~elltG~~-Pf~~~~~-~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~h  305 (377)
T cd05629         234 LGAIMFECLIGWP-PFCSENS-HETYRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSH  305 (377)
T ss_pred             cchhhhhhhcCCC-CCCCCCH-HHHHHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcC
Confidence             988  888 644 3332221 111111111  111111112356689999999998 6665   57 7777654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.97  E-value=6.6e-31  Score=224.15  Aligned_cols=229  Identities=17%  Similarity=0.165  Sum_probs=171.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecC-----CcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLET-----QIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~-----~~~~lv~  111 (292)
                      +|+||.||++....       +++.+|+|.+.... .....+.+|+.+++++ +|||++++++++...     ...++|+
T Consensus        32 ~g~~~~vy~~~~~~-------~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~lv~  103 (291)
T cd06639          32 KGTYGKVYKVTNKK-------DGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVL  103 (291)
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeEEEE
Confidence            89999999999865       88999999986542 2345678899999999 799999999998753     3579999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+++|+|.++++...   .....+++..++.++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++..
T Consensus       104 ey~~~~sL~~~~~~~~---~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~  177 (291)
T cd06639         104 ELCNGGSVTELVKGLL---ICGQRLDEAMISYILYGALLGLQHLH---NNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQ  177 (291)
T ss_pred             EECCCCcHHHHHHHhh---hcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCEEEeecccchh
Confidence            9999999999884321   23456899999999999999999999   89999999999999999999999999999886


Q ss_pred             cCCCCccchhhhhccccccccccc-----------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCC-CCC
Q 044211          192 IPEGETHISELLSGLRAFDLARLN-----------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR-SCS  251 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~-----------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~  251 (292)
                      ....... .....|+..|++|+..           .++     |++  ||+ |+. |+........... ...... ...
T Consensus       178 ~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~-p~~~~~~~~~~~~-~~~~~~~~~~  254 (291)
T cd06639         178 LTSTRLR-RNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDP-PLFDMHPVKTLFK-IPRNPPPTLL  254 (291)
T ss_pred             ccccccc-ccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCC-CCCCCcHHHHHHH-HhcCCCCCCC
Confidence            6432221 2234577788777752           333     888  888 643 4433222222211 111111 111


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+......+.+++.+||+.+|++|| +.++++.
T Consensus       255 ~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~  287 (291)
T cd06639         255 HPEKWCRSFNHFISQCLIKDFEARPSVTHLLEH  287 (291)
T ss_pred             cccccCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence            1234556899999999999999999 9999863

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.97  E-value=3.9e-31  Score=222.30  Aligned_cols=226  Identities=18%  Similarity=0.241  Sum_probs=175.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||++.+..       +++.|++|.+.... .....++.+|+..+++++||||+++++++...+..++++||+.+
T Consensus        11 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (265)
T cd06605          11 AGNSGVVSKVLHRP-------TGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDG   83 (265)
T ss_pred             CCCCeEEEEEEEcC-------CCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCC
Confidence            79999999999975       78999999987653 33456789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP-RPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      ++|.+++...      ...+++..+..++.|++.||.|||   . .+++|+||+|+||+++.++.++|+|||.+......
T Consensus        84 ~~L~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~lH---~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~  154 (265)
T cd06605          84 GSLDKILKEV------QGRIPERILGKIAVAVLKGLTYLH---EKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNS  154 (265)
T ss_pred             CcHHHHHHHc------cCCCCHHHHHHHHHHHHHHHHHHc---CCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHH
Confidence            9999999422      267899999999999999999999   7 89999999999999999999999999998766432


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhc----cchhhhcccccccCCCCCCchHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEE----DRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ..   ....++..|.+|++....           |++  +|+ |.. |+...    ....+.++.......+.......+
T Consensus       155 ~~---~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (265)
T cd06605         155 LA---KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRF-PYPPENDPPDGIFELLQYIVNEPPPRLPSGKFS  230 (265)
T ss_pred             Hh---hcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCC-CCCccccccccHHHHHHHHhcCCCCCCChhhcC
Confidence            21   125567778777754322           887  777 544 33322    122222222222222222212267


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+.++|.+||..||++|| +.+++..
T Consensus       231 ~~~~~li~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         231 PDFQDFVNLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             HHHHHHHHHHcCCCchhCcCHHHHhhC
Confidence            7899999999999999999 9998753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.97  E-value=7.1e-31  Score=223.39  Aligned_cols=224  Identities=18%  Similarity=0.266  Sum_probs=173.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|++|.||++....       +++.|++|.++.......+.+.+|+.+++.++|+||+++++++...+..++++||+.++
T Consensus        29 ~g~~g~v~~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~  101 (285)
T cd06648          29 EGSTGIVCIATDKS-------TGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGG  101 (285)
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCC
Confidence            89999999999765       78999999987655555667899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.        ...+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++....... 
T Consensus       102 ~L~~~~~--------~~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~-  169 (285)
T cd06648         102 ALTDIVT--------HTRMNEEQIATVCLAVLKALSFLH---AQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEV-  169 (285)
T ss_pred             CHHHHHH--------hCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChhhEEEcCCCcEEEcccccchhhccCC-
Confidence            9999993        246888999999999999999999   8999999999999999999999999999887654322 


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCC-CCchHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC-SGNQQQLQAFAH  262 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~  262 (292)
                      .......|+..|++|+...      ++     |++  +|+ |.. |+...... ..+........+. ..+...+..+.+
T Consensus       170 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~-p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~  247 (285)
T cd06648         170 PRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEP-PYFNEPPL-QAMKRIRDNLPPKLKNLHKVSPRLRS  247 (285)
T ss_pred             cccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCC-CCcCCCHH-HHHHHHHhcCCCCCcccccCCHHHHH
Confidence            1223345777887776532      23     888  888 544 33332211 1111111111111 111235678999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ++.+||+.+|++|| +.++++
T Consensus       248 li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         248 FLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             HHHHHcccChhhCcCHHHHcc
Confidence            99999999999999 999885

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.97  E-value=4.7e-31  Score=224.88  Aligned_cols=228  Identities=14%  Similarity=0.151  Sum_probs=162.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhc---CCCCccceeeeeec-----CCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQM---IHRCIFKLIGCCLE-----TQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l---~h~niv~~~~~~~~-----~~~~  107 (292)
                      +|+||.||+|....      ..++.||+|.++...  ......+.+|+.+++.+   .||||+++++++..     ...+
T Consensus        11 ~G~~g~Vy~~~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~   84 (290)
T cd07862          11 EGAYGKVFKARDLK------NGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKL   84 (290)
T ss_pred             cCCCeEEEEEEEcC------CCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcE
Confidence            89999999998732      046789999986532  22334566777777765   69999999999852     3457


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++|+||+. ++|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||
T Consensus        85 ~lv~e~~~-~~l~~~~~~~-----~~~~~~~~~~~~i~~qi~~aL~~lH---~~~iiH~dlkp~Nil~~~~~~~kl~Dfg  155 (290)
T cd07862          85 TLVFEHVD-QDLTTYLDKV-----PEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFG  155 (290)
T ss_pred             EEEEccCC-CCHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEcCCCCEEEcccc
Confidence            89999998 5999998422     2345889999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccCC------C-----CeE--EEccchhhhhhccch---hhhccc---------
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLLDHIKKYFEEDRL---NEIIDP---------  242 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~~~~~~~~~~~~---~~~~~~---------  242 (292)
                      ++......  .......|+..|++||....      +     |++  ||++..+++......   ..+++.         
T Consensus       156 ~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~  233 (290)
T cd07862         156 LARIYSFQ--MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDW  233 (290)
T ss_pred             ceEeccCC--cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhc
Confidence            99766433  22234567888988875432      2     888  888434333322111   111100         


Q ss_pred             ---------ccccCCCCCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 ---------LIMGDRSCSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 ---------~~~~~~~~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                               ........+.   ..+.+..+.+++.+||+.||++|| +.|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         234 PRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             hhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence                     0000000000   013456788999999999999999 999885

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.97  E-value=3.4e-31  Score=232.85  Aligned_cols=227  Identities=12%  Similarity=0.108  Sum_probs=167.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||+||++....       +++.||+|++...   .......+.+|+.++..++|+||+++++.+.....+++||||+
T Consensus        11 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~   83 (363)
T cd05628          11 RGAFGEVRLVQKKD-------TGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFL   83 (363)
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCC
Confidence            89999999999865       7899999998653   2233456788999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++..+..
T Consensus        84 ~gg~L~~~l~-------~~~~l~~~~~~~~~~qi~~aL~~lH---~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~  153 (363)
T cd05628          84 PGGDMMTLLM-------KKDTLTEEETQFYIAETVLAIDSIH---QLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKK  153 (363)
T ss_pred             CCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCCEEEeeccCcccccc
Confidence            9999999993       3456899999999999999999999   89999999999999999999999999999875432


Q ss_pred             CCc----------------------------------cchhhhhcccccccccccCC------C-----CeE--EEc-cc
Q 044211          195 GET----------------------------------HISELLSGLRAFDLARLNED------D-----GYV--VLL-DH  226 (292)
Q Consensus       195 ~~~----------------------------------~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~  226 (292)
                      ...                                  .......||+.|++||+...      +     ||+  ||+ |+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~  233 (363)
T cd05628         154 AHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGY  233 (363)
T ss_pred             cccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCC
Confidence            110                                  00123468999988886432      2     888  888 65


Q ss_pred             hhhhhhccchhhhcccccc--cCCCCCCchHHHHHHHHHHhHhc--CCCCCCCC-HHHHHHH
Q 044211          227 IKKYFEEDRLNEIIDPLIM--GDRSCSGNQQQLQAFAHLIFECV--NESPVDRP-MVDVAKK  283 (292)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~li~~Cl--~~dP~~RP-~~el~~~  283 (292)
                      . |+.... ....+.....  .....+......+.+.+++.+++  ..++..|| +.||++.
T Consensus       234 ~-Pf~~~~-~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~~~~~r~~r~~~~ei~~h  293 (363)
T cd05628         234 P-PFCSET-PQETYKKVMNWKETLIFPPEVPISEKAKDLILRFCCEWEHRIGAPGVEEIKTN  293 (363)
T ss_pred             C-CCCCCC-HHHHHHHHHcCcCcccCCCcCCCCHHHHHHHHHHcCChhhcCCCCCHHHHhCC
Confidence            4 443222 2222222111  11111111123456777777733  33445679 9998875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.2e-30  Score=220.58  Aligned_cols=225  Identities=20%  Similarity=0.234  Sum_probs=174.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||+|....       +++.||+|.+.... ......+.+|+.+++.++|+||+++++++......++|+||+.+
T Consensus        11 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~   83 (274)
T cd06609          11 KGSFGEVYKAIDKR-------TNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGG   83 (274)
T ss_pred             CCCCeEEEEEEECC-------CCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCC
Confidence            79999999999875       88999999987542 34456788999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++.        ...+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++.......
T Consensus        84 ~~L~~~~~--------~~~~~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~  152 (274)
T cd06609          84 GSCLDLLK--------PGKLDETYIAFILREVLLGLEYLH---EEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTM  152 (274)
T ss_pred             CcHHHHHh--------hcCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEcccccceeecccc
Confidence            99999992        227899999999999999999999   8999999999999999999999999999998775432


Q ss_pred             ccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                       .......++..|++|++..      ++     |++  +|+ |.. |+.... .............+.......+..+.+
T Consensus       153 -~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~-p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (274)
T cd06609         153 -SKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEP-PLSDLH-PMRVLFLIPKNNPPSLEGNKFSKPFKD  229 (274)
T ss_pred             -cccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCC-CcccCc-hHHHHHHhhhcCCCCCcccccCHHHHH
Confidence             2223345677787777543      23     888  888 543 332221 111111111222222111125678999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++.+||..+|++|| +.++++.
T Consensus       230 ~l~~~l~~~p~~Rpt~~~il~~  251 (274)
T cd06609         230 FVSLCLNKDPKERPSAKELLKH  251 (274)
T ss_pred             HHHHHhhCChhhCcCHHHHhhC
Confidence            99999999999999 9999764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=7e-31  Score=223.40  Aligned_cols=228  Identities=16%  Similarity=0.231  Sum_probs=173.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||++.+..       +++.||+|.+... .......+.+|+.++++++|+||+++++.+...+..++|+||+++
T Consensus        11 ~g~~g~v~~~~~~~-------~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (286)
T cd06622          11 KGNYGSVYKVLHRP-------TGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDA   83 (286)
T ss_pred             ccCCeEEEEEEEcC-------CCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecCC
Confidence            89999999999875       8899999998654 233346789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|..++...    .....+++..+..++.+++.||.|||+  +.+++|+||+|+||+++.++.++|+|||++..+....
T Consensus        84 ~~l~~~~~~~----~~~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  157 (286)
T cd06622          84 GSLDKLYAGG----VATEGIPEDVLRRITYAVVKGLKFLKE--EHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASL  157 (286)
T ss_pred             CCHHHHHHhc----cccCCCCHHHHHHHHHHHHHHHHHHHh--cCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCc
Confidence            9999988321    113478999999999999999999993  3589999999999999999999999999987664322


Q ss_pred             ccchhhhhccccccccccc------------CCC-----CeE--EEc-cchhhhhhcc--chhhhcccccccCCCCCCch
Q 044211          197 THISELLSGLRAFDLARLN------------EDD-----GYV--VLL-DHIKKYFEED--RLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~------------~~~-----Gvi--el~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  254 (292)
                      .   ....++..|.+|+..            .++     |++  +|+ |+. |+....  .....+.....+.++. .+.
T Consensus       158 ~---~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~-~~~  232 (286)
T cd06622         158 A---KTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRY-PYPPETYANIFAQLSAIVDGDPPT-LPS  232 (286)
T ss_pred             c---ccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCC-CCCCcchhhHHHHHHHHhhcCCCC-CCc
Confidence            1   223466778777653            222     887  888 544 332211  1111111112222221 123


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .++..+.+++.+||+.+|++|| +.+++..
T Consensus       233 ~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  262 (286)
T cd06622         233 GYSDDAQDFVAKCLNKIPNRRPTYAQLLEH  262 (286)
T ss_pred             ccCHHHHHHHHHHcccCcccCCCHHHHhcC
Confidence            5778899999999999999999 9999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.97  E-value=6.2e-31  Score=225.86  Aligned_cols=230  Identities=15%  Similarity=0.176  Sum_probs=172.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.|++|.+....   ......+.+|+.+++.++||||+++++.+..++..++|+||+
T Consensus        11 ~g~~~~v~~~~~~~-------~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   83 (305)
T cd05609          11 NGAYGAVYLVRHKE-------TRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYV   83 (305)
T ss_pred             cCCCeeEEEEEECC-------CCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEecC
Confidence            89999999999875       78899999987542   233457889999999999999999999999988999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.++++       ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++.....
T Consensus        84 ~g~~L~~~l~-------~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~  153 (305)
T cd05609          84 EGGDCATLLK-------NIGALPVDMARMYFAETVLALEYLH---NYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLM  153 (305)
T ss_pred             CCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHEEECCCCCEEEeeCCCccccCc
Confidence            9999999993       3346899999999999999999999   89999999999999999999999999999864211


Q ss_pred             CCc--------------cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhccccccc
Q 044211          195 GET--------------HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMG  246 (292)
Q Consensus       195 ~~~--------------~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~  246 (292)
                      ...              .......++..|.+|+....      +     |++  |++ |.. |+... ...+.......+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~-pf~~~-~~~~~~~~~~~~  231 (305)
T cd05609         154 SLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCV-PFFGD-TPEELFGQVISD  231 (305)
T ss_pred             CccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCC-CCCCC-CHHHHHHHHHhc
Confidence            100              00112346677877765432      2     877  877 543 44322 222222322222


Q ss_pred             CCCCCC-chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          247 DRSCSG-NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       247 ~~~~~~-~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      ....+. ....+..+.+++.+||+.||++|| +.++.+.|+.
T Consensus       232 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         232 DIEWPEGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             ccCCCCccccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence            211111 124567899999999999999999 8777666643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.5e-30  Score=220.25  Aligned_cols=225  Identities=18%  Similarity=0.226  Sum_probs=173.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcC---CCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMI---HRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      .|+||.||+|.+..       +++.||+|.++.. ......++.+|+.++++++   |||++++++++......++|+||
T Consensus        11 ~g~~g~v~~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~   83 (277)
T cd06917          11 RGAYGAVYRGKHVP-------TGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEY   83 (277)
T ss_pred             ccCCceEEEEEEcC-------CCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEec
Confidence            89999999999865       8899999998754 3344567889999999996   99999999999998899999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++++|.++++        ...+++..++.++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++....
T Consensus        84 ~~~~~L~~~~~--------~~~l~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~  152 (277)
T cd06917          84 AEGGSVRTLMK--------AGPIAEKYISVIIREVLVALKYIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLN  152 (277)
T ss_pred             CCCCcHHHHHH--------ccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHHEEEcCCCCEEEccCCceeecC
Confidence            99999999982        236889999999999999999999   8999999999999999999999999999998775


Q ss_pred             CCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      .+... .....|+..|.+|+...       ++     |++  +|+ |.. |+..... ...........++.......+.
T Consensus       153 ~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~-p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  229 (277)
T cd06917         153 QNSSK-RSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNP-PYSDVDA-FRAMMLIPKSKPPRLEDNGYSK  229 (277)
T ss_pred             CCccc-cccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCC-CCCCCCh-hhhhhccccCCCCCCCcccCCH
Confidence            44322 23345777887777532       22     888  888 543 3322221 1111111111111111123567


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+.+++.+||+.||++|| +.+++..
T Consensus       230 ~~~~~i~~~l~~~p~~R~~~~~il~~  255 (277)
T cd06917         230 LLREFVAACLDEEPKERLSAEELLKS  255 (277)
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHhhC
Confidence            899999999999999999 9998764

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.97  E-value=9.2e-31  Score=219.00  Aligned_cols=227  Identities=17%  Similarity=0.209  Sum_probs=176.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||.+....       +++.||+|.+...  .......+.+|+..+++++||||+++++++...+..++|+||+.
T Consensus        10 ~g~~g~~~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd08218          10 EGSFGKAILVKSKE-------DGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCE   82 (256)
T ss_pred             cCCceEEEEEEEcC-------CCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCC
Confidence            79999999999875       8899999998643  23344678999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++..     .....+++..++.++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++......
T Consensus        83 ~~~l~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~  154 (256)
T cd08218          83 GGDLYKKINA-----QRGVLFPEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNST  154 (256)
T ss_pred             CCcHHHHHHh-----ccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcc
Confidence            9999999832     12346789999999999999999999   899999999999999999999999999999766543


Q ss_pred             CccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      ... .....|+..|.+|++...      +     |++  +|+ |+. ++.. ....+.....+.+..+... ...+..+.
T Consensus       155 ~~~-~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~-~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~  230 (256)
T cd08218         155 VEL-ARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKH-AFEA-GNMKNLVLKIIRGSYPPVS-SHYSYDLR  230 (256)
T ss_pred             hhh-hhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCC-CccC-CCHHHHHHHHhcCCCCCCc-ccCCHHHH
Confidence            221 223456777877776432      2     888  777 543 3322 2333333333333333222 35677899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +++.+||+.+|++|| +.++++.
T Consensus       231 ~li~~~l~~~p~~Rp~~~~vl~~  253 (256)
T cd08218         231 NLVSQLFKRNPRDRPSVNSILEK  253 (256)
T ss_pred             HHHHHHhhCChhhCcCHHHHhhC
Confidence            999999999999999 9999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.97  E-value=1.2e-30  Score=219.14  Aligned_cols=219  Identities=19%  Similarity=0.222  Sum_probs=168.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|+||.||++....       +++.||+|.+....   ....+.+.+|+.+++.++||||+++++.+..+...++++||+
T Consensus         3 ~g~~~~v~~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   75 (262)
T cd05572           3 VGGFGRVELVKVKS-------KNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYC   75 (262)
T ss_pred             CCCceEEEEEEECC-------CCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecC
Confidence            68999999999964       68999999986532   234467899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.+++.       ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++.....
T Consensus        76 ~~~~L~~~l~-------~~~~l~~~~~~~~~~~i~~~l~~lH---~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~  145 (262)
T cd05572          76 LGGELWTILR-------DRGLFDEYTARFYIACVVLAFEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKS  145 (262)
T ss_pred             CCCcHHHHHh-------hcCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCc
Confidence            9999999993       3345889999999999999999999   89999999999999999999999999999987754


Q ss_pred             CCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhcc-chhhhcccccccCCCCCCchHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEED-RLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ..  ......++..|++|+...      ++     |++  +|+ |.. |+.... ...........+......+...+..
T Consensus       146 ~~--~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
T cd05572         146 GQ--KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRP-PFGEDDEDPMEIYNDILKGNGKLEFPNYIDKA  222 (262)
T ss_pred             cc--ccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCC-CcCCCCCCHHHHHHHHhccCCCCCCCcccCHH
Confidence            32  122345677787776532      22     877  777 544 333222 1122222222111111111244778


Q ss_pred             HHHHHhHhcCCCCCCCC
Q 044211          260 FAHLIFECVNESPVDRP  276 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP  276 (292)
                      +.+++.+||+.+|++||
T Consensus       223 ~~~~i~~~l~~~p~~R~  239 (262)
T cd05572         223 AKDLIKQLLRRNPEERL  239 (262)
T ss_pred             HHHHHHHHccCChhhCc
Confidence            99999999999999999

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.97  E-value=1.9e-30  Score=218.80  Aligned_cols=233  Identities=12%  Similarity=0.218  Sum_probs=173.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC----------CcchHHHHHHHHHHHHh-cCCCCccceeeeeecCCc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES----------KPRTYDCCINNIVYASQ-MIHRCIFKLIGCCLETQI  106 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~----------~~~~~~~~~~e~~~l~~-l~h~niv~~~~~~~~~~~  106 (292)
                      +|+||.||+|.+..      -.++.+|+|.+...          ......++..|+.++.+ ++||||+++++++..++.
T Consensus        10 ~G~~~~v~~~~~~~------~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~   83 (269)
T cd08528          10 SGAFGCVYKVRKKN------NGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLENDR   83 (269)
T ss_pred             CCCCceEEEEEEcC------CCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCCe
Confidence            89999999999851      02578999987532          12233567788888875 699999999999999999


Q ss_pred             ceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          107 PILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       107 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      .++++||+++++|.+++....   .....+++..++.++.|++.||.|||+  ..+++|+||+|+||+++.++.++|+||
T Consensus        84 ~~lv~e~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~l~~lh~--~~~i~H~dl~~~nil~~~~~~~~l~df  158 (269)
T cd08528          84 LYIVMDLIEGAPLGEHFNSLK---EKKQRFTEERIWNIFVQMVLALRYLHK--EKRIVHRDLTPNNIMLGEDDKVTITDF  158 (269)
T ss_pred             EEEEEecCCCCcHHHHHHHHH---hccCCCCHHHHHHHHHHHHHHHHHhcc--CCceeecCCCHHHEEECCCCcEEEecc
Confidence            999999999999999884322   234568999999999999999999993  267999999999999999999999999


Q ss_pred             ccccccCCCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC
Q 044211          187 SFSISIPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       187 g~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (292)
                      |.+.......  ......|+..|.+|+....      +     |++  +|+ |+. |+... ...........+...+..
T Consensus       159 g~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~-p~~~~-~~~~~~~~~~~~~~~~~~  234 (269)
T cd08528         159 GLAKQKQPES--KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQP-PFYST-NMLSLATKIVEAVYEPLP  234 (269)
T ss_pred             cceeeccccc--ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCC-ccccc-CHHHHHHHHhhccCCcCC
Confidence            9998765432  2234557778877765443      2     888  888 643 33222 222222211122211111


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      ....++.+.+++.+||+.||++|| +.|+..+++
T Consensus       235 ~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         235 EGMYSEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             cccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence            124567899999999999999999 999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.97  E-value=2.8e-30  Score=218.10  Aligned_cols=240  Identities=19%  Similarity=0.250  Sum_probs=170.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC------cceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ------IPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~l  109 (292)
                      +|+||.||+|.+..    ...+++.||+|.+...  .....+++.+|+.++++++||||+++++++....      ..++
T Consensus         9 ~g~~g~v~~~~~~~----~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~   84 (273)
T cd05074           9 KGEFGSVREAQLKS----EDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMV   84 (273)
T ss_pred             CCCCCCEEeeEeec----cCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceEE
Confidence            89999999998642    0115689999998654  3334567889999999999999999999886532      2368


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ++||+.+|+|.+++..... ......++...+..++.|++.||+|||   ..+++|+||||+||+++.++.+||+|||++
T Consensus        85 ~~~~~~~~~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~nili~~~~~~kl~dfg~~  160 (273)
T cd05074          85 ILPFMKHGDLHTFLLMSRI-GEEPFTLPLQTLVRFMIDIASGMEYLS---SKNFIHRDLAARNCMLNENMTVCVADFGLS  160 (273)
T ss_pred             EEecCCCCcHHHHHHHhcc-cCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccchhhEEEcCCCCEEECccccc
Confidence            8999999999988732211 122345788999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCcc-chhhhhccccccccccc------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCch
Q 044211          190 ISIPEGETH-ISELLSGLRAFDLARLN------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       190 ~~~~~~~~~-~~~~~~g~~~y~~~~~~------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
                      ......... ......++..|.+++..      .++     |++  +|+ +...++... ...+.......... ...+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~-~~~~~~~~~~~~~~-~~~~~  238 (273)
T cd05074         161 KKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGV-ENSEIYNYLIKGNR-LKQPP  238 (273)
T ss_pred             ccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCC-CHHHHHHHHHcCCc-CCCCC
Confidence            866433211 11122334456555542      222     888  877 344443222 11221111111111 11112


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      ..+..+.+++.+||+.+|++|| +.++++.|+++
T Consensus       239 ~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         239 DCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            5667899999999999999999 99999999876

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.97  E-value=5.3e-31  Score=233.21  Aligned_cols=219  Identities=14%  Similarity=0.133  Sum_probs=163.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.+....   ......+.+|+.+++.++|+||+++++.+..++..++||||+
T Consensus        11 ~G~~g~Vy~a~~~~-------~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E~~   83 (382)
T cd05625          11 IGAFGEVCLARKVD-------TKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYI   83 (382)
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEeCC
Confidence            89999999999865       88999999986532   233457889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++..+..
T Consensus        84 ~gg~L~~~l~-------~~~~~~e~~~~~~~~qi~~al~~lH---~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~  153 (382)
T cd05625          84 PGGDMMSLLI-------RMGIFPEDLARFYIAELTCAVESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRW  153 (382)
T ss_pred             CCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEeECCCCccccc
Confidence            9999999993       2346888999999999999999999   89999999999999999999999999999753310


Q ss_pred             CC----------------------------------------------ccchhhhhcccccccccccCCC----------
Q 044211          195 GE----------------------------------------------THISELLSGLRAFDLARLNEDD----------  218 (292)
Q Consensus       195 ~~----------------------------------------------~~~~~~~~g~~~y~~~~~~~~~----------  218 (292)
                      ..                                              ........||+.|++||+....          
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwS  233 (382)
T cd05625         154 THDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWS  233 (382)
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEe
Confidence            00                                              0001234689999888865432          


Q ss_pred             -CeE--EEc-cchhhhhhccchhhhcccccc--cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC
Q 044211          219 -GYV--VLL-DHIKKYFEEDRLNEIIDPLIM--GDRSCSGNQQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       219 -Gvi--el~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                       ||+  ||+ |+. |+........ ......  .....+.....++...+++.+++. +|.+|+
T Consensus       234 lGvil~elltG~~-Pf~~~~~~~~-~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~-~p~~R~  294 (382)
T cd05625         234 VGVILYEMLVGQP-PFLAQTPLET-QMKVINWQTSLHIPPQAKLSPEASDLIIKLCR-GPEDRL  294 (382)
T ss_pred             chHHHHHHHhCCC-CCCCCCHHHH-HHHHHccCCCcCCCCcccCCHHHHHHHHHHcc-CHhHcC
Confidence             888  888 544 4433222111 111111  111111112456678888888764 899997

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.4e-30  Score=226.10  Aligned_cols=228  Identities=15%  Similarity=0.132  Sum_probs=170.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.++..   .......+.+|..++..++|+||+++++++...+..++||||+
T Consensus        11 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   83 (331)
T cd05597          11 RGAFGEVAVVKMKN-------TGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMDYY   83 (331)
T ss_pred             ecCCeEEEEEEECC-------CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEecC
Confidence            89999999999875       7899999998642   2233456888999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+|+|.+++.+      ....+++..+..++.|++.||.|||   ..+++||||||+|||++.++.+||+|||++..+..
T Consensus        84 ~g~~L~~~l~~------~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  154 (331)
T cd05597          84 VGGDLLTLLSK------FEDRLPEDMARFYLAEMVLAIDSVH---QLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLA  154 (331)
T ss_pred             CCCcHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEECCCCHHHEEECCCCCEEEEECCceeecCC
Confidence            99999999942      2456889999999999999999999   89999999999999999999999999999977654


Q ss_pred             CCccchhhhhcccccccccccC-----------CC-----CeE--EEc-cchhhhhhccchhhhcccccccC--CCCC-C
Q 044211          195 GETHISELLSGLRAFDLARLNE-----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD--RSCS-G  252 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~  252 (292)
                      ..........|++.|++|+...           ++     |++  +|+ |+. |+... ...+.........  .+.+ .
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~-Pf~~~-~~~~~~~~i~~~~~~~~~~~~  232 (331)
T cd05597         155 DGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGET-PFYAE-SLVETYGKIMNHKEHFQFPPD  232 (331)
T ss_pred             CCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCC-CCCCC-CHHHHHHHHHcCCCcccCCCc
Confidence            4333333456899998887542           22     888  888 654 33322 1111111111111  1111 1


Q ss_pred             chHHHHHHHHHHhHhcCCCCC--CCC-HHHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPV--DRP-MVDVAKK  283 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~--~RP-~~el~~~  283 (292)
                      ....+..+.+++.+|+..+++  .|| +.+++..
T Consensus       233 ~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         233 VTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             cCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            123567889999997765443  378 8887765

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.97  E-value=3.3e-30  Score=218.32  Aligned_cols=224  Identities=19%  Similarity=0.250  Sum_probs=171.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||+|....       ++..||+|.+.... ......+.+|+..+++++||||+++++++..++..++|+||+++
T Consensus        14 ~G~~~~vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   86 (277)
T cd06641          14 KGSFGEVFKGIDNR-------TQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGG   86 (277)
T ss_pred             ecCCeEEEEEEECC-------CCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCC
Confidence            89999999998764       78999999986432 23446788999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++.        ...+++..+..++.+++.|+.|||   ..+++|+||+|+||+++.++.++|+|||++..+....
T Consensus        87 ~~l~~~i~--------~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~  155 (277)
T cd06641          87 GSALDLLE--------PGPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ  155 (277)
T ss_pred             CcHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHc---cCCeecCCCCHHhEEECCCCCEEEeecccceecccch
Confidence            99999982        346889999999999999999999   8999999999999999999999999999987664322


Q ss_pred             ccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                       .......++..|.+|+....      +     |++  +|+ |.. |+.... .............+ ......+..+.+
T Consensus       156 -~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~-p~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~  231 (277)
T cd06641         156 -IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEP-PHSELH-PMKVLFLIPKNNPP-TLEGNYSKPLKE  231 (277)
T ss_pred             -hhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCC-CCCccc-hHHHHHHHhcCCCC-CCCcccCHHHHH
Confidence             11223456777877765432      2     877  777 543 332211 11111111111111 111355678999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++.+||+.+|++|| +.+++..
T Consensus       232 ~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         232 FVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             HHHHHccCChhhCcCHHHHHhC
Confidence            99999999999999 9999884

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.97  E-value=8.4e-31  Score=247.53  Aligned_cols=231  Identities=18%  Similarity=0.201  Sum_probs=172.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv~e~  113 (292)
                      .|+||+||++.+..       ++..||+|.+...  .......+..|+.+++.|+||||++++++|..  ...+|+||||
T Consensus        23 ~GgFGtVYLAkdk~-------tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyIVMEY   95 (1021)
T PTZ00266         23 NGRFGEVFLVKHKR-------TQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYILMEF   95 (1021)
T ss_pred             cCCCeEEEEEEECC-------CCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEEEEeC
Confidence            89999999999875       8889999998653  23345678999999999999999999998864  3568999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC----CCCcccCCCCCCceEecC------------
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF----PRPVIFRDFKLSNILFNE------------  177 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~----~~~i~H~dlk~~nili~~------------  177 (292)
                      +++|+|.+++....   .....+++..++.|+.||+.||.|||...    ..+|+|+||||+||||+.            
T Consensus        96 ~~gGSL~~lL~k~~---~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~  172 (1021)
T PTZ00266         96 CDAGDLSRNIQKCY---KMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQA  172 (1021)
T ss_pred             CCCCcHHHHHHHHh---hccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccc
Confidence            99999999995332   12357999999999999999999999321    145999999999999964            


Q ss_pred             -----CCceEEeecccccccCCCCccchhhhhcccccccccccC--------CC-----CeE--EEccchhhhhhccchh
Q 044211          178 -----ENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNE--------DD-----GYV--VLLDHIKKYFEEDRLN  237 (292)
Q Consensus       178 -----~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~--------~~-----Gvi--el~~~~~~~~~~~~~~  237 (292)
                           .+.+||+|||++..+.....  .....||+.|++|++..        ++     ||+  +|+....||.......
T Consensus       173 ~n~ng~~iVKLsDFGlAr~l~~~s~--~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~  250 (1021)
T PTZ00266        173 NNLNGRPIAKIGDFGLSKNIGIESM--AHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFS  250 (1021)
T ss_pred             cccCCCCceEEccCCcccccccccc--ccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHH
Confidence                 34599999999986643322  23456899998888542        22     888  8883333444333333


Q ss_pred             hhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          238 EIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .++...... +..+ ....+..+.+||..||+.+|.+|| +.+++.
T Consensus       251 qli~~lk~~-p~lp-i~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        251 QLISELKRG-PDLP-IKGKSKELNILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             HHHHHHhcC-CCCC-cCCCCHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence            333222211 1111 124567899999999999999999 999984

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.97  E-value=4.5e-31  Score=221.54  Aligned_cols=228  Identities=18%  Similarity=0.170  Sum_probs=172.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|+||.||++.+..       +++.|++|.+.....   .....+.+|+.++++++|+||+++++.+......++++||+
T Consensus         3 ~g~~~~vy~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   75 (265)
T cd05579           3 KGAYGRVFLAKKKS-------TGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYL   75 (265)
T ss_pred             CCCceEEEEEEECC-------CCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecC
Confidence            58999999999975       699999999875433   34567889999999999999999999999989999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++.....
T Consensus        76 ~~~~L~~~l~-------~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~  145 (265)
T cd05579          76 PGGDLASLLE-------NVGSLDEDVARIYIAEIVLALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLV  145 (265)
T ss_pred             CCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HcCeecCCCCHHHeEEcCCCCEEEEecccchhccc
Confidence            9999999994       2236899999999999999999999   89999999999999999999999999999876543


Q ss_pred             CCc-------cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCc
Q 044211          195 GET-------HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       195 ~~~-------~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (292)
                      ...       .......++..|.+|+....      +     |++  +++ |.. |+... ...........+..+.+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~-p~~~~-~~~~~~~~~~~~~~~~~~~  223 (265)
T cd05579         146 RRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIP-PFHGE-TPEEIFQNILNGKIEWPED  223 (265)
T ss_pred             CcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCC-CCCCC-CHHHHHHHHhcCCcCCCcc
Confidence            321       12233456677776664322      2     877  777 543 33222 2222222222222222221


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      ...+..+.+++.+||+.+|++|| +.++.+.|
T Consensus       224 ~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l  255 (265)
T cd05579         224 VEVSDEAIDLISKLLVPDPEKRLGAKSIEEIK  255 (265)
T ss_pred             ccCCHHHHHHHHHHhcCCHhhcCCCccHHHHh
Confidence            12377899999999999999999 95555444

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.97  E-value=1.4e-30  Score=224.05  Aligned_cols=227  Identities=16%  Similarity=0.124  Sum_probs=167.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....       +++.||+|.++... ......+.+|+.++++++||||+++++++..++..++||||+.+
T Consensus        16 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   88 (309)
T cd07872          16 EGTYATVFKGRSKL-------TENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDK   88 (309)
T ss_pred             ccCCEEEEEEEecC-------CCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeCCCC
Confidence            89999999999865       78899999987542 22334678899999999999999999999999999999999985


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                       +|.+++.      .....+++..+..++.|++.||.|||   +.+++||||||+||+++.++.+||+|||++.......
T Consensus        89 -~l~~~~~------~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~  158 (309)
T cd07872          89 -DLKQYMD------DCGNIMSMHNVKIFLYQILRGLAYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPT  158 (309)
T ss_pred             -CHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECccccceecCCCc
Confidence             8888883      22345788999999999999999999   8999999999999999999999999999987653322


Q ss_pred             ccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccch---hhhcc----------ccc----
Q 044211          197 THISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRL---NEIID----------PLI----  244 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~---~~~~~----------~~~----  244 (292)
                      . ......++..|.+|+....       +     |++  +|+ |+. ++......   .....          +.+    
T Consensus       159 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
T cd07872         159 K-TYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRP-LFPGSTVEDELHLIFRLLGTPTEETWPGISSND  236 (309)
T ss_pred             c-ccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCCCHHHHhhhcchh
Confidence            1 1223456788888875422       1     888  888 643 32221100   00000          000    


Q ss_pred             ---ccCCCC-------CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          245 ---MGDRSC-------SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       245 ---~~~~~~-------~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                         ....+.       ......+..+.+++.+||+.||.+|| +.|+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  286 (309)
T cd07872         237 EFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKH  286 (309)
T ss_pred             hhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcC
Confidence               000000       00013456789999999999999999 9998873

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.97  E-value=1.8e-30  Score=220.65  Aligned_cols=228  Identities=16%  Similarity=0.197  Sum_probs=172.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|+||.||+|.+..       +++.|++|.+....  ......+.+|+.++++++||||+++++++......++|+||+ 
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~-   81 (286)
T cd07832          10 EGAHGIVFKAKDRE-------TGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM-   81 (286)
T ss_pred             cCCCcEEEEEEECC-------CCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc-
Confidence            79999999999865       88999999987543  334567899999999999999999999999999999999999 


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++..      ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++......
T Consensus        82 ~~~L~~~~~~------~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~  152 (286)
T cd07832          82 PSDLSEVLRD------EERPLPEAQVKSYMRMLLKGVAYMH---ANGIMHRDLKPANLLISADGVLKIADFGLARLFSEE  152 (286)
T ss_pred             CCCHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCC
Confidence            8999999832      2356999999999999999999999   899999999999999999999999999999877544


Q ss_pred             CccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchh---hhcc----------------
Q 044211          196 ETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLN---EIID----------------  241 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~---~~~~----------------  241 (292)
                      .........++..|++|+...       ++     |++  +|+ | .+++.......   ..+.                
T Consensus       153 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (286)
T cd07832         153 EPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNG-SPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSL  231 (286)
T ss_pred             CCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcC-CcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCc
Confidence            322233456788888887642       22     888  888 6 33322111100   0000                


Q ss_pred             ----c-ccccCCCCC---CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 ----P-LIMGDRSCS---GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 ----~-~~~~~~~~~---~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                          . ......+.+   ...+.+..+.+++.+||+.||++|| +.+++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         232 PDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             chhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence                0 000000000   0013457899999999999999999 9998863

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=4.9e-30  Score=251.61  Aligned_cols=224  Identities=25%  Similarity=0.328  Sum_probs=171.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       ++..||+|.++......    ..|+..+++++||||++++|++...+..++||||+++|
T Consensus       700 ~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~----~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g  768 (968)
T PLN00113        700 RGKKGASYKGKSIK-------NGMQFVVKEINDVNSIP----SSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGK  768 (968)
T ss_pred             cCCCeeEEEEEECC-------CCcEEEEEEccCCcccc----HHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCC
Confidence            89999999999854       88999999987543222    24688899999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.++++          .+++..+.+++.|++.||+|||..+..+++|||+||+||+++.++..++. ||.+......  
T Consensus       769 ~L~~~l~----------~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~--  835 (968)
T PLN00113        769 NLSEVLR----------NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTD--  835 (968)
T ss_pred             cHHHHHh----------cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccC--
Confidence            9999992          37889999999999999999997666799999999999999998888775 6655433221  


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhc-----------------cchhhhccccccc
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEE-----------------DRLNEIIDPLIMG  246 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~-----------------~~~~~~~~~~~~~  246 (292)
                         ....++..|++||+..      ++     ||+  ||+ |+.+ +...                 ......+++.+..
T Consensus       836 ---~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (968)
T PLN00113        836 ---TKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSP-ADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRG  911 (968)
T ss_pred             ---CCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCC-CCcccCCCCcHHHHHHHhcCccchhheeCccccC
Confidence               1235678888887543      33     888  998 6543 2111                 0111222333322


Q ss_pred             CCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          247 DRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       247 ~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      ..+.  ..+....+.+++.+||+.||++|| |.|+++.|+++.+.+
T Consensus       912 ~~~~--~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~~  955 (968)
T PLN00113        912 DVSV--NQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRSS  955 (968)
T ss_pred             CCCc--cHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhccc
Confidence            2221  236677889999999999999999 999999999987643

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.97  E-value=1.9e-30  Score=220.83  Aligned_cols=227  Identities=20%  Similarity=0.302  Sum_probs=173.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       +++.|++|.+..... ....+.+|+..++.++|+||+++++.+...+..++++||++++
T Consensus        29 ~g~~~~v~~~~~~~-------~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~  100 (286)
T cd06614          29 EGASGEVYKATDRA-------TGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGG  100 (286)
T ss_pred             CCCCeEEEEEEEcc-------CCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEeccCCC
Confidence            89999999999975       789999999976543 5567889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..+      ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++........
T Consensus       101 ~L~~~l~~~------~~~l~~~~~~~i~~~i~~~L~~lH---~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  171 (286)
T cd06614         101 SLTDIITQN------FVRMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS  171 (286)
T ss_pred             cHHHHHHHh------ccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchh
Confidence            999999422      137899999999999999999999   89999999999999999999999999999876543221


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                       ......++..|.+|+...      ++     |++  +|+ |.. |+.........................++..+.++
T Consensus       172 -~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  249 (286)
T cd06614         172 -KRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEP-PYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDF  249 (286)
T ss_pred             -hhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHhcCCCCCcchhhCCHHHHHH
Confidence             122334667787776532      23     888  888 543 33222211111111111111111112367789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+||+.+|.+|| +.+++..
T Consensus       250 i~~~l~~~p~~Rpt~~~il~~  270 (286)
T cd06614         250 LNKCLVKDPEKRPSAEELLQH  270 (286)
T ss_pred             HHHHhccChhhCcCHHHHhhC
Confidence            9999999999999 9999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.97  E-value=2.7e-30  Score=222.07  Aligned_cols=222  Identities=22%  Similarity=0.313  Sum_probs=170.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.+....   ......+.+|+.+++.++||||+++++++...+..++|+||+
T Consensus        25 ~g~~g~vy~~~~~~-------~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~   97 (307)
T cd06607          25 HGSFGAVYFARDVR-------TNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYC   97 (307)
T ss_pred             CCCCeEEEEEEEcC-------CCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHHhh
Confidence            89999999999865       78999999986432   233457889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      . |++.+++..      ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++.....
T Consensus        98 ~-g~l~~~~~~------~~~~l~~~~~~~~~~ql~~~L~~LH---~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~  167 (307)
T cd06607          98 L-GSASDILEV------HKKPLQEVEIAAICHGALQGLAYLH---SHERIHRDIKAGNILLTEPGTVKLADFGSASLVSP  167 (307)
T ss_pred             C-CCHHHHHHH------cccCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEECCCCCEEEeecCcceecCC
Confidence            8 588887732      2346899999999999999999999   89999999999999999999999999999876543


Q ss_pred             CCccchhhhhcccccccccccC---------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE---------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      .     ....++..|++|+...         ++     |++  ||+ |.. |+.......... .......+......++
T Consensus       168 ~-----~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~-p~~~~~~~~~~~-~~~~~~~~~~~~~~~~  240 (307)
T cd06607         168 A-----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP-PLFNMNAMSALY-HIAQNDSPTLSSNDWS  240 (307)
T ss_pred             C-----CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCC-CCCCccHHHHHH-HHhcCCCCCCCchhhC
Confidence            2     2245677787777531         22     888  888 543 333222111111 1111222222223567


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+.+++.+||+.||++|| +.+++..
T Consensus       241 ~~~~~li~~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         241 DYFRNFVDSCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             HHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            7899999999999999999 9999875

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.97  E-value=2.2e-30  Score=219.91  Aligned_cols=228  Identities=15%  Similarity=0.166  Sum_probs=168.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHH-HHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVY-ASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~-l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||++.+..       +++.||+|.++... .....++..|+.. ++.++||||+++++++..++..++++||++
T Consensus        11 ~g~~g~v~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~   83 (283)
T cd06617          11 RGAYGVVDKMRHVP-------TGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEVMD   83 (283)
T ss_pred             ccCCeEEEEEEEcC-------CCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhhhc
Confidence            89999999999875       89999999987542 2233456666665 556689999999999999999999999998


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR-PVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~-~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                       |+|.+++....   .....+++..+..++.|++.||.|||   +. +++|+||+|+||+++.++.+||+|||++.....
T Consensus        84 -~~l~~~l~~~~---~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~  156 (283)
T cd06617          84 -TSLDKFYKKVY---DKGLTIPEDILGKIAVSIVKALEYLH---SKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVD  156 (283)
T ss_pred             -ccHHHHHHHhc---cCCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeeccccccccc
Confidence             69988885332   13467899999999999999999999   76 999999999999999999999999999986643


Q ss_pred             CCccchhhhhcccccccccccC----------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHH
Q 044211          195 GETHISELLSGLRAFDLARLNE----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQ  256 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (292)
                      ...  .....++..|.+|+...          ++     |++  +|+ |+. |+.......+.+.....+..+..+....
T Consensus       157 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (283)
T cd06617         157 SVA--KTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRF-PYDSWKTPFQQLKQVVEEPSPQLPAEKF  233 (283)
T ss_pred             ccc--cccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCC-CCCccccCHHHHHHHHhcCCCCCCcccc
Confidence            221  12245677787776432          22     887  888 543 3322111111111122222222221245


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +..+.+++.+||+.+|++|| +.+++.
T Consensus       234 ~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         234 SPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            67899999999999999999 999986

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.97  E-value=1.6e-30  Score=228.44  Aligned_cols=220  Identities=12%  Similarity=0.096  Sum_probs=165.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.++..   .......+.+|+.++..++|+||+++++.+...+..++||||+
T Consensus        11 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~   83 (360)
T cd05627          11 RGAFGEVRLVQKKD-------TGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFL   83 (360)
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCC
Confidence            89999999999875       8899999998642   2234467888999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.++|+|||++..+..
T Consensus        84 ~gg~L~~~l~-------~~~~l~~~~~~~~~~qi~~~L~~lH---~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~  153 (360)
T cd05627          84 PGGDMMTLLM-------KKDTLSEEATQFYIAETVLAIDAIH---QLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKK  153 (360)
T ss_pred             CCccHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEeeccCCccccc
Confidence            9999999993       3456899999999999999999999   99999999999999999999999999999875432


Q ss_pred             CCc----------------------------------cchhhhhcccccccccccCC------C-----CeE--EEc-cc
Q 044211          195 GET----------------------------------HISELLSGLRAFDLARLNED------D-----GYV--VLL-DH  226 (292)
Q Consensus       195 ~~~----------------------------------~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~  226 (292)
                      ...                                  .......||+.|++||+...      +     ||+  ||+ |+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~  233 (360)
T cd05627         154 AHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGY  233 (360)
T ss_pred             ccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCC
Confidence            110                                  00123468999988876432      2     988  888 65


Q ss_pred             hhhhhhccchhhhcccccc--cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-H
Q 044211          227 IKKYFEEDRLNEIIDPLIM--GDRSCSGNQQQLQAFAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~  277 (292)
                      . |+..... .........  .....+.....+..+.+++.+++. ||.+|+ .
T Consensus       234 ~-Pf~~~~~-~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~-~p~~R~~~  284 (360)
T cd05627         234 P-PFCSETP-QETYRKVMNWKETLVFPPEVPISEKAKDLILRFCT-DSENRIGS  284 (360)
T ss_pred             C-CCCCCCH-HHHHHHHHcCCCceecCCCCCCCHHHHHHHHHhcc-ChhhcCCC
Confidence            4 4433221 222111111  111111111245678888888774 999998 5

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.97  E-value=2.9e-30  Score=216.76  Aligned_cols=226  Identities=18%  Similarity=0.268  Sum_probs=176.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|++|.||+|....       +++.|++|.+..... .....+.+|+..+++++|+||+++++++...+..++++||+++
T Consensus        11 ~g~~~~v~~~~~~~-------~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (264)
T cd06623          11 QGSSGVVYKVRHKP-------TGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDG   83 (264)
T ss_pred             ecCCeEEEEEEEcC-------CCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEecCC
Confidence            79999999999975       799999999876543 4557799999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP-RPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      ++|.+++.       ....+++..+..++.|++.|+.|||   . .+++|+||+|+||+++.++.++|+|||++......
T Consensus        84 ~~L~~~l~-------~~~~l~~~~~~~~~~~l~~~l~~lh---~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~  153 (264)
T cd06623          84 GSLADLLK-------KVGKIPEPVLAYIARQILKGLDYLH---TKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENT  153 (264)
T ss_pred             CcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHh---ccCCCccCCCCHHHEEECCCCCEEEccCccceecccC
Confidence            99999993       2367899999999999999999999   8 99999999999999999999999999999876543


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc--chhhhcccccccCCCCCCchH-HHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED--RLNEIIDPLIMGDRSCSGNQQ-QLQ  258 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~  258 (292)
                      ... .....++..|.+|+.....           |++  +|+ |.. |+....  ...+..........+... .. .+.
T Consensus       154 ~~~-~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  230 (264)
T cd06623         154 LDQ-CNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKF-PFLPPGQPSFFELMQAICDGPPPSLP-AEEFSP  230 (264)
T ss_pred             CCc-ccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCC-CCccccccCHHHHHHHHhcCCCCCCC-cccCCH
Confidence            322 1234567777776654322           877  788 543 332221  222222222222222111 23 677


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+.+++.+||+.+|++|| +.++++.
T Consensus       231 ~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         231 EFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHHhC
Confidence            899999999999999999 9999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.97  E-value=2e-30  Score=220.19  Aligned_cols=227  Identities=18%  Similarity=0.224  Sum_probs=170.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeec------CCcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLE------TQIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~------~~~~~lv  110 (292)
                      .|+||.||+|.+..       +++.||+|.+.... .....+..|+.+++++ +|+||+++++++..      ....+++
T Consensus        26 ~g~~~~v~~~~~~~-------~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv   97 (282)
T cd06636          26 NGTYGQVYKGRHVK-------TGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLV   97 (282)
T ss_pred             cCCCeEEEEEEEcC-------CCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEE
Confidence            89999999999875       88999999986553 2345688899999998 69999999999863      3467999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      |||+.+|+|.+++...     ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++.
T Consensus        98 ~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dl~~~nili~~~~~~~l~dfg~~~  169 (282)
T cd06636          98 MEFCGAGSVTDLVKNT-----KGNALKEDWIAYICREILRGLAHLH---AHKVIHRDIKGQNVLLTENAEVKLVDFGVSA  169 (282)
T ss_pred             EEeCCCCcHHHHHHHc-----cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCcchh
Confidence            9999999999999432     2345788889999999999999999   8999999999999999999999999999987


Q ss_pred             ccCCCCccchhhhhcccccccccccC-----------CC-----CeE--EEccchhhhhhccchhhhcccccccCCCCCC
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNE-----------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (292)
                      ....... ......|+..|++|+...           ++     |++  +|+....|+........... ......+...
T Consensus       170 ~~~~~~~-~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~-~~~~~~~~~~  247 (282)
T cd06636         170 QLDRTVG-RRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFL-IPRNPPPKLK  247 (282)
T ss_pred             hhhcccc-CCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhh-HhhCCCCCCc
Confidence            6543211 123356788887776531           22     888  88833334433322222211 1111111111


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ...++..+.+++.+||+.||.+|| +.||++
T Consensus       248 ~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         248 SKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             ccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            235677899999999999999999 999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=4e-30  Score=217.02  Aligned_cols=229  Identities=19%  Similarity=0.214  Sum_probs=172.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCC------cceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQ------IPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~------~~~lv  110 (292)
                      +|+||.||+|....       +++.|++|.+..... ..+.+.+|+.+++++ .|+||+++++++....      ..++|
T Consensus        16 ~g~~~~v~~~~~~~-------~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv   87 (275)
T cd06608          16 EGTYGKVYKARHKK-------TGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLV   87 (275)
T ss_pred             CCCCeEEEEEEECC-------CCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEE
Confidence            89999999999865       788999999876533 346789999999999 6999999999997644      37999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +||+++++|.+++....   .....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++.
T Consensus        88 ~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~  161 (275)
T cd06608          88 MELCGGGSVTDLVKGLR---KKGKRLKEEWIAYILRETLRGLAYLH---ENKVIHRDIKGQNILLTKNAEVKLVDFGVSA  161 (275)
T ss_pred             EEcCCCCcHHHHHHHHh---hcCCCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEEccCCeEEECCCccce
Confidence            99999999999984322   12467899999999999999999999   8999999999999999999999999999987


Q ss_pred             ccCCCCccchhhhhccccccccccc-----------CCC-----CeE--EEccchhhhhhccchhhhcccccccCC-CCC
Q 044211          191 SIPEGETHISELLSGLRAFDLARLN-----------EDD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDR-SCS  251 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~-----------~~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  251 (292)
                      ...... .......|+..|++|++.           .++     |++  +|++...|+.......... ....... ...
T Consensus       162 ~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~-~~~~~~~~~~~  239 (275)
T cd06608         162 QLDSTL-GRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALF-KIPRNPPPTLK  239 (275)
T ss_pred             ecccch-hhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHHHH-HhhccCCCCCC
Confidence            654322 222334577778777642           223     888  7883343443322222111 1112111 111


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+...+..+.+++.+||+.||++|| +.++++
T Consensus       240 ~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         240 SPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             chhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            1123567899999999999999999 999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.97  E-value=2.5e-30  Score=216.38  Aligned_cols=227  Identities=15%  Similarity=0.222  Sum_probs=173.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeec-CCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE-TQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~~  114 (292)
                      .|++|.||++....       +++.||+|.+...  .....+.+.+|+.++++++|+|++++++.+.. ...+++++||+
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~   82 (257)
T cd08223          10 KGSYGEVSLVRHRT-------DGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFC   82 (257)
T ss_pred             CCCCeEEEEEEEcC-------CCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEeccc
Confidence            79999999999875       7889999998653  22344668899999999999999999998764 44578999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.++++..     ....+++.++..++.+++.|+.+||   +.+++|+||+|+||+++.++.++|+|||++.....
T Consensus        83 ~~~~l~~~l~~~-----~~~~l~~~~~~~~~~~l~~~l~~lH---~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~  154 (257)
T cd08223          83 EGGDLYHKLKEQ-----KGKLLPENQVVEWFVQIAMALQYLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLEN  154 (257)
T ss_pred             CCCcHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCchhEEEecCCcEEEecccceEEecc
Confidence            999999999421     2456899999999999999999999   89999999999999999999999999999987643


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ... ......++..|++|+.....           |++  +|+ |+. ++... ...........+..+.. +...++.+
T Consensus       155 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~-~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~  230 (257)
T cd08223         155 QCD-MASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKH-AFNAK-DMNSLVYRIIEGKLPPM-PKDYSPEL  230 (257)
T ss_pred             cCC-ccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCC-CCCCC-CHHHHHHHHHhcCCCCC-ccccCHHH
Confidence            322 22344577888888764322           888  888 543 33222 22222222222222111 13567789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+++.+||+.||++|| +.++++.
T Consensus       231 ~~li~~~l~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         231 GELIATMLSKRPEKRPSVKSILRQ  254 (257)
T ss_pred             HHHHHHHhccCcccCCCHHHHhcC
Confidence            9999999999999999 9998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.97  E-value=4.6e-30  Score=215.87  Aligned_cols=230  Identities=20%  Similarity=0.293  Sum_probs=174.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||+||+|....       ++..+++|.+.... ......+.+|+..++.++|+||+++++.+...+..++++|++++
T Consensus        11 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~   83 (267)
T cd06610          11 VGATAVVYAAICLP-------NNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSG   83 (267)
T ss_pred             CCCCeEEEEEEEcC-------CCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCC
Confidence            79999999999865       78899999986532 23567799999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.++++...    ....+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++.......
T Consensus        84 ~~l~~~~~~~~----~~~~~~~~~~~~~~~ql~~al~~lh---~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~  156 (267)
T cd06610          84 GSLLDIMKSSY----PRGGLDEAIIATVLKEVLKGLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGG  156 (267)
T ss_pred             CcHHHHHHHhc----ccCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCc
Confidence            99999994321    1356899999999999999999999   8999999999999999999999999999987765433


Q ss_pred             cc---chhhhhccccccccccc-------CCC-----CeE--EEccchhhhhhccchhhhcccccccCCCCCC----chH
Q 044211          197 TH---ISELLSGLRAFDLARLN-------EDD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSG----NQQ  255 (292)
Q Consensus       197 ~~---~~~~~~g~~~y~~~~~~-------~~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  255 (292)
                      ..   ......|+..|++|+..       .++     |++  +|++...|+....... .+.......++...    ...
T Consensus       157 ~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  235 (267)
T cd06610         157 DRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMK-VLMLTLQNDPPSLETGADYKK  235 (267)
T ss_pred             cccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhh-hHHHHhcCCCCCcCCcccccc
Confidence            22   12334577778766643       222     888  8883333433222211 11111111111111    124


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+..+.+++.+||+.||++|| +.+++.
T Consensus       236 ~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         236 YSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             ccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            567899999999999999999 999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.97  E-value=2.5e-30  Score=218.39  Aligned_cols=228  Identities=14%  Similarity=0.195  Sum_probs=169.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc----------chHHHHHHHHHHHHhcCCCCccceeeeeecCCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP----------RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~----------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~  107 (292)
                      +|+||.||+|....       +++.||+|.++....          ...+.+.+|+..++.++|+|++++++++...+..
T Consensus        11 ~g~~~~vy~~~~~~-------~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   83 (272)
T cd06629          11 KGTYGRVYLALNVT-------TGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEYL   83 (272)
T ss_pred             ccCceEEEEEeecC-------CCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCce
Confidence            89999999998765       789999998753211          1124578899999999999999999999999999


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++|+||+++++|.++++       ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||
T Consensus        84 ~lv~e~~~~~~L~~~l~-------~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~~~nil~~~~~~~~l~d~~  153 (272)
T cd06629          84 SIFLEYVPGGSIGSCLR-------TYGRFEEQLVRFFTEQVLEGLAYLH---SKGILHRDLKADNLLVDADGICKISDFG  153 (272)
T ss_pred             EEEEecCCCCcHHHHHh-------hccCCCHHHHHHHHHHHHHHHHHHh---hCCeeecCCChhhEEEcCCCeEEEeecc
Confidence            99999999999999993       2356888999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCccc-hhhhhccccccccccc--------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCC-
Q 044211          188 FSISIPEGETHI-SELLSGLRAFDLARLN--------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRS-  249 (292)
Q Consensus       188 ~a~~~~~~~~~~-~~~~~g~~~y~~~~~~--------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~-  249 (292)
                      ++.......... .....|+..|.+|+..        .++     |++  +++ |.. |+..........+........ 
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~  232 (272)
T cd06629         154 ISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRR-PWSDEEAIAAMFKLGNKRSAPP  232 (272)
T ss_pred             ccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCC-CCcCcchHHHHHHhhccccCCc
Confidence            987654321111 2234567777666532        223     887  888 544 332222222111111111111 


Q ss_pred             CC--CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          250 CS--GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       250 ~~--~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+  .....+..+.+++.+||+.+|++|| +.++++.
T Consensus       233 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         233 IPPDVSMNLSPVALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             CCccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence            11  0124567899999999999999999 9998863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.97  E-value=1.3e-30  Score=222.33  Aligned_cols=214  Identities=17%  Similarity=0.239  Sum_probs=168.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++.+..       +++.||+|.+...   .......+.+|+.++++++||||+++++++...+..++||||+
T Consensus        11 ~g~~~~vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   83 (290)
T cd05580          11 TGSFGRVMLVRHKG-------SGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEYV   83 (290)
T ss_pred             cCCCeEEEEEEEcC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEecC
Confidence            79999999999875       7899999998653   2234567889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.....
T Consensus        84 ~~~~L~~~~~-------~~~~l~~~~~~~~~~qil~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~  153 (290)
T cd05580          84 PGGELFSHLR-------KSGRFPEPVARFYAAQVVLALEYLH---SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKG  153 (290)
T ss_pred             CCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEeeCCCccccCC
Confidence            9999999993       3457899999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      .    .....+++.|.+|+...      ++     |++  +|+ |.. |+.... ..........+..+.+  ...+..+
T Consensus       154 ~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~~-~~~~~~~~~~~~~~~~--~~~~~~l  225 (290)
T cd05580         154 R----TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYP-PFFDDN-PIQIYEKILEGKVRFP--SFFSPDA  225 (290)
T ss_pred             C----CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCC-CCCCCC-HHHHHHHHhcCCccCC--ccCCHHH
Confidence            3    22345777887777542      22     877  888 644 332222 2222222222222222  2456789


Q ss_pred             HHHHhHhcCCCCCCCC
Q 044211          261 AHLIFECVNESPVDRP  276 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP  276 (292)
                      .+++.+||+.||.+||
T Consensus       226 ~~li~~~l~~~p~~R~  241 (290)
T cd05580         226 KDLIRNLLQVDLTKRL  241 (290)
T ss_pred             HHHHHHHccCCHHHcc
Confidence            9999999999999998

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.97  E-value=1.2e-30  Score=222.05  Aligned_cols=221  Identities=14%  Similarity=0.180  Sum_probs=167.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|+||+||++.+..       +++.||+|.+....   ......+.+|+.+++.++|+||+.+++.+...+..++++||+
T Consensus        10 ~G~~g~vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~   82 (285)
T cd05632          10 KGGFGEVCACQVRA-------TGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIM   82 (285)
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEec
Confidence            79999999999875       88999999986532   122345788999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+++|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||++.....
T Consensus        83 ~~~~L~~~~~~~-----~~~~~~~~~~~~~~~ql~~~l~~lH---~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~  154 (285)
T cd05632          83 NGGDLKFHIYNM-----GNPGFEEERALFYAAEILCGLEDLH---RENTVYRDLKPENILLDDYGHIRISDLGLAVKIPE  154 (285)
T ss_pred             cCccHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEECCCCCEEEecCCcceecCC
Confidence            999999888322     2346999999999999999999999   89999999999999999999999999999876543


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccch--hhhccccc-ccCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRL--NEIIDPLI-MGDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~  257 (292)
                      ...  .....|+..|++|++...      +     |++  +|+ |.. |+......  ...+...+ ......+  ...+
T Consensus       155 ~~~--~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~-P~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  229 (285)
T cd05632         155 GES--IRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQS-PFRGRKEKVKREEVDRRVLETEEVYS--AKFS  229 (285)
T ss_pred             CCc--ccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHhhhccccccC--ccCC
Confidence            221  123467888988876532      2     877  888 543 33222111  11111111 1111111  2456


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HH
Q 044211          258 QAFAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~  278 (292)
                      ..+.+|+.+||+.||++|| +.
T Consensus       230 ~~~~~li~~~l~~~P~~R~~~~  251 (285)
T cd05632         230 EEAKSICKMLLTKDPKQRLGCQ  251 (285)
T ss_pred             HHHHHHHHHHccCCHhHcCCCc
Confidence            6889999999999999999 65

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.97  E-value=2.5e-30  Score=220.75  Aligned_cols=224  Identities=19%  Similarity=0.278  Sum_probs=171.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++....       +++.||+|.+..........+.+|+..++.++|+||+++++.+...+..++++||++++
T Consensus        30 ~g~~g~v~~~~~~~-------~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  102 (292)
T cd06657          30 EGSTGIVCIATVKS-------SGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGG  102 (292)
T ss_pred             CCCCeEEEEEEEcC-------CCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCC
Confidence            89999999999865       88999999987654445567899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.        ...+++..+..++.|++.||+|||   ..+++|+||+|+||++++++.++|+|||++....... 
T Consensus       103 ~L~~~~~--------~~~~~~~~~~~~~~ql~~~l~~lH---~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~-  170 (292)
T cd06657         103 ALTDIVT--------HTRMNEEQIAAVCLAVLKALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-  170 (292)
T ss_pred             cHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEcccccceeccccc-
Confidence            9998872        345788999999999999999999   8999999999999999999999999999987664322 


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchh--hhcccccccCCCCCCchHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLN--EIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      .......|+..|.+++...      ++     |++  +|+ |.. |+.......  ..+.......  .......++.+.
T Consensus       171 ~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~-p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~  247 (292)
T cd06657         171 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEP-PYFNEPPLKAMKMIRDNLPPK--LKNLHKVSPSLK  247 (292)
T ss_pred             ccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHhhCCcc--cCCcccCCHHHH
Confidence            1123345677787776543      22     887  888 544 332211111  1111111111  101124466889


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +++.+||+.||.+|| +.+++..
T Consensus       248 ~li~~~l~~~P~~R~~~~~ll~~  270 (292)
T cd06657         248 GFLDRLLVRDPAQRATAAELLKH  270 (292)
T ss_pred             HHHHHHHhCCcccCcCHHHHhcC
Confidence            999999999999999 9998863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.97  E-value=3.4e-30  Score=223.81  Aligned_cols=228  Identities=15%  Similarity=0.133  Sum_probs=170.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.+...   .......+.+|..++..++|+||+++++++...+..++||||+
T Consensus        11 ~G~fg~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~Ey~   83 (331)
T cd05624          11 RGAFGEVAVVKMKH-------TERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMDYY   83 (331)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCC
Confidence            89999999999875       8889999998642   2223345788999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.+      ....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.....
T Consensus        84 ~gg~L~~~l~~------~~~~l~~~~~~~~~~qi~~~L~~lH---~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~  154 (331)
T cd05624          84 VGGDLLTLLSK------FEDRLPEDMARFYIAEMVLAIHSIH---QLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQ  154 (331)
T ss_pred             CCCcHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCchHHEEEcCCCCEEEEeccceeeccC
Confidence            99999999942      2346889999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCccchhhhhcccccccccccC-----------CC-----CeE--EEc-cchhhhhhccchhhhcccccccC--CCCCC-
Q 044211          195 GETHISELLSGLRAFDLARLNE-----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD--RSCSG-  252 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-  252 (292)
                      +.........|++.|++|++..           ++     |++  +|+ |+. |+.... ..+.........  .+.+. 
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~-Pf~~~~-~~~~~~~i~~~~~~~~~p~~  232 (331)
T cd05624         155 DGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGET-PFYAES-LVETYGKIMNHEERFQFPSH  232 (331)
T ss_pred             CCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCC-CccCCC-HHHHHHHHHcCCCcccCCCc
Confidence            4433334456899998887532           22     888  888 544 443322 111111111111  11111 


Q ss_pred             chHHHHHHHHHHhHhcCCCCCC--CC-HHHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVD--RP-MVDVAKK  283 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~--RP-~~el~~~  283 (292)
                      ..+.+..+.+++.+|+..++.+  |+ +.++++.
T Consensus       233 ~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h  266 (331)
T cd05624         233 ITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKH  266 (331)
T ss_pred             cccCCHHHHHHHHHHccCchhhcCCCCHHHHhcC
Confidence            1235678999999999876554  45 6666543

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.97  E-value=2.2e-30  Score=220.13  Aligned_cols=228  Identities=15%  Similarity=0.153  Sum_probs=167.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|....       +++.||+|.+...  .......+.+|+.++++++||||+++++++..++..++|+||+.
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~   82 (285)
T cd07861          10 EGTYGVVYKGRNKK-------TGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLS   82 (285)
T ss_pred             ccCceEEEEEEECC-------CCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCC
Confidence            79999999999865       8899999998643  22234678899999999999999999999999999999999998


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                       ++|.+++...    .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++......
T Consensus        83 -~~l~~~~~~~----~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  154 (285)
T cd07861          83 -MDLKKYLDSL----PKGQYMDAELVKSYLYQILQGILFCH---SRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIP  154 (285)
T ss_pred             -CCHHHHHhcC----CCCCcCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEEcCCCcEEECcccceeecCCC
Confidence             6998888322    12357899999999999999999999   899999999999999999999999999998765332


Q ss_pred             CccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhcc-------------------
Q 044211          196 ETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIID-------------------  241 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~-------------------  241 (292)
                      . .......++..|++|+....       +     |++  +|+ |+. ++...........                   
T Consensus       155 ~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (285)
T cd07861         155 V-RVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKP-LFHGDSEIDQLFRIFRILGTPTEDVWPGVTSL  232 (285)
T ss_pred             c-ccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHhCCCChhhhhcchhh
Confidence            1 11222345777887775321       2     888  888 543 3322111100000                   


Q ss_pred             ----cccccCCC---CCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 ----PLIMGDRS---CSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 ----~~~~~~~~---~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                          ........   .......++++.+++.+||+.||++|| +.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         233 PDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             HHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence                00000000   000012456788999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.97  E-value=3.4e-30  Score=223.47  Aligned_cols=228  Identities=14%  Similarity=0.180  Sum_probs=165.3

Q ss_pred             CCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           40 NGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        40 ~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|++||++....       +++.||+|.++...  ......+.+|+.+++.++||||+++++++..++..++|+||+++|
T Consensus        12 ~~~~v~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~   84 (327)
T cd08227          12 DLMTVNLARYKP-------TGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYG   84 (327)
T ss_pred             ceEEEEEEeecc-------cCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccCCC
Confidence            789999999876       89999999987542  233456778999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..+.     ...+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.++++||+..........
T Consensus        85 ~l~~~~~~~~-----~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~  156 (327)
T cd08227          85 SAKDLICTHF-----MDGMSELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQ  156 (327)
T ss_pred             cHHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCChhhEEEecCCcEEEcccchhhccccccc
Confidence            9999994331     345889999999999999999999   89999999999999999999999999987544322111


Q ss_pred             c------chhhhhcccccccccccC--------CC-----CeE--EEc-cchhhhhhccch-----------hhhcc---
Q 044211          198 H------ISELLSGLRAFDLARLNE--------DD-----GYV--VLL-DHIKKYFEEDRL-----------NEIID---  241 (292)
Q Consensus       198 ~------~~~~~~g~~~y~~~~~~~--------~~-----Gvi--el~-~~~~~~~~~~~~-----------~~~~~---  241 (292)
                      .      ......++..|++|++..        ++     |++  ||+ |+. |+......           ...++   
T Consensus       157 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~  235 (327)
T cd08227         157 RLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHV-PFKDMPATQMLLEKLNGTVPCLLDTTT  235 (327)
T ss_pred             cccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCC-CCCCcchhHHHHHHhcCCccccccccc
Confidence            0      011234566677776542        22     888  888 554 22211000           00000   


Q ss_pred             ----------------ccccc------CCC-------CCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 ----------------PLIMG------DRS-------CSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 ----------------~~~~~------~~~-------~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                      .....      ..+       .+.....++.+.+++.+||+.||++|| +.++++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~  307 (327)
T cd08227         236 IPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  307 (327)
T ss_pred             hhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcC
Confidence                            00000      000       000123456899999999999999999 9999863

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.97  E-value=1.2e-30  Score=218.70  Aligned_cols=222  Identities=17%  Similarity=0.156  Sum_probs=171.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|+||.||+|....       +++.||+|.+....   ....+.+.+|+..+++++||||+++++++......++|+||+
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   82 (258)
T cd05578          10 KGAFGKVCIVQKRD-------TKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLL   82 (258)
T ss_pred             cCCCceEEEEEEcc-------CCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCC
Confidence            79999999999865       78999999986532   234577999999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++.....
T Consensus        83 ~~~~L~~~l~-------~~~~l~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~  152 (258)
T cd05578          83 LGGDLRYHLS-------QKVKFSEEQVKFWICEIVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTP  152 (258)
T ss_pred             CCCCHHHHHH-------hcCCcCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEEcCCCCEEEeecccccccCC
Confidence            9999999993       2357899999999999999999999   89999999999999999999999999999887654


Q ss_pred             CCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccc--hhhhcccccccCCCCCCchHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDR--LNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ...  .....|+..|.+|++..      ++     |++  +|+ |.. |+.....  ...............+  ...+.
T Consensus       153 ~~~--~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  227 (258)
T cd05578         153 DTL--TTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKR-PYRGHSRTIRDQIRAKQETADVLYP--ATWST  227 (258)
T ss_pred             Ccc--ccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCC-CCCCCCccHHHHHHHHhccccccCc--ccCcH
Confidence            321  22345677776666543      22     877  777 544 3322211  1221111111122222  35668


Q ss_pred             HHHHHHhHhcCCCCCCCC-H--HHHH
Q 044211          259 AFAHLIFECVNESPVDRP-M--VDVA  281 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~--~el~  281 (292)
                      .+.+++.+||+.||.+|| +  .|++
T Consensus       228 ~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         228 EAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             HHHHHHHHHccCChhHcCCccHHHHh
Confidence            999999999999999999 8  5543

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.97  E-value=3.9e-30  Score=216.56  Aligned_cols=225  Identities=16%  Similarity=0.219  Sum_probs=166.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-----cchHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-----PRTYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv  110 (292)
                      +|+||.||+|....       ++..|++|.+....     ......+.+|+.+++.++||||+++++++..  ....+++
T Consensus        12 ~g~~g~vy~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~   84 (266)
T cd06651          12 QGAFGRVYLCYDVD-------TGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIF   84 (266)
T ss_pred             CCCCEEEEEEEEcC-------CCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEE
Confidence            89999999998864       78999999986431     1234568899999999999999999998875  3567899


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +||+++++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++.
T Consensus        85 ~e~~~~~~L~~~l~-------~~~~l~~~~~~~~~~qi~~~l~~LH---~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~  154 (266)
T cd06651          85 MEYMPGGSVKDQLK-------AYGALTESVTRKYTRQILEGMSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASK  154 (266)
T ss_pred             EeCCCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCCCcc
Confidence            99999999999993       3345888999999999999999999   8999999999999999999999999999987


Q ss_pred             ccCCCCcc--chhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCch
Q 044211          191 SIPEGETH--ISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       191 ~~~~~~~~--~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
                      ........  ......++..|.+|+...      ++     |++  |++ |+. |+..................+ ..+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~-pf~~~~~~~~~~~~~~~~~~~-~~~~  232 (266)
T cd06651         155 RLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKP-PWAEYEAMAAIFKIATQPTNP-QLPS  232 (266)
T ss_pred             ccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCC-CccccchHHHHHHHhcCCCCC-CCch
Confidence            65432111  112244677887777543      22     888  888 544 443322222222211111111 1113


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ..+..+.+++ +||..+|++|| +.||+.
T Consensus       233 ~~~~~~~~li-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         233 HISEHARDFL-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             hcCHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence            4566777887 78889999999 999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.97  E-value=3.2e-30  Score=226.41  Aligned_cols=223  Identities=16%  Similarity=0.188  Sum_probs=163.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC------cceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ------IPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~l  109 (292)
                      +|+||.||++....       +++.||+|.+...  .......+.+|+.+++.++||||+++++++....      ..++
T Consensus        31 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~l  103 (359)
T cd07876          31 SGAQGIVCAAFDTV-------LGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYL  103 (359)
T ss_pred             cCCCEEEEEEEEcC-------CCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEE
Confidence            89999999999865       8899999998643  2334567889999999999999999999987543      4689


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ||||+.+ +|.+.+         ...+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++
T Consensus       104 v~e~~~~-~l~~~~---------~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a  170 (359)
T cd07876         104 VMELMDA-NLCQVI---------HMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA  170 (359)
T ss_pred             EEeCCCc-CHHHHH---------hccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEecCCCc
Confidence            9999985 777776         234788899999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchh---hhc------------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLN---EII------------  240 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~---~~~------------  240 (292)
                      .....+..  .....|+..|++|+....      +     |++  +|+ |+. ++.......   ..+            
T Consensus       171 ~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~  247 (359)
T cd07876         171 RTACTNFM--MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSV-IFQGTDHIDQWNKVIEQLGTPSAEFMN  247 (359)
T ss_pred             cccccCcc--CCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHhcCCCcHHHHH
Confidence            76543221  233467888988876432      2     888  888 543 222111000   000            


Q ss_pred             ------cccccc--CCCC------------C----CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          241 ------DPLIMG--DRSC------------S----GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       241 ------~~~~~~--~~~~------------~----~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                            ......  ..+.            +    .....+..+.+|+.+||+.||++|| +.|++..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  315 (359)
T cd07876         248 RLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRH  315 (359)
T ss_pred             HHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcC
Confidence                  000000  0000            0    0011245789999999999999999 9999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.97  E-value=2.8e-30  Score=220.96  Aligned_cols=227  Identities=17%  Similarity=0.168  Sum_probs=168.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-----hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-----TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-----~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      .|+||.||+|....       +++.||+|.+......     ....+..|+.+++.++|+||+++++++...+..++|+|
T Consensus        10 ~g~~~~vy~~~~~~-------~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   82 (298)
T cd07841          10 EGTYAVVYKARDKE-------TGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVFE   82 (298)
T ss_pred             eccccEEEEEEECC-------CCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEEc
Confidence            79999999999865       7899999998754322     33457789999999999999999999999889999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+ +|+|.+++.      .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++...
T Consensus        83 ~~-~~~L~~~i~------~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~  152 (298)
T cd07841          83 FM-ETDLEKVIK------DKSIVLTPADIKSYMLMTLRGLEYLH---SNWILHRDLKPNNLLIASDGVLKLADFGLARSF  152 (298)
T ss_pred             cc-CCCHHHHHh------ccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCChhhEEEcCCCCEEEccceeeeec
Confidence            99 789999993      11236899999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhh---hc--------------
Q 044211          193 PEGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNE---II--------------  240 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~---~~--------------  240 (292)
                      ...... .....++..|.+|+...       ++     |++  +|+ | .+++........   ..              
T Consensus       153 ~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (298)
T cd07841         153 GSPNRK-MTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLR-VPFLPGDSDIDQLGKIFEALGTPTEENWPGV  230 (298)
T ss_pred             cCCCcc-ccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcC-CccccCCccHHHHHHHHHHcCCCchhhhhhc
Confidence            543211 12234566777776432       12     888  888 6 322221111100   00              


Q ss_pred             ----ccccccCCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          241 ----DPLIMGDRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       241 ----~~~~~~~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                          ........+...    ....+..+.+++.+||+.||++|| +.|++..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         231 TSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             ccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence                000000000000    023456889999999999999999 9999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.97  E-value=1.8e-30  Score=220.97  Aligned_cols=220  Identities=15%  Similarity=0.208  Sum_probs=166.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++.+..       +++.||+|.+....   ......+.+|+.++++++|+||+.+++.+...+..++||||+
T Consensus        10 ~G~~g~v~~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~   82 (285)
T cd05630          10 KGGFGEVCACQVRA-------TGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLM   82 (285)
T ss_pred             cCCCeEEEEEEEcC-------CCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEec
Confidence            79999999999976       88999999986532   122345778999999999999999999999989999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+++|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||||+||++++++.++|+|||++.....
T Consensus        83 ~g~~L~~~l~~~-----~~~~l~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~  154 (285)
T cd05630          83 NGGDLKFHIYHM-----GEAGFEEGRAVFYAAEICCGLEDLH---QERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE  154 (285)
T ss_pred             CCCcHHHHHHHh-----cccCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeccceeecCC
Confidence            999999988422     2345889999999999999999999   89999999999999999999999999999876543


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccc--hhhhcccccccCCCCCCchHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDR--LNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ...  .....|+..|++|+.....           |++  +|+ |.. |+.....  .............. ..+...++
T Consensus       155 ~~~--~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~-Pf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  230 (285)
T cd05630         155 GQT--IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQS-PFQQRKKKIKREEVERLVKEVQE-EYSEKFSP  230 (285)
T ss_pred             Ccc--ccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCC-CCCCCCccchHHHHHhhhhhhhh-hcCccCCH
Confidence            322  1234678888888765332           877  888 544 3332111  00011111110000 01124566


Q ss_pred             HHHHHHhHhcCCCCCCCC
Q 044211          259 AFAHLIFECVNESPVDRP  276 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP  276 (292)
                      .+.+|+.+||+.||++||
T Consensus       231 ~~~~li~~~l~~~p~~R~  248 (285)
T cd05630         231 DARSLCKMLLCKDPKERL  248 (285)
T ss_pred             HHHHHHHHHhhcCHHHcc
Confidence            899999999999999999

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.97  E-value=3.1e-30  Score=217.18  Aligned_cols=227  Identities=17%  Similarity=0.225  Sum_probs=171.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc------chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP------RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||++....       +++.||+|.+.....      ...+.+.+|+..+++++|+||+++++++...+..++|+
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~   82 (268)
T cd06630          10 TGAFSSCYQARDVK-------TGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFV   82 (268)
T ss_pred             CcCceEEEEEEEcC-------CCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEEE
Confidence            89999999999765       889999999865321      13467899999999999999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC-ceEEeeccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFSI  190 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~-~~kl~Dfg~a~  190 (292)
                      ||+.+++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++ .++|+|||.+.
T Consensus        83 e~~~~~~L~~~l~-------~~~~~~~~~~~~~~~ql~~al~~LH---~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~  152 (268)
T cd06630          83 EWMAGGSVSHLLS-------KYGAFKEAVIINYTEQLLRGLSYLH---ENQIIHRDVKGANLLIDSTGQRLRIADFGAAA  152 (268)
T ss_pred             eccCCCcHHHHHH-------HhCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEccccccc
Confidence            9999999999994       2346889999999999999999999   89999999999999998765 69999999987


Q ss_pred             ccCCCCcc---chhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhcc--chhhhcccccccCCCCC
Q 044211          191 SIPEGETH---ISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEED--RLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       191 ~~~~~~~~---~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~  251 (292)
                      ........   ......++..|++|+...      ++     |++  +|+ |.. |+....  .....+...........
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~  231 (268)
T cd06630         153 RLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKP-PWNAEKHSNHLALIFKIASATTAPS  231 (268)
T ss_pred             ccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCC-CCCCCCCcchHHHHHHHhccCCCCC
Confidence            76543211   112345677887776532      22     877  887 553 332111  11111111111111222


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+...++.+.+++.+||+.+|++|| +.+++.
T Consensus       232 ~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         232 IPEHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             CchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence            2235678899999999999999999 999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=6.3e-30  Score=214.69  Aligned_cols=236  Identities=17%  Similarity=0.194  Sum_probs=183.3

Q ss_pred             ccccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceee
Q 044211           24 RSFCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIG   99 (292)
Q Consensus        24 ~~~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~   99 (292)
                      ....+..++..... .|.-|+||.+..+.       ++..+|+|++.+.   +.....+...|-++|+.++||.++.+|.
T Consensus        72 ~~l~l~~f~llk~LG~GdiG~VyL~~l~~-------t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa  144 (459)
T KOG0610|consen   72 GSLGLRHFRLLKRLGCGDIGTVYLVELRG-------TNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYA  144 (459)
T ss_pred             CccCHHHHHHHHHcCCCCceeEEEEEecC-------CCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhh
Confidence            33455555555544 89999999999975       6789999999764   3334566788999999999999999999


Q ss_pred             eeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC
Q 044211          100 CCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN  179 (292)
Q Consensus       100 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~  179 (292)
                      .+..+...+++||||+||+|..+.+     .+...-+++..+..++.+|+.||.|||   ..|||.|||||+||||.++|
T Consensus       145 ~fet~~~~cl~meyCpGGdL~~Lrq-----kQp~~~fse~~aRFYaAEvl~ALEYLH---mlGivYRDLKPENILvredG  216 (459)
T KOG0610|consen  145 SFETDKYSCLVMEYCPGGDLHSLRQ-----KQPGKRFSESAARFYAAEVLLALEYLH---MLGIVYRDLKPENILVREDG  216 (459)
T ss_pred             eeeccceeEEEEecCCCccHHHHHh-----hCCCCccchhhHHHHHHHHHHHHHHHH---hhceeeccCCcceeEEecCC
Confidence            9999999999999999999999884     245778999999999999999999999   99999999999999999999


Q ss_pred             ceEEeecccccccCC---------------------------------CCc----------------------cchhhhh
Q 044211          180 VAKLFDFSFSISIPE---------------------------------GET----------------------HISELLS  204 (292)
Q Consensus       180 ~~kl~Dfg~a~~~~~---------------------------------~~~----------------------~~~~~~~  204 (292)
                      .+-|+||.++.....                                 ...                      ..+..++
T Consensus       217 HIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFV  296 (459)
T KOG0610|consen  217 HIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFV  296 (459)
T ss_pred             cEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccc
Confidence            999999988754311                                 000                      0123466


Q ss_pred             cccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCC
Q 044211          205 GLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNE  270 (292)
Q Consensus       205 g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~  270 (292)
                      ||-.|.+||+....           ||+  ||+ |.. ||-...+ .+.+.-++......+..+..+..+.+||.+.|.+
T Consensus       297 GThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~T-PFKG~~~-~~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvK  374 (459)
T KOG0610|consen  297 GTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTT-PFKGSNN-KETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVK  374 (459)
T ss_pred             cccccccceeeecCCCCchhhHHHHHHHHHHHHhCCC-CcCCCCc-hhhHHHHhcCCCcCCCCCcchhHHHHHHHHHhcc
Confidence            88888888877644           888  888 654 4433333 3333333444444444346677899999999999


Q ss_pred             CCCCCC
Q 044211          271 SPVDRP  276 (292)
Q Consensus       271 dP~~RP  276 (292)
                      ||.+|-
T Consensus       375 dP~kRl  380 (459)
T KOG0610|consen  375 DPSKRL  380 (459)
T ss_pred             Chhhhh
Confidence            999998

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=2.4e-30  Score=232.32  Aligned_cols=223  Identities=16%  Similarity=0.150  Sum_probs=165.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||++.+..       .++.||+|....      ..+.+|++++++++|+||+++++++...+..++|+|++. +
T Consensus       179 ~G~~G~Vy~a~~~~-------~~~~vavK~~~~------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~  244 (461)
T PHA03211        179 PGSEGCVFESSHPD-------YPQRVVVKAGWY------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR-S  244 (461)
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEecccc------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC-C
Confidence            79999999999975       788999996432      235689999999999999999999999999999999996 6


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.      .....+++..++.++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||+++.......
T Consensus       245 ~L~~~l~------~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~  315 (461)
T PHA03211        245 DLYTYLG------ARLRPLGLAQVTAVARQLLSAIDYIH---GEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWS  315 (461)
T ss_pred             CHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEECcCCHHHEEECCCCCEEEcccCCceecccccc
Confidence            9988883      22346999999999999999999999   89999999999999999999999999999987644322


Q ss_pred             c-chhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhc---------cchhhhccccc---cc----
Q 044211          198 H-ISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEE---------DRLNEIIDPLI---MG----  246 (292)
Q Consensus       198 ~-~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~---------~~~~~~~~~~~---~~----  246 (292)
                      . ......||..|+++++...      +     ||+  ||+ +....+...         ..+..++...-   ..    
T Consensus       316 ~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~  395 (461)
T PHA03211        316 TPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQH  395 (461)
T ss_pred             cccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCC
Confidence            2 1234568999988876532      2     888  776 443211110         00111111000   00    


Q ss_pred             ----------------CCCC---CC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          247 ----------------DRSC---SG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       247 ----------------~~~~---~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                      ..+.   +.   .......+.+|+.+||+.||.+|| +.|+++.
T Consensus       396 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        396 AGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             cchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence                            0000   00   012234788999999999999999 9999874

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.97  E-value=1.5e-30  Score=233.78  Aligned_cols=225  Identities=16%  Similarity=0.200  Sum_probs=162.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecC--------CcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLET--------QIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--------~~~~l  109 (292)
                      +|+||.||+|....       +++.||||.+....    ....+|+.+++.++||||+++++++...        ..+++
T Consensus        76 ~G~fg~Vy~~~~~~-------~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~l  144 (440)
T PTZ00036         76 NGSFGVVYEAICID-------TSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNV  144 (440)
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEE
Confidence            89999999999865       78999999986542    2244799999999999999999887532        23568


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC-CceEEeeccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE-NVAKLFDFSF  188 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~-~~~kl~Dfg~  188 (292)
                      ||||++ ++|.+++....   .....+++..+..++.|++.||.|||   ..+|+||||||+|||++.+ +.+||+|||+
T Consensus       145 vmE~~~-~~l~~~~~~~~---~~~~~l~~~~~~~~~~qi~~gL~yLH---~~~IiHrDLKp~NILl~~~~~~vkL~DFGl  217 (440)
T PTZ00036        145 VMEFIP-QTVHKYMKHYA---RNNHALPLFLVKLYSYQLCRALAYIH---SKFICHRDLKPQNLLIDPNTHTLKLCDFGS  217 (440)
T ss_pred             EEecCC-ccHHHHHHHHh---hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCcCHHHEEEcCCCCceeeecccc
Confidence            999998 48888774322   24567899999999999999999999   8999999999999999965 4799999999


Q ss_pred             ccccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhh---hcc---------
Q 044211          189 SISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNE---IID---------  241 (292)
Q Consensus       189 a~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~---~~~---------  241 (292)
                      +..+.....  .....|++.|++|++...       +     |++  ||+ |. +|+........   ++.         
T Consensus       218 a~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~-~pf~~~~~~~~~~~i~~~~~~p~~~~  294 (440)
T PTZ00036        218 AKNLLAGQR--SVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGY-PIFSGQSSVDQLVRIIQVLGTPTEDQ  294 (440)
T ss_pred             chhccCCCC--cccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCC-CCCCCCChHHHHHHHHHHhCCCCHHH
Confidence            987654332  223467888988885321       1     888  888 64 34332211111   100         


Q ss_pred             -----ccccc-CCCCCC--------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 -----PLIMG-DRSCSG--------NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 -----~~~~~-~~~~~~--------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                           +.... ..+...        +...+.++.+|+.+||+.||.+|| +.|+++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~h  351 (440)
T PTZ00036        295 LKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALAD  351 (440)
T ss_pred             HHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCC
Confidence                 00000 000000        012356899999999999999999 9998854

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=2.5e-30  Score=226.75  Aligned_cols=225  Identities=20%  Similarity=0.225  Sum_probs=187.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|.|++|..+.+..       ++..||||.+++...  .....+.+|+++|..|+|||||+++.+......+|+||||+.
T Consensus        66 ~g~f~~V~La~~~~-------t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~eya~  138 (596)
T KOG0586|consen   66 KGNFAKVKLARHIL-------TGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVMEYAS  138 (596)
T ss_pred             cceeEEEEeeEecC-------CCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEEEecc
Confidence            89999999999876       899999999987533  233568999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|.+.+++..+       ....+..+..++.|++.|++|||   .+.|+|||||++|||++.+.++||+|||++..+..+
T Consensus       139 ~ge~~~yl~~~-------gr~~e~~ar~~F~q~vsaveYcH---~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~  208 (596)
T KOG0586|consen  139 GGELFDYLVKH-------GRMKEKEARAKFRQIVSAVEYCH---SKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYG  208 (596)
T ss_pred             CchhHHHHHhc-------ccchhhhhhhhhHHHHHHHHHHh---hcceeccccchhhcccccccceeeeccccceeeccc
Confidence            99999999544       34555888899999999999999   999999999999999999999999999999888643


Q ss_pred             CccchhhhhcccccccccccCCC------------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD------------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                        ......+|++.|.+|++....            |++  -|+....|| +...+.++-.+.+.+.+..+-  -...++.
T Consensus       209 --~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPF-DG~~lk~Lr~rvl~gk~rIp~--~ms~dce  283 (596)
T KOG0586|consen  209 --LMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPF-DGQNLKELRPRVLRGKYRIPF--YMSCDCE  283 (596)
T ss_pred             --ccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeeccccc-CCcccccccchheeeeecccc--eeechhH
Confidence              334567889999777665433            888  444444444 445666666777777776654  5666899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      +++++.+-.+|.+|+ ..++.+.-
T Consensus       284 ~lLrk~lvl~Pskr~~~dqim~~~  307 (596)
T KOG0586|consen  284 DLLRKFLVLNPSKRGPCDQIMKDR  307 (596)
T ss_pred             HHHHHhhccCccccCCHHHhhhhc
Confidence            999999999999999 99988753

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.97  E-value=2.2e-30  Score=219.47  Aligned_cols=227  Identities=14%  Similarity=0.160  Sum_probs=169.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||+||++....       +++.||+|.+....   ......+.+|+.+++.++||||+++++++...+..++|+||+
T Consensus         3 ~g~~g~vy~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   75 (277)
T cd05577           3 KGGFGEVCACQVKA-------TGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLM   75 (277)
T ss_pred             CCCceeEEEEEEcC-------CCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecC
Confidence            69999999998765       88999999986432   223445778999999999999999999999989999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.+++...     ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++.....
T Consensus        76 ~~~~L~~~l~~~-----~~~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~  147 (277)
T cd05577          76 NGGDLKYHIYNV-----GEPGFPEARAIFYAAQIICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKG  147 (277)
T ss_pred             CCCcHHHHHHHc-----CcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEccCcchhhhcc
Confidence            999999998422     2246899999999999999999999   89999999999999999999999999999876643


Q ss_pred             CCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccc---hhhhcccccccCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDR---LNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ...  .....++..|.+|++..      ++     |++  +|+ |+. |+.....   ...+...........  +...+
T Consensus       148 ~~~--~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  222 (277)
T cd05577         148 GKK--IKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRS-PFRQRKEKVEKEELKRRTLEMAVEY--PDKFS  222 (277)
T ss_pred             CCc--cccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCC-CCCCCcccccHHHHHhccccccccC--CccCC
Confidence            211  22344666777776532      22     887  887 544 3322111   111111111111111  12457


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHH-HHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVD-VAKKT  284 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~e-l~~~L  284 (292)
                      +.+.+++.+||+.||++|| +.+ ....|
T Consensus       223 ~~~~~li~~~l~~~p~~R~~~~~~~~~~l  251 (277)
T cd05577         223 PEAKDLCEALLQKDPEKRLGCRGGSADEV  251 (277)
T ss_pred             HHHHHHHHHHccCChhHccCCCcccHHHH
Confidence            7899999999999999999 877 55444

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.97  E-value=8.7e-30  Score=219.95  Aligned_cols=225  Identities=20%  Similarity=0.291  Sum_probs=172.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       ++..||+|.+....   ......+.+|+..+++++|+|++++++++..++..++|+||+
T Consensus        35 ~G~~~~v~~~~~~~-------~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  107 (317)
T cd06635          35 HGSFGAVYFARDVR-------TNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYC  107 (317)
T ss_pred             cCCCeEEEEEEEcC-------CCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCC
Confidence            89999999999865       78999999986432   233457889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      . |+|.+.+..      ....+++..+..++.+++.||.|||   ..+++|+||+|+||+++.++.++|+|||++.....
T Consensus       108 ~-g~l~~~~~~------~~~~l~~~~~~~i~~~i~~~l~~lH---~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~  177 (317)
T cd06635         108 L-GSASDLLEV------HKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASIASP  177 (317)
T ss_pred             C-CCHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcccEEECCCCCEEEecCCCccccCC
Confidence            8 588887732      2456899999999999999999999   89999999999999999999999999999865433


Q ss_pred             CCccchhhhhcccccccccccC---------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE---------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      .     ....|+..|.+|+...         ++     |++  +|+ |.. |+....... ..........+.......+
T Consensus       178 ~-----~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~-p~~~~~~~~-~~~~~~~~~~~~~~~~~~~  250 (317)
T cd06635         178 A-----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP-PLFNMNAMS-ALYHIAQNESPTLQSNEWS  250 (317)
T ss_pred             c-----ccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCC-CCCCccHHH-HHHHHHhccCCCCCCcccc
Confidence            2     2345677787777531         22     888  888 654 333322111 1111122222222223566


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      ..+.+++.+||+.+|.+|| +.++++.+.-
T Consensus       251 ~~l~~li~~~l~~~p~~Rpt~~~il~~~~~  280 (317)
T cd06635         251 DYFRNFVDSCLQKIPQDRPTSEELLKHMFV  280 (317)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHhChhh
Confidence            7899999999999999999 9999986543

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.8e-30  Score=213.58  Aligned_cols=225  Identities=20%  Similarity=0.304  Sum_probs=174.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|++|.||++....       +++.|++|.+.....  .....+.+|+.++++++|+|++++++++...+..++++||+.
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   82 (254)
T cd06627          10 RGAFGVVYKGLNLE-------TGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAE   82 (254)
T ss_pred             ccCCeEEEEEEEcC-------CCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecCC
Confidence            79999999998865       788999999976543  455679999999999999999999999999889999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++......
T Consensus        83 ~~~L~~~~~-------~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  152 (254)
T cd06627          83 NGSLRQIIK-------KFGPFPESLVAVYVYQVLQGLAYLH---EQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDV  152 (254)
T ss_pred             CCcHHHHHH-------hccCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEECCCCCEEEeccccceecCCC
Confidence            999999993       3357899999999999999999999   899999999999999999999999999999877543


Q ss_pred             CccchhhhhcccccccccccC------CC-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNE------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      ... .....++..|.+|+...      ++     |++  +|+....|+..................+.+  ...+..+.+
T Consensus       153 ~~~-~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  229 (254)
T cd06627         153 SKD-DASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDDHPPLP--EGISPELKD  229 (254)
T ss_pred             ccc-ccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCCCCC--CCCCHHHHH
Confidence            321 23345677787776542      22     777  777333343332222222221111111111  355678999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ++.+||+.+|++|| +.+++.
T Consensus       230 ~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         230 FLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             HHHHHHhCChhhCcCHHHHhc
Confidence            99999999999999 999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.97  E-value=5.4e-30  Score=218.13  Aligned_cols=231  Identities=16%  Similarity=0.178  Sum_probs=169.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||++....       +++.||+|.+.... ......+.+|+..+.++. |+||+++++++..++..++++||+.
T Consensus        14 ~G~~g~vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~   86 (288)
T cd06616          14 RGAFGTVNKMLHKP-------SGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMD   86 (288)
T ss_pred             CCCceEEEEEEECC-------CCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEeccc
Confidence            89999999999875       88999999987542 234457889999999996 9999999999999889999999987


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                       +++.++.....  ......+++..+..++.+++.||.|||+  ..+++|+||+|+||+++.++.++|+|||++......
T Consensus        87 -~~l~~l~~~~~--~~~~~~l~~~~~~~i~~~i~~~l~~lh~--~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  161 (288)
T cd06616          87 -ISLDKFYKYVY--EVLKSVIPEEILGKIAVATVKALNYLKE--ELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDS  161 (288)
T ss_pred             -CCHHHHHHHHH--HhhcCCCCHHHHHHHHHHHHHHHHHHhh--cCCeeccCCCHHHEEEccCCcEEEeecchhHHhccC
Confidence             47766542111  1124678999999999999999999993  358999999999999999999999999999766433


Q ss_pred             Cccchhhhhccccccccccc---------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC---chH
Q 044211          196 ETHISELLSGLRAFDLARLN---------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG---NQQ  255 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~---------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  255 (292)
                      ...  ....|+..|.+|+..         .++     |++  +|+ |+. |+.........+.....+..+...   +..
T Consensus       162 ~~~--~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (288)
T cd06616         162 IAK--TRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKF-PYPKWNSVFDQLTQVVKGDPPILSNSEERE  238 (288)
T ss_pred             Ccc--ccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCC-CchhcchHHHHHhhhcCCCCCcCCCcCCCc
Confidence            221  223567778666642         233     888  888 554 332221111111221222211111   124


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+..+.+|+.+||+.||++|| +.+|+..
T Consensus       239 ~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         239 FSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             cCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            677899999999999999999 9998875

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.97  E-value=4.7e-30  Score=220.01  Aligned_cols=226  Identities=15%  Similarity=0.117  Sum_probs=167.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||+|....       +++.||+|.+.... ......+.+|+..+++++||||+++++++...+..++|+||+. 
T Consensus        16 ~g~~g~vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~-   87 (301)
T cd07873          16 EGTYATVYKGRSKL-------TDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-   87 (301)
T ss_pred             cCcCEEEEEEEEcC-------CCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEeccc-
Confidence            89999999999865       78999999986542 2334567899999999999999999999999999999999998 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++.      .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++.......
T Consensus        88 ~~l~~~l~------~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~  158 (301)
T cd07873          88 KDLKQYLD------DCGNSINMHNVKLFLFQLLRGLNYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT  158 (301)
T ss_pred             cCHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCC
Confidence            59998883      22446889999999999999999999   8999999999999999999999999999987653322


Q ss_pred             ccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccch--------------hhhcccccc--
Q 044211          197 THISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRL--------------NEIIDPLIM--  245 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~--------------~~~~~~~~~--  245 (292)
                      . ......++..|++|+...       ++     |++  +|+ |+. ++......              ...+...+.  
T Consensus       159 ~-~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
T cd07873         159 K-TYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRP-LFPGSTVEEQLHFIFRILGTPTEETWPGILSNE  236 (301)
T ss_pred             C-cccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHcCCCChhhchhhhccc
Confidence            1 112234677887777532       22     888  888 643 32221110              000000000  


Q ss_pred             ----cCCCCC-------CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          246 ----GDRSCS-------GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       246 ----~~~~~~-------~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                          ...+..       .....++.+.+|+.+||+.||.+|| +.|++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         237 EFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             cccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence                000000       0013466789999999999999999 999987

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.97  E-value=2.5e-31  Score=222.66  Aligned_cols=224  Identities=25%  Similarity=0.382  Sum_probs=172.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHH--HHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYD--CCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~--~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||++....       +++.||+|.+.........  ...+|+..+++++||||+++++++......+++|||+.
T Consensus         9 ~G~~g~v~~~~~~~-------~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~   81 (260)
T PF00069_consen    9 SGGFGTVYKAKNKK-------NGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCP   81 (260)
T ss_dssp             EESSEEEEEEEETT-------TTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEET
T ss_pred             eCCCEEEEEEEECC-------CCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccccccccccccc
Confidence            79999999999976       7889999999876443332  34569999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++.       ....+++..+..++.|++.||.+||   +.+++|+||+|+||++++++.++|+|||.+.... .
T Consensus        82 ~~~L~~~l~-------~~~~~~~~~~~~~~~qi~~~L~~Lh---~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~-~  150 (260)
T PF00069_consen   82 GGSLQDYLQ-------KNKPLSEEEILKIAYQILEALAYLH---SKGIVHRDIKPENILLDENGEVKLIDFGSSVKLS-E  150 (260)
T ss_dssp             TEBHHHHHH-------HHSSBBHHHHHHHHHHHHHHHHHHH---HTTEEESSBSGGGEEESTTSEEEESSGTTTEEST-S
T ss_pred             ccccccccc-------ccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccc-c
Confidence            999999993       3567899999999999999999999   8999999999999999999999999999997642 1


Q ss_pred             CccchhhhhcccccccccccC-CC-----------CeE--EEc-cchhhhhhc--cchhhhcccccc----cCCCCCCch
Q 044211          196 ETHISELLSGLRAFDLARLNE-DD-----------GYV--VLL-DHIKKYFEE--DRLNEIIDPLIM----GDRSCSGNQ  254 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~-~~-----------Gvi--el~-~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~  254 (292)
                      .........++..|.+|+... ..           |++  +|+ |.. |+...  ......+.....    ......  .
T Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  227 (260)
T PF00069_consen  151 NNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKL-PFEESNSDDQLEIIEKILKRPLPSSSQQS--R  227 (260)
T ss_dssp             TTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSS-SSTTSSHHHHHHHHHHHHHTHHHHHTTSH--T
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccchhhhhhhhhccccccccccccc--c
Confidence            222334566788898888765 22           888  887 543 33222  111111111111    111000  0


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .....+.+++.+||+.||++|| +.++++
T Consensus       228 ~~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  228 EKSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             TSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             hhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1236899999999999999999 999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.97  E-value=3.1e-30  Score=219.25  Aligned_cols=226  Identities=19%  Similarity=0.209  Sum_probs=167.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +++.||+|.+....  ....+.+.+|+.++++++|+||+++++++......++|+||++
T Consensus        11 ~g~~~~v~~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~   83 (286)
T cd07847          11 EGSYGVVFKCRNRE-------TGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCD   83 (286)
T ss_pred             ccCCeEEEEEEECC-------CCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccC
Confidence            79999999999875       78999999986432  2234567899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|..++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++......
T Consensus        84 ~~~l~~~~~-------~~~~~~~~~~~~~~~ql~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  153 (286)
T cd07847          84 HTVLNELEK-------NPRGVPEHLIKKIIWQTLQAVNFCH---KHNCIHRDVKPENILITKQGQIKLCDFGFARILTGP  153 (286)
T ss_pred             ccHHHHHHh-------CCCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCChhhEEEcCCCcEEECccccceecCCC
Confidence            988887772       3446899999999999999999999   899999999999999999999999999999877543


Q ss_pred             Cccchhhhhccccccccccc-------CCC-----CeE--EEc-cchhhhhhccchhhhcc------c------------
Q 044211          196 ETHISELLSGLRAFDLARLN-------EDD-----GYV--VLL-DHIKKYFEEDRLNEIID------P------------  242 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~-------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~------~------------  242 (292)
                      ... .....++..|.+|+..       .++     |++  +|+ |.. |+...........      .            
T Consensus       154 ~~~-~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (286)
T cd07847         154 GDD-YTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQP-LWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTN  231 (286)
T ss_pred             ccc-ccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCCChHHhhhcccc
Confidence            311 1223456667666642       222     888  888 643 3322111110000      0            


Q ss_pred             ----cc-ccCCCCCC-----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 ----LI-MGDRSCSG-----NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 ----~~-~~~~~~~~-----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                          .. ...+....     ....+..+.+++.+||+.+|++|| +.|++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         232 QFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             cccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence                00 00000000     012356789999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.97  E-value=1.7e-30  Score=220.83  Aligned_cols=226  Identities=20%  Similarity=0.247  Sum_probs=168.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +++.||+|.+....  ....+.+.+|+.+++.++||||+++++++......++|+||++
T Consensus        11 ~g~~~~vy~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   83 (286)
T cd07846          11 EGSYGMVMKCKHKE-------TGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVD   83 (286)
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEecCC
Confidence            79999999999865       78999999976432  2234568899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|..+..       ....+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||++......
T Consensus        84 ~~~l~~~~~-------~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~  153 (286)
T cd07846          84 HTVLDDLEK-------YPNGLDESRVRKYLFQILRGIEFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP  153 (286)
T ss_pred             ccHHHHHHh-------ccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCC
Confidence            988888772       2345899999999999999999999   889999999999999999999999999999876543


Q ss_pred             CccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhh-----------------hcc--
Q 044211          196 ETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNE-----------------IID--  241 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~-----------------~~~--  241 (292)
                      .. ......++..|++|++..       ++     |++  ||+ |+. ++........                 ...  
T Consensus       154 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (286)
T cd07846         154 GE-VYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEP-LFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKN  231 (286)
T ss_pred             cc-ccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCC-CCCCCchHHHHHHHHHHhCCCchhhHHHhccc
Confidence            32 122345677787777532       22     888  888 643 2221111000                 000  


Q ss_pred             ----cccccCCCCC-----CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 ----PLIMGDRSCS-----GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 ----~~~~~~~~~~-----~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                          ..........     ..+..+..+.+++.+||+.+|++|| +.++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         232 PLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             hHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence                0000000000     0113466899999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.97  E-value=7e-30  Score=212.50  Aligned_cols=226  Identities=19%  Similarity=0.316  Sum_probs=174.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|++|.||++....       +++.|++|.+..........+.+|+..++.++|+|++++++++......++++||++++
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~   82 (253)
T cd05122          10 KGGFGEVYKARHKR-------TGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGG   82 (253)
T ss_pred             cCCceEEEEEEECC-------CCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCC
Confidence            78999999999965       78999999998765455678999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..      ....+++..+..++.|++.||.+||   ..+++|+||+|+||++++++.++|+|||.+........
T Consensus        83 ~L~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  153 (253)
T cd05122          83 SLKDLLKS------TNQTLTESQIAYVCKELLKGLEYLH---SNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA  153 (253)
T ss_pred             cHHHHHhh------cCCCCCHHHHHHHHHHHHHHHHHhh---cCCEecCCCCHHHEEEccCCeEEEeecccccccccccc
Confidence            99999932      2257899999999999999999999   89999999999999999999999999999987754332


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                        .....++..|.+|++..      ++     |++  +|+ |.. |+....................+.....+..+.++
T Consensus       154 --~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (253)
T cd05122         154 --RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKP-PYSELPPMKALFKIATNGPPGLRNPEKWSDEFKDF  230 (253)
T ss_pred             --ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCC-CCCCCchHHHHHHHHhcCCCCcCcccccCHHHHHH
Confidence              23455677787776543      23     877  777 543 33222111111111111111111111236689999


Q ss_pred             HhHhcCCCCCCCC-HHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+||+.||++|| +.+++.
T Consensus       231 i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         231 LKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             HHHHccCChhhCCCHHHHhc
Confidence            9999999999999 999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.97  E-value=6.2e-30  Score=213.82  Aligned_cols=225  Identities=19%  Similarity=0.213  Sum_probs=172.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||++....       +++.+|+|.+...  .......+.+|+.+++.++||||+++++.+...+..++|+||++
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd08220          10 RGAFGIVHLCRRKA-------DQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAP   82 (256)
T ss_pred             ccCceEEEEEEEcC-------CCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCC
Confidence            79999999999865       8899999998653  23345678999999999999999999999998889999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC-CceEEeecccccccCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE-NVAKLFDFSFSISIPE  194 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~-~~~kl~Dfg~a~~~~~  194 (292)
                      +++|.+++...     ....+++..+..++.+++.||.|||   +.+++|+||+|+||+++.+ +.++|+|||.+.....
T Consensus        83 ~~~L~~~~~~~-----~~~~~~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~  154 (256)
T cd08220          83 GGTLAEYIQKR-----CNSLLDEDTILHFFVQILLALHHVH---TKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSS  154 (256)
T ss_pred             CCCHHHHHHHh-----cccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCC
Confidence            99999999422     2456899999999999999999999   8999999999999999854 5689999999987654


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ...  .....++..|++|+.....           |++  +|+ |.. ++.. .................. +...+..+
T Consensus       155 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~l  229 (256)
T cd08220         155 KSK--AYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKR-AFEA-ANLPALVLKIMSGTFAPI-SDRYSPDL  229 (256)
T ss_pred             Ccc--ccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCC-Cccc-CchHHHHHHHHhcCCCCC-CCCcCHHH
Confidence            322  2234577788777765322           877  777 533 3322 222222222222222111 12567789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+++.+||+.+|++|| +.+++.
T Consensus       230 ~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         230 RQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             HHHHHHHccCChhhCCCHHHHhh
Confidence            9999999999999999 999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.97  E-value=9.4e-30  Score=213.53  Aligned_cols=232  Identities=15%  Similarity=0.140  Sum_probs=174.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv~e~  113 (292)
                      .|+||.||++....       +++.||+|.++..  .....+.+.+|+..+++++|+||+++++++..  ....++++||
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~   82 (265)
T cd08217          10 KGSFGTVRKVRRKS-------DGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEY   82 (265)
T ss_pred             cCCCeEEEEeeecC-------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehh
Confidence            79999999999875       8899999998643  33345678899999999999999999998764  3457899999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--CCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF--PRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      +++++|.+++....   .....+++..++.++.|++.||.|||..+  ..+++|+||+|+||+++.++.+||+|||++..
T Consensus        83 ~~~~~L~~~l~~~~---~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~  159 (265)
T cd08217          83 CEGGDLAQLIQKCK---KERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKI  159 (265)
T ss_pred             ccCCCHHHHHHHHh---hcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEeccccccc
Confidence            99999999996442   23567899999999999999999999443  56899999999999999999999999999987


Q ss_pred             cCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          192 IPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ....... .....++..|++|+.....           |++  +|+ |.. |+... ......+....+..+. .+...+
T Consensus       160 ~~~~~~~-~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~-p~~~~-~~~~~~~~~~~~~~~~-~~~~~~  235 (265)
T cd08217         160 LGHDSSF-AKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSP-PFTAR-NQLQLASKIKEGKFRR-IPYRYS  235 (265)
T ss_pred             ccCCccc-ccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCC-cccCc-CHHHHHHHHhcCCCCC-CccccC
Confidence            7544321 1234577788777764322           877  777 543 33221 1222222222222211 113566


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+.+++.+||+.+|++|| +.+|++.
T Consensus       236 ~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         236 SELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             HHHHHHHHHHccCCcccCCCHHHHhhC
Confidence            7899999999999999999 9999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.97  E-value=4.5e-30  Score=223.09  Aligned_cols=228  Identities=15%  Similarity=0.133  Sum_probs=172.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++.+..       +++.||+|.+...   .......+.+|..++..++|+||+++++++...+..++||||+
T Consensus        11 ~G~fg~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ey~   83 (332)
T cd05623          11 RGAFGEVAVVKLKN-------ADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMDYY   83 (332)
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEecc
Confidence            89999999999875       7889999998642   2223345788999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+|+|.+++.+      ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++..+..
T Consensus        84 ~~g~L~~~l~~------~~~~l~~~~~~~~~~qi~~al~~lH---~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~  154 (332)
T cd05623          84 VGGDLLTLLSK------FEDRLPEDMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLME  154 (332)
T ss_pred             CCCcHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEeecchheeccc
Confidence            99999999942      2346889999999999999999999   89999999999999999999999999999976644


Q ss_pred             CCccchhhhhcccccccccccC-----------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCC--CCC-C
Q 044211          195 GETHISELLSGLRAFDLARLNE-----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR--SCS-G  252 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~  252 (292)
                      ..........||+.|++||+..           ++     |++  ||+ |+. |+.... ..+.+........  +.+ .
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~-Pf~~~~-~~~~~~~i~~~~~~~~~p~~  232 (332)
T cd05623         155 DGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGET-PFYAES-LVETYGKIMNHKERFQFPAQ  232 (332)
T ss_pred             CCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCC-CCCCCC-HHHHHHHHhCCCccccCCCc
Confidence            4333334457899998888542           22     888  888 544 443322 2222221111111  111 1


Q ss_pred             chHHHHHHHHHHhHhcCCCCCC--CC-HHHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVD--RP-MVDVAKK  283 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~--RP-~~el~~~  283 (292)
                      ...++..+.+++.+|+..+|++  || +.++++.
T Consensus       233 ~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         233 VTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             cccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            1245778999999988665554  67 8888765

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.97  E-value=5.6e-30  Score=224.56  Aligned_cols=223  Identities=16%  Similarity=0.196  Sum_probs=163.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC------cceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ------IPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~l  109 (292)
                      +|+||.||++....       .++.||+|.+...  .......+.+|+.+++.++||||+++++++....      ..++
T Consensus        27 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~l   99 (355)
T cd07874          27 SGAQGIVCAAYDAV-------LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYL   99 (355)
T ss_pred             ecCCEEEEEEEecC-------CCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccccceeEE
Confidence            89999999999865       8899999998753  2234467889999999999999999999886532      4689


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ||||+++ +|.+.+         ...+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++
T Consensus       100 v~e~~~~-~l~~~~---------~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDikp~Nill~~~~~~kl~Dfg~~  166 (355)
T cd07874         100 VMELMDA-NLCQVI---------QMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA  166 (355)
T ss_pred             Ehhhhcc-cHHHHH---------hhcCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEECCCCCEEEeeCccc
Confidence            9999985 787777         234788899999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchh------------------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLN------------------  237 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~------------------  237 (292)
                      .......  ......|+..|++|+....      +     |++  +|+ |+. ++.......                  
T Consensus       167 ~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~  243 (355)
T cd07874         167 RTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKI-LFPGRDYIDQWNKVIEQLGTPCPEFMK  243 (355)
T ss_pred             ccCCCcc--ccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            7654322  1233567888988876432      2     888  887 543 221111000                  


Q ss_pred             -------hhcccc--cc--------cC--CCC--CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          238 -------EIIDPL--IM--------GD--RSC--SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       238 -------~~~~~~--~~--------~~--~~~--~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                             ..+...  ..        ..  .+.  .........+.+|+.+||+.||++|| +.|+++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         244 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             hhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence                   000000  00        00  000  00012245788999999999999999 9999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.97  E-value=1.2e-29  Score=211.99  Aligned_cols=227  Identities=18%  Similarity=0.218  Sum_probs=175.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv~e~  113 (292)
                      +|++|.||+|....       +++.|++|.+.....  ...+.+.+|+..+++++|+||+++++.+...  ...++++||
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~   82 (260)
T cd06606          10 RGSFGSVYLALDKD-------TGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEY   82 (260)
T ss_pred             ecCceEEEEEEECC-------CCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEe
Confidence            79999999999975       789999999876532  4567899999999999999999999999987  789999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++++|.+++.       ....+++..+..++.+++.||.|||   +.+++|+||+|+||+++.++.++|+|||.+....
T Consensus        83 ~~~~~L~~~~~-------~~~~~~~~~~~~~~~~l~~~l~~lh---~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~  152 (260)
T cd06606          83 VSGGSLSSLLK-------KFGKLPEPVIRKYTRQILEGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLG  152 (260)
T ss_pred             cCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEcccccEEecc
Confidence            99999999993       2337899999999999999999999   8999999999999999999999999999998776


Q ss_pred             CCCcc-chhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          194 EGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       194 ~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ..... ......++..|.+|+...      ++     |++  +++ |.. |+......................+...+.
T Consensus       153 ~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (260)
T cd06606         153 DIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKP-PWSELGNPMAALYKIGSSGEPPEIPEHLSE  231 (260)
T ss_pred             cccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCC-CCCCCCchHHHHHhccccCCCcCCCcccCH
Confidence            54321 122345677777776543      22     877  777 543 332222111111111111111111235578


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+.+++.+||+.||++|| +.+++.
T Consensus       232 ~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         232 EAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             HHHHHHHHhCcCChhhCCCHHHHhh
Confidence            999999999999999999 999886

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1e-29  Score=219.39  Aligned_cols=232  Identities=16%  Similarity=0.191  Sum_probs=173.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.+.....   .....+.+|+.+++.++|+||+++++.+......++++||+
T Consensus        11 ~g~~g~vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   83 (316)
T cd05574          11 KGDVGRVFLVRLKG-------TGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMDYC   83 (316)
T ss_pred             CCccEEEEEEEEcC-------CCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEEec
Confidence            79999999999864       789999999875432   24567889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+++|.+++..     .....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.++|+|||++.....
T Consensus        84 ~~~~L~~~~~~-----~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  155 (316)
T cd05574          84 PGGELFRLLQR-----QPGKCLSEEVARFYAAEVLLALEYLH---LLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDV  155 (316)
T ss_pred             CCCCHHHHHHh-----CCCCccCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChHHeEEcCCCCEEEeecchhhcccc
Confidence            99999999832     12457899999999999999999999   89999999999999999999999999999875532


Q ss_pred             CCcc----------------------------chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhh
Q 044211          195 GETH----------------------------ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFE  232 (292)
Q Consensus       195 ~~~~----------------------------~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~  232 (292)
                      ....                            ......|+..|++|+.....           |++  +|+ |.. |+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~-pf~~  234 (316)
T cd05574         156 EPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTT-PFKG  234 (316)
T ss_pred             cccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCC-CCCC
Confidence            1110                            11224567788777754322           888  888 554 3322


Q ss_pred             ccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          233 EDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      ... ...+..........+.....+..+.+++.+||+.||++|| +...++.+..
T Consensus       235 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         235 SNR-DETFSNILKKEVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             Cch-HHHHHHHhcCCccCCCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHc
Confidence            221 1111111222222222123577899999999999999999 7666555543

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.97  E-value=1.1e-29  Score=213.69  Aligned_cols=226  Identities=16%  Similarity=0.191  Sum_probs=167.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-----cchHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-----PRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv  110 (292)
                      +|+||.||.|....       ++..||+|.+....     ......+.+|+.++++++||||+++++++...  ..++++
T Consensus        12 ~g~~g~v~~~~~~~-------~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v   84 (265)
T cd06652          12 QGAFGRVYLCYDAD-------TGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIF   84 (265)
T ss_pred             cCCceEEEEEEEcC-------CCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEE
Confidence            89999999999865       78999999875321     12345788899999999999999999988763  457799


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +||+++++|.+++.       ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++.
T Consensus        85 ~e~~~~~~L~~~l~-------~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~  154 (265)
T cd06652          85 MEHMPGGSIKDQLK-------SYGALTENVTRKYTRQILEGVSYLH---SNMIVHRDIKGANILRDSVGNVKLGDFGASK  154 (265)
T ss_pred             EEecCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEecCCCCEEECcCcccc
Confidence            99999999999983       2345788899999999999999999   8999999999999999999999999999987


Q ss_pred             ccCCCCcc--chhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCch
Q 044211          191 SIPEGETH--ISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       191 ~~~~~~~~--~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
                      ........  ......|+..|++|+....      +     |++  +|+ |+. |+........... .......+..+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~-p~~~~~~~~~~~~-~~~~~~~~~~~~  232 (265)
T cd06652         155 RLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKP-PWAEFEAMAAIFK-IATQPTNPVLPP  232 (265)
T ss_pred             ccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCC-CCCccchHHHHHH-HhcCCCCCCCch
Confidence            65432111  1123457778877775432      2     888  888 544 3322222222211 111111111223


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .....+.+++.+||. +|++|| +.+|++.
T Consensus       233 ~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~  261 (265)
T cd06652         233 HVSDHCRDFLKRIFV-EAKLRPSADELLRH  261 (265)
T ss_pred             hhCHHHHHHHHHHhc-ChhhCCCHHHHhcC
Confidence            556778899999995 999999 9998753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=4.4e-30  Score=225.24  Aligned_cols=162  Identities=18%  Similarity=0.226  Sum_probs=134.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|....       +++.||+|.....      ....|+.++++++|+||+++++++...+..++|+|++. +
T Consensus        76 ~G~~g~Vy~~~~~~-------~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~  141 (357)
T PHA03209         76 PGSEGRVFVATKPG-------QPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS-S  141 (357)
T ss_pred             CCCCeEEEEEEECC-------CCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC-C
Confidence            89999999999875       7789999985433      23468999999999999999999999999999999997 5


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.      .....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++....... 
T Consensus       142 ~l~~~l~------~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-  211 (357)
T PHA03209        142 DLYTYLT------KRSRPLPIDQALIIEKQILEGLRYLH---AQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAP-  211 (357)
T ss_pred             cHHHHHH------hccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEecCccccccccCc-
Confidence            8988883      23456899999999999999999999   8999999999999999999999999999987543221 


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEc
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLL  224 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~  224 (292)
                       ......||..|++|++....           |++  ||+
T Consensus       212 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell  250 (357)
T PHA03209        212 -AFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEML  250 (357)
T ss_pred             -ccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHH
Confidence             12235688889888765432           888  777

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.96  E-value=8.4e-30  Score=213.17  Aligned_cols=228  Identities=19%  Similarity=0.265  Sum_probs=171.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|+||.||+|....       ++..||+|.+...  .....+.+.+|+.+++.++|+||+++++.+......++++||+.
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~   82 (257)
T cd08225          10 EGSFGKIYLAKAKS-------DSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCD   82 (257)
T ss_pred             CCCcceEEEEEEcC-------CCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCC
Confidence            79999999999975       7899999998653  22334568899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC-ceEEeecccccccCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFSISIPE  194 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~-~~kl~Dfg~a~~~~~  194 (292)
                      +++|.+++...     ....+++..+..++.|++.||.|||   ..+++|+||+|+||++++++ .++|+|||.+.....
T Consensus        83 ~~~L~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~  154 (257)
T cd08225          83 GGDLMKRINRQ-----RGVLFSEDQILSWFVQISLGLKHIH---DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLND  154 (257)
T ss_pred             CCcHHHHHHhc-----cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEcCCCCeEEecccccchhccC
Confidence            99999999421     2345789999999999999999999   89999999999999999875 579999999977653


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      .. .......|+..|.+|++...      +     |++  +++....|+... .....+.....+..+... ...+..+.
T Consensus       155 ~~-~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~  231 (257)
T cd08225         155 SM-ELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGN-NLHQLVLKICQGYFAPIS-PNFSRDLR  231 (257)
T ss_pred             Cc-ccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCc-cHHHHHHHHhcccCCCCC-CCCCHHHH
Confidence            32 12223457777877775432      2     888  887333333222 112122222222111111 24456899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +++.+||+.+|++|| +.++++.
T Consensus       232 ~~i~~~l~~~p~~Rpt~~~ll~~  254 (257)
T cd08225         232 SLISQLFKVSPRDRPSITSILKR  254 (257)
T ss_pred             HHHHHHhccChhhCcCHHHHhhC
Confidence            999999999999999 9999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.96  E-value=2.1e-29  Score=215.13  Aligned_cols=226  Identities=17%  Similarity=0.158  Sum_probs=165.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv~e~  113 (292)
                      .|+||.||+|.+..       +++.|++|.++...  ......+.+|+.++++++||||+++++++...  +..++|+||
T Consensus        15 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~   87 (293)
T cd07843          15 EGTYGVVYRARDKK-------TGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEY   87 (293)
T ss_pred             CCCCeEEEEEEECC-------CCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehh
Confidence            89999999999975       78999999987542  22334577899999999999999999999877  789999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +. ++|.+++..+      ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++....
T Consensus        88 ~~-~~L~~~~~~~------~~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~  157 (293)
T cd07843          88 VE-HDLKSLMETM------KQPFLQSEVKCLMLQLLSGVAHLH---DNWILHRDLKTSNLLLNNRGILKICDFGLAREYG  157 (293)
T ss_pred             cC-cCHHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCcEEEeecCceeecc
Confidence            98 5999988422      336899999999999999999999   8899999999999999999999999999998765


Q ss_pred             CCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchh---hh----------------
Q 044211          194 EGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLN---EI----------------  239 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~---~~----------------  239 (292)
                      .... ......++..|++|+....       +     |++  +|+ |.. ++.......   .+                
T Consensus       158 ~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (293)
T cd07843         158 SPLK-PYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKP-LFPGKSEIDQLNKIFKLLGTPTEKIWPGFS  235 (293)
T ss_pred             CCcc-ccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCCchHHHHHhh
Confidence            4321 1223446777877775432       2     877  777 543 221110000   00                


Q ss_pred             -ccccc---------ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          240 -IDPLI---------MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       240 -~~~~~---------~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                       +....         .......+....++.+.+++.+||+.||++|| +.|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         236 ELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             ccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence             00000         00000000001366789999999999999999 999875

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=3.7e-30  Score=239.95  Aligned_cols=225  Identities=19%  Similarity=0.223  Sum_probs=165.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC-----------
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ-----------  105 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-----------  105 (292)
                      +||||.||+++.+-       +|+.||||++... +......+.+|+.+|++|+|||||+++..|....           
T Consensus       489 kGGFG~VvkVRNKl-------DGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~~ei~~~  561 (1351)
T KOG1035|consen  489 KGGFGSVVKVRNKL-------DGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTVLEIVAS  561 (1351)
T ss_pred             CCCCceEEEEeecc-------cchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCcccccccccc
Confidence            99999999999986       9999999998654 4445678999999999999999999987653210           


Q ss_pred             --------------------------------------------------------------------------------
Q 044211          106 --------------------------------------------------------------------------------  105 (292)
Q Consensus       106 --------------------------------------------------------------------------------  105 (292)
                                                                                                      
T Consensus       562 ~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~e~~~~  641 (1351)
T KOG1035|consen  562 DSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDSEGSVI  641 (1351)
T ss_pred             chhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccccCCccc
Confidence                                                                                            


Q ss_pred             ----------------------------cceEEEeccCCCChhHHhhhhCCCCCCCCCC-CHHHHHHHHHHHHHHHHHhh
Q 044211          106 ----------------------------IPILVFEYINCGSLADRIRIHHTPQPQHEPL-LLTHRLKIAMDIANAIAYLH  156 (292)
Q Consensus       106 ----------------------------~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l-~~~~~~~i~~~i~~~l~~lh  156 (292)
                                                  .+||-||||+..++.+++++..       .. .....++++.+|+.||.|+|
T Consensus       642 ~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~-------~~~~~d~~wrLFreIlEGLaYIH  714 (1351)
T KOG1035|consen  642 LDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNH-------FNSQRDEAWRLFREILEGLAYIH  714 (1351)
T ss_pred             cCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcc-------cchhhHHHHHHHHHHHHHHHHHH
Confidence                                        0156788888766666663211       11 46678999999999999999


Q ss_pred             cCCCCCcccCCCCCCceEecCCCceEEeecccccccC-----------------CCCccchhhhhcccccccccccCCC-
Q 044211          157 VGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP-----------------EGETHISELLSGLRAFDLARLNEDD-  218 (292)
Q Consensus       157 ~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~-----------------~~~~~~~~~~~g~~~y~~~~~~~~~-  218 (292)
                         +.++|||||||.||++++++.+||+|||+|....                 .......+...||.-|.+||...+. 
T Consensus       715 ---~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~  791 (1351)
T KOG1035|consen  715 ---DQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTS  791 (1351)
T ss_pred             ---hCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccc
Confidence               8999999999999999999999999999998722                 0111123567899999777766544 


Q ss_pred             -------------CeE--EEccchhhhhhccchhhhcccccccCCCCCC--chHHHHHHHHHHhHhcCCCCCCCC-HHHH
Q 044211          219 -------------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSG--NQQQLQAFAHLIFECVNESPVDRP-MVDV  280 (292)
Q Consensus       219 -------------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~li~~Cl~~dP~~RP-~~el  280 (292)
                                   |||  ||+-   ||.........+.....+..|.+.  ..+..+.-..+|.++++.||++|| +.|+
T Consensus       792 ~~~Yn~KiDmYSLGIVlFEM~y---PF~TsMERa~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eL  868 (1351)
T KOG1035|consen  792 SNKYNSKIDMYSLGIVLFEMLY---PFGTSMERASILTNLRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRPTATEL  868 (1351)
T ss_pred             cccccchhhhHHHHHHHHHHhc---cCCchHHHHHHHHhcccCCCCCCcccccccchHHHHHHHHHhcCCCccCCCHHHH
Confidence                         777  7772   122222333333333344433331  134555677899999999999999 9998


Q ss_pred             HH
Q 044211          281 AK  282 (292)
Q Consensus       281 ~~  282 (292)
                      +.
T Consensus       869 L~  870 (1351)
T KOG1035|consen  869 LN  870 (1351)
T ss_pred             hh
Confidence            75

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=4.2e-30  Score=231.23  Aligned_cols=238  Identities=20%  Similarity=0.297  Sum_probs=186.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC-CCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE-SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||+||+|.|..   .+..-+-+||||.+.. .......++++|.-.|.+|+|||+++++|+|..+. +.+|++|++.
T Consensus       706 sgAfGtV~kGiw~P---ege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq~mP~  781 (1177)
T KOG1025|consen  706 SGAFGTVYKGIWIP---EGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQLMPL  781 (1177)
T ss_pred             cccceeEEeeeEec---CCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHHhccc
Confidence            99999999999952   2333445799999865 45556688999999999999999999999998765 7899999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.++++.|      +..+.....+.|.-|||+||.|||   .++++||||..+|+|+.+...+||.|||+++....+.
T Consensus       782 G~LlDyvr~h------r~~igsq~lLnw~~QIAkgM~YLe---~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~  852 (1177)
T KOG1025|consen  782 GCLLDYVREH------RDNIGSQDLLNWCYQIAKGMKYLE---EQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDE  852 (1177)
T ss_pred             chHHHHHHHh------hccccHHHHHHHHHHHHHHHHHHH---hcchhhhhhhhhheeecCCCeEEEEecchhhccCccc
Confidence            9999999755      456888899999999999999999   9999999999999999999999999999999886554


Q ss_pred             ccchhhhhc--cccc------ccccccCCC-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          197 THISELLSG--LRAF------DLARLNEDD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       197 ~~~~~~~~g--~~~y------~~~~~~~~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      .... ...|  .+.|      ..+.++.++     ||.  |+++....++......++-+..-.+.+ .++|+-|+.+++
T Consensus       853 ~ey~-~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~geR-LsqPpiCtiDVy  930 (1177)
T KOG1025|consen  853 KEYS-APGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGER-LSQPPICTIDVY  930 (1177)
T ss_pred             cccc-ccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhcccc-CCCCCCccHHHH
Confidence            3221 1112  1222      445566666     998  888322223333344444443333443 445568999999


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          262 HLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      -++.+||..|++.|| |+++...+.++.++
T Consensus       931 ~~mvkCwmid~~~rp~fkel~~~fs~~ard  960 (1177)
T KOG1025|consen  931 MVMVKCWMIDADSRPTFKELAEEFSRMARD  960 (1177)
T ss_pred             HHHHHHhccCcccCccHHHHHHHHHHHhcC
Confidence            999999999999999 99999999887654

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.96  E-value=3e-29  Score=216.24  Aligned_cols=230  Identities=16%  Similarity=0.203  Sum_probs=166.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|+++.||.+....       +++.||+|.++..  .......+.+|+..++.++|+||+++++++...+..++++||++
T Consensus        10 ~~~~~~v~~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~   82 (314)
T cd08216          10 FEDLMIVHLAKHKP-------TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMA   82 (314)
T ss_pred             hcCCceEEEEEecC-------CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccC
Confidence            34555666665543       8999999998754  34455789999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++...     ....+++..+..++.|++.||.|||   ..+|+|+||+|+||+++.++.+||+|||.+......
T Consensus        83 ~~~l~~~l~~~-----~~~~~~~~~~~~~~~~l~~~L~~LH---~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~  154 (314)
T cd08216          83 YGSCEDLLKTH-----FPEGLPELAIAFILKDVLNALDYIH---SKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKH  154 (314)
T ss_pred             CCCHHHHHHHh-----cccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCcceEEEecCCceEEecCccceeeccc
Confidence            99999999432     2345889999999999999999999   899999999999999999999999999998765432


Q ss_pred             Ccc------chhhhhcccccccccccC--------CC-----CeE--EEc-cchhhhhhccchhhhccc-----------
Q 044211          196 ETH------ISELLSGLRAFDLARLNE--------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDP-----------  242 (292)
Q Consensus       196 ~~~------~~~~~~g~~~y~~~~~~~--------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~-----------  242 (292)
                      ...      ......++..|++|++..        ++     |++  ||+ |.. |+..........+.           
T Consensus       155 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~  233 (314)
T cd08216         155 GKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHV-PFKDMPATQMLLEKVRGTVPCLLDK  233 (314)
T ss_pred             cccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHhccCcccccc
Confidence            211      112234566777776532        22     888  887 544 33221111100000           


Q ss_pred             --------------------ccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          243 --------------------LIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       243 --------------------~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                          ......+..........+.+++.+||+.||++|| +.++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  295 (314)
T cd08216         234 STYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNH  295 (314)
T ss_pred             CchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcC
Confidence                                0000001111123456788999999999999999 9999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.96  E-value=3.5e-30  Score=218.83  Aligned_cols=226  Identities=13%  Similarity=0.116  Sum_probs=167.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +|+.||+|.++..  .......+.+|+.++++++|+||+++++++......++++||+.
T Consensus        10 ~g~~~~vy~~~~~~-------~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   82 (284)
T cd07839          10 EGTYGTVFKAKNRE-------THEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCD   82 (284)
T ss_pred             ccCCeEEEEEEECC-------CCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCC
Confidence            79999999999976       8899999998643  22233567889999999999999999999999999999999998


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                       ++|.+++.      .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++......
T Consensus        83 -~~l~~~~~------~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~  152 (284)
T cd07839          83 -QDLKKYFD------SCNGDIDPEIVKSFMFQLLKGLAFCH---SHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIP  152 (284)
T ss_pred             -CCHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEcCCCcEEECccchhhccCCC
Confidence             58888773      12456899999999999999999999   899999999999999999999999999999765432


Q ss_pred             CccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhhhcc-------------------
Q 044211          196 ETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNEIID-------------------  241 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~-------------------  241 (292)
                      .. ......++..|++||...       ++     |++  +|+ |+.+++... .....+.                   
T Consensus       153 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (284)
T cd07839         153 VR-CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN-DVDDQLKRIFRLLGTPTEESWPGVSK  230 (284)
T ss_pred             CC-CcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCC-CHHHHHHHHHHHhCCCChHHhHHhhh
Confidence            21 112234677887777532       22     888  888 655332211 1111000                   


Q ss_pred             ---cccccCCCCCC-----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 ---PLIMGDRSCSG-----NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 ---~~~~~~~~~~~-----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                         .......+...     ....+..+.+++.+||+.||.+|| +.+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         231 LPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             cccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence               00000000000     013456888999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.96  E-value=2.9e-29  Score=213.65  Aligned_cols=229  Identities=19%  Similarity=0.249  Sum_probs=168.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv~e~~  114 (292)
                      .|++|.||++....       +++.||+|.+.... .....++.+|++++++++||||+++++++..  .+.+++||||+
T Consensus        11 ~g~~~~v~~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~   83 (287)
T cd06621          11 EGAGGSVTKCRLKN-------TGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYC   83 (287)
T ss_pred             cCCceEEEEEEECC-------CCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEec
Confidence            79999999999965       78999999987542 2345679999999999999999999999865  34689999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.+++....   .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++.....
T Consensus        84 ~~~~L~~~l~~~~---~~~~~l~~~~~~~i~~~i~~~L~~lH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~  157 (287)
T cd06621          84 EGGSLDSIYKKVK---KRGGRIGEKVLGKIAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVN  157 (287)
T ss_pred             CCCCHHHHHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecCCeEEEeeccccccccc
Confidence            9999999874322   13456888999999999999999999   89999999999999999999999999999875543


Q ss_pred             CCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhcc----chhhhcccccccCCCC-----C
Q 044211          195 GETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEED----RLNEIIDPLIMGDRSC-----S  251 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~----~~~~~~~~~~~~~~~~-----~  251 (292)
                      ...   ....++..|.+|+...      ++     |++  +|+ |.. |+....    ...+..........+.     .
T Consensus       158 ~~~---~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (287)
T cd06621         158 SLA---GTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRF-PFPPEGEPPLGPIELLSYIVNMPNPELKDEPG  233 (287)
T ss_pred             ccc---ccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCC-CCCcccCCCCChHHHHHHHhcCCchhhccCCC
Confidence            221   1234566676665432      22     888  888 543 332221    1111111111101000     0


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .....++.+.+++.+||+.||++|| +.|+++.
T Consensus       234 ~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~  266 (287)
T cd06621         234 NGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEH  266 (287)
T ss_pred             CCCchHHHHHHHHHHHcCCCcccCCCHHHHHhC
Confidence            0013467899999999999999999 9999873

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.96  E-value=7.1e-30  Score=217.22  Aligned_cols=227  Identities=20%  Similarity=0.217  Sum_probs=169.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +++.||+|.++..  .......+.+|++++++++|+||+++++++...+..++++||+.
T Consensus        11 ~g~~~~v~~~~~~~-------~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~   83 (288)
T cd07833          11 EGAYGVVLKCRNKA-------TGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVE   83 (288)
T ss_pred             ccCCeeEEEEEeCC-------CCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEecCC
Confidence            79999999999875       7889999998653  33345678999999999999999999999999899999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      ++.+..+.       .....+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.+||+|||++......
T Consensus        84 ~~~l~~~~-------~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~  153 (288)
T cd07833          84 RTLLELLE-------ASPGGLPPDAVRSYIWQLLQAIAYCH---SHNIIHRDIKPENILVSESGVLKLCDFGFARALRAR  153 (288)
T ss_pred             CCHHHHHH-------hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEEeeecccccCCC
Confidence            86666555       23455899999999999999999999   899999999999999999999999999999877654


Q ss_pred             Cccchhhhhccccccccccc-------CCC-----CeE--EEc-cchhhhhhccchhhh-----------------c--c
Q 044211          196 ETHISELLSGLRAFDLARLN-------EDD-----GYV--VLL-DHIKKYFEEDRLNEI-----------------I--D  241 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~-------~~~-----Gvi--el~-~~~~~~~~~~~~~~~-----------------~--~  241 (292)
                      .........++..|++|++.       .++     |++  +|+ |.. ++.........                 .  +
T Consensus       154 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (288)
T cd07833         154 PASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEP-LFPGDSDIDQLYLIQKCLGPLPPSHQELFSSN  232 (288)
T ss_pred             ccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhCCCCHHHhhhcccC
Confidence            43233335567778777643       222     877  777 643 22211110000                 0  0


Q ss_pred             ccccc--CCCCC--------CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 PLIMG--DRSCS--------GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 ~~~~~--~~~~~--------~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ....+  ..+..        .+..++..+.+++.+||+.+|++|| +.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         233 PRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             ccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence            00000  00000        0012367899999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.96  E-value=9.8e-30  Score=216.06  Aligned_cols=227  Identities=15%  Similarity=0.137  Sum_probs=166.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|+||.||+|....       +++.||+|.++..  .......+.+|+.++++++||||+++++++...+..++|+||+.
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~   82 (284)
T cd07860          10 EGTYGVVYKARNKL-------TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH   82 (284)
T ss_pred             CCCceEEEEEEECC-------CCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeeccc
Confidence            79999999999865       8899999998643  22234578899999999999999999999999999999999997


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                       ++|..++..     .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++......
T Consensus        83 -~~l~~~~~~-----~~~~~l~~~~~~~~~~~i~~~l~~lh---~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~  153 (284)
T cd07860          83 -QDLKKFMDA-----SPLSGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP  153 (284)
T ss_pred             -cCHHHHHHh-----CCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEeeccchhhcccC
Confidence             689888831     23456899999999999999999999   899999999999999999999999999998765432


Q ss_pred             CccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhhhcccc-------------c---
Q 044211          196 ETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPL-------------I---  244 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~-------------~---  244 (292)
                      .. ......++..|.+|+...       ++     |++  +|+ |+. ++.............             .   
T Consensus       154 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (284)
T cd07860         154 VR-TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRA-LFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSL  231 (284)
T ss_pred             cc-ccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHhCCCChhhhhhhhHH
Confidence            21 112234566787777432       22     888  888 654 222211111100000             0   


Q ss_pred             ---ccCCCCC--C-----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          245 ---MGDRSCS--G-----NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       245 ---~~~~~~~--~-----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                         ....+..  .     ....++.+.+++.+||+.||++|| +.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         232 PDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             HHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence               0000000  0     012345788999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.96  E-value=9.3e-30  Score=203.38  Aligned_cols=241  Identities=15%  Similarity=0.187  Sum_probs=186.1

Q ss_pred             cccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcC-CCCccceeeee
Q 044211           25 SFCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMI-HRCIFKLIGCC  101 (292)
Q Consensus        25 ~~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~  101 (292)
                      ..+.++++..... .|+.|.|+++.++.       ++..+|||.+... ..+..++++..++++.+-. .|.||+.+|+|
T Consensus        88 ~~dindl~~l~dlGsGtcG~V~k~~~rs-------~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyF  160 (391)
T KOG0983|consen   88 QADINDLENLGDLGSGTCGQVWKMRFRS-------TGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYF  160 (391)
T ss_pred             ccChHHhhhHHhhcCCCccceEEEEEcc-------cceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEE
Confidence            4556667666665 89999999999987       8999999998765 3455678888888887764 89999999999


Q ss_pred             ecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCce
Q 044211          102 LETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVA  181 (292)
Q Consensus       102 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~  181 (292)
                      ..+...++.||.+.- -++.++++.      ..++++.-+-++.-.+++||.||-+  .++|+|||+||+|||+|+.|++
T Consensus       161 i~n~dV~IcMelMs~-C~ekLlkri------k~piPE~ilGk~tva~v~AL~YLKe--KH~viHRDvKPSNILlDe~Gni  231 (391)
T KOG0983|consen  161 ITNTDVFICMELMST-CAEKLLKRI------KGPIPERILGKMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGNI  231 (391)
T ss_pred             eeCchHHHHHHHHHH-HHHHHHHHh------cCCchHHhhhhhHHHHHHHHHHHHH--hcceeecccCccceEEccCCCE
Confidence            999999999999863 455555322      4568888888999999999999997  6799999999999999999999


Q ss_pred             EEeecccccccCCCCccchhhhhcccccccccccC-C--------C-----CeE--EEccchhhhhhccchhhhcccccc
Q 044211          182 KLFDFSFSISIPEGETHISELLSGLRAFDLARLNE-D--------D-----GYV--VLLDHIKKYFEEDRLNEIIDPLIM  245 (292)
Q Consensus       182 kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~-~--------~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~  245 (292)
                      ||||||++-.+...  .+.+...|.+.|++||-.+ +        +     |+.  ||.+...|+.....-.+.+-..+.
T Consensus       232 KlCDFGIsGrlvdS--kAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln  309 (391)
T KOG0983|consen  232 KLCDFGISGRLVDS--KAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLN  309 (391)
T ss_pred             Eeecccccceeecc--cccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHh
Confidence            99999999877543  3345567899997776443 2        1     888  888445555554433444444444


Q ss_pred             cCCCCCCc-hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          246 GDRSCSGN-QQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       246 ~~~~~~~~-~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+|..+. ...++.+.+++..||.+|+.+|| -.++++.
T Consensus       310 ~ePP~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  310 EEPPLLPGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLEH  349 (391)
T ss_pred             cCCCCCCcccCcCHHHHHHHHHHhhcCcccCcchHHHhcC
Confidence            44433221 34788999999999999999999 9988764

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.96  E-value=4e-29  Score=215.77  Aligned_cols=179  Identities=18%  Similarity=0.189  Sum_probs=137.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..     ..+++.||+|.+....  ....+.+|+.++++++||||+++++++..  ....++++||+.
T Consensus        11 ~G~~g~Vy~~~~~~-----~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07868          11 RGTYGHVYKAKRKD-----GKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE   83 (317)
T ss_pred             cCCCeEEEEEEEcc-----CCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence            89999999998631     0156789999987542  23457789999999999999999999864  445789999997


Q ss_pred             CCChhHHhhhhCCC--CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe----cCCCceEEeecccc
Q 044211          116 CGSLADRIRIHHTP--QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF----NEENVAKLFDFSFS  189 (292)
Q Consensus       116 ~gsL~~~l~~~~~~--~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili----~~~~~~kl~Dfg~a  189 (292)
                       ++|.+++..+...  ......+++..+..++.|++.||.|||   +.+++||||||+|||+    +.++.+||+|||++
T Consensus        84 -~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a  159 (317)
T cd07868          84 -HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFA  159 (317)
T ss_pred             -CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEecCCCCcCcEEEeecCce
Confidence             5998888533211  122346899999999999999999999   8999999999999999    45678999999999


Q ss_pred             cccCCCCcc--chhhhhcccccccccccCC-------C-----CeE--EEc-cch
Q 044211          190 ISIPEGETH--ISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHI  227 (292)
Q Consensus       190 ~~~~~~~~~--~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~  227 (292)
                      .........  ......||+.|++||+...       +     |++  +|+ |+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~  214 (317)
T cd07868         160 RLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEP  214 (317)
T ss_pred             eccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCC
Confidence            876543221  1234567889988885422       1     888  888 653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.2e-29  Score=212.88  Aligned_cols=223  Identities=17%  Similarity=0.136  Sum_probs=163.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHHHH-HhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIVYA-SQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l-~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      .|+||.||+|....       +++.||+|.+.....   .....+..|...+ ...+|+|++++++++...+..++++||
T Consensus         6 ~g~~~~v~~a~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~   78 (260)
T cd05611           6 KGAFGSVYLAKKRS-------TGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEY   78 (260)
T ss_pred             cCCCeeEEEEEecC-------CCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEec
Confidence            79999999999865       789999999865422   1223344555444 345899999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++....
T Consensus        79 ~~~~~L~~~l~-------~~~~~~~~~~~~i~~qi~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  148 (260)
T cd05611          79 LNGGDCASLIK-------TLGGLPEDWAKQYIAEVVLGVEDLH---QRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGL  148 (260)
T ss_pred             cCCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEeecccceecc
Confidence            99999999993       3346899999999999999999999   8999999999999999999999999999987553


Q ss_pred             CCCccchhhhhccccccccccc------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccC--CCCCCchHHH
Q 044211          194 EGETHISELLSGLRAFDLARLN------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD--RSCSGNQQQL  257 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  257 (292)
                      ..     ....++..|.+|+..      .++     |++  +|+ |.. |+... .....+.......  .+......++
T Consensus       149 ~~-----~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~-p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  221 (260)
T cd05611         149 EN-----KKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYP-PFHAE-TPDAVFDNILSRRINWPEEVKEFCS  221 (260)
T ss_pred             cc-----ccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCC-CCCCC-CHHHHHHHHHhcccCCCCcccccCC
Confidence            31     223466677666543      223     888  777 543 33221 1122211111111  1111112467


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      ..+.+++.+||+.||++|| +.++.+.|
T Consensus       222 ~~~~~~i~~~l~~~p~~R~~~~~~~~~l  249 (260)
T cd05611         222 PEAVDLINRLLCMDPAKRLGANGYQEIK  249 (260)
T ss_pred             HHHHHHHHHHccCCHHHccCCCcHHHHH
Confidence            7899999999999999999 86555544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=6.3e-30  Score=223.19  Aligned_cols=222  Identities=14%  Similarity=0.159  Sum_probs=163.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecC------CcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLET------QIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~------~~~~l  109 (292)
                      .|+||.||+|....       +++.||+|.+....  ......+.+|+.++++++||||+++++++...      ...++
T Consensus        25 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~   97 (343)
T cd07878          25 SGAYGSVCSAYDTR-------LRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYL   97 (343)
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEEE
Confidence            89999999999865       88899999987532  22345678999999999999999999988643      34688


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ++|++ +++|.+++        ....+++..+..++.|++.||.|||   ..+++||||||+||+++.++.+||+|||++
T Consensus        98 ~~~~~-~~~l~~~~--------~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~  165 (343)
T cd07878          98 VTNLM-GADLNNIV--------KCQKLSDEHVQFLIYQLLRGLKYIH---SAGIIHRDLKPSNVAVNEDCELRILDFGLA  165 (343)
T ss_pred             EeecC-CCCHHHHH--------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCChhhEEECCCCCEEEcCCccc
Confidence            99988 57998888        2346899999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchh---hh-----------c
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLN---EI-----------I  240 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~---~~-----------~  240 (292)
                      .......    ....|+..|++|++...       +     |++  +|+ |+. ++.......   ..           .
T Consensus       166 ~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~  240 (343)
T cd07878         166 RQADDEM----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKA-LFPGNDYIDQLKRIMEVVGTPSPEVL  240 (343)
T ss_pred             eecCCCc----CCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence            8664322    23467888988876422       2     888  888 543 222111000   00           0


Q ss_pred             ccc--------cccCCCCCC------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          241 DPL--------IMGDRSCSG------NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       241 ~~~--------~~~~~~~~~------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ...        +...+..+.      .....+.+.+|+.+||+.||++|| +.|++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         241 KKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             HhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            000        000000000      001234678999999999999999 9999864

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1.6e-29  Score=224.38  Aligned_cols=224  Identities=21%  Similarity=0.185  Sum_probs=166.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||++....     ...+..||+|.+...     ....+|+.++++++||||+++++++......+++||++. +
T Consensus       102 ~G~~g~Vy~~~~~~-----~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~  170 (392)
T PHA03207        102 PGSEGEVFVCTKHG-----DEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK-C  170 (392)
T ss_pred             CCCCeEEEEEEEcC-----CccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC-C
Confidence            89999999997531     115678999987654     234589999999999999999999999889999999997 5


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.       ....+++..++.++.|++.||.|||   ..+|+||||||+|||++.++.++|+|||++........
T Consensus       171 ~l~~~l~-------~~~~l~~~~~~~i~~ql~~aL~~LH---~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~  240 (392)
T PHA03207        171 DLFTYVD-------RSGPLPLEQAITIQRRLLEALAYLH---GRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPD  240 (392)
T ss_pred             CHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEccCccccccCcccc
Confidence            8988882       3457899999999999999999999   89999999999999999999999999999976654332


Q ss_pred             c-chhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccc------hhhhc----------------
Q 044211          198 H-ISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDR------LNEII----------------  240 (292)
Q Consensus       198 ~-~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~------~~~~~----------------  240 (292)
                      . ......||..|++|++...      +     |++  ||+ |+.+ ++....      +..++                
T Consensus       241 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~p-f~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~  319 (392)
T PHA03207        241 TPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVT-LFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGST  319 (392)
T ss_pred             cccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCC-CCCCCCCCcHHHHHHHHHHhccCccccCCccch
Confidence            2 2234568999988876542      2     888  888 6543 322110      00000                


Q ss_pred             ------c---cccccCCCCCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          241 ------D---PLIMGDRSCSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       241 ------~---~~~~~~~~~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                            .   .........+.   ....+..+.++|.+||..||++|| +.|++..
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        320 NLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             hHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence                  0   00000001100   012356788999999999999999 9998865

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.96  E-value=4e-29  Score=214.95  Aligned_cols=223  Identities=20%  Similarity=0.305  Sum_probs=169.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|+||.||+|....       +++.||+|.+...   ......++.+|+.+++.++|+|++++++++......++|+||+
T Consensus        25 ~g~~g~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   97 (308)
T cd06634          25 HGSFGAVYFARDVR-------NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYC   97 (308)
T ss_pred             eCCCEEEEEEEEcC-------CCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEcc
Confidence            89999999999865       7889999998642   2234457889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      . |++.+.+..      ....+++..+..++.|++.|+.|||   ..+++|+||+|+||+++.++.++|+|||++.....
T Consensus        98 ~-~~l~~~~~~------~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  167 (308)
T cd06634          98 L-GSASDLLEV------HKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  167 (308)
T ss_pred             C-CCHHHHHHH------cCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHhEEECCCCcEEECCcccceeecC
Confidence            7 688887731      2345889999999999999999999   89999999999999999999999999999876543


Q ss_pred             CCccchhhhhccccccccccc---------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLN---------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~---------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      .     ....++..|.+|+..         .++     |++  +|+ |.. |+.......... .......+.......+
T Consensus       168 ~-----~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~-p~~~~~~~~~~~-~~~~~~~~~~~~~~~~  240 (308)
T cd06634         168 A-----NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP-PLFNMNAMSALY-HIAQNESPALQSGHWS  240 (308)
T ss_pred             c-----ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCC-CCccccHHHHHH-HHhhcCCCCcCccccc
Confidence            2     223567778777652         122     888  877 543 333222111111 1111222222223566


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      ..+.++|.+||+.+|++|| +.+++...
T Consensus       241 ~~~~~li~~cl~~~P~~Rp~~~~ll~~~  268 (308)
T cd06634         241 EYFRNFVDSCLQKIPQDRPTSEVLLKHR  268 (308)
T ss_pred             HHHHHHHHHHhhCCcccCCCHHHHhhCc
Confidence            7899999999999999999 99988764

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.96  E-value=1.7e-29  Score=222.28  Aligned_cols=222  Identities=16%  Similarity=0.193  Sum_probs=163.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecC------CcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET------QIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~------~~~~l  109 (292)
                      +|+||.||++....       +++.||||.+...  .......+.+|+.+++.++||||+++++++...      ...++
T Consensus        34 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~~l  106 (364)
T cd07875          34 SGAQGIVCAAYDAI-------LERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYI  106 (364)
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccCeEEE
Confidence            89999999999865       8899999998753  233456788999999999999999999987643      24689


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ||||+.+ +|.+.+.         ..+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++
T Consensus       107 v~e~~~~-~l~~~~~---------~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a  173 (364)
T cd07875         107 VMELMDA-NLCQVIQ---------MELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA  173 (364)
T ss_pred             EEeCCCC-CHHHHHH---------hcCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEECCCCcEEEEeCCCc
Confidence            9999984 8888772         34788899999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccc----------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIM----------  245 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~----------  245 (292)
                      .......  ......|+..|++|+....      +     |++  +|+ |+. |+...... ..+...+.          
T Consensus       174 ~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~-pf~~~~~~-~~~~~~~~~~~~~~~~~~  249 (364)
T cd07875         174 RTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGV-LFPGTDHI-DQWNKVIEQLGTPCPEFM  249 (364)
T ss_pred             cccCCCC--cccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCC-CCCCCCHH-HHHHHHHHhcCCCCHHHH
Confidence            7654322  1233567888988876432      2     888  888 643 22211100 00000000          


Q ss_pred             -----------cCCC-----------------C--CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          246 -----------GDRS-----------------C--SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       246 -----------~~~~-----------------~--~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                 ...+                 .  .........+.+++.+||+.||.+|| +.++++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~h  318 (364)
T cd07875         250 KKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  318 (364)
T ss_pred             HhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                       0000                 0  00011235688999999999999999 9999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.96  E-value=3.1e-29  Score=209.41  Aligned_cols=228  Identities=20%  Similarity=0.284  Sum_probs=175.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|+||.||++.+..       +++.|++|.+.....  .....+.+|++.++.++|+|++++++.+......++++||++
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~   82 (258)
T cd08215          10 KGSFGKVYLVRRKS-------DGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYAD   82 (258)
T ss_pred             cCCCeEEEEEEEcC-------CCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecC
Confidence            79999999999965       789999999876433  455678999999999999999999999999899999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++....   .....+++..+..++.+++.||.|||   +.+++|+||+|+||+++.++.++|+|||++......
T Consensus        83 ~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~i~~~l~~lh---~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~  156 (258)
T cd08215          83 GGDLSQKIKKQK---KEGKPFPEEQILDWFVQLCLALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSST  156 (258)
T ss_pred             CCcHHHHHHHhh---ccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHHeEEcCCCcEEECCccceeecccC
Confidence            999999995321   12477999999999999999999999   889999999999999999999999999999876543


Q ss_pred             CccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      . .......|+..|.+|+...      ++     |++  +|+ |.. |+. ................+.. +...+..+.
T Consensus       157 ~-~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~-p~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  232 (258)
T cd08215         157 V-DLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKH-PFE-GENLLELALKILKGQYPPI-PSQYSSELR  232 (258)
T ss_pred             c-ceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCC-CCC-CCcHHHHHHHHhcCCCCCC-CCCCCHHHH
Confidence            3 2223345777787666432      22     877  777 543 322 2222222222222221111 125667899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +++.+||+.+|++|| +.+++.
T Consensus       233 ~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         233 NLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             HHHHHHcCCChhhCcCHHHHhc
Confidence            999999999999999 999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.96  E-value=1.5e-29  Score=215.37  Aligned_cols=227  Identities=14%  Similarity=0.148  Sum_probs=162.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhc---CCCCccceeeeeecC-----Ccc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQM---IHRCIFKLIGCCLET-----QIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l---~h~niv~~~~~~~~~-----~~~  107 (292)
                      +|+||.||+|....       +++.||+|.++...  ......+.+|+.+++.+   +||||+++++++...     ...
T Consensus        10 ~g~~g~v~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~   82 (288)
T cd07863          10 VGAYGTVYKARDPH-------SGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKV   82 (288)
T ss_pred             ecCCeEEEEEEECC-------CCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceE
Confidence            79999999999875       88999999986532  22234566777777765   699999999988642     347


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++++||+. ++|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||
T Consensus        83 ~lv~e~~~-~~l~~~~~~~-----~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~kl~dfg  153 (288)
T cd07863          83 TLVFEHVD-QDLRTYLDKV-----PPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGQVKLADFG  153 (288)
T ss_pred             EEEEcccc-cCHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccC
Confidence            89999998 4898888321     2345899999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccCC------C-----CeE--EEccchhhhhhccch---hhhcc----------
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLLDHIKKYFEEDRL---NEIID----------  241 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~~~~~~~~~~~~---~~~~~----------  241 (292)
                      ++........  .....|+..|++||....      +     |++  +|++..+++......   ..+..          
T Consensus       154 ~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~  231 (288)
T cd07863         154 LARIYSCQMA--LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDW  231 (288)
T ss_pred             ccccccCccc--CCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhC
Confidence            9986643221  223457888888875432      2     888  777333333221110   00000          


Q ss_pred             -c-------ccccCCCCC---CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 -P-------LIMGDRSCS---GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 -~-------~~~~~~~~~---~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                       .       ......+.+   .....+..+.+++.+||+.||++|| +.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         232 PRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             cccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence             0       000000000   0013456789999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.96  E-value=2.2e-29  Score=213.56  Aligned_cols=217  Identities=15%  Similarity=0.170  Sum_probs=159.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHHHHHh---cCCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIVYASQ---MIHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~---l~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||++....       +++.||+|.+.....   .....+.+|..+++.   ..||||+.+++.+...+..++||
T Consensus         4 ~G~~g~Vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~   76 (279)
T cd05633           4 RGGFGEVYGCRKAD-------TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFIL   76 (279)
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEE
Confidence            69999999999865       789999999865321   122234455444433   47999999999999888999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+.+|+|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||||+||++++++.++|+|||++..
T Consensus        77 e~~~~~~L~~~i~-------~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~  146 (279)
T cd05633          77 DLMNGGDLHYHLS-------QHGVFSEKEMRFYATEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACD  146 (279)
T ss_pred             ecCCCCCHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCCCCCHHHEEECCCCCEEEccCCccee
Confidence            9999999999883       3456899999999999999999999   89999999999999999999999999999875


Q ss_pred             cCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhcc-chhhhcccccccCCCCCCchH
Q 044211          192 IPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEED-RLNEIIDPLIMGDRSCSGNQQ  255 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  255 (292)
                      .....   .....|+..|++|+....       +     |++  +|+ |.. |+.... .....+..... ..+...+..
T Consensus       147 ~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~-pf~~~~~~~~~~~~~~~~-~~~~~~~~~  221 (279)
T cd05633         147 FSKKK---PHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHS-PFRQHKTKDKHEIDRMTL-TVNVELPDS  221 (279)
T ss_pred             ccccC---ccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCC-CcCCCCCcCHHHHHHHhh-cCCcCCccc
Confidence            54322   123457888877775421       2     888  888 544 332211 11111111110 111111135


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC
Q 044211          256 QLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP  276 (292)
                      .+..+.+++.+||+.||.+||
T Consensus       222 ~~~~~~~li~~~l~~~p~~R~  242 (279)
T cd05633         222 FSPELKSLLEGLLQRDVSKRL  242 (279)
T ss_pred             cCHHHHHHHHHHhcCCHHHhc
Confidence            677899999999999999998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.96  E-value=5.2e-29  Score=216.12  Aligned_cols=230  Identities=16%  Similarity=0.192  Sum_probs=167.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|+||+||.+.+..       +++.||+|.+....  ....+.+.+|+.+++.++||||+++++++...+..++|+||+.
T Consensus        10 ~~~~~~v~~a~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~   82 (328)
T cd08226          10 FCNLTSVYLARHTP-------TGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMA   82 (328)
T ss_pred             ccCceeEEEEEEcC-------CCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEeccc
Confidence            66999999999876       89999999987532  2334678899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++.+..     ...+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.++++||+.+......
T Consensus        83 ~~~l~~~l~~~~-----~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~  154 (328)
T cd08226          83 YGSANSLLKTYF-----PEGMSEALIGNILFGALRGLNYLH---QNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRN  154 (328)
T ss_pred             CCCHHHHHHhhc-----ccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhcc
Confidence            999999985332     245889999999999999999999   899999999999999999999999999865433221


Q ss_pred             Cccc------hhhhhcccccccccccC--------CC-----CeE--EEc-cchhhhhhccchhhhcccc----------
Q 044211          196 ETHI------SELLSGLRAFDLARLNE--------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPL----------  243 (292)
Q Consensus       196 ~~~~------~~~~~g~~~y~~~~~~~--------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~----------  243 (292)
                      ....      .....++..|++|++..        ++     |++  +|+ |+. |+.............          
T Consensus       155 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~  233 (328)
T cd08226         155 GQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRV-PFQDMLRTQMLLQKLKGPPYSPLDI  233 (328)
T ss_pred             CccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCC-CCCCcChHHHHHHHhcCCCCCCccc
Confidence            1111      11122345677777542        22     877  887 654 222111000000000          


Q ss_pred             ----------------------------------cccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          244 ----------------------------------IMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       244 ----------------------------------~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                                        .......+....++..+.+|+.+||+.||++|| +.|+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~  308 (328)
T cd08226         234 TTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSH  308 (328)
T ss_pred             cccchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence                                              000000111135677899999999999999999 9999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.96  E-value=5.6e-29  Score=214.52  Aligned_cols=222  Identities=21%  Similarity=0.314  Sum_probs=168.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.|++|.+....   ......+.+|+.+++.++|||++++++++......++|+||+
T Consensus        31 ~g~~g~v~~~~~~~-------~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  103 (313)
T cd06633          31 HGSFGAVYFATNSH-------TNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYC  103 (313)
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecC
Confidence            89999999999865       88999999986432   233456889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      . |++.+++.      .....+++..+..++.|++.|+.|||   ..+++|+||+|+||+++.++.++|+|||++.....
T Consensus       104 ~-~~l~~~l~------~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~  173 (313)
T cd06633         104 L-GSASDLLE------VHKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP  173 (313)
T ss_pred             C-CCHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChhhEEECCCCCEEEeecCCCcccCC
Confidence            7 58888873      22456899999999999999999999   88999999999999999999999999999864322


Q ss_pred             CCccchhhhhcccccccccccC---------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE---------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                           .....|+..|++|++..         ++     |++  +|+ |.. |+........... ......+.......+
T Consensus       174 -----~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~-p~~~~~~~~~~~~-~~~~~~~~~~~~~~~  246 (313)
T cd06633         174 -----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP-PLFNMNAMSALYH-IAQNDSPTLQSNEWT  246 (313)
T ss_pred             -----CCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCC-CCCCCChHHHHHH-HHhcCCCCCCccccC
Confidence                 12345777887777642         12     888  877 544 4333222111111 111111111112445


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+.+++.+||+.+|.+|| +.+++..
T Consensus       247 ~~l~~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         247 DSFRGFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            6799999999999999999 9998864

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.6e-29  Score=217.52  Aligned_cols=225  Identities=21%  Similarity=0.230  Sum_probs=183.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc--hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR--TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|-|++|-.|.+-       ++|..||||++.+.+-.  ....+..|++-|+-++|||||++|++......+|+|+|.-+
T Consensus        28 ~GHFAVVKLArHV-------FTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD  100 (864)
T KOG4717|consen   28 RGHFAVVKLARHV-------FTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGD  100 (864)
T ss_pred             CCceehhhhhhhh-------cccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecC
Confidence            8999999999874       39999999999876443  33578999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec-CCCceEEeecccccccCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN-EENVAKLFDFSFSISIPE  194 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~-~~~~~kl~Dfg~a~~~~~  194 (292)
                      +|+|.++|-.|      ...+.+....+++.||+.|+.|+|   +..++||||||+|+++- +-|.+||.|||++-.+.+
T Consensus       101 ~GDl~DyImKH------e~Gl~E~La~kYF~QI~~AI~YCH---qLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~P  171 (864)
T KOG4717|consen  101 GGDLFDYIMKH------EEGLNEDLAKKYFAQIVHAISYCH---QLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQP  171 (864)
T ss_pred             CchHHHHHHhh------hccccHHHHHHHHHHHHHHHHHHh---hhhhhcccCCcceeEEeeecCceEeeeccccccCCC
Confidence            99999999544      456899999999999999999999   99999999999998776 668999999999988866


Q ss_pred             CCccchhhhhcccccccccccCCC------------CeE-EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD------------GYV-VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi-el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      +..  ....+|...|.+|++.-.-            ||| .|+ ...+||-+.... +.+-..+...+..|  +....++
T Consensus       172 G~k--L~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDS-ETLTmImDCKYtvP--shvS~eC  246 (864)
T KOG4717|consen  172 GKK--LTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDS-ETLTMIMDCKYTVP--SHVSKEC  246 (864)
T ss_pred             cch--hhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccch-hhhhhhhcccccCc--hhhhHHH
Confidence            543  4567889999776654322            999 888 666666543322 22233344444444  3889999


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+||..||..||.+|. ..||...
T Consensus       247 rdLI~sMLvRdPkkRAslEeI~s~  270 (864)
T KOG4717|consen  247 RDLIQSMLVRDPKKRASLEEIVST  270 (864)
T ss_pred             HHHHHHHHhcCchhhccHHHHhcc
Confidence            9999999999999999 9888753

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-28  Score=223.65  Aligned_cols=229  Identities=17%  Similarity=0.191  Sum_probs=187.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeec-----CCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLE-----TQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~-----~~~~~lv~  111 (292)
                      .|.+|.||+++...       +++.+|+|+++... ...+++..|..+++.. .|||++.++|++..     ++++||||
T Consensus        29 ~Gtygkv~k~k~~~-------~~~~aa~kI~~~~~-d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVM  100 (953)
T KOG0587|consen   29 NGTYGKVYKGRHVK-------TGQLAAIKIMDPTE-DEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVM  100 (953)
T ss_pred             eccceeEEEEeeee-------cCceeeeEeecCCc-cccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEe
Confidence            89999999999876       99999999988763 3346678889999988 69999999999974     56899999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      |||.+||..++++.+.     +..+.|..+..|+..++.|+.+||   ...++|||+|=.|||++.++.+||+|||++.+
T Consensus       101 EfC~gGSVTDLVKn~~-----g~rl~E~~IaYI~re~lrgl~HLH---~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQ  172 (953)
T KOG0587|consen  101 EFCGGGSVTDLVKNTK-----GNRLKEEWIAYILREILRGLAHLH---NNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  172 (953)
T ss_pred             eccCCccHHHHHhhhc-----ccchhhHHHHHHHHHHHHHHHHHh---hcceeeecccCceEEEeccCcEEEeeeeeeee
Confidence            9999999999996442     778999999999999999999999   99999999999999999999999999999998


Q ss_pred             cCCCCccchhhhhcccccccccccCCC----------------CeE--EEccchhhhhhccchhhhcccccccCCCCCCc
Q 044211          192 IPEGETHISELLSGLRAFDLARLNEDD----------------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~~~----------------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (292)
                      +... .....+..||+-||+|++...-                |++  ||-...+|+.+......++..--.+.+..-.+
T Consensus       173 ldsT-~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~IpRNPPPkLkrp  251 (953)
T KOG0587|consen  173 LDST-VGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKRP  251 (953)
T ss_pred             eecc-cccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhhhhccCCCCCCccccch
Confidence            8643 2334667899999888776422                888  77733456666666665555333333333335


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ......+.++|..||.+|-++|| +.++++.
T Consensus       252 ~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~h  282 (953)
T KOG0587|consen  252 KKWSKKFNDFISTCLVKDYEQRPSTEELLKH  282 (953)
T ss_pred             hhHHHHHHHHHHHHHhhccccCcchhhhccC
Confidence            67889999999999999999999 9888753

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.96  E-value=2.7e-29  Score=213.26  Aligned_cols=227  Identities=15%  Similarity=0.133  Sum_probs=167.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|++|.||+|.+..       +++.||+|.+....  ......+.+|+..++.++|+|++++++++...+..++++||++
T Consensus         9 ~g~~~~vy~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~   81 (283)
T cd07835           9 EGTYGVVYKARDKL-------TGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLD   81 (283)
T ss_pred             CCCCeEEEEEEEcC-------CCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccC
Confidence            78999999999865       89999999986542  2234568899999999999999999999999999999999996


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                       ++|.+++...     ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++......
T Consensus        82 -~~l~~~~~~~-----~~~~~~~~~~~~~~~~i~~~L~~lH---~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~  152 (283)
T cd07835          82 -LDLKKYMDSS-----PLTGLDPPLIKSYLYQLLQGIAYCH---SHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVP  152 (283)
T ss_pred             -cCHHHHHhhC-----CCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCC
Confidence             6999998321     1246899999999999999999999   899999999999999999999999999999765432


Q ss_pred             CccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhhhcc-------------------
Q 044211          196 ETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNEIID-------------------  241 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~-------------------  241 (292)
                      ... .....++..|++|++..       ++     |++  +|+ |.. ++...........                   
T Consensus       153 ~~~-~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (283)
T cd07835         153 VRT-YTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRP-LFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSL  230 (283)
T ss_pred             ccc-cCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhCCCChHHhhhhhhc
Confidence            211 12234567787777432       12     888  888 643 3322211111000                   


Q ss_pred             ----cccc-cCCCC--CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 ----PLIM-GDRSC--SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 ----~~~~-~~~~~--~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                          .... .....  ......+..+.+++.+||+.||.+|| +.+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         231 PDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             hhhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                0000 00000  00113346789999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.96  E-value=4.1e-29  Score=212.28  Aligned_cols=227  Identities=17%  Similarity=0.169  Sum_probs=168.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv~e~  113 (292)
                      .|+||.||+|.+..       +++.||+|.+...  .......+.+|+.+++.++|+|++++++++...  +..++|+||
T Consensus         9 ~g~~~~vy~~~~~~-------~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~   81 (287)
T cd07840           9 EGTYGQVYKARNKK-------TGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEY   81 (287)
T ss_pred             cCCCeEEEEEEECC-------CCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEecc
Confidence            79999999999875       7899999999765  234456788999999999999999999999887  789999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++ +|.+++.      .....+++..+..++.|++.||+|||   ..+++|+||+|+||++++++.++|+|||++....
T Consensus        82 ~~~-~l~~~~~------~~~~~~~~~~~~~i~~~i~~al~~LH---~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~  151 (287)
T cd07840          82 MDH-DLTGLLD------SPEVKFTESQIKCYMKQLLEGLQYLH---SNGILHRDIKGSNILINNDGVLKLADFGLARPYT  151 (287)
T ss_pred             ccc-cHHHHHh------ccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEEcCCCCEEEccccceeecc
Confidence            984 9988883      22357899999999999999999999   8899999999999999999999999999998775


Q ss_pred             CCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchh---hhcc--------------
Q 044211          194 EGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLN---EIID--------------  241 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~---~~~~--------------  241 (292)
                      ...........++..|++|+...       ++     |++  ||+ |. .++.......   ....              
T Consensus       152 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (287)
T cd07840         152 KRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGK-PIFQGSTELEQLEKIFELCGSPTDENWPGVS  230 (287)
T ss_pred             CCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCC-CCCCCCChHHHHHHHHHHhCCCchhhccccc
Confidence            44322223344567787777422       22     888  888 54 3332211100   0000              


Q ss_pred             -----cccccCCCCCC-----chH-HHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 -----PLIMGDRSCSG-----NQQ-QLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 -----~~~~~~~~~~~-----~~~-~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                           .........+.     ... ++..+.+++.+||+.+|.+|| +.++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         231 KLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             cchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence                 00000000000     001 266889999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.96  E-value=6.5e-29  Score=214.34  Aligned_cols=179  Identities=18%  Similarity=0.192  Sum_probs=137.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv~e~~~  115 (292)
                      +|+||.||+|....     ..++..||+|.+....  ....+.+|+.+++.++||||+++++++..  +...++|+||+.
T Consensus        11 ~G~~g~Vy~~~~~~-----~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07867          11 RGTYGHVYKAKRKD-----GKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAE   83 (317)
T ss_pred             cCCCeeEEEEEecC-----CCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC
Confidence            89999999998641     0145789999987543  23457889999999999999999999864  456789999998


Q ss_pred             CCChhHHhhhhCCC--CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe----cCCCceEEeecccc
Q 044211          116 CGSLADRIRIHHTP--QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF----NEENVAKLFDFSFS  189 (292)
Q Consensus       116 ~gsL~~~l~~~~~~--~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili----~~~~~~kl~Dfg~a  189 (292)
                      + +|.+++..+...  ......+++..+..++.|++.||.|||   +.+++|+||||+|||+    +.++.+||+|||++
T Consensus        84 ~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a  159 (317)
T cd07867          84 H-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFA  159 (317)
T ss_pred             C-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEccCCCCCCcEEEeeccce
Confidence            4 888887533211  123456889999999999999999999   8999999999999999    56678999999999


Q ss_pred             cccCCCCcc--chhhhhcccccccccccCC-------C-----CeE--EEc-cch
Q 044211          190 ISIPEGETH--ISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHI  227 (292)
Q Consensus       190 ~~~~~~~~~--~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~  227 (292)
                      .........  ......|+..|++||....       +     |++  ||+ |..
T Consensus       160 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~  214 (317)
T cd07867         160 RLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEP  214 (317)
T ss_pred             eccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCC
Confidence            876543221  1234567888988885432       1     888  888 653

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-29  Score=216.99  Aligned_cols=226  Identities=17%  Similarity=0.172  Sum_probs=184.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|-||+||-|++++       +|+.||||.+++.  .....+.+.+|+.+|.++.||.||.+--.|++++..+.|||-+.
T Consensus       574 SGQFG~VYgg~hRk-------tGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~  646 (888)
T KOG4236|consen  574 SGQFGTVYGGKHRK-------TGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLH  646 (888)
T ss_pred             CCcceeeecceecc-------cCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhc
Confidence            89999999999988       9999999999764  23345789999999999999999999999999999999999998


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC---CceEEeeccccccc
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE---NVAKLFDFSFSISI  192 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~---~~~kl~Dfg~a~~~  192 (292)
                      | +..+.|-     +...+.+++.....+..||+.||.|||   -.+|+|+||||+|||+.+.   ..+||||||+|+++
T Consensus       647 G-DMLEMIL-----SsEkgRL~er~TkFlvtQIL~ALr~LH---~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiI  717 (888)
T KOG4236|consen  647 G-DMLEMIL-----SSEKGRLPERITKFLVTQILVALRYLH---FKNIVHCDLKPENVLLASASPFPQVKLCDFGFARII  717 (888)
T ss_pred             c-hHHHHHH-----HhhcccchHHHHHHHHHHHHHHHHHhh---hcceeeccCCchheeeccCCCCCceeeccccceeec
Confidence            5 6666661     345677899888999999999999999   8999999999999999854   47999999999998


Q ss_pred             CCCCccchhhhhcccccccccccCCC-----------CeE-EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          193 PEGETHISELLSGLRAFDLARLNEDD-----------GYV-VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi-el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .+..  .....+||+.|.+|++....           ||| .+- ....||-+...+.+.++-..- -+|+.++.+..+.
T Consensus       718 gEks--FRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQIQNAaF-MyPp~PW~eis~~  794 (888)
T KOG4236|consen  718 GEKS--FRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAF-MYPPNPWSEISPE  794 (888)
T ss_pred             chhh--hhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchhHHhhcccc-ccCCCchhhcCHH
Confidence            7543  34568899999999887543           888 444 667788777777665553222 2233333678888


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ..+||...|+..-.+|- ....+.
T Consensus       795 AidlIn~LLqVkm~kRysvdk~ls  818 (888)
T KOG4236|consen  795 AIDLINNLLQVKMRKRYSVDKSLS  818 (888)
T ss_pred             HHHHHHHHHHHHHHHhcchHhhcc
Confidence            99999999999999998 766554

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.96  E-value=5.4e-29  Score=212.31  Aligned_cols=226  Identities=15%  Similarity=0.143  Sum_probs=162.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|++|.||+|....       +++.||+|.+..... .....+.+|+.++++++|+||+++++++...+..++|+||+. 
T Consensus        15 ~g~~~~vy~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-   86 (291)
T cd07844          15 EGSYATVYKGRSKL-------TGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLD-   86 (291)
T ss_pred             ecCCeEEEEEEEcC-------CCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEecCC-
Confidence            89999999999875       789999999865422 223457789999999999999999999999999999999998 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++.+      ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++.......
T Consensus        87 ~~L~~~~~~------~~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~  157 (291)
T cd07844          87 TDLKQYMDD------CGGGLSMHNVRLFLFQLLRGLAYCH---QRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPS  157 (291)
T ss_pred             CCHHHHHHh------CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCHHHEEEcCCCCEEECccccccccCCCC
Confidence            499998832      2346889999999999999999999   8999999999999999999999999999987543221


Q ss_pred             ccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhh----hcc---c--------c---
Q 044211          197 THISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNE----IID---P--------L---  243 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~----~~~---~--------~---  243 (292)
                      .. .....++..|.+|+...       ++     |++  +|+ |.. ++.......+    ..+   .        .   
T Consensus       158 ~~-~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (291)
T cd07844         158 KT-YSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRP-LFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSN  235 (291)
T ss_pred             cc-ccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCC-CCCCCccHHHHHHHHHHhcCCCChhhhhhhhhc
Confidence            11 11223466676666432       12     888  888 643 3221110000    000   0        0   


Q ss_pred             ------cccCCCCCC----chHH--HHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          244 ------IMGDRSCSG----NQQQ--LQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       244 ------~~~~~~~~~----~~~~--~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                            .........    ....  ...+.+++.+||+.+|++|| +.+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         236 PEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             cccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence                  000000000    0011  25788999999999999999 999875

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.96  E-value=5.1e-29  Score=208.21  Aligned_cols=226  Identities=15%  Similarity=0.181  Sum_probs=173.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|+||.||++....       +++.+++|.+...  .......+.+|+.++++++|+||+++++++......++|+||++
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   82 (256)
T cd08530          10 KGSYGSVYKVKRLS-------DNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAP   82 (256)
T ss_pred             CCCceeEEEEEECC-------CCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcC
Confidence            78999999998865       8889999998753  22344578899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++.+..   .....+++..++.++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++......
T Consensus        83 ~~~L~~~~~~~~---~~~~~~~~~~~~~~~~~l~~al~~lh---~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~  156 (256)
T cd08530          83 FGDLSKAISKRK---KKRKLIPEQEIWRIFIQLLRGLQALH---EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKN  156 (256)
T ss_pred             CCCHHHHHHHHH---hhcCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEEecCCcEEEeeccchhhhccC
Confidence            999999985422   23467899999999999999999999   899999999999999999999999999999876543


Q ss_pred             CccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      .   .....++..|.+|+...      ++     |++  +|+ |+. |+... ..............+... ...+..+.
T Consensus       157 ~---~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~-p~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~  230 (256)
T cd08530         157 M---AKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAP-PFEAR-SMQDLRYKVQRGKYPPIP-PIYSQDLQ  230 (256)
T ss_pred             C---cccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCC-CCCCC-CHHHHHHHHhcCCCCCCc-hhhCHHHH
Confidence            1   12234666776655432      22     877  877 553 33221 111111112222222221 36677899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +++.+||+.+|++|| +.++++
T Consensus       231 ~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         231 NFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             HHHHHHcCCCcccCCCHHHHhc
Confidence            999999999999999 999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.96  E-value=3.1e-29  Score=214.83  Aligned_cols=227  Identities=19%  Similarity=0.166  Sum_probs=165.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCC----------
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ----------  105 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~----------  105 (292)
                      .|+||.||+|.+..       +++.||+|.++...  ......+.+|+.++++++||||+++++++....          
T Consensus        17 ~g~~g~v~~~~~~~-------~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~   89 (302)
T cd07864          17 EGTYGQVYKARDKD-------TGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKG   89 (302)
T ss_pred             ccCCEEEEEEEECC-------CCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCC
Confidence            89999999999975       78999999986532  223356778999999999999999999987654          


Q ss_pred             cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEee
Q 044211          106 IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFD  185 (292)
Q Consensus       106 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~D  185 (292)
                      ..++|+||+++ ++...+.      .....+++..+..++.|++.||+|||   ..+++|+||+|+||++++++.+||+|
T Consensus        90 ~~~lv~e~~~~-~l~~~l~------~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~kl~d  159 (302)
T cd07864          90 AFYLVFEYMDH-DLMGLLE------SGLVHFSEDHIKSFMKQLLEGLNYCH---KKNFLHRDIKCSNILLNNKGQIKLAD  159 (302)
T ss_pred             cEEEEEcccCc-cHHHHHh------cCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCcEEeCc
Confidence            68899999985 7777772      22456899999999999999999999   89999999999999999999999999


Q ss_pred             cccccccCCCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhhh--cccccccC-
Q 044211          186 FSFSISIPEGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNEI--IDPLIMGD-  247 (292)
Q Consensus       186 fg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~~--~~~~~~~~-  247 (292)
                      ||++...............++..|++|+...       ++     |++  +|+ |+. ++.........  +....... 
T Consensus       160 fg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~-~~~~~~~~~~~~~~~~~~~~~~  238 (302)
T cd07864         160 FGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKP-IFQANQELAQLELISRLCGSPC  238 (302)
T ss_pred             ccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCCC
Confidence            9999876543322222234566676666432       22     888  888 643 33221111000  00000000 


Q ss_pred             -------------------CCC-----CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          248 -------------------RSC-----SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       248 -------------------~~~-----~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                                         ...     ......+..+.+++.+||+.||++|| +.+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         239 PAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             hhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                               000     00012467899999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=7.5e-29  Score=208.53  Aligned_cols=225  Identities=16%  Similarity=0.183  Sum_probs=168.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-----CcchHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-----KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv  110 (292)
                      +|+||.||+|....       +++.||+|.+...     .......+.+|+.++++++|+||+++++++...  ..++++
T Consensus        12 ~g~~g~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v   84 (264)
T cd06653          12 RGAFGEVYLCYDAD-------TGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIF   84 (264)
T ss_pred             cCCCeEEEEEEEcC-------CCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEE
Confidence            79999999999865       8899999987532     123345788999999999999999999998764  457899


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +||+++++|.+++.       ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++.
T Consensus        85 ~e~~~~~~L~~~~~-------~~~~l~~~~~~~~~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  154 (264)
T cd06653          85 VEYMPGGSIKDQLK-------AYGALTENVTRRYTRQILQGVSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASK  154 (264)
T ss_pred             EEeCCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECcccccc
Confidence            99999999999983       3345889999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCc--cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCch
Q 044211          191 SIPEGET--HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       191 ~~~~~~~--~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
                      .......  .......++..|++|++...      +     |++  +++ |+. |+..........+ ..........+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~~~~~~~~~-~~~~~~~~~~p~  232 (264)
T cd06653         155 RIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKP-PWAEYEAMAAIFK-IATQPTKPMLPD  232 (264)
T ss_pred             ccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCC-CCCccCHHHHHHH-HHcCCCCCCCCc
Confidence            6643211  11123457778877776432      2     888  888 543 4433322332222 221111111124


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .....+.+++.+||+ +|..|| +.+++.
T Consensus       233 ~~~~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         233 GVSDACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             ccCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence            667789999999999 589999 888764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.96  E-value=2.4e-29  Score=218.79  Aligned_cols=228  Identities=15%  Similarity=0.192  Sum_probs=167.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeec----CCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE----TQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~----~~~~~lv~  111 (292)
                      .|+||.||+|....       +++.||+|.+...  .......+.+|+.++++++||||+++++++..    ....++|+
T Consensus        15 ~g~~g~v~~~~~~~-------~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~   87 (334)
T cd07855          15 SGAYGVVCSAIDTR-------SGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVVM   87 (334)
T ss_pred             cCCCeEEEEEEEcC-------CCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEEE
Confidence            89999999999875       8999999998754  22345678889999999999999999998764    34578999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+. |+|.+++       .....+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.+||+|||++..
T Consensus        88 e~~~-~~l~~~~-------~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~  156 (334)
T cd07855          88 DLME-SDLHHII-------HSDQPLTEEHIRYFLYQLLRGLKYIH---SANVIHRDLKPSNLLVNEDCELRIGDFGMARG  156 (334)
T ss_pred             ehhh-hhHHHHh-------ccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEeccccccee
Confidence            9997 6999888       23456899999999999999999999   89999999999999999999999999999976


Q ss_pred             cCCCCccc---hhhhhccccccccccc-------CCC-----CeE--EEccchhhhhhccchh--------------hhc
Q 044211          192 IPEGETHI---SELLSGLRAFDLARLN-------EDD-----GYV--VLLDHIKKYFEEDRLN--------------EII  240 (292)
Q Consensus       192 ~~~~~~~~---~~~~~g~~~y~~~~~~-------~~~-----Gvi--el~~~~~~~~~~~~~~--------------~~~  240 (292)
                      ........   .....++..|.+|+..       .++     |++  +|+++..++.......              ..+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~  236 (334)
T cd07855         157 LSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVL  236 (334)
T ss_pred             ecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhh
Confidence            64332211   1234577788777753       222     887  8873333332221100              000


Q ss_pred             c-----------cccccCCCCCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          241 D-----------PLIMGDRSCSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       241 ~-----------~~~~~~~~~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +           .......+.+.   ....+..+.+++.+||+.+|++|| +.+++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  294 (334)
T cd07855         237 NRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQH  294 (334)
T ss_pred             hhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            0           00000000000   013467899999999999999999 9998874

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.96  E-value=5.1e-29  Score=212.80  Aligned_cols=230  Identities=13%  Similarity=0.108  Sum_probs=165.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcC-CCCccceeeeeecCCc-----ceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQI-----PIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~-----~~l  109 (292)
                      +|+||.||+|.+..       +++.||+|.++...  ......+.+|+.+++++. |+||+++++++...+.     .++
T Consensus        11 ~g~~g~vy~~~~~~-------~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~l   83 (295)
T cd07837          11 EGTYGKVYKARDKN-------TGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYL   83 (295)
T ss_pred             ccCCeEEEEEEECC-------CCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEE
Confidence            89999999999875       88999999976532  223456889999999995 6999999999887555     799


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-CCceEEeeccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-ENVAKLFDFSF  188 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~  188 (292)
                      ++||+++ +|.+++.....  .....+++..+..++.||+.||.|||   ..+++|+||+|+||+++. ++.+||+|||+
T Consensus        84 v~e~~~~-~l~~~~~~~~~--~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~~~nil~~~~~~~~kl~dfg~  157 (295)
T cd07837          84 VFEYLDS-DLKKFMDSNGR--GPGRPLPAKTIKSFMYQLLKGVAHCH---KHGVMHRDLKPQNLLVDKQKGLLKIADLGL  157 (295)
T ss_pred             EeeccCc-CHHHHHHHhcc--cCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEecCCCeEEEeeccc
Confidence            9999995 89988843321  12457899999999999999999999   899999999999999998 89999999999


Q ss_pred             ccccCCCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhhhcc---c--------
Q 044211          189 SISIPEGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNEIID---P--------  242 (292)
Q Consensus       189 a~~~~~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~---~--------  242 (292)
                      +..+..... ......+++.|.+|++..       ++     |++  +|+ |. .++...........   .        
T Consensus       158 ~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (295)
T cd07837         158 GRAFSIPVK-SYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQ-PLFPGDSELQQLLHIFKLLGTPTEQV  235 (295)
T ss_pred             ceecCCCcc-ccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCC-CCCCCCCHHHHHHHHHHHhCCCChhh
Confidence            876533211 112234566777776432       22     888  887 54 33322221111100   0        


Q ss_pred             --ccc-----cCCCCCC-------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 --LIM-----GDRSCSG-------NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 --~~~-----~~~~~~~-------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                        ...     ...+...       .+..+..+.++|.+||+.||.+|| +.|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         236 WPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             CcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence              000     0000000       013466799999999999999999 999875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.96  E-value=3.6e-29  Score=213.12  Aligned_cols=231  Identities=16%  Similarity=0.166  Sum_probs=171.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC----cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK----PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      .|+||.||++....    +..+++.||+|.++...    ....+.+.+|+.++.++ +|+||+++++++......++|+|
T Consensus        10 ~G~~~~vy~~~~~~----~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~e   85 (288)
T cd05583          10 TGAYGKVFLVRKVG----GHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLILD   85 (288)
T ss_pred             cCCCceEEEEEEec----cccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEEEe
Confidence            79999999987531    11167889999986431    22345688999999999 59999999999998889999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+.+|+|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++..+
T Consensus        86 ~~~~~~L~~~~~-------~~~~~~~~~~~~~~~ql~~~l~~lH---~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~  155 (288)
T cd05583          86 YVNGGELFTHLY-------QREHFTESEVRVYIAEIVLALDHLH---QLGIIYRDIKLENILLDSEGHVVLTDFGLSKEF  155 (288)
T ss_pred             cCCCCcHHHHHh-------hcCCcCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEEECcccccc
Confidence            999999999983       3356889999999999999999999   899999999999999999999999999998876


Q ss_pred             CCCCccchhhhhcccccccccccC--------CC-----CeE--EEc-cchhhhhhcc---chhhhcccccccCCCCCCc
Q 044211          193 PEGETHISELLSGLRAFDLARLNE--------DD-----GYV--VLL-DHIKKYFEED---RLNEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~--------~~-----Gvi--el~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  253 (292)
                      ............|+..|++|+...        ++     |++  +|+ |.. |+....   ..............+.+  
T Consensus       156 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~--  232 (288)
T cd05583         156 LAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGAS-PFTVDGEQNSQSEISRRILKSKPPFP--  232 (288)
T ss_pred             ccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCC-CcccCcccchHHHHHHHHHccCCCCC--
Confidence            544333333345777787666432        22     877  888 543 321111   11111111122222222  


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHH
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQ  285 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~  285 (292)
                      ...+..+.+++.+||+.||++|| +.++...|+
T Consensus       233 ~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~  265 (288)
T cd05583         233 KTMSAEARDFIQKLLEKDPKKRLGANGADEIKN  265 (288)
T ss_pred             cccCHHHHHHHHHHhcCCHhhccCcchHHHHhc
Confidence            24567899999999999999999 888776654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.96  E-value=2.1e-29  Score=213.31  Aligned_cols=224  Identities=18%  Similarity=0.187  Sum_probs=170.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||++....       +++.||+|.+...   .......+.+|..++++++ |+||+++++++..++..++||||
T Consensus        11 ~g~~~~vy~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~   83 (280)
T cd05581          11 EGSFSTVVLAKEKE-------TNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEY   83 (280)
T ss_pred             CCCceEEEEEEEcC-------CCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEEcC
Confidence            89999999999875       8999999998653   2233456889999999998 99999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +.+++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++....
T Consensus        84 ~~~~~L~~~l~-------~~~~l~~~~~~~i~~ql~~~l~~Lh---~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~  153 (280)
T cd05581          84 APNGELLQYIR-------KYGSLDEKCTRFYAAEILLALEYLH---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLD  153 (280)
T ss_pred             CCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEecCCccccccC
Confidence            99999999993       3347999999999999999999999   8999999999999999999999999999988664


Q ss_pred             CCCc-------------------cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhc
Q 044211          194 EGET-------------------HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEII  240 (292)
Q Consensus       194 ~~~~-------------------~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~  240 (292)
                      ....                   .......++..|.+|+...      ++     |++  +++ |.. |+..... ....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~-p~~~~~~-~~~~  231 (280)
T cd05581         154 PNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKP-PFRGSNE-YLTF  231 (280)
T ss_pred             CccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCC-CCCCccH-HHHH
Confidence            4321                   1123345667777766432      22     777  777 443 3222211 1111


Q ss_pred             ccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-H----HHHHH
Q 044211          241 DPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-M----VDVAK  282 (292)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~----~el~~  282 (292)
                      ..........+  ...++.+.+++.+||+.+|++|| +    .+++.
T Consensus       232 ~~~~~~~~~~~--~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         232 QKILKLEYSFP--PNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             HHHHhcCCCCC--CccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence            11111222222  24567899999999999999999 9    66654

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.96  E-value=7.1e-29  Score=211.52  Aligned_cols=222  Identities=18%  Similarity=0.193  Sum_probs=167.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC----cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK----PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      .|+||.||.+....    +..++..||+|.+....    ....+.+.+|+.+++++ +|+||+++++++..+...++|+|
T Consensus        10 ~G~~g~v~~~~~~~----~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (290)
T cd05613          10 TGAYGKVFLVRKVS----GHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLILD   85 (290)
T ss_pred             cCCcceEEEEEecc----CCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEEEe
Confidence            79999999998631    11278899999986532    22346688899999999 59999999999998888999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+++++|.+++.       ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++...
T Consensus        86 ~~~~~~L~~~l~-------~~~~l~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  155 (290)
T cd05613          86 YINGGELFTHLS-------QRERFKEQEVQIYSGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEF  155 (290)
T ss_pred             cCCCCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEECCCCCEEEeeCccceec
Confidence            999999999993       3346888999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCccchhhhhcccccccccccC--------CC-----CeE--EEc-cchhhhhhc---cchhhhcccccccCCCCCCc
Q 044211          193 PEGETHISELLSGLRAFDLARLNE--------DD-----GYV--VLL-DHIKKYFEE---DRLNEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~--------~~-----Gvi--el~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  253 (292)
                      ............|+..|++|+...        ++     |++  +|+ |.. |+...   .......+.......+.+  
T Consensus       156 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~--  232 (290)
T cd05613         156 HEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGAS-PFTVDGEKNSQAEISRRILKSEPPYP--  232 (290)
T ss_pred             ccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCC-CCCcCCccccHHHHHHHhhccCCCCC--
Confidence            543333333455788887777542        22     887  777 543 32211   111222222222222222  


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                      ...++.+.+++.+||+.||++||
T Consensus       233 ~~~~~~~~~ll~~~l~~~p~~R~  255 (290)
T cd05613         233 QEMSALAKDIIQRLLMKDPKKRL  255 (290)
T ss_pred             ccCCHHHHHHHHHHhcCCHHHhc
Confidence            35677899999999999999996

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.4e-30  Score=218.42  Aligned_cols=221  Identities=17%  Similarity=0.208  Sum_probs=180.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +||||.||.+..+.       +|+.||+|.+.+.   ........++|-++|.+++.+.||.+--+|.+++.+++|+..|
T Consensus       195 kGGFGEV~acqvra-------TGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVLtlM  267 (591)
T KOG0986|consen  195 KGGFGEVCACQVRA-------TGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVLTLM  267 (591)
T ss_pred             cccccceeEEEEec-------chhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEEEee
Confidence            99999999999876       9999999998643   2234456789999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +||+|.-+|..++     .+.+++..++.++.+|+.||.+||   +.+|+.|||||+|||+|++|.++|+|.|+|..+..
T Consensus       268 NGGDLkfHiyn~g-----~~gF~e~ra~FYAAEi~cGLehlH---~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~  339 (591)
T KOG0986|consen  268 NGGDLKFHIYNHG-----NPGFDEQRARFYAAEIICGLEHLH---RRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPE  339 (591)
T ss_pred             cCCceeEEeeccC-----CCCCchHHHHHHHHHHHhhHHHHH---hcceeeccCChhheeeccCCCeEeeccceEEecCC
Confidence            9999998885443     468999999999999999999999   99999999999999999999999999999998876


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccch-hhhcccccccCCCCCCchHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRL-NEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      +....  ..+||.+||+|++..+.           |++  ||+ |..+.--....+ .+-++..+....--.. +..+++
T Consensus       340 g~~~~--~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~~ey~-~kFS~e  416 (591)
T KOG0986|consen  340 GKPIR--GRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDPEEYS-DKFSEE  416 (591)
T ss_pred             CCccc--cccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcchhhcc-cccCHH
Confidence            65433  34899999999988765           888  999 765322222222 2233443333322111 478889


Q ss_pred             HHHHHhHhcCCCCCCCC
Q 044211          260 FAHLIFECVNESPVDRP  276 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP  276 (292)
                      ..+|+...|.+||.+|-
T Consensus       417 akslc~~LL~Kdp~~RL  433 (591)
T KOG0986|consen  417 AKSLCEGLLTKDPEKRL  433 (591)
T ss_pred             HHHHHHHHHccCHHHhc
Confidence            99999999999999997

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.96  E-value=6.1e-29  Score=207.10  Aligned_cols=220  Identities=19%  Similarity=0.220  Sum_probs=169.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|+||.||++....       +++.|++|.+.....   .....+.+|+.++++++|+||+++++.+..++..+++|||+
T Consensus         3 ~G~~~~v~~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   75 (250)
T cd05123           3 KGSFGKVLLVRKKD-------TGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYA   75 (250)
T ss_pred             CCCceEEEEEEECC-------CCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecC
Confidence            68999999999864       789999999865422   24567899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+++|.+++.       ....+++..+..++.|++.|+.|||   ..+++|+||+|+||+++.++.++|+|||++.....
T Consensus        76 ~~~~L~~~l~-------~~~~l~~~~~~~~~~qi~~~l~~lh---~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~  145 (250)
T cd05123          76 PGGELFSHLS-------KEGRFSEERARFYAAEIVLALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAKELSS  145 (250)
T ss_pred             CCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcceEEEcCCCcEEEeecCcceeccc
Confidence            9999999993       3346899999999999999999999   89999999999999999999999999999977654


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ... ......++..|.+|+....      +     |++  +++ |.. |+.... .............+.+  ...+..+
T Consensus       146 ~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~-p~~~~~-~~~~~~~~~~~~~~~~--~~~~~~l  220 (250)
T cd05123         146 EGS-RTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKP-PFYAED-RKEIYEKILKDPLRFP--EFLSPEA  220 (250)
T ss_pred             CCC-cccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCC-CCCCCC-HHHHHHHHhcCCCCCC--CCCCHHH
Confidence            321 1233456777877765432      2     877  777 543 332222 1222222222222222  2446789


Q ss_pred             HHHHhHhcCCCCCCCC-HHH
Q 044211          261 AHLIFECVNESPVDRP-MVD  279 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~e  279 (292)
                      .+++.+||..||++|| +.+
T Consensus       221 ~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         221 RDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             HHHHHHHhcCCHhhCCCccc
Confidence            9999999999999999 844

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.96  E-value=1.1e-28  Score=209.24  Aligned_cols=225  Identities=15%  Similarity=0.146  Sum_probs=163.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcC-CCCccceeeeeecC--CcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMI-HRCIFKLIGCCLET--QIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~--~~~~lv~e~  113 (292)
                      +|+||.||+|....       +++.||+|.++... ........+|+..+.++. |+||+++++++...  +..++|+||
T Consensus         9 ~g~~~~v~~~~~~~-------~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~   81 (282)
T cd07831           9 EGTFSEVLKAQSRK-------TGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFEL   81 (282)
T ss_pred             ccccceEEEEEEcC-------CCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEec
Confidence            79999999999865       88999999987542 222234567899999985 99999999999987  789999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +. |+|.+.+.      .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++. +.+||+|||++....
T Consensus        82 ~~-~~l~~~l~------~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~  150 (282)
T cd07831          82 MD-MNLYELIK------GRKRPLPEKRVKSYMYQLLKSLDHMH---RNGIFHRDIKPENILIKD-DILKLADFGSCRGIY  150 (282)
T ss_pred             CC-ccHHHHHH------hccCCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEcC-CCeEEEecccccccc
Confidence            98 58888883      12356899999999999999999999   899999999999999999 999999999998764


Q ss_pred             CCCccchhhhhcccccccccccC-------CC-----CeE--EEccchhhhhhccchh---hh--------------ccc
Q 044211          194 EGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLLDHIKKYFEEDRLN---EI--------------IDP  242 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~~~~~~~~~~~~~~---~~--------------~~~  242 (292)
                      .....  ....++..|.+|+...       ++     |++  ||++...++.......   ..              ...
T Consensus       151 ~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (282)
T cd07831         151 SKPPY--TEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRK  228 (282)
T ss_pred             cCCCc--CCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcc
Confidence            33221  2234677787777432       22     888  8883232332211100   00              000


Q ss_pred             ccccCCCCCC---------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 LIMGDRSCSG---------NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 ~~~~~~~~~~---------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ........+.         ....+..+.+++.+||+.+|++|| +.+++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         229 SRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             cccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence            0000000000         013467899999999999999999 999876

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.96  E-value=1.9e-28  Score=208.97  Aligned_cols=226  Identities=15%  Similarity=0.116  Sum_probs=163.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....       +++.||+|.+..... .....+.+|+..++.++|+||+++++++...+..++|+||+. 
T Consensus        15 ~g~~~~v~~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~-   86 (291)
T cd07870          15 EGSYATVYKGISRI-------NGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFEYMH-   86 (291)
T ss_pred             ecCCEEEEEEEEcC-------CCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEeccc-
Confidence            89999999998865       789999999865422 223457789999999999999999999999889999999997 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+.+.      .....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.++|+|||++.......
T Consensus        87 ~~l~~~~~------~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~  157 (291)
T cd07870          87 TDLAQYMI------QHPGGLHPYNVRLFMFQLLRGLAYIH---GQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPS  157 (291)
T ss_pred             CCHHHHHH------hCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEEcCCCcEEEeccccccccCCCC
Confidence            68877772      22345778888999999999999999   8999999999999999999999999999987653322


Q ss_pred             ccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhc---------------------
Q 044211          197 THISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEII---------------------  240 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~---------------------  240 (292)
                      .. .....++..|++|+....       +     |++  +|+ |.. ++.......+.+                     
T Consensus       158 ~~-~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (291)
T cd07870         158 QT-YSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQP-AFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKL  235 (291)
T ss_pred             CC-CCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCchhHHHHHHHHHHHcCCCChhhhhhhhhc
Confidence            11 122346778888775421       1     888  888 543 222111100000                     


Q ss_pred             ----ccccccCCCCC-----CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          241 ----DPLIMGDRSCS-----GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       241 ----~~~~~~~~~~~-----~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                          ........+..     .....+..+.+++.+|++.||.+|| +.+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         236 PNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             ccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence                00000000000     0001245788999999999999999 999874

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.96  E-value=1.2e-28  Score=211.88  Aligned_cols=227  Identities=16%  Similarity=0.156  Sum_probs=161.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC--------cc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ--------IP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~--------~~  107 (292)
                      +|+||.||+|....       +++.||+|.+...  .......+.+|+.++++++||||+++++++....        ..
T Consensus        22 ~g~~~~v~~~~~~~-------~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~   94 (310)
T cd07865          22 QGTFGEVFKARHKK-------TKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSF   94 (310)
T ss_pred             cCCCEEEEEEEECC-------CCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCCceE
Confidence            89999999999875       8999999998643  2223345678999999999999999999987644        34


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++|+||+. ++|.+.+.      .....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||
T Consensus        95 ~lv~e~~~-~~l~~~l~------~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg  164 (310)
T cd07865          95 YLVFEFCE-HDLAGLLS------NKNVKFTLSEIKKVMKMLLNGLYYIH---RNKILHRDMKAANILITKDGILKLADFG  164 (310)
T ss_pred             EEEEcCCC-cCHHHHHH------hcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEECCCCcEEECcCC
Confidence            89999998 48888883      23346899999999999999999999   8899999999999999999999999999


Q ss_pred             cccccCCCCcc---chhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchh--hhccccc---
Q 044211          188 FSISIPEGETH---ISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLN--EIIDPLI---  244 (292)
Q Consensus       188 ~a~~~~~~~~~---~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~--~~~~~~~---  244 (292)
                      ++.........   ......++..|++||...       ++     |++  +|+ |.. ++.......  ..+....   
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~-~~~~~~~~~~~~~~~~~~~~~  243 (310)
T cd07865         165 LARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSP-IMQGNTEQHQLTLISQLCGSI  243 (310)
T ss_pred             CcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhCCC
Confidence            99766432221   112334677788887532       22     888  887 543 221111000  0000000   


Q ss_pred             -------------ccC--CCCCC---------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          245 -------------MGD--RSCSG---------NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       245 -------------~~~--~~~~~---------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                                   ...  .+...         .......+.++|.+||+.||++|| +.++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         244 TPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             ChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence                         000  00000         001234677999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.96  E-value=8.4e-29  Score=211.73  Aligned_cols=226  Identities=18%  Similarity=0.232  Sum_probs=165.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +++.||+|.++... ......+..|+..+.+.. |+||+++++++......++++||+.
T Consensus        25 ~g~~~~v~~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   97 (296)
T cd06618          25 SGTCGQVYKMRFKK-------TGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMS   97 (296)
T ss_pred             ccCCeEEEEEEECC-------CCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccC
Confidence            89999999999964       69999999997542 233456777887777774 9999999999999999999999986


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP-RPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                       ++|.+++..      ....+++..+..++.|++.||+|||   . .+++|+||+|+||++++++.+||+|||++..+..
T Consensus        98 -~~l~~l~~~------~~~~l~~~~~~~i~~~i~~~l~~lH---~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~  167 (296)
T cd06618          98 -TCLDKLLKR------IQGPIPEDILGKMTVAIVKALHYLK---EKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVD  167 (296)
T ss_pred             -cCHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHH---hhCCEecCCCcHHHEEEcCCCCEEECccccchhccC
Confidence             488777732      2347899999999999999999999   5 5899999999999999999999999999876643


Q ss_pred             CCccchhhhhccccccccccc----------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCC-CCCCchH
Q 044211          195 GETHISELLSGLRAFDLARLN----------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR-SCSGNQQ  255 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~----------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  255 (292)
                      ....  ....++..|.+|+..          .++     |++  +|+ |+. |+.......+.+...+.... ..+....
T Consensus       168 ~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (296)
T cd06618         168 SKAK--TRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQF-PYKNCKTEFEVLTKILQEEPPSLPPNEG  244 (296)
T ss_pred             CCcc--cCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCC-CCCcchhHHHHHHHHhcCCCCCCCCCCC
Confidence            2221  223456667666543          233     888  888 554 33221111111111111111 1111123


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++..+.+++.+||+.||++|| +.+++..
T Consensus       245 ~~~~l~~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         245 FSPDFCSFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             CCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            567899999999999999999 9999865

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.96  E-value=1.3e-28  Score=207.61  Aligned_cols=215  Identities=15%  Similarity=0.113  Sum_probs=160.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.||++....       ++..+|+|.+........     |+.....+ +||||+++++++...+..++||||+++
T Consensus        26 ~g~~g~v~~~~~~~-------~~~~~~~k~~~~~~~~~~-----e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv~e~~~~   93 (267)
T PHA03390         26 DGKFGKVSVLKHKP-------TQKLFVQKIIKAKNFNAI-----EPMVHQLMKDNPNFIKLYYSVTTLKGHVLIMDYIKD   93 (267)
T ss_pred             CCCceEEEEEEEcC-------CCcEEEEEEEehhhcchh-----hHHHHHHhhcCCCEEEEEEEEecCCeeEEEEEcCCC
Confidence            89999999999875       889999999875422211     22222222 699999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC-ceEEeecccccccCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFSISIPEG  195 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~-~~kl~Dfg~a~~~~~~  195 (292)
                      |+|.++++       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++ .++|+|||++......
T Consensus        94 ~~L~~~l~-------~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~  163 (267)
T PHA03390         94 GDLFDLLK-------KEGKLSEAEVKKIIRQLVEALNDLH---KHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTP  163 (267)
T ss_pred             CcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCC
Confidence            99999993       2347899999999999999999999   89999999999999999888 9999999998766432


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccch---hhhcccccccCCCCCCchHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRL---NEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      .     ...++..|++|++....           |++  +|+ |+. |+......   ...+......  ....+...++
T Consensus       164 ~-----~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  235 (267)
T PHA03390        164 S-----CYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKH-PFKEDEDEELDLESLLKRQQK--KLPFIKNVSK  235 (267)
T ss_pred             c-----cCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCC-CCCCCCcchhhHHHHHHhhcc--cCCcccccCH
Confidence            2     23567788777765432           887  888 653 33221110   0011111111  1112235778


Q ss_pred             HHHHHHhHhcCCCCCCCC-H-HHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-M-VDVAK  282 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~-~el~~  282 (292)
                      .+.+++.+||+.||.+|| . .++++
T Consensus       236 ~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        236 NANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             HHHHHHHHHhccChhhCCchHHHHhc
Confidence            999999999999999999 5 77764

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.96  E-value=2e-28  Score=214.58  Aligned_cols=223  Identities=16%  Similarity=0.182  Sum_probs=163.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC------cceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ------IPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~l  109 (292)
                      +|+||.||+|....       +++.||+|.+...  .......+.+|+.++++++|+||+++++++....      ..++
T Consensus        26 ~g~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~l   98 (353)
T cd07850          26 SGAQGIVCAAYDTV-------TGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYL   98 (353)
T ss_pred             cCCCEEEEEEEECC-------CCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEEE
Confidence            89999999999875       8999999998643  3334567889999999999999999999886432      4689


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      |+||+. ++|.+.+.         ..+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++
T Consensus        99 v~e~~~-~~l~~~~~---------~~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~  165 (353)
T cd07850          99 VMELMD-ANLCQVIQ---------MDLDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA  165 (353)
T ss_pred             EEeccC-CCHHHHHh---------hcCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCccc
Confidence            999997 59988882         12888999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccch---hh--------------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRL---NE--------------  238 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~---~~--------------  238 (292)
                      ........  .....++..|++|+....      +     |++  +|+ |+. ++......   ..              
T Consensus       166 ~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~  242 (353)
T cd07850         166 RTAGTSFM--MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTV-LFPGTDHIDQWNKIIEQLGTPSDEFMS  242 (353)
T ss_pred             eeCCCCCC--CCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence            86643322  223356777877765432      2     887  887 653 22111000   00              


Q ss_pred             --------hccccc---------------ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          239 --------IIDPLI---------------MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       239 --------~~~~~~---------------~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                              ..+...               ........+...+..+.+++.+||+.||++|| +.|++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~  311 (353)
T cd07850         243 RLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQH  311 (353)
T ss_pred             HhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                    000000               00000000113456789999999999999999 9999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.96  E-value=1.7e-28  Score=208.34  Aligned_cols=228  Identities=17%  Similarity=0.156  Sum_probs=167.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|++|.||+|....       +++.||+|.++... ......+.+|+.+++.++|+||+++++++...+..++|+||+. 
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-   81 (284)
T cd07836          10 EGTYATVYKGRNRT-------TGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMD-   81 (284)
T ss_pred             cCCceEEEEEEECC-------CCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCC-
Confidence            79999999999875       78999999987543 2334667889999999999999999999999999999999999 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++....    ....+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.++|+|||++.......
T Consensus        82 ~~l~~~~~~~~----~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~  154 (284)
T cd07836          82 KDLKKYMDTHG----VRGALDPNTVKSFTYQLLKGIAFCH---ENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPV  154 (284)
T ss_pred             ccHHHHHHhcC----CCCCcCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCc
Confidence            49988884322    1356899999999999999999999   8899999999999999999999999999997654321


Q ss_pred             ccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchh---hhc---------------c-c
Q 044211          197 THISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLN---EII---------------D-P  242 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~---~~~---------------~-~  242 (292)
                      . ......++..|++|+...       ++     |++  +|+ |.. ++.......   ..+               + +
T Consensus       155 ~-~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (284)
T cd07836         155 N-TFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRP-LFPGTNNEDQLLKIFRIMGTPTESTWPGISQLP  232 (284)
T ss_pred             c-ccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCc
Confidence            1 112234567787777432       12     888  888 643 222111000   000               0 0


Q ss_pred             ccccCCCCCC-------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 LIMGDRSCSG-------NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 ~~~~~~~~~~-------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ......+...       .+..+..+.+++.+||+.||++|| +.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         233 EYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             hhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            0001100000       013456788999999999999999 999875

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.96  E-value=4e-28  Score=209.21  Aligned_cols=166  Identities=19%  Similarity=0.241  Sum_probs=133.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv~e  112 (292)
                      +|+||.||+|.....     .+++.||+|.+....   ......+.+|+.++++++||||+++++++...  ...++|+|
T Consensus        10 ~g~~g~v~~~~~~~~-----~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e   84 (316)
T cd07842          10 RGTYGRVYKAKRKNG-----KDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLFD   84 (316)
T ss_pred             cCCcEEEEEEEecCC-----CCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEe
Confidence            799999999998510     136899999987632   33446788999999999999999999999987  77999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC----CCceEEeeccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE----ENVAKLFDFSF  188 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~----~~~~kl~Dfg~  188 (292)
                      |+.+ +|.+++..+..  .....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.    ++.+||+|||+
T Consensus        85 ~~~~-~l~~~~~~~~~--~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~  158 (316)
T cd07842          85 YAEH-DLWQIIKFHRQ--AKRVSIPPSMVKSLLWQILNGVHYLH---SNWVLHRDLKPANILVMGEGPERGVVKIGDLGL  158 (316)
T ss_pred             CCCc-CHHHHHHhhcc--CCCcCcCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEEcCCCCccceEEECCCcc
Confidence            9985 88887744332  22347899999999999999999999   899999999999999999    89999999999


Q ss_pred             ccccCCCCc--cchhhhhcccccccccc
Q 044211          189 SISIPEGET--HISELLSGLRAFDLARL  214 (292)
Q Consensus       189 a~~~~~~~~--~~~~~~~g~~~y~~~~~  214 (292)
                      +........  .......++..|++|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~  186 (316)
T cd07842         159 ARLFNAPLKPLADLDPVVVTIWYRAPEL  186 (316)
T ss_pred             ccccCCCcccccccCCccccccccCHHH
Confidence            987643322  11233456778888774

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.96  E-value=1.7e-28  Score=209.56  Aligned_cols=228  Identities=16%  Similarity=0.131  Sum_probs=163.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|++|.||+|.+..       +++.||+|.+....  ....+.+.+|+.++++++|+||+++++++......++|+||++
T Consensus        12 ~g~~~~v~~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   84 (294)
T PLN00009         12 EGTYGVVYKARDRV-------TNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLD   84 (294)
T ss_pred             CCCCEEEEEEEecC-------CCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEeccc
Confidence            79999999999865       88999999986432  2234568899999999999999999999999999999999997


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-CCceEEeecccccccCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-ENVAKLFDFSFSISIPE  194 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~a~~~~~  194 (292)
                       ++|.+++..     .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++. ++.+||+|||++.....
T Consensus        85 -~~l~~~~~~-----~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~  155 (294)
T PLN00009         85 -LDLKKHMDS-----SPDFAKNPRLIKTYLYQILRGIAYCH---SHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGI  155 (294)
T ss_pred             -ccHHHHHHh-----CCCCCcCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCcceEEEECCCCEEEEcccccccccCC
Confidence             588888732     12334678888999999999999999   899999999999999985 56799999999976543


Q ss_pred             CCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhcc------------------
Q 044211          195 GETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIID------------------  241 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~------------------  241 (292)
                      .. .......++..|++|++...       +     |++  +|+ |.. ++...........                  
T Consensus       156 ~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (294)
T PLN00009        156 PV-RTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKP-LFPGDSEIDELFKIFRILGTPNEETWPGVTS  233 (294)
T ss_pred             Cc-cccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhCCCChhhcccccc
Confidence            21 11122345677877765321       2     888  888 533 3322211111000                  


Q ss_pred             -----cccccCCCCC---CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 -----PLIMGDRSCS---GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 -----~~~~~~~~~~---~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                           .......+..   .....++.+.+++.+||+.+|++|| +.+++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~  284 (294)
T PLN00009        234 LPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEH  284 (294)
T ss_pred             chhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                 0000000000   0012355789999999999999999 9998863

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.96  E-value=2.3e-28  Score=212.82  Aligned_cols=226  Identities=22%  Similarity=0.252  Sum_probs=165.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhc-CCCCccceeeeeecC--CcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLET--QIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~--~~~~lv~e  112 (292)
                      +|+||.||+|.+..       +++.||+|.+...  .......+.+|+.+++++ +|+||+++++++...  ...++|+|
T Consensus        17 ~g~~~~v~~~~~~~-------~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv~e   89 (337)
T cd07852          17 KGAYGIVWKAIDRR-------TKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFE   89 (337)
T ss_pred             CCCCeeEEEEEEcC-------CCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEEec
Confidence            89999999999865       7899999988542  223345677899999999 999999999988653  35799999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+. ++|..++.        ...+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++...
T Consensus        90 ~~~-~~L~~~~~--------~~~~~~~~~~~i~~qi~~~L~~LH---~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~  157 (337)
T cd07852          90 YME-TDLHAVIR--------ANILEDVHKRYIMYQLLKALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLARSL  157 (337)
T ss_pred             ccc-cCHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccchhcc
Confidence            998 59998882        227788899999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCcc----chhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchh----------------
Q 044211          193 PEGETH----ISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLN----------------  237 (292)
Q Consensus       193 ~~~~~~----~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~----------------  237 (292)
                      ......    ......|+..|++|+...       ++     |++  +|+ |+. ++.......                
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~-pf~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T cd07852         158 SELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKP-LFPGTSTLNQLEKIIEVIGPPSAED  236 (337)
T ss_pred             ccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCCCHHH
Confidence            543321    223345788888887532       22     888  888 653 221111000                


Q ss_pred             ----------hhcccccccCCCC--CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          238 ----------EIIDPLIMGDRSC--SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       238 ----------~~~~~~~~~~~~~--~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                ..+..........  ......+..+.+++.+||+.||++|| +.+++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         237 IESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             HHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence                      0000000000000  00012466899999999999999999 9999875

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.96  E-value=1.4e-28  Score=208.62  Aligned_cols=226  Identities=17%  Similarity=0.153  Sum_probs=168.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|++|.||+|....       +++.+++|.++....  .....+.+|+..+++++|+||+++++++...+..++++||+.
T Consensus         9 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   81 (283)
T cd05118           9 EGTYGVVYKARDKL-------TGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMD   81 (283)
T ss_pred             cCCCceEEEEEcCC-------CCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccC
Confidence            79999999999865       889999999875422  345678899999999999999999999999999999999998


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      + +|.+++..      ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||.+......
T Consensus        82 ~-~l~~~l~~------~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~  151 (283)
T cd05118          82 T-DLYKLIKD------RQRGLPESLIKSYLYQLLQGLAFCH---SHGILHRDLKPENLLINTEGVLKLADFGLARSFGSP  151 (283)
T ss_pred             C-CHHHHHHh------hcccCCHHHHHHHHHHHHHHHHHHH---HCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCC
Confidence            5 99888832      2357899999999999999999999   899999999999999999999999999999877554


Q ss_pred             CccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhhh--------------ccc----
Q 044211          196 ETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNEI--------------IDP----  242 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~~--------------~~~----  242 (292)
                      . .......++..|.+|+...       ++     |++  +|+ |+ .++.........              ...    
T Consensus       152 ~-~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (283)
T cd05118         152 V-RPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRR-PLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSL  229 (283)
T ss_pred             c-ccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCC-CCCCCCCHHHHHHHHHHHcCCCchHhcccchhh
Confidence            3 1112234566776666532       22     887  777 54 333222111100              000    


Q ss_pred             ------ccccCCCCC---CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 ------LIMGDRSCS---GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 ------~~~~~~~~~---~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                            .........   ..+..+..+.++|.+||+.||.+|| +.+++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         230 ARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             hhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence                  000000000   0124567899999999999999999 999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.96  E-value=1.8e-28  Score=207.93  Aligned_cols=216  Identities=15%  Similarity=0.155  Sum_probs=159.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHH---HHHhcCCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIV---YASQMIHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~---~l~~l~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||++....       +++.||+|.+.....   .....+..|..   .++...||||+++++++...+..++|+
T Consensus         4 ~g~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~   76 (278)
T cd05606           4 RGGFGEVYGCRKAD-------TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFIL   76 (278)
T ss_pred             cCCCeEEEEEEEec-------CCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEE
Confidence            69999999998864       789999999865321   11222444444   344457999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+.+|+|.+++.       ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||++..
T Consensus        77 e~~~g~~L~~~l~-------~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~nili~~~~~~kl~dfg~~~~  146 (278)
T cd05606          77 DLMNGGDLHYHLS-------QHGVFSEAEMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACD  146 (278)
T ss_pred             ecCCCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCCCCHHHEEECCCCCEEEccCcCccc
Confidence            9999999999883       3456999999999999999999999   89999999999999999999999999999876


Q ss_pred             cCCCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhcc--chhhhcccccccCCCCCCch
Q 044211          192 IPEGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEED--RLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  254 (292)
                      +....   .....|+..|++|+...       ++     |++  +|+ |+. |+....  ................+  .
T Consensus       147 ~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~--~  220 (278)
T cd05606         147 FSKKK---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHS-PFRQHKTKDKHEIDRMTLTMAVELP--D  220 (278)
T ss_pred             cCccC---CcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCC-CCCCCCccchHHHHHHhhccCCCCC--C
Confidence            54322   12346788887776542       22     888  888 544 433221  11111111111112222  2


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC
Q 044211          255 QQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                      ..+..+.+++.+||+.+|.+||
T Consensus       221 ~~s~~~~~li~~~l~~~p~~R~  242 (278)
T cd05606         221 SFSPELRSLLEGLLQRDVNRRL  242 (278)
T ss_pred             cCCHHHHHHHHHHhhcCHHhcc
Confidence            4567899999999999999999

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=5.8e-29  Score=226.84  Aligned_cols=203  Identities=18%  Similarity=0.163  Sum_probs=144.4

Q ss_pred             hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 044211           75 TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAY  154 (292)
Q Consensus        75 ~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~  154 (292)
                      ....+.+|+.++++++|+||+++++++...+..++++|++. ++|..++....  ...........+..++.|++.||.|
T Consensus       206 ~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~--~~~~~~~~~~~~~~i~~ql~~aL~y  282 (501)
T PHA03210        206 AAIQLENEILALGRLNHENILKIEEILRSEANTYMITQKYD-FDLYSFMYDEA--FDWKDRPLLKQTRAIMKQLLCAVEY  282 (501)
T ss_pred             HHHHHHHHHHHHHhCCCCCcCcEeEEEEECCeeEEEEeccc-cCHHHHHhhcc--ccccccccHHHHHHHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999997 58877773211  1112233456778899999999999


Q ss_pred             hhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--
Q 044211          155 LHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--  221 (292)
Q Consensus       155 lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--  221 (292)
                      ||   ..+|+||||||+|||++.++.+||+|||++..+............|+..|++|++....           |++  
T Consensus       283 LH---~~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~  359 (501)
T PHA03210        283 IH---DKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILL  359 (501)
T ss_pred             HH---hCCeecCCCCHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHH
Confidence            99   89999999999999999999999999999987755433333446789999888875432           888  


Q ss_pred             EEc-cchhhhhhcc-----chhhhccccc--ccCCC--------------------CC----CchHHHHHHHHHHhHhcC
Q 044211          222 VLL-DHIKKYFEED-----RLNEIIDPLI--MGDRS--------------------CS----GNQQQLQAFAHLIFECVN  269 (292)
Q Consensus       222 el~-~~~~~~~~~~-----~~~~~~~~~~--~~~~~--------------------~~----~~~~~~~~l~~li~~Cl~  269 (292)
                      ||+ +...|+....     .+...+....  ....+                    ..    .....+..+.+++.+||+
T Consensus       360 ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~  439 (501)
T PHA03210        360 DMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLT  439 (501)
T ss_pred             HHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhc
Confidence            888 5543332211     0111111000  00000                    00    001123467788999999


Q ss_pred             CCCCCCC-HHHHHHH
Q 044211          270 ESPVDRP-MVDVAKK  283 (292)
Q Consensus       270 ~dP~~RP-~~el~~~  283 (292)
                      .||.+|| +.|++..
T Consensus       440 ~DP~~Rpsa~elL~h  454 (501)
T PHA03210        440 FDWHLRPGAAELLAL  454 (501)
T ss_pred             cCcccCcCHHHHhhC
Confidence            9999999 9999864

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.96  E-value=2.3e-28  Score=210.30  Aligned_cols=227  Identities=16%  Similarity=0.156  Sum_probs=164.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv~e~  113 (292)
                      .|+||.||+|.+..       +++.||+|.++...  ......+.+|+.++++++|+||+++++++...  +..++|+||
T Consensus        17 ~g~~~~v~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~   89 (309)
T cd07845          17 EGTYGIVYRARDTT-------SGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEY   89 (309)
T ss_pred             ecCCEEEEEEEECC-------CCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEEec
Confidence            89999999999875       89999999986432  22234567899999999999999999998754  458999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +. ++|.+++..      ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++....
T Consensus        90 ~~-~~l~~~l~~------~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~  159 (309)
T cd07845          90 CE-QDLASLLDN------MPTPFSESQVKCLMLQLLRGLQYLH---ENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYG  159 (309)
T ss_pred             CC-CCHHHHHHh------cccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccceeeecC
Confidence            98 489888832      2356899999999999999999999   8999999999999999999999999999998765


Q ss_pred             CCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhh---hcc--------------
Q 044211          194 EGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNE---IID--------------  241 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~---~~~--------------  241 (292)
                      ..... .....++..|.+|+....       +     |++  +|+ |.. ++........   ..+              
T Consensus       160 ~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
T cd07845         160 LPAKP-MTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKP-LLPGKSEIEQLDLIIQLLGTPNESIWPGFS  237 (309)
T ss_pred             CccCC-CCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHhcCCCChhhchhhh
Confidence            43211 122234667877775421       2     888  888 543 2221111000   000              


Q ss_pred             ------cccccCCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 ------PLIMGDRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 ------~~~~~~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                            .......+...    ....++.+.++|.+||+.||++|| +.+++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h  290 (309)
T cd07845         238 DLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALES  290 (309)
T ss_pred             cccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence                  00000000000    011356788999999999999999 9998864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.96  E-value=1.3e-28  Score=213.81  Aligned_cols=232  Identities=18%  Similarity=0.151  Sum_probs=170.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCC-----cceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ-----IPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-----~~~lv  110 (292)
                      .|+||.||+|....       +++.||+|.+....  ....+.+.+|+..++.++|+||+++++++....     ..+++
T Consensus        10 ~g~~~~v~~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv   82 (330)
T cd07834          10 SGAYGVVCSAVDKR-------TGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIV   82 (330)
T ss_pred             CCCCeEEEEEEeCC-------CCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEE
Confidence            79999999999864       68999999987643  344567899999999999999999999988765     68999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +||+. ++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++.
T Consensus        83 ~e~~~-~~l~~~l~-------~~~~l~~~~~~~i~~~l~~~l~~LH---~~gi~H~dlkp~nili~~~~~~~L~dfg~~~  151 (330)
T cd07834          83 TELME-TDLHKVIK-------SPQPLTDDHIQYFLYQILRGLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLAR  151 (330)
T ss_pred             ecchh-hhHHHHHh-------CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccCceE
Confidence            99998 58998882       3447999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCc--cchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchh---hhccc--------
Q 044211          191 SIPEGET--HISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLN---EIIDP--------  242 (292)
Q Consensus       191 ~~~~~~~--~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~---~~~~~--------  242 (292)
                      .......  .......++..|.+|+...       ++     |++  +|+ |.. ++.......   .+...        
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~-pf~~~~~~~~~~~i~~~~~~~~~~~  230 (330)
T cd07834         152 GVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKP-LFPGRDYIDQLNLIVEVLGTPSEED  230 (330)
T ss_pred             eecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCC-CcCCCCHHHHHHHHHHhcCCCChhH
Confidence            7654321  1123345677787776532       22     777  777 533 222111100   00000        


Q ss_pred             -----------ccc--cCCCCC----CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH--HHHhh
Q 044211          243 -----------LIM--GDRSCS----GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK--TQANV  288 (292)
Q Consensus       243 -----------~~~--~~~~~~----~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~--L~~l~  288 (292)
                                 .+.  +.....    .....+..+.+++.+||+.+|++|| +.+++..  ++.++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~  296 (330)
T cd07834         231 LKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLH  296 (330)
T ss_pred             hhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhc
Confidence                       000  000000    0012456789999999999999999 9999875  55443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.96  E-value=7.4e-29  Score=187.03  Aligned_cols=227  Identities=13%  Similarity=0.141  Sum_probs=167.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC--CCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE--SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|.||+||+|+.+.       +++.||+|.+..  .+..-....++|+.+++.+.|.|||+++++...+..+.+|+|||.
T Consensus        12 egtygtvfkarn~~-------t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~cd   84 (292)
T KOG0662|consen   12 EGTYGTVFKARNRE-------THEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCD   84 (292)
T ss_pred             CCcceeeEecccCC-------ccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhh
Confidence            89999999999876       899999999754  344556788999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      + +|..+..      .-.+.++...+..++.|+++||.|+|   +++++|||+||.|.||+.+|.+|++|||+++-+.-.
T Consensus        85 q-dlkkyfd------slng~~d~~~~rsfmlqllrgl~fch---shnvlhrdlkpqnllin~ngelkladfglarafgip  154 (292)
T KOG0662|consen   85 Q-DLKKYFD------SLNGDLDPEIVRSFMLQLLRGLGFCH---SHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIP  154 (292)
T ss_pred             H-HHHHHHH------hcCCcCCHHHHHHHHHHHHhhhhhhh---hhhhhhccCCcceEEeccCCcEEecccchhhhcCCc
Confidence            6 9988884      33567899999999999999999999   999999999999999999999999999999877533


Q ss_pred             CccchhhhhcccccccccccCCC------------CeE--EEccchhhhhhccchhhhcc--------------cc----
Q 044211          196 ETHISELLSGLRAFDLARLNEDD------------GYV--VLLDHIKKYFEEDRLNEIID--------------PL----  243 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~~~~~~~~~~~~~~~~~~--------------~~----  243 (292)
                      - ...+.-+-|.+|.+|.+...+            |++  |+....+|.+....+.+.+.              +.    
T Consensus       155 v-rcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~l  233 (292)
T KOG0662|consen  155 V-RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKL  233 (292)
T ss_pred             e-EeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccccC
Confidence            2 122333446677555444322            888  88722222222221111111              00    


Q ss_pred             ----cccCCCCCC-----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          244 ----IMGDRSCSG-----NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       244 ----~~~~~~~~~-----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                          ..+.++...     .+.....-.+++.+.+.-+|.+|. +.+.++
T Consensus       234 pdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalq  282 (292)
T KOG0662|consen  234 PDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQ  282 (292)
T ss_pred             CCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhc
Confidence                011111100     023344567888899999999999 887664

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.96  E-value=1.1e-28  Score=214.81  Aligned_cols=226  Identities=17%  Similarity=0.143  Sum_probs=165.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC-----cceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ-----IPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-----~~~lv~  111 (292)
                      +|+||.||+|....       +++.||+|.++.. .......+.+|+.++++++|+||+++++++....     ..++++
T Consensus        15 ~G~~g~vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~   87 (336)
T cd07849          15 EGAYGMVCSATHKP-------TGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVYIVQ   87 (336)
T ss_pred             ecCCeEEEEEEEcC-------CCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEEEEe
Confidence            89999999999865       8899999998643 2334567889999999999999999999876533     478999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+. ++|.+.+        ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++..
T Consensus        88 e~~~-~~l~~~~--------~~~~l~~~~~~~i~~ql~~aL~~LH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~  155 (336)
T cd07849          88 ELME-TDLYKLI--------KTQHLSNDHIQYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLARI  155 (336)
T ss_pred             hhcc-cCHHHHH--------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEECcccceee
Confidence            9998 4888887        2456899999999999999999999   89999999999999999999999999999876


Q ss_pred             cCCCCccc--hhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccc------------------h
Q 044211          192 IPEGETHI--SELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDR------------------L  236 (292)
Q Consensus       192 ~~~~~~~~--~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~------------------~  236 (292)
                      ........  .....|+..|++|+...       ++     |++  +|+ |+. ++.....                  .
T Consensus       156 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~-~f~~~~~~~~~~~~~~~~~~~~~~~~  234 (336)
T cd07849         156 ADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRP-LFPGKDYLHQLNLILGVLGTPSQEDL  234 (336)
T ss_pred             ccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHcCCCCHHHH
Confidence            64322211  12345778888887532       11     888  888 653 2221110                  0


Q ss_pred             hhhcccc----cc---cCCCCCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          237 NEIIDPL----IM---GDRSCSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       237 ~~~~~~~----~~---~~~~~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+....    +.   .....+.   .+..+..+.+++.+||+.||++|| +.+++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~h  292 (336)
T cd07849         235 NCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAH  292 (336)
T ss_pred             HHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            0000000    00   0000000   012346789999999999999999 9999876

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.96  E-value=1.6e-28  Score=213.85  Aligned_cols=231  Identities=16%  Similarity=0.146  Sum_probs=168.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecC-----CcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET-----QIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-----~~~~lv  110 (292)
                      .|+||.||+|....       +++.||+|.++..  .......+.+|+.+++.++|+||+++++++...     ...+++
T Consensus        15 ~G~~~~vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv   87 (337)
T cd07858          15 RGAYGIVCSAKNSE-------TNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIV   87 (337)
T ss_pred             cCCCeEEEEEEecC-------CCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEEEE
Confidence            89999999999865       8999999998653  233445678899999999999999999988654     247999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +||+. ++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.
T Consensus        88 ~e~~~-~~L~~~~~-------~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~  156 (337)
T cd07858          88 YELMD-TDLHQIIR-------SSQTLSDDHCQYFLYQLLRGLKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGLAR  156 (337)
T ss_pred             EeCCC-CCHHHHHh-------cCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECcCcccc
Confidence            99997 69998883       3456999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccc--------------------
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDR--------------------  235 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~--------------------  235 (292)
                      ...... .......++..|++|+...       ++     |++  +|+ |+. ++.....                    
T Consensus       157 ~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T cd07858         157 TTSEKG-DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKP-LFPGKDYVHQLKLITELLGSPSEEDLG  234 (337)
T ss_pred             ccCCCc-ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCC-CCCCCChHHHHHHHHHHhCCCChHHhh
Confidence            664332 1122334677787776432       22     888  777 543 3211100                    


Q ss_pred             ------hhhhcccccccCCCC--CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH--HHHhh
Q 044211          236 ------LNEIIDPLIMGDRSC--SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK--TQANV  288 (292)
Q Consensus       236 ------~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~--L~~l~  288 (292)
                            ....+........+.  ...+..++.+.+++.+||+.+|++|| +.++++.  |+.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~  298 (337)
T cd07858         235 FIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLH  298 (337)
T ss_pred             hcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhc
Confidence                  000000000000000  00124567889999999999999999 9999876  55443

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.96  E-value=4.7e-28  Score=205.59  Aligned_cols=226  Identities=17%  Similarity=0.145  Sum_probs=165.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|+||.||+|....       +++.|++|.+..... .......+|+..+++++ |+||+++++++..++..++||||+ 
T Consensus         9 ~g~~g~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-   80 (283)
T cd07830           9 DGTFGSVYLARNKE-------TGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM-   80 (283)
T ss_pred             cCCceEEEEEEECC-------CCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC-
Confidence            79999999999865       688999999865422 22234567999999998 999999999999999999999999 


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+.+...     ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++......
T Consensus        81 ~~~l~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~  152 (283)
T cd07830          81 EGNLYQLMKDR-----KGKPFSESVIRSIIYQILQGLAHIH---KHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSR  152 (283)
T ss_pred             CCCHHHHHHhc-----ccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCCEEEeecccceeccCC
Confidence            68999988321     1357899999999999999999999   899999999999999999999999999999866443


Q ss_pred             CccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhh----------------------
Q 044211          196 ETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNE----------------------  238 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~----------------------  238 (292)
                      ..  .....++..|++|+...       ++     |++  +|+ |+. ++........                      
T Consensus       153 ~~--~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (283)
T cd07830         153 PP--YTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRP-LFPGSSEIDQLYKICSVLGTPTKQDWPEGYKL  229 (283)
T ss_pred             CC--cCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCC-ccCCCChHHHHHHHHHhcCCCChhhhhhHhhh
Confidence            22  12345677787777532       22     887  887 643 2211111000                      


Q ss_pred             --hcccccccCCCCCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          239 --IIDPLIMGDRSCSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       239 --~~~~~~~~~~~~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                        .++..+....+...   ....+..+.+++.+||+.||++|| +.|++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         230 ASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             hccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence              00000000000000   001246799999999999999999 999875

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.95  E-value=4.6e-28  Score=214.34  Aligned_cols=169  Identities=18%  Similarity=0.179  Sum_probs=141.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-C-----CCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-H-----RCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h-----~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.|-+|+...       +++.||||+++.. .....+-..|+.+|..|+ |     -|+|+++++|...+.+++|+
T Consensus       196 kGtFGQVvk~~d~~-------T~e~VAIKIiKN~-k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciVf  267 (586)
T KOG0667|consen  196 KGSFGQVVKAYDHK-------TGEIVAIKIIKNK-KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIVF  267 (586)
T ss_pred             ccccceeEEEEecC-------CCcEEEEEeeccC-hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeeee
Confidence            99999999999987       9999999999987 345677889999999996 4     38999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC--CCceEEeecccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE--ENVAKLFDFSFS  189 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~--~~~~kl~Dfg~a  189 (292)
                      |.+.. ||.++++.+     .-..++...+..++.||+.||.+||   ..+|||+||||+|||+.+  ...+|++|||.|
T Consensus       268 ELL~~-NLYellK~n-----~f~Glsl~~ir~~~~Qil~~L~~L~---~l~IIHcDLKPENILL~~~~r~~vKVIDFGSS  338 (586)
T KOG0667|consen  268 ELLST-NLYELLKNN-----KFRGLSLPLVRKFAQQILTALLFLH---ELGIIHCDLKPENILLKDPKRSRIKVIDFGSS  338 (586)
T ss_pred             hhhhh-hHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCChhheeeccCCcCceeEEecccc
Confidence            99995 999999644     4566999999999999999999999   999999999999999974  357999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccC------CC-----CeE--EEc-cch
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHI  227 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~  227 (292)
                      +.....-.    ...-+.-|.+||+.-      +.     |||  ||+ |.+
T Consensus       339 c~~~q~vy----tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~P  386 (586)
T KOG0667|consen  339 CFESQRVY----TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEP  386 (586)
T ss_pred             cccCCcce----eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCcc
Confidence            87754322    233344555555443      33     888  999 876

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.95  E-value=3.3e-28  Score=204.08  Aligned_cols=227  Identities=15%  Similarity=0.184  Sum_probs=167.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-----CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-----KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||++.+..       .+..+++|.++..     .......+..|+.++++++||||+++++++......++|+|
T Consensus        10 ~g~~g~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (260)
T cd08222          10 KGSFGTVYLVKDKK-------AVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIITE   82 (260)
T ss_pred             CCCCceEEEEEecC-------CCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEEE
Confidence            89999999998864       5556666666532     22233457789999999999999999999998889999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+++++|.+++....   .....+++..+..++.|++.||.|||   +.+++|+||+|+||+++. +.++|+|||++...
T Consensus        83 ~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~  155 (260)
T cd08222          83 YCEGRDLDCKLEELK---HTGKTLSENQVCEWFIQLLLGVHYMH---QRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLL  155 (260)
T ss_pred             eCCCCCHHHHHHHHh---hcccccCHHHHHHHHHHHHHHHHHHH---HcCccccCCChhheEeec-CCEeecccCceeec
Confidence            999999999885432   23467899999999999999999999   899999999999999975 57999999998776


Q ss_pred             CCCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          193 PEGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ..... ......|+..|.+|+...      ++     |++  +|+ +.. ++.. ............+..+. .+...+.
T Consensus       156 ~~~~~-~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~  231 (260)
T cd08222         156 MGSCD-LATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAH-AFEG-QNFLSVVLRIVEGPTPS-LPETYSR  231 (260)
T ss_pred             CCCcc-cccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCC-CCCC-ccHHHHHHHHHcCCCCC-CcchhcH
Confidence            44322 122345677787766532      22     877  777 443 3322 22222222222222222 1246778


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+.+++.+||+.+|++|| +.++++
T Consensus       232 ~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         232 QLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHhh
Confidence            999999999999999999 999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.95  E-value=3.5e-28  Score=211.48  Aligned_cols=227  Identities=15%  Similarity=0.146  Sum_probs=165.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcch--------------HHHHHHHHHHHHhcCCCCccceeeeeec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRT--------------YDCCINNIVYASQMIHRCIFKLIGCCLE  103 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~--------------~~~~~~e~~~l~~l~h~niv~~~~~~~~  103 (292)
                      .|+||.||+|....       +++.||+|.+.......              ...+.+|+.++++++|+||+++++++..
T Consensus        19 ~G~~g~vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   91 (335)
T PTZ00024         19 EGTYGKVEKAYDTL-------TGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVE   91 (335)
T ss_pred             CCCceeEEEEEECC-------CCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEec
Confidence            89999999999765       88999999986432111              1247789999999999999999999999


Q ss_pred             CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEE
Q 044211          104 TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKL  183 (292)
Q Consensus       104 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl  183 (292)
                      .+..++||||+. |+|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|
T Consensus        92 ~~~~~lv~e~~~-~~l~~~l~-------~~~~~~~~~~~~~~~ql~~aL~~LH---~~~i~H~dl~~~nill~~~~~~kl  160 (335)
T PTZ00024         92 GDFINLVMDIMA-SDLKKVVD-------RKIRLTESQVKCILLQILNGLNVLH---KWYFMHRDLSPANIFINSKGICKI  160 (335)
T ss_pred             CCcEEEEEeccc-cCHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHeEECCCCCEEE
Confidence            999999999998 69999983       3456899999999999999999999   899999999999999999999999


Q ss_pred             eecccccccCCCCc-------------cchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccc
Q 044211          184 FDFSFSISIPEGET-------------HISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDR  235 (292)
Q Consensus       184 ~Dfg~a~~~~~~~~-------------~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~  235 (292)
                      +|||++.....+..             .......++..|.+|+...       ++     |++  +|+ |.. ++.....
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~-p~~~~~~  239 (335)
T PTZ00024        161 ADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKP-LFPGENE  239 (335)
T ss_pred             CCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCH
Confidence            99999876542111             0111233566787777542       12     888  888 543 2222111


Q ss_pred             hh---hhccc-----------c-----ccc-CCCCCC-----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          236 LN---EIIDP-----------L-----IMG-DRSCSG-----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       236 ~~---~~~~~-----------~-----~~~-~~~~~~-----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..   .++..           .     ... ....+.     ....+..+.+++.+||+.+|++|| +.+++..
T Consensus       240 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~  313 (335)
T PTZ00024        240 IDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKH  313 (335)
T ss_pred             HHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcC
Confidence            10   00000           0     000 000000     012356788999999999999999 9999863

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.95  E-value=3.6e-28  Score=200.79  Aligned_cols=224  Identities=21%  Similarity=0.254  Sum_probs=172.2

Q ss_pred             CCCeeEeeecCCCCccCccCCeEEEEEeecCCCcch-HHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCCC
Q 044211           40 NGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRT-YDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGS  118 (292)
Q Consensus        40 ~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~gs  118 (292)
                      +||.||+|.+..       +++.+++|.+....... .+.+.+|+..+++++|+||+++++++......++++||+.+++
T Consensus         1 ~~g~v~~~~~~~-------~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~   73 (244)
T smart00220        1 SFGKVYLARDKK-------TGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGD   73 (244)
T ss_pred             CceEEEEEEECC-------CCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCC
Confidence            589999999964       68999999997654433 6789999999999999999999999999889999999999999


Q ss_pred             hhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCcc
Q 044211          119 LADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH  198 (292)
Q Consensus       119 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~~  198 (292)
                      |.+++.       ....++...+..++.+++.++.+||   ..+++|+||+|+||+++.++.++|+|||.+.......  
T Consensus        74 L~~~~~-------~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~--  141 (244)
T smart00220       74 LFDLLK-------KRGRLSEDEARFYARQILSALEYLH---SNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG--  141 (244)
T ss_pred             HHHHHH-------hccCCCHHHHHHHHHHHHHHHHHHH---HcCeecCCcCHHHeEECCCCcEEEccccceeeecccc--
Confidence            999993       2223889999999999999999999   8899999999999999999999999999998775432  


Q ss_pred             chhhhhcccccccccccC------CC-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchH-HHHHHHHHH
Q 044211          199 ISELLSGLRAFDLARLNE------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQ-QLQAFAHLI  264 (292)
Q Consensus       199 ~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~li  264 (292)
                      ......++..|.+|+...      ++     |++  +++....++..........+....+......... .+..+.+++
T Consensus       142 ~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  221 (244)
T smart00220      142 LLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLI  221 (244)
T ss_pred             ccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHH
Confidence            123345666776665432      23     877  7773333333312333333322222222222111 667899999


Q ss_pred             hHhcCCCCCCCC-HHHHHH
Q 044211          265 FECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       265 ~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+||..+|++|| +.++++
T Consensus       222 ~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      222 RKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             HHHccCCchhccCHHHHhh
Confidence            999999999999 999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.95  E-value=3.7e-29  Score=199.14  Aligned_cols=247  Identities=17%  Similarity=0.182  Sum_probs=189.2

Q ss_pred             ccccccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhc-CCCCcccee
Q 044211           22 PIRSFCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQM-IHRCIFKLI   98 (292)
Q Consensus        22 ~~~~~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~   98 (292)
                      .+..|+-+.++..... .|+||+|++-.++.       .|+..|||.+..... ...++++.|.+...+- +.||||+++
T Consensus        57 ~~~~F~~~~Lqdlg~iG~G~fG~V~KM~hk~-------sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfy  129 (361)
T KOG1006|consen   57 HLHTFTSDNLQDLGEIGNGAFGTVNKMLHKP-------SGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFY  129 (361)
T ss_pred             cccccccchHHHHHHhcCCcchhhhhhhcCc-------cCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHh
Confidence            3446777777776665 89999999999987       999999999976533 4456788888877666 689999999


Q ss_pred             eeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC
Q 044211           99 GCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE  178 (292)
Q Consensus        99 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~  178 (292)
                      |++...+..|+.||.++ .||..+.+....  .+...+++.-+-.|.--.+.||.||-.  ...|+|||+||+|||++..
T Consensus       130 Ga~F~EGdcWiCMELMd-~SlDklYk~vy~--vq~~~ipE~Ilg~ItvatV~AL~yLK~--~lkiIHRDvKPSNILldr~  204 (361)
T KOG1006|consen  130 GALFSEGDCWICMELMD-ISLDKLYKRVYS--VQKSRIPENILGHITVATVDALDYLKE--ELKIIHRDVKPSNILLDRH  204 (361)
T ss_pred             hhhhcCCceeeeHHHHh-hhHHHHHHHHHH--HHhccCcHhhhhheeeeehhHHHHHHH--HhhhhhccCChhheEEecC
Confidence            99999999999999998 598877754332  345678888888888889999999986  6799999999999999999


Q ss_pred             CceEEeecccccccCCCCccchhhhhcccccccccccCCC-------------CeE--EEc-cchhhhhhccchhhhccc
Q 044211          179 NVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-------------GYV--VLL-DHIKKYFEEDRLNEIIDP  242 (292)
Q Consensus       179 ~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-------------Gvi--el~-~~~~~~~~~~~~~~~~~~  242 (292)
                      |.+||||||++-++.+.  .+.+.-.|...|++|+-...+             |++  |+. |+. |+..=.++.+.+..
T Consensus       205 G~vKLCDFGIcGqLv~S--iAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~f-Pyr~w~svfeql~~  281 (361)
T KOG1006|consen  205 GDVKLCDFGICGQLVDS--IAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNF-PYRKWDSVFEQLCQ  281 (361)
T ss_pred             CCEeeecccchHhHHHH--HHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCC-CcchHHHHHHHHHH
Confidence            99999999999877542  233445688899877654433             888  888 554 33222223333334


Q ss_pred             ccccCCCCCCc-h---HHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          243 LIMGDRSCSGN-Q---QQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       243 ~~~~~~~~~~~-~---~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ...+.+|.... .   +....+..+|..|+-+|.+.|| ..++.+.
T Consensus       282 Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~~  327 (361)
T KOG1006|consen  282 VVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKKF  327 (361)
T ss_pred             HHcCCCCeecCcccccccCHHHHHHHHHHhhcccccCcchhhhhcC
Confidence            45555544322 2   3577899999999999999999 9887653

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.95  E-value=4.8e-28  Score=211.26  Aligned_cols=227  Identities=14%  Similarity=0.152  Sum_probs=164.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC------cceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ------IPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~l  109 (292)
                      +|+||.||+|.+..       +++.||+|.+...  .......+.+|+.+++.++|+||+++++++....      ..++
T Consensus        25 ~g~~g~v~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~l   97 (342)
T cd07879          25 SGAYGSVCSAIDKR-------TGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYL   97 (342)
T ss_pred             ecCCeEEEEEEeCC-------CCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEEE
Confidence            89999999999864       8899999998653  2223456889999999999999999999987543      3589


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      |+||+.. +|..++         ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++
T Consensus        98 v~e~~~~-~l~~~~---------~~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dlkp~NIll~~~~~~kL~dfg~~  164 (342)
T cd07879          98 VMPYMQT-DLQKIM---------GHPLSEDKVQYLVYQMLCGLKYIH---SAGIIHRDLKPGNLAVNEDCELKILDFGLA  164 (342)
T ss_pred             Eeccccc-CHHHHH---------cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCCCC
Confidence            9999974 777666         245888999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhh---hcc----------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNE---IID----------  241 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~---~~~----------  241 (292)
                      .......    ....++..|++|+....       +     |++  ||+ |+. ++........   .+.          
T Consensus       165 ~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~  239 (342)
T cd07879         165 RHADAEM----TGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKT-LFKGKDYLDQLTQILKVTGVPGPEFV  239 (342)
T ss_pred             cCCCCCC----CCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHhcCCCCHHHH
Confidence            7653321    22356777877775322       2     888  888 654 2222111000   000          


Q ss_pred             ----c----ccccCCC-CCC------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH--HHHhhh
Q 044211          242 ----P----LIMGDRS-CSG------NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK--TQANVC  289 (292)
Q Consensus       242 ----~----~~~~~~~-~~~------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~--L~~l~~  289 (292)
                          .    ......+ .+.      .+..+..+.+++.+||+.||++|| +.+++..  ++.++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         240 QKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             HHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccc
Confidence                0    0000000 000      012345788999999999999999 9999855  665543

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.95  E-value=2.6e-28  Score=217.11  Aligned_cols=163  Identities=24%  Similarity=0.319  Sum_probs=140.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC------cceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ------IPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~lv  110 (292)
                      +|+||.||+|..+.       +|..||||.++.. .....+...+|+++|++|+|+|||+++++=....      ...+|
T Consensus        23 ~Ga~g~V~rgrnke-------tG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlv   95 (732)
T KOG4250|consen   23 KGAFGNVYRGRNKE-------TGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLV   95 (732)
T ss_pred             CCccceeeeecccc-------cccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEE
Confidence            99999999999877       9999999999874 3345577889999999999999999998866533      46899


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec--CCC--ceEEeec
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN--EEN--VAKLFDF  186 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~--~~~--~~kl~Df  186 (292)
                      ||||.+|||...++    ...+...+++..++.+..+++.||.|||   .++|+||||||.||++-  .+|  ..||+||
T Consensus        96 mEyC~gGsL~~~L~----~PEN~~GLpE~e~l~lL~d~~~al~~Lr---En~IvHRDlKP~NIvl~~Gedgq~IyKLtDf  168 (732)
T KOG4250|consen   96 MEYCSGGSLRKVLN----SPENAYGLPESEFLDLLSDLVSALRHLR---ENGIVHRDLKPGNIVLQIGEDGQSIYKLTDF  168 (732)
T ss_pred             EeecCCCcHHHHhc----CcccccCCCHHHHHHHHHHHHHHHHHHH---HcCceeccCCCCcEEEeecCCCceEEeeecc
Confidence            99999999999993    2245567999999999999999999999   99999999999999996  333  5999999


Q ss_pred             ccccccCCCCccchhhhhcccccccccccC
Q 044211          187 SFSISIPEGETHISELLSGLRAFDLARLNE  216 (292)
Q Consensus       187 g~a~~~~~~~~~~~~~~~g~~~y~~~~~~~  216 (292)
                      |.|+.+..++  ...+..||..|..|+.-+
T Consensus       169 G~Arel~d~s--~~~S~vGT~~YLhPel~E  196 (732)
T KOG4250|consen  169 GAARELDDNS--LFTSLVGTEEYLHPELYE  196 (732)
T ss_pred             cccccCCCCC--eeeeecCchhhcChHHHh
Confidence            9999997765  456789999998887776

>PTZ00284 protein kinase; Provisional

Probab=99.95  E-value=4.6e-28  Score=219.71  Aligned_cols=221  Identities=15%  Similarity=0.179  Sum_probs=156.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCC------CCccceeeeeecC-CcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIH------RCIFKLIGCCLET-QIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h------~niv~~~~~~~~~-~~~~lv  110 (292)
                      +|+||.||+|.+..       +++.||||+++... ........|+.+++.++|      .+++.+++++... ...++|
T Consensus       139 ~G~fg~V~~a~~~~-------~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv  210 (467)
T PTZ00284        139 EGTFGKVVEAWDRK-------RKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIV  210 (467)
T ss_pred             eccCEEEEEEEEcC-------CCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEE
Confidence            89999999999865       78899999996532 223445667777777754      4588888888754 467889


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCcccCCCCCCceEecCCC----------
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP-RPVIFRDFKLSNILFNEEN----------  179 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-~~i~H~dlk~~nili~~~~----------  179 (292)
                      ||++ +++|.+++.       ....+++..+..++.|++.||.|||   . .+|+||||||+|||++.++          
T Consensus       211 ~~~~-g~~l~~~l~-------~~~~l~~~~~~~i~~qi~~aL~yLH---~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~  279 (467)
T PTZ00284        211 MPKY-GPCLLDWIM-------KHGPFSHRHLAQIIFQTGVALDYFH---TELHLMHTDLKPENILMETSDTVVDPVTNRA  279 (467)
T ss_pred             Eecc-CCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---hcCCeecCCCCHHHEEEecCCcccccccccc
Confidence            9988 568998883       3356899999999999999999999   6 5999999999999998765          


Q ss_pred             ------ceEEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchh--
Q 044211          180 ------VAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLN--  237 (292)
Q Consensus       180 ------~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~--  237 (292)
                            .+||+|||.+.....    ......||..|++||+....           ||+  ||+ |+. +|.......  
T Consensus       280 ~~~~~~~vkl~DfG~~~~~~~----~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~-pf~~~~~~~~~  354 (467)
T PTZ00284        280 LPPDPCRVRICDLGGCCDERH----SRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKL-LYDTHDNLEHL  354 (467)
T ss_pred             cCCCCceEEECCCCccccCcc----ccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCChHHHH
Confidence                  499999998764322    12346789999998875432           988  888 654 332211100  


Q ss_pred             hhccccc-----------------------ccCCCCCCc--------------hHHHHHHHHHHhHhcCCCCCCCC-HHH
Q 044211          238 EIIDPLI-----------------------MGDRSCSGN--------------QQQLQAFAHLIFECVNESPVDRP-MVD  279 (292)
Q Consensus       238 ~~~~~~~-----------------------~~~~~~~~~--------------~~~~~~l~~li~~Cl~~dP~~RP-~~e  279 (292)
                      ..+...+                       ....+...+              ....+.+.+||.+||+.||++|| +.|
T Consensus       355 ~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e  434 (467)
T PTZ00284        355 HLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQ  434 (467)
T ss_pred             HHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHH
Confidence            0000000                       000000000              01235678999999999999999 999


Q ss_pred             HHH
Q 044211          280 VAK  282 (292)
Q Consensus       280 l~~  282 (292)
                      +++
T Consensus       435 ~L~  437 (467)
T PTZ00284        435 MTT  437 (467)
T ss_pred             Hhc
Confidence            986

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.95  E-value=5.9e-28  Score=199.98  Aligned_cols=206  Identities=13%  Similarity=0.063  Sum_probs=154.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|.||.||++....       +++.||+|.+....     .+.+|...+....||||+++++++...+..+++|||+++|
T Consensus         3 ~g~~~~v~~~~~~~-------~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   70 (237)
T cd05576           3 LGVIDKVLLVMDTR-------TQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGG   70 (237)
T ss_pred             ccccceEEEEEEcc-------CCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCC
Confidence            38999999999976       89999999987653     2334555555667999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.+       ...+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.++++|||.+....... 
T Consensus        71 ~L~~~l~~-------~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~-  139 (237)
T cd05576          71 KLWSHISK-------FLNIPEECVKRWAAEMVVALDALH---REGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSC-  139 (237)
T ss_pred             CHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCEEEecccchhcccccc-
Confidence            99999842       335899999999999999999999   8999999999999999999999999999876554321 


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                         ....++..|++|+...      ++     |++  ||+ |..+ +... . .. +....    ....+...++.+.++
T Consensus       140 ---~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~-~~~~-~-~~-~~~~~----~~~~~~~~~~~~~~l  208 (237)
T cd05576         140 ---DGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTL-VECH-P-SG-INTHT----TLNIPEWVSEEARSL  208 (237)
T ss_pred             ---ccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcch-hhcC-c-hh-ccccc----ccCCcccCCHHHHHH
Confidence               1223455676666542      22     888  888 6542 2111 0 00 00000    000112345689999


Q ss_pred             HhHhcCCCCCCCC-H
Q 044211          264 IFECVNESPVDRP-M  277 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~  277 (292)
                      +.+||+.||++|| +
T Consensus       209 i~~~l~~dp~~R~~~  223 (237)
T cd05576         209 LQQLLQFNPTERLGA  223 (237)
T ss_pred             HHHHccCCHHHhcCC
Confidence            9999999999999 7

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.95  E-value=8.2e-28  Score=203.82  Aligned_cols=227  Identities=17%  Similarity=0.171  Sum_probs=166.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|....       +++.||+|.+...  .....+.+..|+..+++++|+|++++++++...+..++|+||+.
T Consensus         9 ~g~~~~vy~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   81 (282)
T cd07829           9 EGTYGVVYKARDKK-------TGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCD   81 (282)
T ss_pred             ccCcceEEEeeecC-------CCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcC
Confidence            78999999999975       7999999998764  23345678899999999999999999999999999999999998


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                       ++|.+++.+.      ...+++..+..++.+++.||.|||   ..+++|+||+|+||++++++.++|+|||++......
T Consensus        82 -~~l~~~i~~~------~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~  151 (282)
T cd07829          82 -MDLKKYLDKR------PGPLSPNLIKSIMYQLLRGLAYCH---SHRILHRDLKPQNILINRDGVLKLADFGLARAFGIP  151 (282)
T ss_pred             -cCHHHHHHhh------ccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChheEEEcCCCCEEEecCCcccccCCC
Confidence             5999999422      246899999999999999999999   889999999999999999999999999999776433


Q ss_pred             Cccchhhhhccccccccccc-------CCC-----CeE--EEccchhhhhhccchhh---h-------------------
Q 044211          196 ETHISELLSGLRAFDLARLN-------EDD-----GYV--VLLDHIKKYFEEDRLNE---I-------------------  239 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~-------~~~-----Gvi--el~~~~~~~~~~~~~~~---~-------------------  239 (292)
                      .. ......++..|++|+..       .++     |++  |++.+..++........   +                   
T Consensus       152 ~~-~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (282)
T cd07829         152 LR-TYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLP  230 (282)
T ss_pred             cc-ccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccc
Confidence            21 11222345566666543       222     888  77722333221111000   0                   


Q ss_pred             -cccccccCCCCC---CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          240 -IDPLIMGDRSCS---GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       240 -~~~~~~~~~~~~---~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                       .+..........   ..+..+..+.+++.+||+.||++|| +.+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         231 DYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             cccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence             000000000000   0012356799999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.95  E-value=4.9e-28  Score=211.20  Aligned_cols=225  Identities=18%  Similarity=0.238  Sum_probs=163.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecC-------------
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLET-------------  104 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-------------  104 (292)
                      .|+||.||+|....       +++.||+|.+........+.+.+|+.++++++||||+++++++...             
T Consensus        15 ~g~~g~vy~~~~~~-------~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~   87 (342)
T cd07854          15 CGSNGLVFSAVDSD-------CDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTE   87 (342)
T ss_pred             CCCCEEEEEEEECC-------CCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccc
Confidence            79999999999875       8899999998776555667789999999999999999999877653             


Q ss_pred             -CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec-CCCceE
Q 044211          105 -QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN-EENVAK  182 (292)
Q Consensus       105 -~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~-~~~~~k  182 (292)
                       ...++|+||+. ++|.+++.        ...+++..+..++.|++.||.|||   +.+++|+||+|+||+++ .++.++
T Consensus        88 ~~~~~lv~e~~~-~~L~~~~~--------~~~l~~~~~~~~~~qi~~aL~~LH---~~givH~dikp~Nili~~~~~~~k  155 (342)
T cd07854          88 LNSVYIVQEYME-TDLANVLE--------QGPLSEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANVFINTEDLVLK  155 (342)
T ss_pred             cceEEEEeeccc-ccHHHHHH--------cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCceEE
Confidence             24689999998 59988882        346889999999999999999999   89999999999999998 556799


Q ss_pred             EeecccccccCCCCccc--hhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhh---hcc-
Q 044211          183 LFDFSFSISIPEGETHI--SELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNE---IID-  241 (292)
Q Consensus       183 l~Dfg~a~~~~~~~~~~--~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~---~~~-  241 (292)
                      |+|||.+..........  .....++..|.+|+...       ++     |++  +|+ |+. |+........   ..+ 
T Consensus       156 l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~-pf~~~~~~~~~~~~~~~  234 (342)
T cd07854         156 IGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKP-LFAGAHELEQMQLILES  234 (342)
T ss_pred             ECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHh
Confidence            99999997653221111  12234677787777431       22     888  888 553 3321111000   000 


Q ss_pred             -----------------cccc--cCCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 -----------------PLIM--GDRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 -----------------~~~~--~~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                                       ....  ...+...    ....+..+.+++.+||+.||.+|| +.+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         235 VPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             cCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence                             0000  0000000    012346788999999999999999 999985

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.3e-29  Score=199.07  Aligned_cols=234  Identities=16%  Similarity=0.197  Sum_probs=166.2

Q ss_pred             HHhhCccCCCeeEeeecCCCCccCccCCeEEEEEee--cCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecC------
Q 044211           33 TTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKF--DESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLET------  104 (292)
Q Consensus        33 ~~~~~~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~--~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~------  104 (292)
                      ...+.+|.||.||+|..+.       +++.||+|+.  ...+.......++|+.+|..|.|+|++.++++|...      
T Consensus        22 ~~kigqGtfgeVFkAr~~n-------~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r   94 (376)
T KOG0669|consen   22 LAKIGQGTFGEVFKARSKN-------TGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNR   94 (376)
T ss_pred             HHhcCCchHHHHHHHhhcC-------ccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccc
Confidence            3334499999999999987       8889999884  334555667789999999999999999999988642      


Q ss_pred             --CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceE
Q 044211          105 --QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAK  182 (292)
Q Consensus       105 --~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~k  182 (292)
                        ..+++|+++|+. +|..++      ++....++...+.+++.++..||.|+|   ...|+|||+||.|+||+.+|.+|
T Consensus        95 ~r~t~ylVf~~ceh-DLaGlL------sn~~vr~sls~Ikk~Mk~Lm~GL~~iH---r~kilHRDmKaaNvLIt~dgilk  164 (376)
T KOG0669|consen   95 DRATFYLVFDFCEH-DLAGLL------SNRKVRFSLSEIKKVMKGLMNGLYYIH---RNKILHRDMKAANVLITKDGILK  164 (376)
T ss_pred             ccceeeeeHHHhhh-hHHHHh------cCccccccHHHHHHHHHHHHHHHHHHH---HhhHHhhcccHhhEEEcCCceEE
Confidence              237999999996 999999      344478999999999999999999999   99999999999999999999999


Q ss_pred             EeecccccccCCCC---ccchhhhhcccccccccccC-------CC-----CeE--EEc-cch-----------------
Q 044211          183 LFDFSFSISIPEGE---THISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHI-----------------  227 (292)
Q Consensus       183 l~Dfg~a~~~~~~~---~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~-----------------  227 (292)
                      |+|||+++.+....   .......+-|.+|.+++..-       ..     ||+  ||+ +..                 
T Consensus       165 lADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~L  244 (376)
T KOG0669|consen  165 LADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQL  244 (376)
T ss_pred             eeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHH
Confidence            99999997653221   11122334466775544321       11     777  777 332                 


Q ss_pred             --------hhhhhccchhhhc--ccccccCCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          228 --------KKYFEEDRLNEII--DPLIMGDRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       228 --------~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                              ||-..+..+-+.+  .+.-.+...-..    +..-.+...+|+.+.+..||.+|| +++++..
T Consensus       245 cGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh  315 (376)
T KOG0669|consen  245 CGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNH  315 (376)
T ss_pred             hccCCcccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhch
Confidence                    2222221111111  111111111000    011234677899999999999999 9988754

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.95  E-value=2.8e-27  Score=201.07  Aligned_cols=227  Identities=17%  Similarity=0.155  Sum_probs=162.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhc---CCCCccceeeeeecCCc-----c
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQM---IHRCIFKLIGCCLETQI-----P  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l---~h~niv~~~~~~~~~~~-----~  107 (292)
                      .|+||.||+|.+..       +++.||+|.++...  ......+.+|+.+++++   +|+||+++++++...+.     .
T Consensus         9 ~g~~~~v~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~   81 (287)
T cd07838           9 EGAYGTVYKARDLN-------TGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKL   81 (287)
T ss_pred             ccCceEEEEEEECC-------CCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCcee
Confidence            79999999999974       68999999987432  22234566788777666   59999999999988766     8


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++++||+.+ +|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.++|+|||
T Consensus        82 ~l~~e~~~~-~l~~~l~~~-----~~~~l~~~~~~~~~~~i~~al~~LH---~~~i~h~~l~~~nili~~~~~~~l~dfg  152 (287)
T cd07838          82 TLVFEHVDQ-DLATYLSKC-----PKPGLPPETIKDLMRQLLRGVDFLH---SHRIVHRDLKPQNILVTSDGQVKIADFG  152 (287)
T ss_pred             EEEehhccc-CHHHHHHHc-----cCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhEEEccCCCEEEeccC
Confidence            999999984 899888422     1235899999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccC------CC-----CeE--EEccchhhhhhccc---hhhhccc---------
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNE------DD-----GYV--VLLDHIKKYFEEDR---LNEIIDP---------  242 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~~~~~~~~~~~---~~~~~~~---------  242 (292)
                      ++........  .....++..|.+|+...      ++     |++  +|++..+++.....   ...+++.         
T Consensus       153 ~~~~~~~~~~--~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (287)
T cd07838         153 LARIYSFEMA--LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEW  230 (287)
T ss_pred             cceeccCCcc--cccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhc
Confidence            9977643322  12234566776666533      22     888  88832333322111   0001000         


Q ss_pred             ---------ccccCCCCC---CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 ---------LIMGDRSCS---GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 ---------~~~~~~~~~---~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                               ......+..   ..++.+..+.+++.+||+.||++|| +.+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         231 PRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             CCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence                     000000000   0123457788999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.95  E-value=1.5e-27  Score=203.92  Aligned_cols=226  Identities=14%  Similarity=0.087  Sum_probs=154.9

Q ss_pred             ccCCCeeEeeecCCCCccCccC---CeEEEEEeecCCCcchH-----------HHHHHHHHHHHhcCCCCccceeeeeec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQ---ERPVSVMKFDESKPRTY-----------DCCINNIVYASQMIHRCIFKLIGCCLE  103 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~---~~~vaiK~~~~~~~~~~-----------~~~~~e~~~l~~l~h~niv~~~~~~~~  103 (292)
                      +|+||.||+|.+..       +   +..+|+|..........           .....+...+..+.|+|++++++++..
T Consensus        22 ~G~fG~Vy~~~~~~-------~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~   94 (294)
T PHA02882         22 CGGFGCVYETQCAS-------DHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGCGSF   94 (294)
T ss_pred             cCCCceEEEEEEcC-------CcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEeeeE
Confidence            89999999999853       3   45677776443221111           112233345566789999999998765


Q ss_pred             CC----cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC
Q 044211          104 TQ----IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN  179 (292)
Q Consensus       104 ~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~  179 (292)
                      ..    ..++++|++. .++.+.+.       .....++..+..++.|++.||.|||   ..+++||||||+|||++.++
T Consensus        95 ~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiHrDiKp~Nill~~~~  163 (294)
T PHA02882         95 KRCRMYYRFILLEKLV-ENTKEIFK-------RIKCKNKKLIKNIMKDMLTTLEYIH---EHGISHGDIKPENIMVDGNN  163 (294)
T ss_pred             ecCCceEEEEEEehhc-cCHHHHHH-------hhccCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCC
Confidence            43    2367788876 37777773       2233567888999999999999999   89999999999999999999


Q ss_pred             ceEEeecccccccCCCCcc------chhhhhcccccccccccC------CC-----CeE--EEccchhhhhhccchh---
Q 044211          180 VAKLFDFSFSISIPEGETH------ISELLSGLRAFDLARLNE------DD-----GYV--VLLDHIKKYFEEDRLN---  237 (292)
Q Consensus       180 ~~kl~Dfg~a~~~~~~~~~------~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~~~~~~~~~~~~~---  237 (292)
                      .++|+|||+|..+..+...      ......||+.|++++...      ++     |++  ||+....|+.......   
T Consensus       164 ~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~  243 (294)
T PHA02882        164 RGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLI  243 (294)
T ss_pred             cEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHH
Confidence            9999999999876432211      122346889997776543      22     888  8883344443321111   


Q ss_pred             -----hhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHH
Q 044211          238 -----EIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       238 -----~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                           +.+.....+....   ..++..+.+++..||+.+|++|| +.++++.|
T Consensus       244 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        244 HAAKCDFIKRLHEGKIKI---KNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             HHhHHHHHHHhhhhhhcc---CCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence                 1112222221111   24567899999999999999999 99999876

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-28  Score=201.73  Aligned_cols=218  Identities=16%  Similarity=0.211  Sum_probs=178.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|.||.|-.++-+.       +++.||+|++++.-   ......-+.|-++|...+||.+..+--.|...+.+++||||.
T Consensus       178 kGTFGKVIL~rEKa-------t~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVMeya  250 (516)
T KOG0690|consen  178 KGTFGKVILCREKA-------TGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVMEYA  250 (516)
T ss_pred             CCccceEEEEeecc-------cCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEEEEc
Confidence            99999999999876       99999999998642   223334567889999999999998888888899999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .||.|.-.+       +....+++.....+..+|+.||-|||   ..+|+.||||.+|+|++++|.+||.|||+++.-..
T Consensus       251 nGGeLf~HL-------srer~FsE~RtRFYGaEIvsAL~YLH---s~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~  320 (516)
T KOG0690|consen  251 NGGELFFHL-------SRERVFSEDRTRFYGAEIVSALGYLH---SRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIK  320 (516)
T ss_pred             cCceEeeeh-------hhhhcccchhhhhhhHHHHHHhhhhh---hCCeeeeechhhhheeccCCceEeeecccchhccc
Confidence            999999888       33567888888999999999999999   89999999999999999999999999999975543


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      .. .....++||+.|.+|++.+..           ||+  ||+..+.||+... -..++...+.+....|.  ...++..
T Consensus       321 ~g-~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~d-h~kLFeLIl~ed~kFPr--~ls~eAk  396 (516)
T KOG0690|consen  321 YG-DTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKD-HEKLFELILMEDLKFPR--TLSPEAK  396 (516)
T ss_pred             cc-ceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccc-hhHHHHHHHhhhccCCc--cCCHHHH
Confidence            22 234668999999999998876           888  9994455665543 34444445555555444  5667889


Q ss_pred             HHHhHhcCCCCCCCC
Q 044211          262 HLIFECVNESPVDRP  276 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP  276 (292)
                      .|+...|.+||.+|-
T Consensus       397 tLLsGLL~kdP~kRL  411 (516)
T KOG0690|consen  397 TLLSGLLKKDPKKRL  411 (516)
T ss_pred             HHHHHHhhcChHhhc
Confidence            999999999999995

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=5.7e-28  Score=197.00  Aligned_cols=239  Identities=18%  Similarity=0.187  Sum_probs=186.3

Q ss_pred             cHHHHHHHhhC---ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeee
Q 044211           27 CAEELKTTHNA---IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCL  102 (292)
Q Consensus        27 ~~~~~~~~~~~---~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~  102 (292)
                      .++++...+..   +|+|+.|..+....       ++..||||++.+.......++.+|++++.+.+ |+||++++++|+
T Consensus        74 ~F~d~YkLt~e~LGeGAyasVqtcv~i~-------t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFE  146 (463)
T KOG0607|consen   74 KFEDMYKLTSELLGEGAYASVQTCVSIQ-------TGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFE  146 (463)
T ss_pred             hHHHHHHhHHHHhcCccceeeeeeeeec-------cchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhc
Confidence            35666666665   99999999998765       99999999998887777889999999999994 999999999999


Q ss_pred             cCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc--
Q 044211          103 ETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV--  180 (292)
Q Consensus       103 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~--  180 (292)
                      ++..+|+|+|-+.||+|.+.|       ..+.-+++..+.++..+|+.||.|||   .++|.||||||+|||..+.+.  
T Consensus       147 dd~~FYLVfEKm~GGplLshI-------~~~~~F~E~EAs~vvkdia~aLdFlH---~kgIAHRDlKPENiLC~~pn~vs  216 (463)
T KOG0607|consen  147 DDTRFYLVFEKMRGGPLLSHI-------QKRKHFNEREASRVVKDIASALDFLH---TKGIAHRDLKPENILCESPNKVS  216 (463)
T ss_pred             ccceEEEEEecccCchHHHHH-------HHhhhccHHHHHHHHHHHHHHHHHHh---hcCcccccCCccceeecCCCCcC
Confidence            999999999999999999999       45677999999999999999999999   999999999999999986543  


Q ss_pred             -eEEeecccccccCCCC------ccchhhhhcccccccccccCCC----------------CeE-EEc-cchhhhhhccc
Q 044211          181 -AKLFDFSFSISIPEGE------THISELLSGLRAFDLARLNEDD----------------GYV-VLL-DHIKKYFEEDR  235 (292)
Q Consensus       181 -~kl~Dfg~a~~~~~~~------~~~~~~~~g~~~y~~~~~~~~~----------------Gvi-el~-~~~~~~~~~~~  235 (292)
                       +|||||.+...+..+.      +....+.+|+..||+|++..--                ||| .++ ...+||...=.
T Consensus       217 PvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg  296 (463)
T KOG0607|consen  217 PVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCG  296 (463)
T ss_pred             ceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccC
Confidence             9999998876553221      1122456788899988876422                888 444 44444443211


Q ss_pred             h--------------hhhcccccccCCCCCC--chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          236 L--------------NEIIDPLIMGDRSCSG--NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       236 ~--------------~~~~~~~~~~~~~~~~--~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .              ..++...-.+.+.+|+  +-..+....+++...+..||.+|- +.+++.
T Consensus       297 ~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  297 ADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             CcCCccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccC
Confidence            1              1222233345555543  224466778999999999999999 887765

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.1e-27  Score=207.72  Aligned_cols=223  Identities=16%  Similarity=0.158  Sum_probs=173.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC--CCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE--SKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .||.+.||++...        +.+.||+|.+..  .+....+.|.+|+.+|.+| .|.+|++++++=..++.+||||||-
T Consensus       371 ~GGSSkV~kV~~s--------~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~G  442 (677)
T KOG0596|consen  371 SGGSSKVFKVLNS--------DKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMECG  442 (677)
T ss_pred             CCCcceeeeeecC--------CCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeecc
Confidence            8999999999996        788899998653  4556678899999999999 5999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +. +|...+++.      ....+...+..+..|++.|+.++|   +.+|||.||||.|+|+-+ |.+||.|||+|..+..
T Consensus       443 d~-DL~kiL~k~------~~~~~~~~lk~ywkqML~aV~~IH---~~gIVHSDLKPANFLlVk-G~LKLIDFGIA~aI~~  511 (677)
T KOG0596|consen  443 DI-DLNKILKKK------KSIDPDWFLKFYWKQMLLAVKTIH---QHGIVHSDLKPANFLLVK-GRLKLIDFGIANAIQP  511 (677)
T ss_pred             cc-cHHHHHHhc------cCCCchHHHHHHHHHHHHHHHHHH---HhceeecCCCcccEEEEe-eeEEeeeechhcccCc
Confidence            84 999999422      222333478889999999999999   999999999999999976 5999999999998877


Q ss_pred             CCccc-hhhhhcccccccccccCCC----------------------CeE--EEc-cchhhhhhcc----chhhhccccc
Q 044211          195 GETHI-SELLSGLRAFDLARLNEDD----------------------GYV--VLL-DHIKKYFEED----RLNEIIDPLI  244 (292)
Q Consensus       195 ~~~~~-~~~~~g~~~y~~~~~~~~~----------------------Gvi--el~-~~~~~~~~~~----~~~~~~~~~~  244 (292)
                      +.+.. ....+||+.||+||.....                      |||  +|+ |+. ||-.-.    .+..+.++.-
T Consensus       512 DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgkt-Pf~~~~n~~aKl~aI~~P~~  590 (677)
T KOG0596|consen  512 DTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKT-PFGQIINQIAKLHAITDPNH  590 (677)
T ss_pred             cccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCC-chHHHHHHHHHHHhhcCCCc
Confidence            65443 5678999999877654322                      888  788 765 332221    2233333322


Q ss_pred             ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          245 MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .-.++...   ....+.+++..||..||++|| ..|+++.
T Consensus       591 ~Iefp~~~---~~~~li~~mK~CL~rdPkkR~si~eLLqh  627 (677)
T KOG0596|consen  591 EIEFPDIP---ENDELIDVMKCCLARDPKKRWSIPELLQH  627 (677)
T ss_pred             cccccCCC---CchHHHHHHHHHHhcCcccCCCcHHHhcC
Confidence            22222221   122399999999999999999 9999864

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.95  E-value=2.1e-27  Score=207.21  Aligned_cols=221  Identities=14%  Similarity=0.139  Sum_probs=161.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC------cceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ------IPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~l  109 (292)
                      +|+||.||++....       +++.||+|.+...  .......+.+|+.+++.++||||+++++++....      ..++
T Consensus        25 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~l   97 (343)
T cd07880          25 SGAYGTVCSALDRR-------TGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYL   97 (343)
T ss_pred             ecCCeEEEEEEECC-------CCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceEEE
Confidence            89999999998865       8899999998643  2223456889999999999999999999987654      3489


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      |+||+ +++|.+++.        ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++
T Consensus        98 v~e~~-~~~l~~~~~--------~~~l~~~~~~~i~~qi~~al~~LH---~~gi~H~dlkp~Nill~~~~~~kl~dfg~~  165 (343)
T cd07880          98 VMPFM-GTDLGKLMK--------HEKLSEDRIQFLVYQMLKGLKYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLA  165 (343)
T ss_pred             EEecC-CCCHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccc
Confidence            99999 579998882        346899999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchh---hhcc----------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLN---EIID----------  241 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~---~~~~----------  241 (292)
                      .......    ....++..|++|+...       ++     |++  +++ |.. |+.......   ..+.          
T Consensus       166 ~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~  240 (343)
T cd07880         166 RQTDSEM----TGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKP-LFKGHDHLDQLMEIMKVTGTPSKEFV  240 (343)
T ss_pred             cccccCc----cccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHhcCCCCHHHH
Confidence            7654322    2234567777776432       22     887  777 654 222111100   0000          


Q ss_pred             cc---------cccCCCCC------CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 PL---------IMGDRSCS------GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 ~~---------~~~~~~~~------~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ..         ....+...      .....++.+.+++.+|++.||++|| +.+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~  297 (343)
T cd07880         241 QKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALA  297 (343)
T ss_pred             HhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            00         00000000      0013455789999999999999999 999884

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.95  E-value=3.6e-27  Score=204.91  Aligned_cols=227  Identities=17%  Similarity=0.171  Sum_probs=162.5

Q ss_pred             ccCCCeeEeeecCCCCccCccC--CeEEEEEeecCC--CcchHHHHHHHHHHHHhc-CCCCccceeeeeecC----Ccce
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQ--ERPVSVMKFDES--KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLET----QIPI  108 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~--~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~----~~~~  108 (292)
                      +|+||.||++....       +  ++.||+|.+...  .....+.+.+|+.+++++ .||||+++++.+...    ...+
T Consensus        10 ~G~~g~vy~~~~~~-------~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~   82 (332)
T cd07857          10 QGAYGIVCSARNAE-------TSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELY   82 (332)
T ss_pred             ccCCeEEEEEEeCC-------CCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEE
Confidence            79999999999864       5  789999998643  223346688999999999 599999999875432    3467


Q ss_pred             EEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccc
Q 044211          109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSF  188 (292)
Q Consensus       109 lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~  188 (292)
                      +++||+. ++|.+.+.       ....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||+
T Consensus        83 ~~~e~~~-~~L~~~l~-------~~~~~~~~~~~~~~~qi~~aL~~LH---~~givH~dlkp~Nili~~~~~~kl~Dfg~  151 (332)
T cd07857          83 LYEELME-ADLHQIIR-------SGQPLTDAHFQSFIYQILCGLKYIH---SANVLHRDLKPGNLLVNADCELKICDFGL  151 (332)
T ss_pred             EEEeccc-CCHHHHHh-------cCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHeEEcCCCCEEeCcCCC
Confidence            8888887 59999882       4567899999999999999999999   89999999999999999999999999999


Q ss_pred             ccccCCCCccc---hhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccch--------------
Q 044211          189 SISIPEGETHI---SELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRL--------------  236 (292)
Q Consensus       189 a~~~~~~~~~~---~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~--------------  236 (292)
                      +..+.......   .....|+..|++|+....       +     |++  +++ |.. ++......              
T Consensus       152 a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~  230 (332)
T cd07857         152 ARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKP-VFKGKDYVDQLNQILQVLGTPD  230 (332)
T ss_pred             ceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCc-CCCCCCHHHHHHHHHHHhCCCC
Confidence            98765332211   123467888988885421       1     888  777 543 32211100              


Q ss_pred             hhhc----ccc------cccCCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          237 NEII----DPL------IMGDRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       237 ~~~~----~~~------~~~~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ...+    .+.      .....+...    ....+..+.+++.+||+.||.+|| +.+++..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~  292 (332)
T cd07857         231 EETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEH  292 (332)
T ss_pred             HHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence            0000    000      000000000    012356799999999999999999 9998753

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.95  E-value=7e-28  Score=210.30  Aligned_cols=221  Identities=17%  Similarity=0.185  Sum_probs=163.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCc------ceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQI------PIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~------~~l  109 (292)
                      +|+||.||+|.+..       +++.||+|.+...  .......+.+|+.+++++.|+||+++++++.....      .++
T Consensus        25 ~g~~g~vy~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~l   97 (343)
T cd07851          25 SGAYGQVCSAFDTK-------TGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYL   97 (343)
T ss_pred             cCCceEEEEEEECC-------CCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccEEE
Confidence            89999999999975       7899999998653  23344667889999999999999999998876554      789


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      |+||+. ++|.+++.        ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.++|+|||++
T Consensus        98 v~e~~~-~~L~~~~~--------~~~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nill~~~~~~kL~dfg~~  165 (343)
T cd07851          98 VTHLMG-ADLNNIVK--------CQKLSDDHIQFLVYQILRGLKYIH---SAGIIHRDLKPSNIAVNEDCELKILDFGLA  165 (343)
T ss_pred             EEecCC-CCHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEcccccc
Confidence            999995 69999982        356899999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchh---hhccc---------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLN---EIIDP---------  242 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~---~~~~~---------  242 (292)
                      .......    ....++..|.+|+...       ++     |++  +++ |+. ++.......   .+.+.         
T Consensus       166 ~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~-pf~~~~~~~~~~~i~~~~~~~~~~~~  240 (343)
T cd07851         166 RHTDDEM----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKT-LFPGSDHIDQLKRIMNLVGTPDEELL  240 (343)
T ss_pred             ccccccc----cCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHhcCCCCHHHH
Confidence            8764331    2234667787776532       22     888  777 653 332211110   00000         


Q ss_pred             --------------ccccCCCCCC--chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 --------------LIMGDRSCSG--NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 --------------~~~~~~~~~~--~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                                    ......+...  ....+..+.+++.+||+.||++|| +.+|+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         241 QKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             hhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence                          0000000000  012356899999999999999999 999875

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.95  E-value=2.7e-27  Score=203.56  Aligned_cols=227  Identities=16%  Similarity=0.158  Sum_probs=161.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCC--------cc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ--------IP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~--------~~  107 (292)
                      .|+||.||+|.+..       +++.||+|.+....  ......+.+|+.+++.++|+||+++++++....        ..
T Consensus        18 ~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~   90 (311)
T cd07866          18 EGTFGEVYKARQIK-------TGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSV   90 (311)
T ss_pred             cCCCEEEEEEEECC-------CCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccccccCceE
Confidence            89999999999875       78999999985432  222345778999999999999999999876533        35


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++|+||+.+ +|...+.      .....+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||
T Consensus        91 ~lv~~~~~~-~l~~~~~------~~~~~~~~~~~~~i~~~l~~al~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg  160 (311)
T cd07866          91 YMVTPYMDH-DLSGLLE------NPSVKLTESQIKCYMLQLLEGINYLH---ENHILHRDIKAANILIDNQGILKIADFG  160 (311)
T ss_pred             EEEEecCCc-CHHHHHh------ccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECcCc
Confidence            899999985 7877772      23457999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCccc----------hhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchh---hh
Q 044211          188 FSISIPEGETHI----------SELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLN---EI  239 (292)
Q Consensus       188 ~a~~~~~~~~~~----------~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~---~~  239 (292)
                      ++..........          .....++..|.+|+...       ++     |++  +|+ |+. ++.......   .+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~-~~~~~~~~~~~~~~  239 (311)
T cd07866         161 LARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRP-ILQGKSDIDQLHLI  239 (311)
T ss_pred             cchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCC-CCCCCCHHHHHHHH
Confidence            997654322111          12234567787777432       22     888  888 643 221111000   00


Q ss_pred             cc----------------c-----ccccCCCCCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          240 ID----------------P-----LIMGDRSCSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       240 ~~----------------~-----~~~~~~~~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.                +     ......+...   .....+.+.+++.+||+.||.+|| +.+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         240 FKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             HHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            00                0     0000000000   012235788999999999999999 999875

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.95  E-value=4.1e-28  Score=197.16  Aligned_cols=178  Identities=20%  Similarity=0.243  Sum_probs=143.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeec-CCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLE-TQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~~  114 (292)
                      +|.||.||+|.....-   -...+.+|||.++..+  ........+|+.+++.++||||+.+..++.. +...|+++||.
T Consensus        34 ~GTYG~VykA~~~~~n---~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fdYA  110 (438)
T KOG0666|consen   34 RGTYGKVYKAVRKNTN---DKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKVWLLFDYA  110 (438)
T ss_pred             ccccceeeEeeeccCC---cccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEEEEehhh
Confidence            8999999999654200   0013479999997652  2334567899999999999999999999987 77899999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC----CceEEeeccccc
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE----NVAKLFDFSFSI  190 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~----~~~kl~Dfg~a~  190 (292)
                      +. +|-+.|+.|+..  ....++...+..|+.||+.|+.|||   ++=|+||||||.|||+..+    |.+||+|+|+++
T Consensus       111 Eh-DL~~II~fHr~~--~~~~lp~~mvKsilwQil~Gv~YLH---~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR  184 (438)
T KOG0666|consen  111 EH-DLWHIIKFHRAS--KAKQLPRSMVKSILWQILDGVHYLH---SNWVLHRDLKPANILVMGDGPERGRVKIADLGLAR  184 (438)
T ss_pred             hh-hHHHHHHHhccc--hhccCCHHHHHHHHHHHHhhhHHHh---hhheeeccCCcceEEEeccCCccCeeEeecccHHH
Confidence            97 999999866643  3368999999999999999999999   8899999999999999877    999999999999


Q ss_pred             ccCCCCccc--hhhhhcccccccccccCCC------------CeE--EEc
Q 044211          191 SIPEGETHI--SELLSGLRAFDLARLNEDD------------GYV--VLL  224 (292)
Q Consensus       191 ~~~~~~~~~--~~~~~g~~~y~~~~~~~~~------------Gvi--el~  224 (292)
                      .+.+.-...  ....+-|.+|.+||..-.+            |||  ||+
T Consensus       185 ~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElL  234 (438)
T KOG0666|consen  185 LFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELL  234 (438)
T ss_pred             HhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHH
Confidence            887654332  3445668888777665433            888  777

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=2.6e-28  Score=226.24  Aligned_cols=218  Identities=16%  Similarity=0.151  Sum_probs=178.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC---CCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE---SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~---~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.|..++++.       +++.||+|++++   .+......|..|-++|..-+.+-|++++-.|.+...+|+||||+
T Consensus        85 rGaFGEV~lVr~k~-------t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYlVMdY~  157 (1317)
T KOG0612|consen   85 RGAFGEVALVRHKS-------TEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYLYLVMDYM  157 (1317)
T ss_pred             ccccceeEEEEeec-------cccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccceEEEEecc
Confidence            99999999999987       999999999976   44445567899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +||+|-.++.       ....+++.++..|+..++.||.-||   +.|+|||||||.|||++..|.+||+|||.+..+..
T Consensus       158 pGGDlltLlS-------k~~~~pE~~ArFY~aEiVlAldslH---~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~  227 (1317)
T KOG0612|consen  158 PGGDLLTLLS-------KFDRLPEDWARFYTAEIVLALDSLH---SMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDA  227 (1317)
T ss_pred             cCchHHHHHh-------hcCCChHHHHHHHHHHHHHHHHHHH---hccceeccCCcceeEecccCcEeeccchhHHhcCC
Confidence            9999999992       3337999999999999999999999   99999999999999999999999999999999988


Q ss_pred             CCccchhhhhcccccccccccCCC----------------CeE--EEc-cchhhhhhcc---chhhhcccccccCCCCCC
Q 044211          195 GETHISELLSGLRAFDLARLNEDD----------------GYV--VLL-DHIKKYFEED---RLNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~----------------Gvi--el~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  252 (292)
                      ++.-.+...+|||-|.+|++....                ||+  ||+ |.. ||+.+.   .+..++...  ....+|+
T Consensus       228 dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~T-PFYadslveTY~KIm~hk--~~l~FP~  304 (1317)
T KOG0612|consen  228 DGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGET-PFYADSLVETYGKIMNHK--ESLSFPD  304 (1317)
T ss_pred             CCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCC-cchHHHHHHHHHHHhchh--hhcCCCc
Confidence            888788889999999666554322                888  999 654 555433   233333331  1223332


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                      ..+.+....+||.+.+- +|+.|-
T Consensus       305 ~~~VSeeakdLI~~ll~-~~e~RL  327 (1317)
T KOG0612|consen  305 ETDVSEEAKDLIEALLC-DREVRL  327 (1317)
T ss_pred             ccccCHHHHHHHHHHhc-Chhhhc
Confidence            24678889999998776 566664

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.95  E-value=6.6e-27  Score=202.90  Aligned_cols=221  Identities=16%  Similarity=0.146  Sum_probs=162.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeec-CCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE-TQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~~  114 (292)
                      .|+||.||++....       +++.||+|.+...  .....+.+.+|+.+++.++||||+++++++.. ....++++||+
T Consensus        20 ~g~~g~v~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~lv~e~~   92 (328)
T cd07856          20 MGAFGLVCSARDQL-------TGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYFVTELL   92 (328)
T ss_pred             ccCCeEEEEEEECC-------CCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEEEeehh
Confidence            89999999998765       8999999987542  22344678899999999999999999999875 45688999998


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      . ++|..+++        ...+++..+..++.|++.||.|||   ..+++|+||+|+||++++++.++|+|||.+.....
T Consensus        93 ~-~~L~~~~~--------~~~~~~~~~~~~~~ql~~aL~~LH---~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~  160 (328)
T cd07856          93 G-TDLHRLLT--------SRPLEKQFIQYFLYQILRGLKYVH---SAGVVHRDLKPSNILINENCDLKICDFGLARIQDP  160 (328)
T ss_pred             c-cCHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEeECCCCCEEeCccccccccCC
Confidence            5 69988882        345788888899999999999999   89999999999999999999999999999875532


Q ss_pred             CCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccch-----------------------
Q 044211          195 GETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRL-----------------------  236 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~-----------------------  236 (292)
                      ..    ....++..|.+|+....       +     |++  +|+ |+. ++......                       
T Consensus       161 ~~----~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (328)
T cd07856         161 QM----TGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKP-LFPGKDHVNQFSIITDLLGTPPDDVINTICS  235 (328)
T ss_pred             Cc----CCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhCCCCHHHHHhccc
Confidence            21    22345667777765321       2     887  788 643 22211110                       


Q ss_pred             ---hhhcccccccCCCCCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          237 ---NEIIDPLIMGDRSCSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       237 ---~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                         ...+.. +....+.+.   .+..+..+.++|.+||+.+|++|| +.+++..
T Consensus       236 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         236 ENTLRFVQS-LPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             hhhHHHHhh-ccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence               000000 000000000   012456899999999999999999 9998765

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.94  E-value=1.9e-27  Score=192.32  Aligned_cols=224  Identities=17%  Similarity=0.207  Sum_probs=172.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecC----CcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLET----QIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~----~~~~lv~e  112 (292)
                      -|-.|.|-.+..+.       +++.+|+|++...     .+..+|+++--.. .|||||+++++|.+.    ..+.+|||
T Consensus        72 ~GinGkV~~C~~k~-------T~ekfALKvL~Ds-----~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE  139 (400)
T KOG0604|consen   72 AGINGKVVQCVHKR-------TQEKFALKVLLDS-----PKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVME  139 (400)
T ss_pred             cccCCceEEEEecc-------chhhhHHHHHhcC-----HHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeee
Confidence            78899999999987       9999999998655     3355788866555 699999999999763    35789999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC---CCceEEeecccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE---ENVAKLFDFSFS  189 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~---~~~~kl~Dfg~a  189 (292)
                      .++||.|...+..+     ....+++.++..|+.||+.|+.|||   ..+|.||||||+|+|.+.   |-.+||+|||+|
T Consensus       140 ~meGGeLfsriq~~-----g~~afTErea~eI~~qI~~Av~~lH---~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFA  211 (400)
T KOG0604|consen  140 CMEGGELFSRIQDR-----GDQAFTEREASEIMKQIGLAVRYLH---SMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFA  211 (400)
T ss_pred             cccchHHHHHHHHc-----ccccchHHHHHHHHHHHHHHHHHHH---hcchhhccCChhheeeecCCCCcceEecccccc
Confidence            99999999999544     3567999999999999999999999   999999999999999974   457999999999


Q ss_pred             cccCCCCccchhhhhccccccccccc-----CCC------CeE-EEc-cchhhhhhccch--hhhcc-cccccCCCCC--
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLN-----EDD------GYV-VLL-DHIKKYFEEDRL--NEIID-PLIMGDRSCS--  251 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~-----~~~------Gvi-el~-~~~~~~~~~~~~--~~~~~-~~~~~~~~~~--  251 (292)
                      +.-..+..  ..+.+-|+.|.+|++.     +++      ||+ .++ ...+||+.+...  ..-+. ....+.+.++  
T Consensus       212 K~t~~~~~--L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~p  289 (400)
T KOG0604|consen  212 KETQEPGD--LMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEP  289 (400)
T ss_pred             cccCCCcc--ccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCCh
Confidence            87653222  2345567777555443     344      999 555 666677766542  11122 2234554443  


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .++..+....++|+..|..+|.+|- +.+++..
T Consensus       290 EWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~h  322 (400)
T KOG0604|consen  290 EWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDH  322 (400)
T ss_pred             hHhHHHHHHHHHHHHHhcCCchhheeHHHhhcC
Confidence            3456688899999999999999999 9998764

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.94  E-value=5.2e-27  Score=204.96  Aligned_cols=222  Identities=15%  Similarity=0.144  Sum_probs=160.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecC------CcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET------QIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~------~~~~l  109 (292)
                      +|+||.||+|....       +++.||+|.++..  .......+.+|+.++++++|+||+++++++...      ...++
T Consensus        27 ~G~~g~v~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~l   99 (345)
T cd07877          27 SGAYGSVCAAFDTK-------TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYL   99 (345)
T ss_pred             ecCCeEEEEEEEcC-------CCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccccccEEE
Confidence            89999999998765       8899999998753  222345688999999999999999999988643      23567


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      +++++ +++|.++++        ...+++..+..++.|++.||.|||   +.+++|+||+|+||++++++.+||+|||++
T Consensus       100 v~~~~-~~~L~~~~~--------~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~dfg~~  167 (345)
T cd07877         100 VTHLM-GADLNNIVK--------CQKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLA  167 (345)
T ss_pred             Eehhc-ccCHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEcCCCCEEEeccccc
Confidence            77776 579988882        345899999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchh---hhccc------cc-
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLN---EIIDP------LI-  244 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~---~~~~~------~~-  244 (292)
                      .......    ....++..|++|+...       ++     |++  +|+ |+. ++.......   .....      .+ 
T Consensus       168 ~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~  242 (345)
T cd07877         168 RHTDDEM----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT-LFPGTDHIDQLKLILRLVGTPGAELL  242 (345)
T ss_pred             ccccccc----cccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence            7653321    2245677787777532       22     888  888 654 222111100   00000      00 


Q ss_pred             ------------c--cCCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          245 ------------M--GDRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       245 ------------~--~~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                  .  ...+...    ....++.+.+++.+||+.||.+|| +.+++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  300 (345)
T cd07877         243 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  300 (345)
T ss_pred             hhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcC
Confidence                        0  0000000    002355789999999999999999 9998764

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.94  E-value=1.6e-27  Score=199.05  Aligned_cols=246  Identities=15%  Similarity=0.179  Sum_probs=188.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecC-CcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET-QIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-~~~~lv~e~~~  115 (292)
                      +|.||.||.|.|+.  ..+.-+.+.|.+|+++.. ++-+...++.|...+..+.|||+.++.+++... ..++.++.+..
T Consensus       294 EGtFGri~~gI~~e--Edt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~~P~V~y~~~~  371 (563)
T KOG1024|consen  294 EGTFGRIYRGIWRE--EDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYATPFVLYPATG  371 (563)
T ss_pred             cCchhheeeeeecc--cCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEeeccCcceEEEeccC
Confidence            89999999998752  222334567889998764 555667899999999999999999999998764 45788899999


Q ss_pred             CCChhHHhhhhC-CCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          116 CGSLADRIRIHH-TPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       116 ~gsL~~~l~~~~-~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .|+|+.|+..++ ........++..+...++.|++.|+.|||   +++++|.||..+|.+|++...+||+|=.+++.+.+
T Consensus       372 ~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh---~~~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP  448 (563)
T KOG1024|consen  372 VGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLH---NHGVIHKDIAARNCVIDDQLQVKLTDSALSRDLFP  448 (563)
T ss_pred             cchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHH---hcCcccchhhhhcceehhheeEEeccchhccccCc
Confidence            999999996543 23344567788889999999999999999   99999999999999999999999999999998887


Q ss_pred             CCccchhhhh-ccccccccc------ccCCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          195 GETHISELLS-GLRAFDLAR------LNEDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       195 ~~~~~~~~~~-g~~~y~~~~------~~~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .+++...... ....|++.|      |+..+     ||+  ||+ -...|+.+-+. .+. ..-+...+...+|.+||++
T Consensus       449 ~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDP-fEm-~~ylkdGyRlaQP~NCPDe  526 (563)
T KOG1024|consen  449 GDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDP-FEM-EHYLKDGYRLAQPFNCPDE  526 (563)
T ss_pred             ccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCH-HHH-HHHHhccceecCCCCCcHH
Confidence            7776543322 244555443      44444     998  888 33334433322 111 1223334444444689999


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      |..+|.-||..+|++|| +++++..|.++...
T Consensus       527 Lf~vMacCWallpeeRPsf~Qlv~cLseF~~q  558 (563)
T KOG1024|consen  527 LFTVMACCWALLPEERPSFSQLVICLSEFHTQ  558 (563)
T ss_pred             HHHHHHHHHhcCcccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999 99999999998643

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=3.5e-26  Score=193.96  Aligned_cols=228  Identities=19%  Similarity=0.206  Sum_probs=171.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-------chHHHHHHHHHHHHhcCCCCccceeeeee-cCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-------RTYDCCINNIVYASQMIHRCIFKLIGCCL-ETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~e~~~l~~l~h~niv~~~~~~~-~~~~~~l  109 (292)
                      +|||+.||+|.+..       ..+.||+|+-...+.       ...+...+|.++-+.|.||-||++|+++. +.+.++-
T Consensus       473 rGGFSEVyKAFDl~-------EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCT  545 (775)
T KOG1151|consen  473 RGGFSEVYKAFDLT-------EQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCT  545 (775)
T ss_pred             cccHHHHHHhcccc-------hhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecccccee
Confidence            99999999999864       677889998533211       12245678999999999999999999997 4567889


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC---CCceEEeec
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE---ENVAKLFDF  186 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~---~~~~kl~Df  186 (292)
                      |+|||+|-+|.-+++       ....+++..+..|+.||+.||.||..- ..+|+|-||||.|||+-.   -|.+||.||
T Consensus       546 VLEYceGNDLDFYLK-------QhklmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDF  617 (775)
T KOG1151|consen  546 VLEYCEGNDLDFYLK-------QHKLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDF  617 (775)
T ss_pred             eeeecCCCchhHHHH-------hhhhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeec
Confidence            999999999999995       456799999999999999999999855 679999999999999964   377999999


Q ss_pred             ccccccCCCCcc------chhhhhccccccccccc----------CCC-----CeE--EEc-cchhhhhhccchhhhccc
Q 044211          187 SFSISIPEGETH------ISELLSGLRAFDLARLN----------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDP  242 (292)
Q Consensus       187 g~a~~~~~~~~~------~~~~~~g~~~y~~~~~~----------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~  242 (292)
                      |+++++..+.+.      ..+...||.+|.+|+..          .|.     |||  .-+ |+. ||-.+..-..+++.
T Consensus       618 GLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrK-PFGhnqsQQdILqe  696 (775)
T KOG1151|consen  618 GLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRK-PFGHNQSQQDILQE  696 (775)
T ss_pred             chhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCC-CCCCchhHHHHHhh
Confidence            999999765443      24567799999665543          333     888  333 655 44333333333332


Q ss_pred             --ccc-cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHH
Q 044211          243 --LIM-GDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVA  281 (292)
Q Consensus       243 --~~~-~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~  281 (292)
                        .+. -...+|..+....+...+|.+||++.-++|. ..++.
T Consensus       697 NTIlkAtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA  739 (775)
T KOG1151|consen  697 NTILKATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLA  739 (775)
T ss_pred             hchhcceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHc
Confidence              111 1122233346677899999999999999998 77764

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.93  E-value=3.7e-26  Score=206.39  Aligned_cols=217  Identities=23%  Similarity=0.292  Sum_probs=162.9

Q ss_pred             CeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccCCCChh
Q 044211           42 YKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINCGSLA  120 (292)
Q Consensus        42 g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~  120 (292)
                      +.||+|.+         .++.||||.+-...   .+...+|+..|+.- .|||||++++.=.+....|+..|.|.. ||.
T Consensus       524 t~Vf~G~y---------e~R~VAVKrll~e~---~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~-sL~  590 (903)
T KOG1027|consen  524 TVVFRGVY---------EGREVAVKRLLEEF---FDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCAC-SLQ  590 (903)
T ss_pred             cEEEEEee---------CCceehHHHHhhHh---HHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhh-hHH
Confidence            46999999         89999999976542   34467899999988 699999999888788889999999995 999


Q ss_pred             HHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC---C--CceEEeecccccccCCC
Q 044211          121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE---E--NVAKLFDFSFSISIPEG  195 (292)
Q Consensus       121 ~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~---~--~~~kl~Dfg~a~~~~~~  195 (292)
                      ++++..+.   .......-..+....|+++||++||   ..+|+||||||.||||+.   +  .+++|+|||+++.+..+
T Consensus       591 dlie~~~~---d~~~~~~i~~~~~l~q~~~GlaHLH---sl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~  664 (903)
T KOG1027|consen  591 DLIESSGL---DVEMQSDIDPISVLSQIASGLAHLH---SLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGG  664 (903)
T ss_pred             HHHhcccc---chhhcccccHHHHHHHHHHHHHHHH---hcccccccCCCceEEEEccCCCcceeEEecccccccccCCC
Confidence            99954311   1111111345677899999999999   899999999999999986   2  46999999999998765


Q ss_pred             Cccc--hhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCC---CchHH
Q 044211          196 ETHI--SELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS---GNQQQ  256 (292)
Q Consensus       196 ~~~~--~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  256 (292)
                      ....  .....||.+|.+||.....           ||+  ..+ |...||-.....+..+   +.+.+...   +..++
T Consensus       665 ~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NI---l~~~~~L~~L~~~~d~  741 (903)
T KOG1027|consen  665 KSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANI---LTGNYTLVHLEPLPDC  741 (903)
T ss_pred             cchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhh---hcCccceeeeccCchH
Confidence            5433  3456789999888877654           999  555 6666665544332222   12222111   11233


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                        ...+||.++++.+|..|| +.+|+.
T Consensus       742 --eA~dLI~~ml~~dP~~RPsa~~VL~  766 (903)
T KOG1027|consen  742 --EAKDLISRMLNPDPQLRPSATDVLN  766 (903)
T ss_pred             --HHHHHHHHhcCCCcccCCCHHHHhC
Confidence              788999999999999999 999874

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.93  E-value=5.4e-25  Score=198.08  Aligned_cols=243  Identities=12%  Similarity=0.052  Sum_probs=155.3

Q ss_pred             ccCCCeeEeeecCCCCc---------cCccCCeEEEEEeecCCCcchHHHH--------------HHHHHHHHhcCCCCc
Q 044211           38 IKNGYKLYEGFFQNRPI---------SGFFQERPVSVMKFDESKPRTYDCC--------------INNIVYASQMIHRCI   94 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~---------~~~~~~~~vaiK~~~~~~~~~~~~~--------------~~e~~~l~~l~h~ni   94 (292)
                      +|+||+||+|.+.....         .....++.||||.++.......++|              ..|+..+.+++|.++
T Consensus       155 ~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~~l~~l~~~~l  234 (507)
T PLN03224        155 GGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAYMCAKIKRNPI  234 (507)
T ss_pred             cCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHHHHHHhhcccc
Confidence            89999999997521000         0112456899999876533323333              346667777766554


Q ss_pred             -----cceeeeeec--------CCcceEEEeccCCCChhHHhhhhCCCC-----------------CCCCCCCHHHHHHH
Q 044211           95 -----FKLIGCCLE--------TQIPILVFEYINCGSLADRIRIHHTPQ-----------------PQHEPLLLTHRLKI  144 (292)
Q Consensus        95 -----v~~~~~~~~--------~~~~~lv~e~~~~gsL~~~l~~~~~~~-----------------~~~~~l~~~~~~~i  144 (292)
                           ++++++|..        .+..++|+||+.+|+|.+++.......                 .....+++..+..+
T Consensus       235 ~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i  314 (507)
T PLN03224        235 AAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGV  314 (507)
T ss_pred             hhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHH
Confidence                 667777653        356799999999999999984321100                 01223567788899


Q ss_pred             HHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCccchhhhhcccccccccccC--------
Q 044211          145 AMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNE--------  216 (292)
Q Consensus       145 ~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~--------  216 (292)
                      +.|++.||.|||   ..+++||||||+|||++.++.+||+|||++...............+++.|.+||...        
T Consensus       315 ~~ql~~aL~~lH---~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~~~~~  391 (507)
T PLN03224        315 MRQVLTGLRKLH---RIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRA  391 (507)
T ss_pred             HHHHHHHHHHHH---HCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCCCCCcc
Confidence            999999999999   889999999999999999999999999999765432221112223366776666431        


Q ss_pred             ------------------------CC-CeE--EEc-cchhhhhhcc----------chhhhcccccccCCCCCCchHHHH
Q 044211          217 ------------------------DD-GYV--VLL-DHIKKYFEED----------RLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       217 ------------------------~~-Gvi--el~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                                              .+ ||+  +|+ +...++....          .....+.............+...+
T Consensus       392 ~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~~~~d~~s~  471 (507)
T PLN03224        392 PAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDFSLLDRNKE  471 (507)
T ss_pred             chhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCcccccccCh
Confidence                                    11 777  666 4332221100          000111111111222222235567


Q ss_pred             HHHHHHhHhcCCCC---CCCC-HHHHHHH
Q 044211          259 AFAHLIFECVNESP---VDRP-MVDVAKK  283 (292)
Q Consensus       259 ~l~~li~~Cl~~dP---~~RP-~~el~~~  283 (292)
                      ..++|+.+++..+|   .+|+ +.|++++
T Consensus       472 ~~~dLi~~LL~~~~~~~~~RlSa~eaL~H  500 (507)
T PLN03224        472 AGWDLACKLITKRDQANRGRLSVGQALSH  500 (507)
T ss_pred             HHHHHHHHHhccCCCCcccCCCHHHHhCC
Confidence            89999999999876   6899 9998863

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=7e-27  Score=200.86  Aligned_cols=229  Identities=15%  Similarity=0.191  Sum_probs=181.2

Q ss_pred             HHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecC---CCcchHHHHHHHHHHHHhcCCCCccceeeeeec
Q 044211           28 AEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE---SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE  103 (292)
Q Consensus        28 ~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~---~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~  103 (292)
                      +.+++.+... -||||.|=.+....       +...+|+|++++   .+..+.+.+..|-.+|...+.|.||++|..|.+
T Consensus       419 l~dl~~iaTLGvGgFGRVELV~~~~-------~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd  491 (732)
T KOG0614|consen  419 LSDLKRIATLGVGGFGRVELVKVNS-------QKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRD  491 (732)
T ss_pred             hhhhhhhhhcccCccceEEEEEecc-------cchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhcc
Confidence            3444444333 89999999999852       333489999865   355566778999999999999999999999999


Q ss_pred             CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEE
Q 044211          104 TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKL  183 (292)
Q Consensus       104 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl  183 (292)
                      +...||+||-|-||.|-..+       ..++.++......++..++.|+.|||   .++|+.|||||+|.+++.+|.+||
T Consensus       492 ~kyvYmLmEaClGGElWTiL-------rdRg~Fdd~tarF~~acv~EAfeYLH---~k~iIYRDLKPENllLd~~Gy~KL  561 (732)
T KOG0614|consen  492 SKYVYMLMEACLGGELWTIL-------RDRGSFDDYTARFYVACVLEAFEYLH---RKGIIYRDLKPENLLLDNRGYLKL  561 (732)
T ss_pred             chhhhhhHHhhcCchhhhhh-------hhcCCcccchhhhhHHHHHHHHHHHH---hcCceeccCChhheeeccCCceEE
Confidence            99999999999999999888       46778999999999999999999999   999999999999999999999999


Q ss_pred             eecccccccCCCCccchhhhhcccccccccccC-CC----------CeE--EEccchhhhhhccchhhhcccccccCCCC
Q 044211          184 FDFSFSISIPEGETHISELLSGLRAFDLARLNE-DD----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       184 ~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~-~~----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      .|||+|+.+..+..  .++++||+.|.+|++.- |.          |++  ||+...+||....++. .+...+.+---+
T Consensus       562 VDFGFAKki~~g~K--TwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmk-tYn~ILkGid~i  638 (732)
T KOG0614|consen  562 VDFGFAKKIGSGRK--TWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMK-TYNLILKGIDKI  638 (732)
T ss_pred             eehhhHHHhccCCc--eeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHH-HHHHHHhhhhhh
Confidence            99999999976554  57799999998877653 33          888  8983344554443332 223333333222


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                      ..|........+||.+....+|.+|-
T Consensus       639 ~~Pr~I~k~a~~Lik~LCr~~P~ERL  664 (732)
T KOG0614|consen  639 EFPRRITKTATDLIKKLCRDNPTERL  664 (732)
T ss_pred             hcccccchhHHHHHHHHHhcCcHhhh
Confidence            22235666788999999999999986

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.92  E-value=5.3e-25  Score=202.41  Aligned_cols=162  Identities=19%  Similarity=0.155  Sum_probs=110.7

Q ss_pred             ccCCCeeEeeecCCCCccCccC----CeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeee------eecCCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQ----ERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGC------CLETQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~----~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~------~~~~~~~  107 (292)
                      +|+||.||+|.+..       +    +..||+|.+......  +...++  .++...+.++..+...      .......
T Consensus       142 ~G~FG~VYka~~~~-------~~~~~~~~vAvK~~~~~~~~--e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (566)
T PLN03225        142 EGAFGVVYKASLVN-------KQSKKEGKYVLKKATEYGAV--EIWMNE--RVRRACPNSCADFVYGFLEPVSSKKEDEY  210 (566)
T ss_pred             eCCCeEEEEEEEcC-------CccccCcEEEEEEecccchh--HHHHHH--HHHhhchhhHHHHHHhhhcccccccCCce
Confidence            89999999999864       5    789999998654221  111111  1222222232222221      2345678


Q ss_pred             eEEEeccCCCChhHHhhhhCCCC-------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceE
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQ-------------PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNIL  174 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~-------------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nil  174 (292)
                      ++|+||+.+++|.+++.......             ..........+..++.|++.||.|||   ..+|+||||||+|||
T Consensus       211 ~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH---~~gIiHRDLKP~NIL  287 (566)
T PLN03225        211 WLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLH---STGIVHRDVKPQNII  287 (566)
T ss_pred             EEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHH---HCCEEeCcCCHHHEE
Confidence            99999999999999984321000             00111223456689999999999999   899999999999999


Q ss_pred             ecC-CCceEEeecccccccCCCCccchhhhhccccccccc
Q 044211          175 FNE-ENVAKLFDFSFSISIPEGETHISELLSGLRAFDLAR  213 (292)
Q Consensus       175 i~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~  213 (292)
                      ++. ++.+||+|||+|..+............+++.|++||
T Consensus       288 l~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE  327 (566)
T PLN03225        288 FSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPE  327 (566)
T ss_pred             EeCCCCcEEEEeCCCccccccccccCCcccccCCCccChH
Confidence            995 689999999999876544434444567788888877

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.92  E-value=4.5e-24  Score=172.17  Aligned_cols=209  Identities=21%  Similarity=0.302  Sum_probs=157.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|++|.||++....       +++.+++|.+...... ....+.+|+..++.++|++|+++++++......++++|++.+
T Consensus         3 ~g~~~~v~~~~~~~-------~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~   75 (215)
T cd00180           3 EGGFGTVYLARDKK-------TGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEG   75 (215)
T ss_pred             cCCceEEEEEEecC-------CCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCC
Confidence            68999999999963       5899999999876432 346789999999999999999999999998899999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-CCceEEeecccccccCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-ENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~a~~~~~~  195 (292)
                      ++|.+++...      ...++...+..++.+++.++.+||   ..+++|+||+|.||+++. ++.++|+|||.+......
T Consensus        76 ~~l~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~lh---~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~  146 (215)
T cd00180          76 GSLKDLLKEN------EGKLSEDEILRILLQILEGLEYLH---SNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSD  146 (215)
T ss_pred             CcHHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCC
Confidence            9999999321      146889999999999999999999   889999999999999999 899999999999766443


Q ss_pred             CccchhhhhcccccccccccCCCCeEEEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCC
Q 044211          196 ETHISELLSGLRAFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDR  275 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~Gviel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~R  275 (292)
                      .. ......+...|.+++.....   ...+.....+.-+.+   +-              ....+.+++.+||+.||++|
T Consensus       147 ~~-~~~~~~~~~~~~~pe~~~~~---~~~~~~~D~~~lg~~---~~--------------~l~~~~~~l~~~l~~~p~~R  205 (215)
T cd00180         147 KS-LLKTIVGTPAYMAPEVLLGK---GYYSEKSDIWSLGVI---LY--------------ELPELKDLIRKMLQKDPEKR  205 (215)
T ss_pred             cc-hhhcccCCCCccChhHhccc---CCCCchhhhHHHHHH---HH--------------HHHHHHHHHHHHhhCCcccC
Confidence            21 11223345555555433210   000000000000000   00              00589999999999999999


Q ss_pred             C-HHHHHHH
Q 044211          276 P-MVDVAKK  283 (292)
Q Consensus       276 P-~~el~~~  283 (292)
                      | +.++++.
T Consensus       206 ~~~~~l~~~  214 (215)
T cd00180         206 PSAKEILEH  214 (215)
T ss_pred             cCHHHHhhC
Confidence            9 9999865

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.92  E-value=5.2e-26  Score=200.97  Aligned_cols=227  Identities=18%  Similarity=0.202  Sum_probs=180.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||++++..       +++..|+|.++........-+..|+-+++..+||||+.++|.+...+.+|+.||||.+|
T Consensus        25 sgTygdvyKaRd~~-------s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEycggg   97 (829)
T KOG0576|consen   25 SGTYGDVYKARDKR-------SGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEYCGGG   97 (829)
T ss_pred             CCcccchhhhcccc-------cCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEecCCC
Confidence            89999999999987       99999999999876667777889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+.-       ...+++++.++...+.+...|++|||   +.+-+|||||=.||++++.|.+|+.|||.+..+... .
T Consensus        98 slQdiy-------~~TgplselqiayvcRetl~gl~ylh---s~gk~hRdiKGanilltd~gDvklaDfgvsaqitat-i  166 (829)
T KOG0576|consen   98 SLQDIY-------HVTGPLSELQIAYVCRETLQGLKYLH---SQGKIHRDIKGANILLTDEGDVKLADFGVSAQITAT-I  166 (829)
T ss_pred             ccccee-------eecccchhHHHHHHHhhhhccchhhh---cCCcccccccccceeecccCceeecccCchhhhhhh-h
Confidence            998877       35678999999999999999999999   899999999999999999999999999999877542 2


Q ss_pred             cchhhhhcccccccccccCCC--------------CeE--EEccchhhhhhccchhhhcccccccCCCC--CCchHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD--------------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSC--SGNQQQLQA  259 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~--------------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  259 (292)
                      .....+.||+.|+++++..-.              |+.  |+---.+|.+.......++-....+-.|+  .+.....+.
T Consensus       167 ~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~  246 (829)
T KOG0576|consen  167 AKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEF  246 (829)
T ss_pred             hhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHhhccCCCCCcccCCccchHH
Confidence            234567899999888876422              433  33311234444333333322211111111  122456778


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+++..|+-++|.+|| +..++.
T Consensus       247 fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  247 FHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             HHHHHHHHhcCCCccCCChhhhee
Confidence            99999999999999999 877654

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=3.4e-26  Score=183.20  Aligned_cols=228  Identities=14%  Similarity=0.167  Sum_probs=163.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCC-----cceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ-----IPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-----~~~lv  110 (292)
                      -|+||+||.+.+..       +|+.||+|++...-  -...+++.+|+.+|+.++|.|++..+++.....     ++|.+
T Consensus        63 YGAFGVVWsVTDPR-------dgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~  135 (449)
T KOG0664|consen   63 YGAFGVVWSVTDPR-------SGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVL  135 (449)
T ss_pred             ccceeEEEeccCCC-------CccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHH
Confidence            79999999999876       99999999986542  234578999999999999999999988875433     46788


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +|.++. +|...|       -++..++...+.-+..||++||.|||   +.+|+||||||.|+|+++|..+||||||+++
T Consensus       136 TELmQS-DLHKII-------VSPQ~Ls~DHvKVFlYQILRGLKYLH---sA~ILHRDIKPGNLLVNSNCvLKICDFGLAR  204 (449)
T KOG0664|consen  136 TELMQS-DLHKII-------VSPQALTPDHVKVFVYQILRGLKYLH---TANILHRDIKPGNLLVNSNCILKICDFGLAR  204 (449)
T ss_pred             HHHHHh-hhhhee-------ccCCCCCcchhhhhHHHHHhhhHHHh---hcchhhccCCCccEEeccCceEEeccccccc
Confidence            999985 887777       57888999999999999999999999   8999999999999999999999999999999


Q ss_pred             ccCCCCccchhhhhcccccccccccCCC------------CeE--EEccchhhhhhccchhhh--------------cc-
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLLDHIKKYFEEDRLNEI--------------ID-  241 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~~~~~~~~~~~~~~~~--------------~~-  241 (292)
                      ..+.++...-..-+-|..|.+|++.-.+            |++  |++|++.-|-..+.+..+              +. 
T Consensus       205 vee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~  284 (449)
T KOG0664|consen  205 TWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKY  284 (449)
T ss_pred             ccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHH
Confidence            8765543322223334455444433222            888  888776222211111100              00 


Q ss_pred             -------cccccCCCCCC---------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 -------PLIMGDRSCSG---------NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 -------~~~~~~~~~~~---------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                             ..+.+....+.         +.....+-..+..+.+..||+.|. ..+.+..
T Consensus       285 ACEGAk~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~  343 (449)
T KOG0664|consen  285 ACEGAKNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQH  343 (449)
T ss_pred             HhhhhHHHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhccc
Confidence                   01111111111         123445566778889999999998 7666544

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=8.8e-26  Score=190.01  Aligned_cols=218  Identities=16%  Similarity=0.216  Sum_probs=172.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      .|+||.|..|..+.       +++.+|||+++++-   ....+.-+.|-++|.-. +-|.+++++.+|.+-+++|+||||
T Consensus       359 KGSFGKVlLaerkg-------tdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFVMEy  431 (683)
T KOG0696|consen  359 KGSFGKVLLAERKG-------TDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFVMEY  431 (683)
T ss_pred             cCccceeeeecccC-------cchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeEEEE
Confidence            99999999999876       88899999998642   22233445677777766 467889999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +.||+|--.|.       +-+.+.+..++.++.+||.||-|||   +++|+.||||..|||++.+|.+||+|||+++.-.
T Consensus       432 vnGGDLMyhiQ-------Q~GkFKEp~AvFYAaEiaigLFFLh---~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni  501 (683)
T KOG0696|consen  432 VNGGDLMYHIQ-------QVGKFKEPVAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  501 (683)
T ss_pred             ecCchhhhHHH-------HhcccCCchhhhhhHHHHHHhhhhh---cCCeeeeeccccceEeccCCceEeeecccccccc
Confidence            99999999993       4566888899999999999999999   9999999999999999999999999999997543


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      -+.. ....++||+.|++|++....           ||+  ||+...+|+ +.....++++.........|-  ..+.+.
T Consensus       502 ~~~~-TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPF-dGeDE~elF~aI~ehnvsyPK--slSkEA  577 (683)
T KOG0696|consen  502 FDGV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPF-DGEDEDELFQAIMEHNVSYPK--SLSKEA  577 (683)
T ss_pred             cCCc-ceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCC-CCCCHHHHHHHHHHccCcCcc--cccHHH
Confidence            3322 24568999999988876533           898  899334444 334445555555444444333  667788


Q ss_pred             HHHHhHhcCCCCCCCC
Q 044211          261 AHLIFECVNESPVDRP  276 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP  276 (292)
                      ..++...+.+.|.+|-
T Consensus       578 v~ickg~ltK~P~kRL  593 (683)
T KOG0696|consen  578 VAICKGLLTKHPGKRL  593 (683)
T ss_pred             HHHHHHHhhcCCcccc
Confidence            8899999999999996

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.91  E-value=5.7e-25  Score=194.18  Aligned_cols=214  Identities=18%  Similarity=0.169  Sum_probs=161.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+|+.|..+....       +++..++|++......    ..+|+.++... +||||+++++.+......|+|||++.+
T Consensus       332 ~gs~s~~~~~~~~~-------t~~~~~vkii~~~~~~----~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g  400 (612)
T KOG0603|consen  332 EGSFSAVKYCESSP-------TDQEPAVKIISKRADD----NQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDG  400 (612)
T ss_pred             CCCccceeeeeccc-------cccchhheeccccccc----cccccchhhhhcCCCcceeecceecCCceeeeeehhccc
Confidence            89999999999876       8999999999766221    23567555555 799999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe-cCCCceEEeecccccccCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF-NEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili-~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +-+.+.+.        ..+.....+..|+.+++.|+.|||   .++++||||||+|||+ ++.+.++|+|||.++.....
T Consensus       401 ~ell~ri~--------~~~~~~~e~~~w~~~lv~Av~~LH---~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~  469 (612)
T KOG0603|consen  401 GELLRRIR--------SKPEFCSEASQWAAELVSAVDYLH---EQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS  469 (612)
T ss_pred             cHHHHHHH--------hcchhHHHHHHHHHHHHHHHHHHH---hcCeeecCCChhheeecCCCCcEEEEEechhhhCchh
Confidence            88888773        122333677789999999999999   8999999999999999 58899999999999877654


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                          ....+-|..|.+|++....           |++  +|+ |.. ++-....-.++......+...    ...+...+
T Consensus       470 ----~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~t-p~~~~P~~~ei~~~i~~~~~s----~~vS~~AK  540 (612)
T KOG0603|consen  470 ----CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRT-LFAAHPAGIEIHTRIQMPKFS----ECVSDEAK  540 (612)
T ss_pred             ----hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCC-ccccCCchHHHHHhhcCCccc----cccCHHHH
Confidence                1222345566666655433           988  888 655 222211112333333333222    25677899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +|+.+||+.||.+|| +.++..
T Consensus       541 dLl~~LL~~dP~~Rl~~~~i~~  562 (612)
T KOG0603|consen  541 DLLQQLLQVDPALRLGADEIGA  562 (612)
T ss_pred             HHHHHhccCChhhCcChhhhcc
Confidence            999999999999999 999865

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=6.4e-25  Score=193.30  Aligned_cols=173  Identities=14%  Similarity=0.147  Sum_probs=144.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      -|+||.|.++.-.-       +...||+|.+.+.+   ..+.-....|-++|...+.+-||++|-.|.+++.+|+||+|+
T Consensus       639 vGAFGeV~Lv~KvD-------T~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdYI  711 (1034)
T KOG0608|consen  639 VGAFGEVCLVRKVD-------TRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYI  711 (1034)
T ss_pred             ccccceeEEEeecc-------hhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEecc
Confidence            89999999997532       67789999986542   233445778999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC-
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP-  193 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~-  193 (292)
                      +||++-.++-       .-+.+++..+..++.++.+|+.+.|   ..|+|||||||.|||||.+|.+||.|||++.-+. 
T Consensus       712 PGGDmMSLLI-------rmgIFeE~LARFYIAEltcAiesVH---kmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRW  781 (1034)
T KOG0608|consen  712 PGGDMMSLLI-------RMGIFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRW  781 (1034)
T ss_pred             CCccHHHHHH-------HhccCHHHHHHHHHHHHHHHHHHHH---hccceecccCccceEEccCCceeeeecccccccee
Confidence            9999999994       3456888888999999999999999   9999999999999999999999999999985431 


Q ss_pred             --CC-----Ccc---------------------------------chhhhhcccccccccccCCC-----------CeE-
Q 044211          194 --EG-----ETH---------------------------------ISELLSGLRAFDLARLNEDD-----------GYV-  221 (292)
Q Consensus       194 --~~-----~~~---------------------------------~~~~~~g~~~y~~~~~~~~~-----------Gvi-  221 (292)
                        +.     ..+                                 .....+||+.|+++++..++           ||| 
T Consensus       782 THdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil  861 (1034)
T KOG0608|consen  782 THDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVIL  861 (1034)
T ss_pred             ccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHH
Confidence              00     000                                 11457799999999988877           888 


Q ss_pred             -EEc-cch
Q 044211          222 -VLL-DHI  227 (292)
Q Consensus       222 -el~-~~~  227 (292)
                       ||+ |+.
T Consensus       862 ~em~~g~~  869 (1034)
T KOG0608|consen  862 YEMLVGQP  869 (1034)
T ss_pred             HHHhhCCC
Confidence             998 765

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.91  E-value=3.1e-24  Score=165.35  Aligned_cols=174  Identities=17%  Similarity=0.143  Sum_probs=140.8

Q ss_pred             HHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecC
Q 044211           28 AEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLET  104 (292)
Q Consensus        28 ~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~  104 (292)
                      .+++...... +|++|.|-+-.+..       +|+..|+|.+...- .+...++++|+++..+. ..|.+|+++|.+...
T Consensus        45 ad~L~~i~elGrGayG~vekmrh~~-------sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~re  117 (282)
T KOG0984|consen   45 ADDLVGIEELGRGAYGVVEKMRHIQ-------SGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFRE  117 (282)
T ss_pred             hhhhhhhhhhcCCccchhhheeecc-------CCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhcc
Confidence            3444444443 89999998888875       99999999987642 33446788888877665 689999999999999


Q ss_pred             CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          105 QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       105 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                      ...|+.||.++ .||..+-++..   ..+..+++..+-+|+..++.||.|||+  +..++|||+||+||||+.+|.+|+|
T Consensus       118 gdvwIcME~M~-tSldkfy~~v~---~~g~~ipE~vlGkIa~Svv~al~~L~~--kL~vIHRDvKPsNiLIn~~GqVKiC  191 (282)
T KOG0984|consen  118 GDVWICMELMD-TSLDKFYRKVL---KKGGTIPEDVLGKIAVSVVHALEFLHS--KLSVIHRDVKPSNILINYDGQVKIC  191 (282)
T ss_pred             ccEEEeHHHhh-hhHHHHHHHHH---hcCCcCchHHhhHhHHHHHHHHHHHHH--HhhhhhccCCcceEEEccCCcEEEc
Confidence            99999999998 59987775432   467889999999999999999999997  6799999999999999999999999


Q ss_pred             ecccccccCCCCccchhhhhcccccccccccC
Q 044211          185 DFSFSISIPEGETHISELLSGLRAFDLARLNE  216 (292)
Q Consensus       185 Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~  216 (292)
                      |||++-.+.+.  -..+...|...|++||...
T Consensus       192 DFGIsG~L~dS--iAkt~daGCkpYmaPEri~  221 (282)
T KOG0984|consen  192 DFGISGYLVDS--IAKTMDAGCKPYMAPERIN  221 (282)
T ss_pred             ccccceeehhh--hHHHHhcCCCccCChhhcC
Confidence            99999877542  2334467888887765543

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.91  E-value=1.1e-23  Score=198.15  Aligned_cols=158  Identities=20%  Similarity=0.155  Sum_probs=133.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|+||.||+|.+..       +++.||||+++...   ......+..|+.++..++|+||+++++++...+..++||||+
T Consensus        14 ~G~fg~Vy~a~~~~-------~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVmEy~   86 (669)
T cd05610          14 RGAFGKVYLGRKKN-------NSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVMEYL   86 (669)
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEEeCC
Confidence            89999999999975       78999999987532   223467889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+++|.+++.       ....+++..++.|+.||+.||.|||   ..+|+|+||||+|||++.++.+||+|||+++....
T Consensus        87 ~g~~L~~li~-------~~~~l~~~~~~~i~~qil~aL~yLH---~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~~  156 (669)
T cd05610          87 IGGDVKSLLH-------IYGYFDEEMAVKYISEVALALDYLH---RHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLN  156 (669)
T ss_pred             CCCCHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCccHHHEEEcCCCCEEEEeCCCCccccC
Confidence            9999999993       2345888999999999999999999   88999999999999999999999999999987654


Q ss_pred             CCccchhhhhccccccccc
Q 044211          195 GETHISELLSGLRAFDLAR  213 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~  213 (292)
                      .... .....+++.|.+++
T Consensus       157 ~~~~-~~~~~~t~~~~~pe  174 (669)
T cd05610         157 RELN-MMDILTTPSMAKPK  174 (669)
T ss_pred             Cccc-ccccccCccccCcc
Confidence            3322 22345666665554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.6e-24  Score=178.17  Aligned_cols=219  Identities=16%  Similarity=0.224  Sum_probs=169.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+|+.|..+.+.+       +.+.||+|++++.   ..+.++=...|-.++... +||.+|-++.+|.+...+++|.||
T Consensus       260 rgsyakvl~~~~~~-------t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffviey  332 (593)
T KOG0695|consen  260 RGSYAKVLLVRLKK-------TDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFVIEY  332 (593)
T ss_pred             Ccchhhhhheehcc-------cceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEEEEE
Confidence            89999999999987       9999999998753   223344455677777776 699999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|--.+       +....++++.+..+..+|+-||+|||   ..+|+.||||..|+|++..|.+||.|||+++.-.
T Consensus       333 v~ggdlmfhm-------qrqrklpeeharfys~ei~lal~flh---~rgiiyrdlkldnvlldaeghikltdygmcke~l  402 (593)
T KOG0695|consen  333 VNGGDLMFHM-------QRQRKLPEEHARFYSAEICLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGL  402 (593)
T ss_pred             ecCcceeeeh-------hhhhcCcHHHhhhhhHHHHHHHHHHh---hcCeeeeeccccceEEccCCceeecccchhhcCC
Confidence            9999998888       45667999999999999999999999   9999999999999999999999999999987543


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchh-hhhhccc-----hhhhcccccccCCCCCCc
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIK-KYFEEDR-----LNEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~  253 (292)
                      .+. ...+.++||+.|.+|++...-           ||+  ||+ |+.+ ......+     ..-+++-.+..+...|. 
T Consensus       403 ~~g-d~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqiripr-  480 (593)
T KOG0695|consen  403 GPG-DTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIRIPR-  480 (593)
T ss_pred             CCC-cccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhcccccc-
Confidence            322 234678999999988887644           888  888 6652 1111111     11122222333333332 


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                       ..+.....++..-|++||.+|-
T Consensus       481 -slsvkas~vlkgflnkdp~erl  502 (593)
T KOG0695|consen  481 -SLSVKASHVLKGFLNKDPKERL  502 (593)
T ss_pred             -eeehhhHHHHHHhhcCCcHHhc
Confidence             4455677888999999999985

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.89  E-value=6.2e-23  Score=171.16  Aligned_cols=224  Identities=15%  Similarity=0.153  Sum_probs=165.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-C-CC----ccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-H-RC----IFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h-~n----iv~~~~~~~~~~~~~lv~  111 (292)
                      +|.||.|-.+....       ++..||||+++.... ..+..+-|++.|.++. + |+    ++++.+||.-.+..++|+
T Consensus        99 eGtFGkV~ec~D~~-------~~~~vAlKIik~V~k-YreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivf  170 (415)
T KOG0671|consen   99 EGTFGKVVECWDRE-------TKEHVALKIIKNVDK-YREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVF  170 (415)
T ss_pred             CCcccceEEEeecC-------CCceehHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEE
Confidence            99999999999986       789999999987632 2345678999999994 2 32    678888999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC--------------
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE--------------  177 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~--------------  177 (292)
                      |.+. -|+.++++     .++-.+++...+..|+.|++.+++|||   ..+++|-||||+|||+.+              
T Consensus       171 ellG-~S~~dFlk-----~N~y~~fpi~~ir~m~~QL~~sv~fLh---~~kl~HTDLKPENILfvss~~~~~~~~k~~~~  241 (415)
T KOG0671|consen  171 ELLG-LSTFDFLK-----ENNYIPFPIDHIRHMGYQLLESVAFLH---DLKLTHTDLKPENILFVSSEYFKTYNPKKKVC  241 (415)
T ss_pred             eccC-hhHHHHhc-----cCCccccchHHHHHHHHHHHHHHHHHH---hcceeecCCChheEEEeccceEEEeccCCccc
Confidence            9996 49999994     345678999999999999999999999   999999999999999932              


Q ss_pred             ------CCceEEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhh-hhhccch
Q 044211          178 ------ENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKK-YFEEDRL  236 (292)
Q Consensus       178 ------~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~-~~~~~~~  236 (292)
                            +..+++.|||.|.......    ...+.|..|.+||+.-.-           |||  |+. |...- ..++..-
T Consensus       242 ~~r~~ks~~I~vIDFGsAtf~~e~h----s~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EH  317 (415)
T KOG0671|consen  242 FIRPLKSTAIKVIDFGSATFDHEHH----STIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEH  317 (415)
T ss_pred             eeccCCCcceEEEecCCcceeccCc----ceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHH
Confidence                  3358999999998665443    346678899888775432           888  888 65510 0110000


Q ss_pred             hhhcccccccCCC----------------------------------CC--------CchHHHHHHHHHHhHhcCCCCCC
Q 044211          237 NEIIDPLIMGDRS----------------------------------CS--------GNQQQLQAFAHLIFECVNESPVD  274 (292)
Q Consensus       237 ~~~~~~~~~~~~~----------------------------------~~--------~~~~~~~~l~~li~~Cl~~dP~~  274 (292)
                      ...++ .+.++.|                                  .+        ..+.....|.+|+.++|.+||.+
T Consensus       318 LaMMe-rIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~  396 (415)
T KOG0671|consen  318 LAMME-RILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPAR  396 (415)
T ss_pred             HHHHH-HhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccc
Confidence            00110 0111000                                  00        01355667999999999999999


Q ss_pred             CC-HHHHHHH
Q 044211          275 RP-MVDVAKK  283 (292)
Q Consensus       275 RP-~~el~~~  283 (292)
                      |+ +.|++..
T Consensus       397 RiTl~EAL~H  406 (415)
T KOG0671|consen  397 RITLREALSH  406 (415)
T ss_pred             cccHHHHhcC
Confidence            99 9998753

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.89  E-value=2.1e-23  Score=182.04  Aligned_cols=160  Identities=17%  Similarity=0.163  Sum_probs=137.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--------chHHHHHHHHHHHHhcC---CCCccceeeeeecCCc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--------RTYDCCINNIVYASQMI---HRCIFKLIGCCLETQI  106 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~~~  106 (292)
                      .|+||.|+.|.++.       +...|+||.+.+.+-        .....+-.|+++|++|+   |+||++++++|++++.
T Consensus       571 ~GAyGkV~lai~K~-------n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEddd~  643 (772)
T KOG1152|consen  571 EGAYGKVNLAIHKE-------NNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDDDY  643 (772)
T ss_pred             ccccceEEEeeecc-------cceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecCCe
Confidence            89999999999986       788999999865321        11123567999999997   9999999999999999


Q ss_pred             ceEEEecc-CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEee
Q 044211          107 PILVFEYI-NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFD  185 (292)
Q Consensus       107 ~~lv~e~~-~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~D  185 (292)
                      +|+++|-. ++.+|.++|       .-.+.+++.....|+.||+.|+++||   ..+|+|||||-+|+.++.+|-+||.|
T Consensus       644 yyl~te~hg~gIDLFd~I-------E~kp~m~E~eAk~IFkQV~agi~hlh---~~~ivhrdikdenvivd~~g~~klid  713 (772)
T KOG1152|consen  644 YYLETEVHGEGIDLFDFI-------EFKPRMDEPEAKLIFKQVVAGIKHLH---DQGIVHRDIKDENVIVDSNGFVKLID  713 (772)
T ss_pred             eEEEecCCCCCcchhhhh-------hccCccchHHHHHHHHHHHhcccccc---ccCceecccccccEEEecCCeEEEee
Confidence            99999985 677999999       34567999999999999999999999   99999999999999999999999999


Q ss_pred             cccccccCCCCccchhhhhcccccccccccCC
Q 044211          186 FSFSISIPEGETHISELLSGLRAFDLARLNED  217 (292)
Q Consensus       186 fg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~  217 (292)
                      ||.|....++.   ...+.||..|.+|++...
T Consensus       714 fgsaa~~ksgp---fd~f~gtv~~aapevl~g  742 (772)
T KOG1152|consen  714 FGSAAYTKSGP---FDVFVGTVDYAAPEVLGG  742 (772)
T ss_pred             ccchhhhcCCC---cceeeeeccccchhhhCC
Confidence            99998776543   356889999988876653

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.89  E-value=2.8e-22  Score=173.44  Aligned_cols=131  Identities=15%  Similarity=0.079  Sum_probs=103.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-----CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-----KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||+||+|.+..      .+++.||||.+...     .......+.+|+.+|++++|+|++..+..+   +..++|||
T Consensus        28 ~G~fg~Vy~a~~~~------~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~---~~~~LVmE   98 (365)
T PRK09188         28 RDVFSTVERGYFAG------DPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT---GKDGLVRG   98 (365)
T ss_pred             ecCcEEEEEEEEcC------CCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc---CCcEEEEE
Confidence            99999999998742      04677899987532     112345689999999999999998533222   46799999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC-CCCceEecCCCceEEeecccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF-KLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dl-k~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      |+++++|....        ...      ...++.+++.||.|||   ..+|+|||| ||+|||++.++.+||+|||+|+.
T Consensus        99 ~~~G~~L~~~~--------~~~------~~~~~~~i~~aL~~lH---~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~  161 (365)
T PRK09188         99 WTEGVPLHLAR--------PHG------DPAWFRSAHRALRDLH---RAGITHNDLAKPQNWLMGPDGEAAVIDFQLASV  161 (365)
T ss_pred             ccCCCCHHHhC--------ccc------hHHHHHHHHHHHHHHH---HCCCeeCCCCCcceEEEcCCCCEEEEECcccee
Confidence            99999996221        111      1467889999999999   899999999 99999999999999999999987


Q ss_pred             cCC
Q 044211          192 IPE  194 (292)
Q Consensus       192 ~~~  194 (292)
                      +..
T Consensus       162 ~~~  164 (365)
T PRK09188        162 FRR  164 (365)
T ss_pred             ccc
Confidence            754

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.88  E-value=2.8e-22  Score=159.76  Aligned_cols=136  Identities=13%  Similarity=0.140  Sum_probs=105.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc--h-------HH-----------------HHHHHHHHHHhcCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR--T-------YD-----------------CCINNIVYASQMIH   91 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~--~-------~~-----------------~~~~e~~~l~~l~h   91 (292)
                      +|+||.||+|...        +|++||+|+++.....  .       ..                 ....|+..+.++.+
T Consensus         7 ~G~~~~Vy~a~~~--------~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~   78 (190)
T cd05147           7 TGKEANVYHATTA--------NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVT   78 (190)
T ss_pred             cccceEEEEEECC--------CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999996        8999999998654211  1       01                 12349999999988


Q ss_pred             CCccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCCcccCCCCC
Q 044211           92 RCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYL-HVGFPRPVIFRDFKL  170 (292)
Q Consensus        92 ~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~l-h~~~~~~i~H~dlk~  170 (292)
                      +++........  ...++||||++++++...+       .....++...+..++.|++.+|.++ |   ..+++||||||
T Consensus        79 ~~v~~p~~~~~--~~~~iVmE~i~g~~l~~~~-------~~~~~~~~~~~~~i~~qi~~~L~~l~H---~~giiHrDlkP  146 (190)
T cd05147          79 AGIPCPEPILL--KSHVLVMEFIGDDGWAAPR-------LKDAPLSESKARELYLQVIQIMRILYQ---DCRLVHADLSE  146 (190)
T ss_pred             CCCCCCcEEEe--cCCEEEEEEeCCCCCcchh-------hhcCCCCHHHHHHHHHHHHHHHHHHHH---hCCcccCCCCH
Confidence            77644332222  2348999999987776553       1235688899999999999999999 7   78999999999


Q ss_pred             CceEecCCCceEEeecccccccCC
Q 044211          171 SNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       171 ~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +||+++ ++.++|+|||+|.....
T Consensus       147 ~NIli~-~~~v~LiDFG~a~~~~~  169 (190)
T cd05147         147 YNLLYH-DGKLYIIDVSQSVEHDH  169 (190)
T ss_pred             HHEEEE-CCcEEEEEccccccCCC
Confidence            999998 47899999999976543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.88  E-value=3.1e-23  Score=166.23  Aligned_cols=251  Identities=15%  Similarity=0.182  Sum_probs=195.2

Q ss_pred             HhcCCCCCccccccHHHHHHHhhC-ccCCCeeEeeecCCCCccCccCCeEEEEEeecC--CCcchHHHHHHHHHHHHhcC
Q 044211           14 SSSKGKYNPIRSFCAEELKTTHNA-IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE--SKPRTYDCCINNIVYASQMI   90 (292)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~-~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~~e~~~l~~l~   90 (292)
                      ..+++..+....+++..+...|.. +.-.|..|+|+|         +|..++.|+++.  ......+.|..|+..|+-+.
T Consensus       175 r~rdatlsr~~gid~~~lnl~tkl~e~hsgelwrgrw---------qgndivakil~vr~~t~risrdfneefp~lrifs  245 (448)
T KOG0195|consen  175 RTRDATLSRYTGIDVSSLNLITKLAESHSGELWRGRW---------QGNDIVAKILNVREVTARISRDFNEEFPALRIFS  245 (448)
T ss_pred             cccccccccccCcchhhhhhhhhhccCCCcccccccc---------cCcchhhhhhhhhhcchhhcchhhhhCcceeeec
Confidence            345566677778888888888776 777899999999         778888888764  33444567999999999999


Q ss_pred             CCCccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCC
Q 044211           91 HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKL  170 (292)
Q Consensus        91 h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~  170 (292)
                      ||||+.++|.|.++..+.++..|++.|||..++  |.   ......+..+..+++.+++.|++|||+- ..-|.--.|+.
T Consensus       246 hpnilpvlgacnsppnlv~isq~mp~gslynvl--he---~t~vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns  319 (448)
T KOG0195|consen  246 HPNILPVLGACNSPPNLVIISQYMPFGSLYNVL--HE---QTSVVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNS  319 (448)
T ss_pred             CCchhhhhhhccCCCCceEeeeeccchHHHHHH--hc---CccEEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhccc
Confidence            999999999999999999999999999999999  32   3456778889999999999999999963 22333445899


Q ss_pred             CceEecCCCceEEe--ecccccccCCCCccchhhhhcccccccccccCCC--------------CeE--EEccchhhhhh
Q 044211          171 SNILFNEENVAKLF--DFSFSISIPEGETHISELLSGLRAFDLARLNEDD--------------GYV--VLLDHIKKYFE  232 (292)
Q Consensus       171 ~nili~~~~~~kl~--Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~--------------Gvi--el~~~~~~~~~  232 (292)
                      ..++|+++.+++|+  |--++.+.....+        .+.|++|+...+.              .++  |+.++..||.+
T Consensus       320 ~hvmidedltarismad~kfsfqe~gr~y--------~pawmspealqrkped~n~raadmwsfaillwel~trevpfad  391 (448)
T KOG0195|consen  320 KHVMIDEDLTARISMADTKFSFQEVGRAY--------SPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFAD  391 (448)
T ss_pred             ceEEecchhhhheecccceeeeecccccc--------CcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhcccccccc
Confidence            99999999887775  4333333222222        3556666555443              444  77777778877


Q ss_pred             ccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          233 EDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      -.+...-+...+.+.+...+ +.....+.+|+.-|++.||.+|| +..|+-.|++++
T Consensus       392 lspmecgmkialeglrv~ip-pgis~hm~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  392 LSPMECGMKIALEGLRVHIP-PGISRHMNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             CCchhhhhhhhhccccccCC-CCccHHHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence            77777777777777766554 47788899999999999999999 999999999875

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.87  E-value=6.9e-22  Score=170.79  Aligned_cols=174  Identities=18%  Similarity=0.128  Sum_probs=136.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC------CCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI------HRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~------h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|-|++|.+|....       .++.||||++...-.. .+.=+.|+++|++|+      --|.++++..|...+.++||+
T Consensus       442 kGvFs~Vvra~D~~-------r~~~vAiKIIRnNE~M-~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLClVF  513 (752)
T KOG0670|consen  442 KGVFSTVVRARDQA-------RGQEVAIKIIRNNEVM-HKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCLVF  513 (752)
T ss_pred             cceeeeeeeccccC-------CCCeeEEEEeecchHH-hhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEEEe
Confidence            89999999999976       8889999999765211 233468999999995      237899999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC-CceEEeeccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE-NVAKLFDFSFSI  190 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~-~~~kl~Dfg~a~  190 (292)
                      |-+. .+|.++++..+    ..-.|....+..++.|+.-||..|-   ..+|+|.||||.|||+++. ..+||||||.|.
T Consensus       514 E~Ls-lNLRevLKKyG----~nvGL~ikaVRsYaqQLflALklLK---~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~  585 (752)
T KOG0670|consen  514 EPLS-LNLREVLKKYG----RNVGLHIKAVRSYAQQLFLALKLLK---KCGVLHADIKPDNILVNESKNILKLCDFGSAS  585 (752)
T ss_pred             hhhh-chHHHHHHHhC----cccceeehHHHHHHHHHHHHHHHHH---hcCeeecccCccceEeccCcceeeeccCcccc
Confidence            9998 59999998765    3566788899999999999999999   9999999999999999954 679999999999


Q ss_pred             ccCCCCccch--hhhhccc------ccccccccCCCCeE--EEc-cch
Q 044211          191 SIPEGETHIS--ELLSGLR------AFDLARLNEDDGYV--VLL-DHI  227 (292)
Q Consensus       191 ~~~~~~~~~~--~~~~g~~------~y~~~~~~~~~Gvi--el~-~~~  227 (292)
                      ....++.++.  +.+...+      .|..+.-++..||.  ||+ |+.
T Consensus       586 ~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkI  633 (752)
T KOG0670|consen  586 FASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKI  633 (752)
T ss_pred             ccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccce
Confidence            8877765542  1122222      23334333444887  777 654

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.87  E-value=2e-22  Score=164.63  Aligned_cols=167  Identities=20%  Similarity=0.236  Sum_probs=132.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC------cceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ------IPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~l  109 (292)
                      .|.- .|..+.+..       .+++||+|.+...  .....++..+|+.++..+.|+||++++.++....      ..|+
T Consensus        27 ~g~~-~v~~a~D~v-------~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~   98 (369)
T KOG0665|consen   27 SGAQ-IVVAAFDQV-------LGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYL   98 (369)
T ss_pred             CCCc-eEEecchhh-------ccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHH
Confidence            4444 577776655       8999999997543  2334577889999999999999999999997543      4689


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      |||++.. ||.+.+         ...++...+..++.|+++|++|||   +.+|+||||||+||++..+..+||.|||+|
T Consensus        99 v~e~m~~-nl~~vi---------~~elDH~tis~i~yq~~~~ik~lh---s~~IihRdLkPsnivv~~~~~lKi~dfg~a  165 (369)
T KOG0665|consen   99 VMELMDA-NLCQVI---------LMELDHETISYILYQMLCGIKHLH---SAGIIHRDLKPSNIVVNSDCTLKILDFGLA  165 (369)
T ss_pred             HHHhhhh-HHHHHH---------HHhcchHHHHHHHHHHHHHHHHHH---hcceeecccCcccceecchhheeeccchhh
Confidence            9999994 999999         266888999999999999999999   999999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cch
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHI  227 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~  227 (292)
                      +....+  -.-+....+.-|.++++.-..           ||+  ||+ |..
T Consensus       166 r~e~~~--~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~V  215 (369)
T KOG0665|consen  166 RTEDTD--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTV  215 (369)
T ss_pred             cccCcc--cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceE
Confidence            866544  122334556666555544322           888  777 654

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.87  E-value=2.5e-22  Score=157.23  Aligned_cols=221  Identities=17%  Similarity=0.223  Sum_probs=159.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeeecCC--cceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQ--IPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~--~~~lv~e~~  114 (292)
                      +|.++.||.|....       +.+.++||++++.+   .+.+.+|+.+|..|+ ||||++++++..++.  .+.+++||+
T Consensus        48 RGKYSEVFeg~~~~-------~~eK~ViKiLKPVk---kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v  117 (338)
T KOG0668|consen   48 RGKYSEVFEGINIT-------NNEKCVIKILKPVK---KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYV  117 (338)
T ss_pred             CccHhhHhcccccC-------CCceEEEeeechHH---HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhh
Confidence            89999999999765       88999999999774   467889999999996 999999999998743  478999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-CCceEEeecccccccC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-ENVAKLFDFSFSISIP  193 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~a~~~~  193 (292)
                      ++.+...+.          +.++...+..++.++++||.|+|   +.||+|||+||.|++|+. .-.++|.|+|+|....
T Consensus       118 ~n~Dfk~ly----------~tl~d~dIryY~~elLkALdyCH---S~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYH  184 (338)
T KOG0668|consen  118 NNTDFKQLY----------PTLTDYDIRYYIYELLKALDYCH---SMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYH  184 (338)
T ss_pred             ccccHHHHh----------hhhchhhHHHHHHHHHHHHhHHH---hcCcccccCCcceeeechhhceeeeeecchHhhcC
Confidence            998887776          56788899999999999999999   999999999999999994 4579999999998876


Q ss_pred             CCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhc------------------
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEII------------------  240 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~------------------  240 (292)
                      ++....  -.+.+.-|..|+....-            ||+  .|+ .+.+.|....+..+++                  
T Consensus       185 p~~eYn--VRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY  262 (338)
T KOG0668|consen  185 PGKEYN--VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKY  262 (338)
T ss_pred             CCceee--eeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHH
Confidence            544321  11222223333332211            666  555 4432222222222111                  


Q ss_pred             ----cccccc---CCC------C--CCchH-HHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          241 ----DPLIMG---DRS------C--SGNQQ-QLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       241 ----~~~~~~---~~~------~--~~~~~-~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                          ++...+   ..+      +  ..+.. ..++..+++.+.|.+|-.+|| +.|.+..
T Consensus       263 ~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~H  322 (338)
T KOG0668|consen  263 QIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAH  322 (338)
T ss_pred             ccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhcC
Confidence                111110   000      0  00011 247889999999999999999 9998753

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.87  E-value=1.4e-21  Score=159.83  Aligned_cols=194  Identities=22%  Similarity=0.230  Sum_probs=149.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|++|.||++....       +++.+++|.+...... ....+.+|+..+++++|+|++++++++......++++||+.+
T Consensus         9 ~g~~~~v~~~~~~~-------~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~   81 (225)
T smart00221        9 EGAFGKVYLARDKG-------TGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEG   81 (225)
T ss_pred             cCCCeEEEEEEEcC-------CCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCC
Confidence            78999999999964       5899999999876444 567899999999999999999999999988899999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++...      ...+++..+..++.+++.++.+||   ..+++|+|++|+||+++.++.++|+|||.+.......
T Consensus        82 ~~L~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~  152 (225)
T smart00221       82 GDLFDYLRKK------GGKLSEEEARFYLRQILEALEYLH---SLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDL  152 (225)
T ss_pred             CCHHHHHHhc------ccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcc
Confidence            9999999422      111888999999999999999999   8899999999999999999999999999998775442


Q ss_pred             ccchhhhhccccccccccc-------CCC-----CeE--EEccchhhhhh-ccchhhhcccccccC
Q 044211          197 THISELLSGLRAFDLARLN-------EDD-----GYV--VLLDHIKKYFE-EDRLNEIIDPLIMGD  247 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~-------~~~-----Gvi--el~~~~~~~~~-~~~~~~~~~~~~~~~  247 (292)
                      ........++..|++++..       .++     |++  +|+....|+.. ........+....+.
T Consensus       153 ~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~~~~~~~~~~~~~~~~~  218 (225)
T smart00221      153 AALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSGEGEFTSLLSDVWSFGV  218 (225)
T ss_pred             cccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccccchhHHHHHHHHhcCC
Confidence            1112234456667666654       222     766  77733344433 233334444433333

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.86  E-value=4.1e-21  Score=153.47  Aligned_cols=137  Identities=12%  Similarity=0.149  Sum_probs=107.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc---------------------h-----HHHHHHHHHHHHhcCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR---------------------T-----YDCCINNIVYASQMIH   91 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~---------------------~-----~~~~~~e~~~l~~l~h   91 (292)
                      +|+||.||+|...        +|+.||||.++.....                     .     ...+..|...+.++.|
T Consensus         7 ~G~~~~Vy~a~~~--------~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~   78 (190)
T cd05145           7 TGKEANVYHARTG--------DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYE   78 (190)
T ss_pred             cCCCcEEEEEEcC--------CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            7999999999986        8999999998754211                     0     1123578999999999


Q ss_pred             CCccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCcccCCCCC
Q 044211           92 RCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP-RPVIFRDFKL  170 (292)
Q Consensus        92 ~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-~~i~H~dlk~  170 (292)
                      +++.....+...  ..++||||++++++.....       ....++......++.+++.++.++|   . .+++|+||||
T Consensus        79 ~~i~~p~~~~~~--~~~lVmE~~~g~~~~~~~l-------~~~~~~~~~~~~i~~~l~~~l~~lH---~~~givHrDlkP  146 (190)
T cd05145          79 AGVPVPEPILLK--KNVLVMEFIGDDGSPAPRL-------KDVPLEEEEAEELYEQVVEQMRRLY---QEAGLVHGDLSE  146 (190)
T ss_pred             CCCCCceEEEec--CCEEEEEEecCCCchhhhh-------hhccCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCh
Confidence            987544443332  3489999999876544320       2345778889999999999999999   7 9999999999


Q ss_pred             CceEecCCCceEEeecccccccCCC
Q 044211          171 SNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       171 ~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +||+++ ++.++|+|||++.....+
T Consensus       147 ~NIll~-~~~~~liDFG~a~~~~~~  170 (190)
T cd05145         147 YNILYH-DGKPYIIDVSQAVELDHP  170 (190)
T ss_pred             hhEEEE-CCCEEEEEcccceecCCC
Confidence            999999 789999999999877543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.84  E-value=6.6e-20  Score=146.99  Aligned_cols=150  Identities=17%  Similarity=0.229  Sum_probs=121.1

Q ss_pred             cccHHHHHHHhhC--ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeee
Q 044211           25 SFCAEELKTTHNA--IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCC  101 (292)
Q Consensus        25 ~~~~~~~~~~~~~--~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~  101 (292)
                      .+.+.+...+...  +|.||.+-.+.++.       +.+.+++|.+..... ...+|.+|+..---| .|.||+.-+++.
T Consensus        19 kv~l~d~y~I~k~lgeG~FgkIlL~eHr~-------s~t~ivlKavp~p~t-t~~dF~rEfhY~~~Ls~H~hIi~tY~va   90 (378)
T KOG1345|consen   19 KVDLEDVYTINKQLGEGRFGKILLAEHRQ-------SKTRIVLKAVPRPQT-TQADFVREFHYSFFLSPHQHIIDTYEVA   90 (378)
T ss_pred             ccchhhhhhHHHHhcccceeeEEeeeccC-------CceEEEeeccCcchh-hHHHHHHHhccceeeccchhhhHHHHHH
Confidence            3444444444433  99999999999987       889999999876532 346788888766666 489999877654


Q ss_pred             -ecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec--CC
Q 044211          102 -LETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN--EE  178 (292)
Q Consensus       102 -~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~--~~  178 (292)
                       .+.+.+++++||++.|+|.+.+        ....+-+..-.+++.|+++|+.|+|   +.+++|||||.+||||-  +.
T Consensus        91 Fqt~d~YvF~qE~aP~gdL~snv--------~~~GigE~~~K~v~~ql~SAi~fMH---sknlVHRdlK~eNiLif~~df  159 (378)
T KOG1345|consen   91 FQTSDAYVFVQEFAPRGDLRSNV--------EAAGIGEANTKKVFAQLLSAIEFMH---SKNLVHRDLKAENILIFDADF  159 (378)
T ss_pred             hhcCceEEEeeccCccchhhhhc--------CcccccHHHHHHHHHHHHHHHHHhh---ccchhhcccccceEEEecCCc
Confidence             4567788999999999999888        3466888888999999999999999   99999999999999995  33


Q ss_pred             CceEEeecccccccC
Q 044211          179 NVAKLFDFSFSISIP  193 (292)
Q Consensus       179 ~~~kl~Dfg~a~~~~  193 (292)
                      -++||||||++....
T Consensus       160 ~rvKlcDFG~t~k~g  174 (378)
T KOG1345|consen  160 YRVKLCDFGLTRKVG  174 (378)
T ss_pred             cEEEeeecccccccC
Confidence            479999999987553

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.83  E-value=2.5e-20  Score=157.52  Aligned_cols=134  Identities=21%  Similarity=0.258  Sum_probs=118.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|.|++||++.+...    ......||+|.+...+  ...++.+|++.|..+ .+.||+++.+++..++...+|+||++.
T Consensus        46 eGsFssv~~a~~~~~----~~~~~~valk~i~~ts--~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivlp~~~H  119 (418)
T KOG1167|consen   46 EGSFSSVYKATDIEQ----DTKRRYVALKAIYRTS--SPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVLPYFEH  119 (418)
T ss_pred             ccchhhhhhhhHhhh----ccccceEeeeeccccc--CchHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEecccCc
Confidence            999999999998631    1245689999987764  356699999999999 589999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec-CCCceEEeeccccc
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN-EENVAKLFDFSFSI  190 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~-~~~~~kl~Dfg~a~  190 (292)
                      ....++.          ..++...+..++..+..||.++|   ..||+|||+||+|+|.+ ..+.-.|.|||+|.
T Consensus       120 ~~f~~l~----------~~l~~~~i~~Yl~~ll~Al~~~h---~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~  181 (418)
T KOG1167|consen  120 DRFRDLY----------RSLSLAEIRWYLRNLLKALAHLH---KNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQ  181 (418)
T ss_pred             cCHHHHH----------hcCCHHHHHHHHHHHHHHhhhhh---ccCccccCCCccccccccccCCceEEechhHH
Confidence            9998888          34668889999999999999999   99999999999999999 56789999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.82  E-value=5.4e-21  Score=183.73  Aligned_cols=180  Identities=12%  Similarity=0.113  Sum_probs=117.9

Q ss_pred             cCC-CCccceeeee-------ecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 044211           89 MIH-RCIFKLIGCC-------LETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP  160 (292)
Q Consensus        89 l~h-~niv~~~~~~-------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~  160 (292)
                      ++| .||+.+++++       .....+++++||+. ++|.+++.      .....+++..+..++.||+.||.|||   .
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~------~~~~~~~~~~~~~i~~qi~~al~~lH---~   98 (793)
T PLN00181         29 LSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECED-VSLRQWLD------NPDRSVDAFECFHVFRQIVEIVNAAH---S   98 (793)
T ss_pred             hhHHHHHHHhhcccCCccccccccchhhhhhccCC-ccHHHHHh------cccccccHHHHHHHHHHHHHHHHHHH---h
Confidence            344 5777777776       22345677889886 69999993      23456999999999999999999999   8


Q ss_pred             CCcccCCCCCCceEecC-------------------CCceEEeecccccccCCCCc---------------cchhhhhcc
Q 044211          161 RPVIFRDFKLSNILFNE-------------------ENVAKLFDFSFSISIPEGET---------------HISELLSGL  206 (292)
Q Consensus       161 ~~i~H~dlk~~nili~~-------------------~~~~kl~Dfg~a~~~~~~~~---------------~~~~~~~g~  206 (292)
                      .+|+||||||+||||+.                   ++.+|++|||+++.......               .......||
T Consensus        99 ~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  178 (793)
T PLN00181         99 QGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEM  178 (793)
T ss_pred             CCeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCC
Confidence            99999999999999964                   34566666666653211000               000123578


Q ss_pred             cccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCC
Q 044211          207 RAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESP  272 (292)
Q Consensus       207 ~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP  272 (292)
                      +.|++||+....           ||+  ||+ +.. ++.........+....   .+. ......+...+++.+||+.||
T Consensus       179 ~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~-~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~L~~~P  253 (793)
T PLN00181        179 SWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVS-SREEKSRTMSSLRHRV---LPP-QILLNWPKEASFCLWLLHPEP  253 (793)
T ss_pred             cceEChhhhccCCCCchhhhhhHHHHHHHHhhCCC-chhhHHHHHHHHHHhh---cCh-hhhhcCHHHHHHHHHhCCCCh
Confidence            889988875422           888  888 543 3222111111111111   111 101234456789999999999


Q ss_pred             CCCC-HHHHHHH
Q 044211          273 VDRP-MVDVAKK  283 (292)
Q Consensus       273 ~~RP-~~el~~~  283 (292)
                      .+|| +.|+++.
T Consensus       254 ~~Rps~~eil~h  265 (793)
T PLN00181        254 SCRPSMSELLQS  265 (793)
T ss_pred             hhCcChHHHhhc
Confidence            9999 9999763

>PRK10345 hypothetical protein; Provisional

Probab=99.82  E-value=2e-19  Score=144.80  Aligned_cols=130  Identities=11%  Similarity=0.056  Sum_probs=101.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-----CCCCccceeeeeecCC---c-ce
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-----IHRCIFKLIGCCLETQ---I-PI  108 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-----~h~niv~~~~~~~~~~---~-~~  108 (292)
                      +|+||.||.  +..       +... +||.+........+.+.+|+.+++.+     .||||++++|++.++.   . ..
T Consensus        12 ~G~~~~Vy~--hp~-------~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~   81 (210)
T PRK10345         12 TGRHRKCYA--HPE-------DAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYD   81 (210)
T ss_pred             CCCceEEEE--CCC-------CcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEE
Confidence            899999996  431       4444 69988765444567799999999999     5799999999999864   3 33


Q ss_pred             EEEec--cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHH-HHhhcCCCCCcccCCCCCCceEecCC----Cce
Q 044211          109 LVFEY--INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAI-AYLHVGFPRPVIFRDFKLSNILFNEE----NVA  181 (292)
Q Consensus       109 lv~e~--~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l-~~lh~~~~~~i~H~dlk~~nili~~~----~~~  181 (292)
                      +|+||  +.+|+|.++++        ...+++.  ..++.+++.++ .|||   +.+|+||||||+|||++..    +.+
T Consensus        82 ~I~e~~G~~~~tL~~~l~--------~~~~~e~--~~~~~~~L~~l~~yLh---~~~IvhrDlKp~NILl~~~~~~~~~~  148 (210)
T PRK10345         82 VIADFDGKPSITLTEFAE--------QCRYEED--VAQLRQLLKKLKRYLL---DNRIVTMELKPQNILCQRISESEVIP  148 (210)
T ss_pred             EEecCCCCcchhHHHHHH--------cccccHh--HHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEeccCCCCCcE
Confidence            78999  66799999993        1235554  35677888777 9999   9999999999999999743    379


Q ss_pred             EEeec-cccc
Q 044211          182 KLFDF-SFSI  190 (292)
Q Consensus       182 kl~Df-g~a~  190 (292)
                      +|+|| |.+.
T Consensus       149 ~LiDg~G~~~  158 (210)
T PRK10345        149 VVCDNIGEST  158 (210)
T ss_pred             EEEECCCCcc
Confidence            99995 5443

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.78  E-value=2.7e-18  Score=139.57  Aligned_cols=130  Identities=18%  Similarity=0.200  Sum_probs=109.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc--------hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR--------TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~--------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l  109 (292)
                      +|++|.||+|.+         .+..|++|........        ....+.+|+.++..+.|++|.....++......++
T Consensus         6 ~G~~~~vy~~~~---------~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~l   76 (211)
T PRK14879          6 RGAEAEIYLGDF---------LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFII   76 (211)
T ss_pred             cCceEEEEEEee---------CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEE
Confidence            799999999998         7788999986543211        12357789999999999998877777777778899


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      +|||+++++|.+++.       ..   .. ....++.+++.+|.++|   ..+++|+|++|.||+++ ++.++++|||.+
T Consensus        77 v~e~~~G~~L~~~~~-------~~---~~-~~~~i~~~i~~~l~~lH---~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a  141 (211)
T PRK14879         77 VMEYIEGEPLKDLIN-------SN---GM-EELELSREIGRLVGKLH---SAGIIHGDLTTSNMILS-GGKIYLIDFGLA  141 (211)
T ss_pred             EEEEeCCcCHHHHHH-------hc---cH-HHHHHHHHHHHHHHHHH---hCCcccCCCCcccEEEE-CCCEEEEECCcc
Confidence            999999999999982       11   11 77889999999999999   89999999999999999 789999999998


Q ss_pred             cc
Q 044211          190 IS  191 (292)
Q Consensus       190 ~~  191 (292)
                      ..
T Consensus       142 ~~  143 (211)
T PRK14879        142 EF  143 (211)
T ss_pred             cC
Confidence            64

>smart00090 RIO RIO-like kinase

Probab=99.78  E-value=2.5e-18  Score=141.64  Aligned_cols=135  Identities=15%  Similarity=0.181  Sum_probs=104.1

Q ss_pred             ccCCCeeEeee-cCCCCccCccCCeEEEEEeecCCCcc------------------------hHHHHHHHHHHHHhcCCC
Q 044211           38 IKNGYKLYEGF-FQNRPISGFFQERPVSVMKFDESKPR------------------------TYDCCINNIVYASQMIHR   92 (292)
Q Consensus        38 ~G~~g~V~~~~-~~~~~~~~~~~~~~vaiK~~~~~~~~------------------------~~~~~~~e~~~l~~l~h~   92 (292)
                      +|+||.||+|. ...       +|+.||+|.++.....                        ....+..|+..+.++.+.
T Consensus        38 ~G~~g~Vy~a~~~~~-------~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~  110 (237)
T smart00090       38 TGKEANVYHALDFDG-------SGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEA  110 (237)
T ss_pred             cCcceeEEEEEecCC-------CCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999998 433       8999999998753210                        012356899999999753


Q ss_pred             C--ccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-cccCCCC
Q 044211           93 C--IFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP-VIFRDFK  169 (292)
Q Consensus        93 n--iv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~-i~H~dlk  169 (292)
                      +  +.++++.    ...++||||+.+.+|....       .....+....+..++.|++.++.+||   ..+ ++|+|+|
T Consensus       111 ~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~-------~~~~~~~~~~~~~i~~qi~~~l~~LH---~~g~iiH~Dik  176 (237)
T smart00090      111 GVPVPKPIAW----RRNVLVMEFIGGDGLPAPR-------LKDVEPEEEEEFELYDDILEEMRKLY---KEGELVHGDLS  176 (237)
T ss_pred             CCCCCeeeEe----cCceEEEEEecCCcccccc-------cccCCcchHHHHHHHHHHHHHHHHHH---hcCCEEeCCCC
Confidence            3  3344432    2458999999988887654       12334566677899999999999999   888 9999999


Q ss_pred             CCceEecCCCceEEeecccccccCC
Q 044211          170 LSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       170 ~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      |+||+++ ++.++|+|||.+.....
T Consensus       177 p~NIli~-~~~i~LiDFg~a~~~~~  200 (237)
T smart00090      177 EYNILVH-DGKVVIIDVSQSVELDH  200 (237)
T ss_pred             hhhEEEE-CCCEEEEEChhhhccCC
Confidence            9999999 88999999999876544

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.77  E-value=4.1e-18  Score=137.20  Aligned_cols=128  Identities=17%  Similarity=0.192  Sum_probs=104.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cc------hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PR------TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l  109 (292)
                      +|+||.||+|.+         ++..|++|......  ..      ...++.+|+.++..++|+++.....++...+..++
T Consensus         4 ~G~~~~vy~~~~---------~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~l   74 (199)
T TIGR03724         4 KGAEAIIYLGDF---------LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTI   74 (199)
T ss_pred             CCceEEEEEeec---------CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEE
Confidence            799999999997         78899999865321  11      12557789999999998876655555556667899


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      +|||+++++|.+++.       ....       .++.+++.+|.++|   ..+++|+|++|.||+++ ++.+++.|||++
T Consensus        75 v~e~~~g~~l~~~~~-------~~~~-------~~~~~i~~~l~~lH---~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a  136 (199)
T TIGR03724        75 VMEYIEGKPLKDVIE-------EGND-------ELLREIGRLVGKLH---KAGIVHGDLTTSNIIVR-DDKLYLIDFGLG  136 (199)
T ss_pred             EEEEECCccHHHHHh-------hcHH-------HHHHHHHHHHHHHH---HCCeecCCCCcceEEEE-CCcEEEEECCCC
Confidence            999999999998882       1110       78999999999999   89999999999999999 789999999998


Q ss_pred             ccc
Q 044211          190 ISI  192 (292)
Q Consensus       190 ~~~  192 (292)
                      ...
T Consensus       137 ~~~  139 (199)
T TIGR03724       137 KYS  139 (199)
T ss_pred             cCC
Confidence            654

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.76  E-value=6.2e-18  Score=136.75  Aligned_cols=128  Identities=18%  Similarity=0.128  Sum_probs=103.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHH---H------HHHHHHHHHhcCCCCccceeeeeecC----
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYD---C------CINNIVYASQMIHRCIFKLIGCCLET----  104 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~---~------~~~e~~~l~~l~h~niv~~~~~~~~~----  104 (292)
                      .|+||.||....         ++..+|+|.+.........   .      +.+|+..+.++.|++|..+..++...    
T Consensus        41 ~~~f~~v~l~~~---------~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~  111 (232)
T PRK10359         41 NIDDTKVSLIDT---------DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAERKT  111 (232)
T ss_pred             CCCceEEEEEec---------CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeeccccc
Confidence            899999999655         6668999999754332222   2      57899999999999999988875532    


Q ss_pred             ----CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc
Q 044211          105 ----QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV  180 (292)
Q Consensus       105 ----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~  180 (292)
                          +..+++|||++|.+|.++..           +++    ....+++.++..+|   ..+++|+|++|+||+++.+| 
T Consensus       112 ~~~~~~~~lvmEyi~G~tL~~~~~-----------~~~----~~~~~i~~~l~~lH---~~gi~H~Dikp~Nili~~~g-  172 (232)
T PRK10359        112 LRYAHTYIMLIEYIEGVELNDMPE-----------ISE----DVKAKIKASIESLH---QHGMVSGDPHKGNFIVSKNG-  172 (232)
T ss_pred             ccccCCeEEEEEEECCccHHHhhh-----------ccH----HHHHHHHHHHHHHH---HcCCccCCCChHHEEEeCCC-
Confidence                35789999999999987751           222    24568999999999   99999999999999999988 


Q ss_pred             eEEeecccccccC
Q 044211          181 AKLFDFSFSISIP  193 (292)
Q Consensus       181 ~kl~Dfg~a~~~~  193 (292)
                      ++|+|||......
T Consensus       173 i~liDfg~~~~~~  185 (232)
T PRK10359        173 LRIIDLSGKRCTA  185 (232)
T ss_pred             EEEEECCCccccc
Confidence            9999999987653

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.76  E-value=1.2e-17  Score=132.41  Aligned_cols=127  Identities=14%  Similarity=0.047  Sum_probs=102.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcch----HHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRT----YDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~----~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||+|+.+..         .+.+++.+.++....-.    ...+.+|+++|++|. |+++++++++    +..+++||
T Consensus        12 ~~~f~~v~~~~~---------~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvme   78 (218)
T PRK12274         12 SDTFGRILLVRG---------GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRS   78 (218)
T ss_pred             CCCcceEEEeec---------CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEe
Confidence            899999997776         78889988887663311    124789999999995 5889999886    35689999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC-CCCceEecCCCceEEeecccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF-KLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dl-k~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      |+.|.+|.+.+        ...      ...++.|++.+|.++|   ..+|+|+|| ||.|||++.++.++|+|||++..
T Consensus        79 yI~G~~L~~~~--------~~~------~~~~~~qi~~~L~~lH---~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~  141 (218)
T PRK12274         79 YLAGAAMYQRP--------PRG------DLAYFRAARRLLQQLH---RCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVR  141 (218)
T ss_pred             eecCccHHhhh--------hhh------hHHHHHHHHHHHHHHH---HCcCccCCCCCcceEEEcCCCCEEEEECCCcee
Confidence            99998886544        111      1346789999999999   999999999 79999999999999999999985


Q ss_pred             cCC
Q 044211          192 IPE  194 (292)
Q Consensus       192 ~~~  194 (292)
                      ...
T Consensus       142 ~~~  144 (218)
T PRK12274        142 GNP  144 (218)
T ss_pred             cCC
Confidence            543

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.74  E-value=3.5e-18  Score=134.80  Aligned_cols=149  Identities=21%  Similarity=0.218  Sum_probs=105.2

Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |||.++++.      ....+++..++.++.|++.||.|||   ..+      ||+|||++.++.+|+  ||++.......
T Consensus         1 GsL~~~l~~------~~~~l~~~~~~~i~~qi~~~L~~lH---~~~------kp~Nil~~~~~~~~~--fG~~~~~~~~~   63 (176)
T smart00750        1 VSLADILEV------RGRPLNEEEIWAVCLQCLRALRELH---RQA------KSGNILLTWDGLLKL--DGSVAFKTPEQ   63 (176)
T ss_pred             CcHHHHHHH------hCCCCCHHHHHHHHHHHHHHHHHHH---hcC------CcccEeEcCccceee--ccceEeecccc
Confidence            689999932      2456999999999999999999999   555      999999999999999  99987664422


Q ss_pred             ccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCC-----CCchHHH
Q 044211          197 THISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC-----SGNQQQL  257 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  257 (292)
                            ..|++.|++||+...      +     |++  ||+ |+. |+.........+........+.     ..+....
T Consensus        64 ------~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (176)
T smart00750       64 ------SRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYEL-PYNEERELSAILEILLNGMPADDPRDRSNLESVS  136 (176)
T ss_pred             ------CCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCC-CccccchhcHHHHHHHHHhccCCccccccHHHHH
Confidence                  257889988886533      2     888  888 554 4433222222111111111111     1112233


Q ss_pred             H--HHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          258 Q--AFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       258 ~--~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .  .+.+++.+||+.||++|| +.++++.+..+..
T Consensus       137 ~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~  171 (176)
T smart00750      137 AARSFADFMRVCASRLPQRREAANHYLAHCRALFA  171 (176)
T ss_pred             hhhhHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Confidence            3  699999999999999999 9999999877653

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.73  E-value=6.7e-17  Score=139.71  Aligned_cols=236  Identities=15%  Similarity=0.081  Sum_probs=157.1

Q ss_pred             ccCCCeeEeeecCCCCccCccC-CeEEEEEeecCCCcchHHHHHHHHHHHHhcCC----CCccceeeee-ecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQ-ERPVSVMKFDESKPRTYDCCINNIVYASQMIH----RCIFKLIGCC-LETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h----~niv~~~~~~-~~~~~~~lv~  111 (292)
                      +|+||.||.+....       + ...+|+|............+..|..++..+..    +++..+++.. ......++||
T Consensus        28 ~G~fG~V~~v~~~~-------~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM  100 (322)
T KOG1164|consen   28 EGGFGAVYLVSDKS-------EKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVM  100 (322)
T ss_pred             ccCCceEEEEEecC-------CCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEE
Confidence            89999999999862       2 35799999765433222367789999999863    5888888888 4677789999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC-----CceEEeec
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE-----NVAKLFDF  186 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~-----~~~kl~Df  186 (292)
                      +.+- .||.++.+.+     ....++..++++++.|++.+|.+||   +.+++||||||.|+++...     ..++|.||
T Consensus       101 ~l~G-~sL~dl~~~~-----~~~~fs~~T~l~ia~q~l~~l~~lH---~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDf  171 (322)
T KOG1164|consen  101 SLLG-PSLEDLRKRN-----PPGRFSRKTVLRIAIQNLNALEDLH---SKGFIHRDIKPENFVVGQSSRSEVRTLYLLDF  171 (322)
T ss_pred             eccC-ccHHHHHHhC-----CCCCcCHhHHHHHHHHHHHHHHHHH---hcCcccCCcCHHHeeecCCCCcccceEEEEec
Confidence            9986 6999988433     2578999999999999999999999   9999999999999999854     46999999


Q ss_pred             cccc--ccCCCCc----cc---hhhhhcccccccccccCCC-----------Ce-E-EEc-cc-hhhhhhccchhhhccc
Q 044211          187 SFSI--SIPEGET----HI---SELLSGLRAFDLARLNEDD-----------GY-V-VLL-DH-IKKYFEEDRLNEIIDP  242 (292)
Q Consensus       187 g~a~--~~~~~~~----~~---~~~~~g~~~y~~~~~~~~~-----------Gv-i-el~-~~-~~~~~~~~~~~~~~~~  242 (292)
                      |+++  .......    ..   .....||..|.+...-...           +- + +++ |. +|...........+..
T Consensus       172 Glar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~  251 (322)
T KOG1164|consen  172 GLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEK  251 (322)
T ss_pred             CCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHH
Confidence            9998  3322211    11   1235588988443322211           11 1 555 42 2212121111111111


Q ss_pred             ccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          243 LIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       243 ~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      ..............+..+.++...+-+.+...+| ...+...|++...
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~  299 (322)
T KOG1164|consen  252 DPRKLLTDRFGDLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKDVFD  299 (322)
T ss_pred             HhhhhccccccCCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHH
Confidence            1110000000013345666676777778999999 9999988877653

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.73  E-value=3.5e-17  Score=150.66  Aligned_cols=127  Identities=14%  Similarity=0.175  Sum_probs=104.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEee-cC-CCc------chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKF-DE-SKP------RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~-~~-~~~------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l  109 (292)
                      +|+||.||+|.+         .+..+++|.. .. ...      ....++.+|+.+++.++|++++....++......++
T Consensus       343 ~G~~g~Vy~~~~---------~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~l  413 (535)
T PRK09605        343 KGAEADIKKGEY---------LGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKTI  413 (535)
T ss_pred             cCCcEEEEEEee---------cCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCEE
Confidence            999999999998         4444555442 11 111      123568899999999999999888777777778899


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ||||+++++|.+++.               ....++.+++.+|.+||   +.+++|||+||+||++ .++.++|+|||++
T Consensus       414 v~E~~~g~~L~~~l~---------------~~~~~~~~i~~~L~~lH---~~giiHrDlkp~NILl-~~~~~~liDFGla  474 (535)
T PRK09605        414 VMEYIGGKDLKDVLE---------------GNPELVRKVGEIVAKLH---KAGIVHGDLTTSNFIV-RDDRLYLIDFGLG  474 (535)
T ss_pred             EEEecCCCcHHHHHH---------------HHHHHHHHHHHHHHHHH---hCCCccCCCChHHEEE-ECCcEEEEeCccc
Confidence            999999999999881               34678999999999999   8999999999999999 5779999999999


Q ss_pred             ccc
Q 044211          190 ISI  192 (292)
Q Consensus       190 ~~~  192 (292)
                      +..
T Consensus       475 ~~~  477 (535)
T PRK09605        475 KYS  477 (535)
T ss_pred             ccC
Confidence            764

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.72  E-value=6.5e-17  Score=130.12  Aligned_cols=129  Identities=15%  Similarity=0.145  Sum_probs=101.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc----------------------hHHHHHHHHHHHHhcCCCC--
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR----------------------TYDCCINNIVYASQMIHRC--   93 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~----------------------~~~~~~~e~~~l~~l~h~n--   93 (292)
                      +|+||.||++...        +++.||||++......                      ....+..|+..+..+.|++  
T Consensus        25 ~G~~g~Vy~~~~~--------~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   96 (198)
T cd05144          25 VGKESDVYLALDP--------DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFP   96 (198)
T ss_pred             cCcceEEEEEEcC--------CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCC
Confidence            8999999999986        8999999987543210                      0113567888999997774  


Q ss_pred             ccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044211           94 IFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNI  173 (292)
Q Consensus        94 iv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~ni  173 (292)
                      +..+++    ....++||||+++++|.....        .     .....++.+++.++.++|   ..+++|+||+|+||
T Consensus        97 v~~~~~----~~~~~lv~e~~~g~~L~~~~~--------~-----~~~~~~~~~i~~~l~~lh---~~gi~H~Dl~p~Ni  156 (198)
T cd05144          97 VPKPID----WNRHAVVMEYIDGVELYRVRV--------L-----EDPEEVLDEILEEIVKAY---KHGIIHGDLSEFNI  156 (198)
T ss_pred             CCceee----cCCceEEEEEeCCcchhhccc--------c-----ccHHHHHHHHHHHHHHHH---HCCCCcCCCCcccE
Confidence            444443    245689999999999876551        0     234678899999999999   89999999999999


Q ss_pred             EecCCCceEEeecccccccCC
Q 044211          174 LFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       174 li~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++++.++|+|||.+.....
T Consensus       157 ll~~~~~~~liDfg~~~~~~~  177 (198)
T cd05144         157 LVDDDEKIYIIDWPQMVSTDH  177 (198)
T ss_pred             EEcCCCcEEEEECCccccCCC
Confidence            999999999999999976644

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=9.9e-18  Score=154.36  Aligned_cols=194  Identities=15%  Similarity=0.168  Sum_probs=142.7

Q ss_pred             HHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 044211           79 CINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVG  158 (292)
Q Consensus        79 ~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~  158 (292)
                      +..|+.+-.++.|+|++..+..+.......-.||||++ +|..++       .....+....+-.++.|+..|+.|+|  
T Consensus       368 i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE~~~~-Dlf~~~-------~~~~~~~~~e~~c~fKqL~~Gv~y~h--  437 (601)
T KOG0590|consen  368 ITSEFCIGSSLSHPNIIETLDIVQEIDGILQSMEYCPY-DLFSLV-------MSNGKLTPLEADCFFKQLLRGVKYLH--  437 (601)
T ss_pred             hhhheeecccccCCchhhhHHHHhhcccchhhhhcccH-HHHHHH-------hcccccchhhhhHHHHHHHHHHHHHH--
Confidence            66788888889999998887777766666666999998 999999       23357888889999999999999999  


Q ss_pred             CCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc---cchhhhhcccccccccccCCC------------CeE--
Q 044211          159 FPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET---HISELLSGLRAFDLARLNEDD------------GYV--  221 (292)
Q Consensus       159 ~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~~g~~~y~~~~~~~~~------------Gvi--  221 (292)
                       ..++.|||+|++|++++.+|.+||+|||.+..+.-...   .......|...|.+||+....            |++  
T Consensus       438 -~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~  516 (601)
T KOG0590|consen  438 -SMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYI  516 (601)
T ss_pred             -hcCceeccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEE
Confidence             99999999999999999999999999999977653332   445567788899888877655            777  


Q ss_pred             EEc-cchhhhhhccchhhhcc-----cccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          222 VLL-DHIKKYFEEDRLNEIID-----PLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       222 el~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .|+ ++.+.-.....-....+     .......+.......+.....+|.++|+.||.+|. +.+|++.
T Consensus       517 ~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d  585 (601)
T KOG0590|consen  517 CMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILND  585 (601)
T ss_pred             EEecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhhC
Confidence            777 64321111111110001     00111111111135677888999999999999999 9998863

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.72  E-value=9.6e-18  Score=148.24  Aligned_cols=196  Identities=23%  Similarity=0.254  Sum_probs=136.8

Q ss_pred             HHhcCCCCccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q 044211           86 ASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIF  165 (292)
Q Consensus        86 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H  165 (292)
                      |+.+.|.|+.+++|.+......+.|.+||..|+|.+.+.      .....+++.....+..+++.||.|+|+.  .-..|
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~------~~~~~~d~~F~~s~~rdi~~Gl~ylh~s--~i~~h   72 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILS------NEDIKLDYFFILSFIRDISKGLAYLHNS--PIGYH   72 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHh------ccccCccHHHHHHHHHHHHHHHHHHhcC--cceee
Confidence            457889999999999999999999999999999999993      4567888999999999999999999953  22299


Q ss_pred             CCCCCCceEecCCCceEEeecccccccCC------CCccchhhhhccccccccc--------ccCCC-----CeE--EEc
Q 044211          166 RDFKLSNILFNEENVAKLFDFSFSISIPE------GETHISELLSGLRAFDLAR--------LNEDD-----GYV--VLL  224 (292)
Q Consensus       166 ~dlk~~nili~~~~~~kl~Dfg~a~~~~~------~~~~~~~~~~g~~~y~~~~--------~~~~~-----Gvi--el~  224 (292)
                      +.++++|.+++..+.+||+|||+......      .........+..+......        .+.+.     |++  |++
T Consensus        73 g~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~  152 (484)
T KOG1023|consen   73 GALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEIL  152 (484)
T ss_pred             eeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHH
Confidence            99999999999999999999999876632      0111111122222111110        12222     566  666


Q ss_pred             cchhhhhhccc---hhhhcccccccCCCCCCc-----hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          225 DHIKKYFEEDR---LNEIIDPLIMGDRSCSGN-----QQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       225 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+..++.....   ..+++.....+..++..|     .+.++.+..++..||..+|+.|| +.++-..++.+..
T Consensus       153 ~r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~  226 (484)
T KOG1023|consen  153 FRSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINK  226 (484)
T ss_pred             hccCccccccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccChhhCccHHHHHhhhhhhcc
Confidence            55544433211   123333322212221111     14556799999999999999999 9999988877654

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.69  E-value=2.6e-16  Score=129.84  Aligned_cols=154  Identities=20%  Similarity=0.227  Sum_probs=127.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||+++.|+.-       +++++||||.-...+  .+.++..|....+.|. .++|..++-+........+|+|..- 
T Consensus        38 eGsFG~lf~G~Nl-------~nne~VAIKfEPrkS--~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLLG-  107 (449)
T KOG1165|consen   38 EGSFGVLFLGKNL-------YNNEPVAIKFEPRKS--EAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLLG-  107 (449)
T ss_pred             cCcceeeeccccc-------ccCceEEEEeccccC--CcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhhC-
Confidence            8999999999974       399999999864432  3566888999999985 6899998877666667789999985 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC-----CceEEeecccccc
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE-----NVAKLFDFSFSIS  191 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~-----~~~kl~Dfg~a~~  191 (292)
                      .||+|++..+      +..++..+++.++.|+..-++|+|   .+.+|.|||||+|+||...     ..+.+.|||+|+.
T Consensus       108 PSLEDLFD~C------gR~FSvKTV~miA~Qmi~rie~vH---~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~  178 (449)
T KOG1165|consen  108 PSLEDLFDLC------GRRFSVKTVAMIAKQMITRIEYVH---EKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKE  178 (449)
T ss_pred             cCHHHHHHHh------cCcccHHhHHHHHHHHHHHHHHHH---hcceeecccCccceeecCCCCCCCceEEEEeccchhh
Confidence            6999999654      567999999999999999999999   9999999999999999633     4699999999998


Q ss_pred             cCCCCccc------hhhhhcccccc
Q 044211          192 IPEGETHI------SELLSGLRAFD  210 (292)
Q Consensus       192 ~~~~~~~~------~~~~~g~~~y~  210 (292)
                      .....+..      ..+..||.+||
T Consensus       179 YrDp~TkqHIPYrE~KSLsGTARYM  203 (449)
T KOG1165|consen  179 YRDPKTKQHIPYREHKSLSGTARYM  203 (449)
T ss_pred             hcCccccccCccccccccccceeee
Confidence            87654332      34677899884

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.69  E-value=6.1e-16  Score=127.65  Aligned_cols=145  Identities=14%  Similarity=0.086  Sum_probs=107.9

Q ss_pred             cccHHHHHHHhhC---ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-------------cchHHHHHHHHHHHHh
Q 044211           25 SFCAEELKTTHNA---IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-------------PRTYDCCINNIVYASQ   88 (292)
Q Consensus        25 ~~~~~~~~~~~~~---~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-------------~~~~~~~~~e~~~l~~   88 (292)
                      -|+.+.+......   .||.|+||.+..         .+..+++|.+....             .....++.+|+.++.+
T Consensus        26 ~~~~~~~~~~~~~lg~~~g~gtv~~v~~---------~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~   96 (239)
T PRK01723         26 LFDPDFWQQQARVVGSAKGRGTTWFVQT---------PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQ   96 (239)
T ss_pred             hcCHHHHhhcCceeecCCCCccEEEEEe---------CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHH
Confidence            4555444433221   799999999988         77889999874311             1223467889999999


Q ss_pred             cCCCCc--cceeeeeecCC----cceEEEeccCC-CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 044211           89 MIHRCI--FKLIGCCLETQ----IPILVFEYINC-GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR  161 (292)
Q Consensus        89 l~h~ni--v~~~~~~~~~~----~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~  161 (292)
                      |+|++|  +..+++.....    ..++|+|++++ .+|.+++.        ...++..    .+.+++.++.+||   ..
T Consensus        97 L~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~--------~~~l~~~----~~~~i~~~l~~lH---~~  161 (239)
T PRK01723         97 LYEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQ--------EAPLSEE----QWQAIGQLIARFH---DA  161 (239)
T ss_pred             HHhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHh--------cCCCCHH----HHHHHHHHHHHHH---HC
Confidence            998875  56666644322    23599999997 69998882        2234443    3568999999999   99


Q ss_pred             CcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          162 PVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       162 ~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +|+|+||||.|||++.++.++|+|||.+....
T Consensus       162 GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~~  193 (239)
T PRK01723        162 GVYHADLNAHNILLDPDGKFWLIDFDRGELRT  193 (239)
T ss_pred             CCCCCCCCchhEEEcCCCCEEEEECCCcccCC
Confidence            99999999999999998899999999987654

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.68  E-value=3.4e-16  Score=123.87  Aligned_cols=153  Identities=19%  Similarity=0.184  Sum_probs=122.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCC-CCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIH-RCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+||.+|.|....       +|..||||.-+....  ..++.-|..+.+.|++ ..|..+..+......-.+||+..- 
T Consensus        25 sGSFGdIy~~~~i~-------~ge~VAiK~Es~~a~--hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdLLG-   94 (341)
T KOG1163|consen   25 SGSFGDIYLGISIT-------SGEEVAIKLESSKAK--HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDLLG-   94 (341)
T ss_pred             CCchhheeeeeecc-------CCceEEEEeecccCC--CcchhHHHHHHHHhccCCCCchhhhhccccccceeeeeccC-
Confidence            89999999999876       999999999654421  2347789999999976 567777777777778899999985 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC---CCceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE---ENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~---~~~~kl~Dfg~a~~~~  193 (292)
                      .||++++.-+      ...++..+++.++.|++.-+.|+|   .++++||||||+|+|..-   ...+.+.|||+|+.+.
T Consensus        95 PsLEdLfnfC------~R~ftmkTvLMLaDQml~RiEyvH---~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~  165 (341)
T KOG1163|consen   95 PSLEDLFNFC------SRRFTMKTVLMLADQMLSRIEYVH---LRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYR  165 (341)
T ss_pred             ccHHHHHHHH------hhhhhHHhHHHHHHHHHHHHHHHH---hhccccccCCccceeeccccccceEEEEeccchhhhc
Confidence            6999998432      456888899999999999999999   899999999999999963   3579999999998775


Q ss_pred             CCCcc------chhhhhccccc
Q 044211          194 EGETH------ISELLSGLRAF  209 (292)
Q Consensus       194 ~~~~~------~~~~~~g~~~y  209 (292)
                      +..+.      ......||.+|
T Consensus       166 d~~t~~HIpyre~r~ltGTaRY  187 (341)
T KOG1163|consen  166 DIRTRQHIPYREDRNLTGTARY  187 (341)
T ss_pred             cccccccCccccCCccceeeee
Confidence            43221      12346688888

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.67  E-value=8.5e-16  Score=131.98  Aligned_cols=227  Identities=20%  Similarity=0.260  Sum_probs=163.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc---hHHHHHHHHHHHHhcCCC-CccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR---TYDCCINNIVYASQMIHR-CIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~e~~~l~~l~h~-niv~~~~~~~~~~~~~lv~e~  113 (292)
                      .|+|+.||.+.+         . ..+++|.+......   ....+.+|...+..+.|+ +++++.+.+......++++++
T Consensus        10 ~g~~~~v~~~~~---------~-~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515          10 EGSFGEVYLARD---------R-KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             CCCCeEEEEEEe---------c-cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            689999999999         4 78999998764332   367799999999999988 799999999777778999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC-ceEEeeccccccc
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFSISI  192 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~-~~kl~Dfg~a~~~  192 (292)
                      +.++++.+++......    ..++......++.|++.++.|+|   ..+++|||+||+||+++..+ .++++|||.+...
T Consensus        80 ~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~H---~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~  152 (384)
T COG0515          80 VDGGSLEDLLKKIGRK----GPLSESEALFILAQILSALEYLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLL  152 (384)
T ss_pred             CCCCcHHHHHHhcccc----cCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeecCCCCeEEEeccCcceec
Confidence            9999999777321100    37899999999999999999999   88999999999999999888 7999999999866


Q ss_pred             CCCCcc-----chhhhhcccccccccccCC---C-----------CeE--EEc-cchhhhhhccc---hhhhcccccccC
Q 044211          193 PEGETH-----ISELLSGLRAFDLARLNED---D-----------GYV--VLL-DHIKKYFEEDR---LNEIIDPLIMGD  247 (292)
Q Consensus       193 ~~~~~~-----~~~~~~g~~~y~~~~~~~~---~-----------Gvi--el~-~~~~~~~~~~~---~~~~~~~~~~~~  247 (292)
                      ......     ......|+..|.+++....   .           |++  +++ +..+ +.....   ............
T Consensus       153 ~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~  231 (384)
T COG0515         153 PDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPP-FEGEKNSSATSQTLKIILELP  231 (384)
T ss_pred             CCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCC-CCCCCccccHHHHHHHHHhcC
Confidence            544322     2356778889977775543   1           544  444 4332 211111   111111111111


Q ss_pred             CC---CCCchH----HHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          248 RS---CSGNQQ----QLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       248 ~~---~~~~~~----~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+   ......    ....+.+++..|+..+|..|. ..+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  274 (384)
T COG0515         232 TPSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLS  274 (384)
T ss_pred             CcccccccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhh
Confidence            11   011011    135788999999999999999 766554

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.66  E-value=1.3e-15  Score=121.46  Aligned_cols=132  Identities=16%  Similarity=0.216  Sum_probs=95.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcch--HHHH----------------------HHHHHHHHhcCCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRT--YDCC----------------------INNIVYASQMIHRC   93 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~--~~~~----------------------~~e~~~l~~l~h~n   93 (292)
                      +|+||.||+|...        +++.||||.+.......  ...+                      ..|...+.++.+..
T Consensus         7 ~G~~g~Vy~a~~~--------~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~   78 (187)
T cd05119           7 TGKEADVYLALDG--------DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAG   78 (187)
T ss_pred             cccceeEEEEECC--------CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcC
Confidence            7999999999985        79999999986532211  1111                      35666666664432


Q ss_pred             --ccceeeeeecCCcceEEEeccCCCChhH-HhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCcccCCCC
Q 044211           94 --IFKLIGCCLETQIPILVFEYINCGSLAD-RIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP-RPVIFRDFK  169 (292)
Q Consensus        94 --iv~~~~~~~~~~~~~lv~e~~~~gsL~~-~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-~~i~H~dlk  169 (292)
                        +.+.+++    ...++||||++++++.. .+.        ..... .....++.+++.++.++|   . .+++|+||+
T Consensus        79 ~~~~~~~~~----~~~~lv~e~~~g~~~~~~~l~--------~~~~~-~~~~~~~~~~~~~l~~lh---~~~~ivH~Dl~  142 (187)
T cd05119          79 VPVPKPIDL----NRHVLVMEFIGGDGIPAPRLK--------DVRLL-EDPEELYDQILELMRKLY---REAGLVHGDLS  142 (187)
T ss_pred             CCCCceEec----CCCEEEEEEeCCCCccChhhh--------hhhhc-ccHHHHHHHHHHHHHHHh---hccCcCcCCCC
Confidence              4444443    24689999999855432 121        00011 567889999999999999   7 999999999


Q ss_pred             CCceEecCCCceEEeecccccccCC
Q 044211          170 LSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       170 ~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      |+||+++ ++.++|+|||.+.....
T Consensus       143 p~Nili~-~~~~~liDfg~a~~~~~  166 (187)
T cd05119         143 EYNILVD-DGKVYIIDVPQAVEIDH  166 (187)
T ss_pred             hhhEEEE-CCcEEEEECcccccccC
Confidence            9999999 88999999999976654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.65  E-value=3e-16  Score=132.47  Aligned_cols=174  Identities=14%  Similarity=0.195  Sum_probs=121.1

Q ss_pred             CCCCccceeeeeecC---------------------------CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHH
Q 044211           90 IHRCIFKLIGCCLET---------------------------QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL  142 (292)
Q Consensus        90 ~h~niv~~~~~~~~~---------------------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~  142 (292)
                      .|||||++.++|.+.                           ..+|+||.-+++ +|.+++.        ....+.....
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~--------~~~~s~r~~~  344 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLW--------TRHRSYRTGR  344 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHh--------cCCCchHHHH
Confidence            599999999988642                           235899999986 9999993        3446667778


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec--CC--CceEEeecccccccCCCCccc-----hhhhhccccccccc
Q 044211          143 KIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN--EE--NVAKLFDFSFSISIPEGETHI-----SELLSGLRAFDLAR  213 (292)
Q Consensus       143 ~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~--~~--~~~kl~Dfg~a~~~~~~~~~~-----~~~~~g~~~y~~~~  213 (292)
                      -|+.|+++|+.|||   ++++.|||+|.+|||+.  ++  ..++++|||.+---++.....     .-...|.-..++||
T Consensus       345 ~~laQlLEav~hL~---~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPE  421 (598)
T KOG4158|consen  345 VILAQLLEAVTHLH---KHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPE  421 (598)
T ss_pred             HHHHHHHHHHHHHH---HccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchh
Confidence            89999999999999   99999999999999995  33  358999999874322211100     11122222335555


Q ss_pred             ccCCC-----------------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCC
Q 044211          214 LNEDD-----------------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVD  274 (292)
Q Consensus       214 ~~~~~-----------------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~  274 (292)
                      +....                 |.+  |++|...||+..+...-.... ..+..-+..++.+++.+.+++...|+.||++
T Consensus       422 i~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~-Yqe~qLPalp~~vpp~~rqlV~~lL~r~psk  500 (598)
T KOG4158|consen  422 IATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRT-YQESQLPALPSRVPPVARQLVFDLLKRDPSK  500 (598)
T ss_pred             hhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhh-hhhhhCCCCcccCChHHHHHHHHHhcCCccc
Confidence            54432                 666  888888899885543211111 1111112223588999999999999999999


Q ss_pred             CC
Q 044211          275 RP  276 (292)
Q Consensus       275 RP  276 (292)
                      ||
T Consensus       501 Rv  502 (598)
T KOG4158|consen  501 RV  502 (598)
T ss_pred             cC
Confidence            99

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.65  E-value=2.3e-15  Score=115.19  Aligned_cols=130  Identities=13%  Similarity=0.069  Sum_probs=107.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCC--CCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIH--RCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|.++.||++..         ++..+++|.......  ...+..|+..+..+++  .++.+++++....+..++++||+.
T Consensus         8 ~g~~~~v~~~~~---------~~~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~   76 (155)
T cd05120           8 GGLTNRVYLLGT---------KDEDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIE   76 (155)
T ss_pred             cccccceEEEEe---------cCCeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecC
Confidence            789999999998         558899999866533  4568899999999976  588899988887788999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      ++++..+              +......++.+++.++.++|.....+++|+|++|.||++++++.+++.|||.+...
T Consensus        77 g~~~~~~--------------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          77 GETLDEV--------------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             CeecccC--------------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence            8666321              44566778999999999999432257999999999999999899999999998643

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=1.9e-15  Score=142.74  Aligned_cols=134  Identities=18%  Similarity=0.196  Sum_probs=110.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC---CCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI---HRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|...        +++.||+|.-+......   |.--.+++.+|+   -+.|..+..++...+..++|+||.
T Consensus       708 ~g~y~~vy~a~~~--------~~~~~alK~e~P~~~WE---fYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~  776 (974)
T KOG1166|consen  708 EGSYGSVYVATHS--------NGKLVALKVEKPPNPWE---FYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYS  776 (974)
T ss_pred             cccceEEEEeecC--------CCcEEEEEeecCCCcee---eeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeecc
Confidence            9999999999998        89999999987664432   222233344443   356677777777788899999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec-------CCCceEEeecc
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN-------EENVAKLFDFS  187 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~-------~~~~~kl~Dfg  187 (292)
                      +.|||.+++       +.....++..++.++.|++.-+.+||   ..+|||+||||+|+||.       .+..++|+|||
T Consensus       777 ~~Gtlld~~-------N~~~~m~e~lv~~~~~qml~ive~lH---~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG  846 (974)
T KOG1166|consen  777 PYGTLLDLI-------NTNKVMDEYLVMFFSCQMLRIVEHLH---AMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFG  846 (974)
T ss_pred             ccccHHHhh-------ccCCCCCchhhhHHHHHHHHHHHHHH---hcceecccCCcceeEeecccCCCCcccceEEEecc
Confidence            999999999       46778999999999999999999999   99999999999999994       23469999999


Q ss_pred             ccccc
Q 044211          188 FSISI  192 (292)
Q Consensus       188 ~a~~~  192 (292)
                      .|..+
T Consensus       847 ~siDm  851 (974)
T KOG1166|consen  847 RSIDM  851 (974)
T ss_pred             cceee
Confidence            99755

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=1.1e-14  Score=125.74  Aligned_cols=124  Identities=19%  Similarity=0.280  Sum_probs=104.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-----C---CCccceeeeeec----CC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-----H---RCIFKLIGCCLE----TQ  105 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-----h---~niv~~~~~~~~----~~  105 (292)
                      -|-|++||++++..       +.+.||+|+.+... ...+..+.|+.+|++++     |   .+||++++.|.-    ..
T Consensus        88 WGHFSTVWLawDtq-------~~r~VAlKVvKSAq-hYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~  159 (590)
T KOG1290|consen   88 WGHFSTVWLAWDTQ-------NKRYVALKVVKSAQ-HYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQ  159 (590)
T ss_pred             ccccceeEEEeecc-------CCeEEEEEEEehhh-HHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCc
Confidence            68899999999986       88899999988763 34566889999999984     3   369999999974    34


Q ss_pred             cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC
Q 044211          106 IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE  177 (292)
Q Consensus       106 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~  177 (292)
                      ..+||+|+.-. +|..+|+..     ....++...+..|+.||+.||-|||.  ..+|||-||||+|||+..
T Consensus       160 HVCMVfEvLGd-nLLklI~~s-----~YrGlpl~~VK~I~~qvL~GLdYLH~--ecgIIHTDlKPENvLl~~  223 (590)
T KOG1290|consen  160 HVCMVFEVLGD-NLLKLIKYS-----NYRGLPLSCVKEICRQVLTGLDYLHR--ECGIIHTDLKPENVLLCS  223 (590)
T ss_pred             EEEEEehhhhh-HHHHHHHHh-----CCCCCcHHHHHHHHHHHHHHHHHHHH--hcCccccCCCcceeeeec
Confidence            68999999975 999999533     45678899999999999999999997  569999999999999943

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.56  E-value=1.2e-14  Score=129.99  Aligned_cols=137  Identities=15%  Similarity=0.118  Sum_probs=95.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHH----------------------------------------
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYD----------------------------------------   77 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~----------------------------------------   77 (292)
                      .|++|.||+|++.        +|+.||||+.++.......                                        
T Consensus       127 saSigQVh~A~l~--------~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  198 (437)
T TIGR01982       127 AASIAQVHRARLV--------DGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRREL  198 (437)
T ss_pred             eeehhheEEEEec--------CCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHH
Confidence            7999999999997        9999999998654211100                                        


Q ss_pred             HHHHHHHHHHhcC----CCCccceeeeee-cCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHH-H
Q 044211           78 CCINNIVYASQMI----HRCIFKLIGCCL-ETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN-A  151 (292)
Q Consensus        78 ~~~~e~~~l~~l~----h~niv~~~~~~~-~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~-~  151 (292)
                      .|.+|...+.+++    +.+-+.+-.++. .....++||||++|++|.++....      ....+   ...++..++. .
T Consensus       199 df~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~------~~~~~---~~~ia~~~~~~~  269 (437)
T TIGR01982       199 DLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALD------EAGLD---RKALAENLARSF  269 (437)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHH------hcCCC---HHHHHHHHHHHH
Confidence            1344555555552    333333333332 244578999999999998877311      11122   2345555555 4


Q ss_pred             HHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          152 IAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       152 l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +..+|   ..+++|+|++|.||+++.++.+++.|||++..+..
T Consensus       270 l~ql~---~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       270 LNQVL---RDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             HHHHH---hCCceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            67889   89999999999999999999999999999987753

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.53  E-value=1.7e-15  Score=134.68  Aligned_cols=213  Identities=15%  Similarity=0.152  Sum_probs=163.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|.||.|+.+.-.    .+--.++-+|+|.++....  ........|-.++..++ ||.+++++-.+..+...+++++|.
T Consensus         4 ~g~~gkvfLvrk~----~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~   79 (612)
T KOG0603|consen    4 QGSYGKVFLVRKA----GGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFL   79 (612)
T ss_pred             cCCCcchHHHHHh----ccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhc
Confidence            6888888876421    0111667788888764311  11124456777888886 999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+|.|...+       .....+.+.....+...++-|+.++|   +.+++++|+|++||+++.+|.+++.|||+++..-.
T Consensus        80 rgg~lft~l-------~~~~~f~~~~~~~~~aelaLald~lh---~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~  149 (612)
T KOG0603|consen   80 RGGDLFTRL-------SKEVMFDELDVAFYLAELALALDHLH---KLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVK  149 (612)
T ss_pred             ccchhhhcc-------ccCCchHHHHHHHHHHHHHHHHhhcc---hhHHHHhcccccceeecccCccccCCchhhhHhHh
Confidence            999998777       45667888888888999999999999   99999999999999999999999999999987754


Q ss_pred             CCccchhhhhcccccccccccCCC---------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD---------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~---------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      ...     .+||..|+++++..-.         |++  ||+....|+..     +.+..++......+.  .......++
T Consensus       150 ~~~-----~cgt~eymApEI~~gh~~a~D~ws~gvl~felltg~~pf~~-----~~~~~Il~~~~~~p~--~l~~~a~~~  217 (612)
T KOG0603|consen  150 EKI-----ACGTYEYRAPEIINGHLSAADWWSFGVLAFELLTGTLPFGG-----DTMKRILKAELEMPR--ELSAEARSL  217 (612)
T ss_pred             hhh-----cccchhhhhhHhhhccCCcccchhhhhhHHHHhhCCCCCch-----HHHHHHhhhccCCch--hhhHHHHHH
Confidence            332     2899999999888711         888  88843444433     333333443444443  778889999


Q ss_pred             HhHhcCCCCCCCC
Q 044211          264 IFECVNESPVDRP  276 (292)
Q Consensus       264 i~~Cl~~dP~~RP  276 (292)
                      +......+|..|-
T Consensus       218 ~~~l~~r~p~nrL  230 (612)
T KOG0603|consen  218 FRQLFKRNPENRL  230 (612)
T ss_pred             HHHHHhhCHHHHh
Confidence            9999999999998

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.51  E-value=4.2e-15  Score=139.15  Aligned_cols=132  Identities=21%  Similarity=0.175  Sum_probs=108.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHH---HHHHHHHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCC---INNIVYASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~---~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      .+.|=.|.+|+++        .|. |+||.+-..+ .-..+.+   +.|++ ...+++||.+++.-+-......|+|-+|
T Consensus        33 stRFlKv~r~k~~--------eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   33 STRFLKVARAKDR--------EGL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             chhhhhhhhccCC--------Cce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            7889999999996        666 9999974432 3233334   44444 5556899999998887777778899999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      ..+ +|.|.+       ..++-+...+..-|+-|+++|+..+|   ..+|.|||||.+||||+.=+-+.|+||..-+
T Consensus       103 vkh-nLyDRl-------STRPFL~~iEKkWiaFQLL~al~qcH---~~gVcHGDIKsENILiTSWNW~~LtDFAsFK  168 (1431)
T KOG1240|consen  103 VKH-NLYDRL-------STRPFLVLIEKKWIAFQLLKALSQCH---KLGVCHGDIKSENILITSWNWLYLTDFASFK  168 (1431)
T ss_pred             Hhh-hhhhhh-------ccchHHHHHHHHHHHHHHHHHHHHHH---HcCccccccccceEEEeeechhhhhcccccC
Confidence            987 999999       46777888888889999999999999   9999999999999999999999999997643

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.46  E-value=8.8e-14  Score=116.02  Aligned_cols=216  Identities=16%  Similarity=0.110  Sum_probs=120.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCC----------CCccceeeeee--
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIH----------RCIFKLIGCCL--  102 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h----------~niv~~~~~~~--  102 (292)
                      .|+++.||.+++..       +++++|+|.+...   .....+.+.+|.-....+.+          -.++--++...  
T Consensus        22 ~g~~~~v~~v~d~~-------t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i~   94 (288)
T PF14531_consen   22 KGGFSIVFEVTDVE-------TGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRIP   94 (288)
T ss_dssp             EETTEEEEEEEETT-------TTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEET
T ss_pred             cCCceEEEEEEEcc-------CCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEEc
Confidence            89999999999976       8999999997432   22345667777655555322          11111111111  


Q ss_pred             -------cC---C-----cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044211          103 -------ET---Q-----IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRD  167 (292)
Q Consensus       103 -------~~---~-----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~d  167 (292)
                             ..   .     +.+++|+-+. ++|.+++......+.....+.....+.+..|+++.+++||   ..+++|+|
T Consensus        95 ~~~~~~~~~~~~~~~~v~n~~~l~P~~~-~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh---~~GlVHgd  170 (288)
T PF14531_consen   95 GKPPFFERGPGQSIYWVLNRFLLMPRAQ-GDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLH---SYGLVHGD  170 (288)
T ss_dssp             TS-SEEEECETTEEEEEESEEEEEE--S-EEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEEEST
T ss_pred             CCCcceecCCCCccceeehhhhccchhh-hcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHh---hcceEecc
Confidence                   11   1     2356777776 5999887543322222233444455677789999999999   89999999


Q ss_pred             CCCCceEecCCCceEEeecccccccCCCCccchhhhhcccccccccccCC--------------C-----CeE--EEccc
Q 044211          168 FKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNED--------------D-----GYV--VLLDH  226 (292)
Q Consensus       168 lk~~nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~--------------~-----Gvi--el~~~  226 (292)
                      |+|+|++++.+|.++|+||+..........  .  ...+..|.+|+....              .     |++  .|...
T Consensus       171 i~~~nfll~~~G~v~Lg~F~~~~r~g~~~~--~--~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~  246 (288)
T PF14531_consen  171 IKPENFLLDQDGGVFLGDFSSLVRAGTRYR--C--SEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCG  246 (288)
T ss_dssp             -SGGGEEE-TTS-EEE--GGGEEETTEEEE--G--GGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHS
T ss_pred             cceeeEEEcCCCCEEEcChHHHeecCceee--c--cCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHc
Confidence            999999999999999999987654432111  1  122234433332211              1     666  44433


Q ss_pred             hhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCC
Q 044211          227 IKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDR  275 (292)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~R  275 (292)
                      ..|+..... ....+..+..-      .+.+..+..||...|+.||.+|
T Consensus       247 ~lPf~~~~~-~~~~~~~f~~C------~~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  247 RLPFGLSSP-EADPEWDFSRC------RDMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             S-STCCCGG-GSTSGGGGTTS------S---HHHHHHHHHHT-SSGGGS
T ss_pred             cCCCCCCCc-cccccccchhc------CCcCHHHHHHHHHHccCCcccC
Confidence            333322111 11011111111      1567789999999999999988

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.40  E-value=2.9e-12  Score=100.32  Aligned_cols=123  Identities=17%  Similarity=0.089  Sum_probs=91.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCcc-ceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIF-KLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv-~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|.++.||++..         .+..|++|....... ....+..|...++.+.+.+++ +++.+.  ....++||||+++
T Consensus         8 ~G~~~~vy~~~~---------~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G   75 (170)
T cd05151           8 GGMTNKNYRVEV---------ANKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEG   75 (170)
T ss_pred             CcccCceEEEEE---------CCeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCC
Confidence            677899999997         788899999765422 123457899999988655544 555443  2345899999998


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-----cccCCCCCCceEecCCCceEEeecccccc
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP-----VIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~-----i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      .++...-            .   ....++.+++.+|+.||   ..+     ++|+|++|.||+++ ++.+++.||+.+..
T Consensus        76 ~~l~~~~------------~---~~~~~~~~l~~~l~~LH---~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          76 SELLTED------------F---SDPENLEKIAKLLKKLH---SSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             Ccccccc------------c---cCHHHHHHHHHHHHHHh---CCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            7764321            1   11245678999999999   666     59999999999999 66899999999864

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.38  E-value=1.7e-12  Score=117.78  Aligned_cols=139  Identities=12%  Similarity=0.049  Sum_probs=89.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc----------------------------------hHHH-----
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR----------------------------------TYDC-----   78 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~----------------------------------~~~~-----   78 (292)
                      .|++|+||+|++..       +|+.||||+.++.-..                                  ..+.     
T Consensus       129 saSiaQVh~A~l~~-------~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~El  201 (537)
T PRK04750        129 SASIAQVHFARLKD-------NGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDEL  201 (537)
T ss_pred             CCCccEEEEEEECC-------CCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHhh
Confidence            89999999999972       4999999998754110                                  0111     


Q ss_pred             -HHHHHHHHHhcC----CCCccceeeeeec-CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 044211           79 -CINNIVYASQMI----HRCIFKLIGCCLE-TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAI  152 (292)
Q Consensus        79 -~~~e~~~l~~l~----h~niv~~~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l  152 (292)
                       +.+|...+.+++    +.+.+.+-.++.+ ....++||||++|+++.++-.-.. .......+.+..+..++.|     
T Consensus       202 D~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~-~g~d~~~la~~~v~~~~~Q-----  275 (537)
T PRK04750        202 DLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRA-AGTDMKLLAERGVEVFFTQ-----  275 (537)
T ss_pred             CHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHh-cCCCHHHHHHHHHHHHHHH-----
Confidence             334444444442    3444444444432 456789999999999987531000 0001112333333333333     


Q ss_pred             HHhhcCCCCCcccCCCCCCceEecCCC----ceEEeecccccccCC
Q 044211          153 AYLHVGFPRPVIFRDFKLSNILFNEEN----VAKLFDFSFSISIPE  194 (292)
Q Consensus       153 ~~lh~~~~~~i~H~dlk~~nili~~~~----~~kl~Dfg~a~~~~~  194 (292)
                        +.   ..+++|+|++|.||+++.++    .+++.|||+...+..
T Consensus       276 --if---~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        276 --VF---RDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             --HH---hCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence              34   57899999999999999888    999999999987753

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.31  E-value=1.5e-12  Score=107.85  Aligned_cols=102  Identities=20%  Similarity=0.308  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhcCCCCccceeeeeecCC-----cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 044211           79 CINNIVYASQMIHRCIFKLIGCCLETQ-----IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIA  153 (292)
Q Consensus        79 ~~~e~~~l~~l~h~niv~~~~~~~~~~-----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~  153 (292)
                      ...-++.|-.+-|.|||+++.+|.+..     +..++.||+..|++.+++++...   ....+......+|+-||.+||.
T Consensus       114 ~~~vFdnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~---~~~a~~~~~wkkw~tqIlsal~  190 (458)
T KOG1266|consen  114 RRAVFDNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKK---NQKALFQKAWKKWCTQILSALS  190 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHH---hhhhhhHHHHHHHHHHHHhhhh
Confidence            344455566678999999999997643     46899999999999999987654   4567888888999999999999


Q ss_pred             HhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          154 YLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       154 ~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                      |||.. ..+++|+++.++.|++..+|-+|+.
T Consensus       191 yLhs~-~PpiihgnlTc~tifiq~ngLIkig  220 (458)
T KOG1266|consen  191 YLHSC-DPPIIHGNLTCDTIFIQHNGLIKIG  220 (458)
T ss_pred             hhhcc-CCccccCCcchhheeecCCceEEec
Confidence            99965 7899999999999999999888865

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.26  E-value=1.6e-10  Score=91.68  Aligned_cols=140  Identities=9%  Similarity=0.076  Sum_probs=94.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-------------C---------cchHHHHH----HHHHHHHhcCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-------------K---------PRTYDCCI----NNIVYASQMIH   91 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-------------~---------~~~~~~~~----~e~~~l~~l~h   91 (292)
                      .|-=+.||.|.-..- ......+..+|||+.+..             +         ......+.    +|+..|+++..
T Consensus         7 ~GKEa~V~~~~~~~~-~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~rl~~   85 (197)
T cd05146           7 TGKESVVLHANGGSN-ETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKRMQK   85 (197)
T ss_pred             cCcceEEEEEecCcc-cccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            455578888875310 000112478999986421             0         00111223    79999999853


Q ss_pred             --CCccceeeeeecCCcceEEEeccCCCChhH-HhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHh-hcCCCCCcccCC
Q 044211           92 --RCIFKLIGCCLETQIPILVFEYINCGSLAD-RIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYL-HVGFPRPVIFRD  167 (292)
Q Consensus        92 --~niv~~~~~~~~~~~~~lv~e~~~~gsL~~-~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~l-h~~~~~~i~H~d  167 (292)
                        -++..++++    ...++||||+.+..+.. .+        ....++......+..+++.+|..+ |   ..+++|+|
T Consensus        86 ~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~L--------kd~~~~~~~~~~i~~~i~~~l~~l~H---~~glVHGD  150 (197)
T cd05146          86 AGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKL--------KDAKLNDEEMKNAYYQVLSMMKQLYK---ECNLVHAD  150 (197)
T ss_pred             cCCCCCeEEEe----cCCEEEEEEcCCCCccchhh--------hccccCHHHHHHHHHHHHHHHHHHHH---hCCeecCC
Confidence              456666654    46789999998644421 22        122355566777889999999998 8   88999999


Q ss_pred             CCCCceEecCCCceEEeecccccccCC
Q 044211          168 FKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       168 lk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      |++.||++++ +.++|.|||.+.....
T Consensus       151 Ls~~NIL~~~-~~v~iIDF~qav~~~h  176 (197)
T cd05146         151 LSEYNMLWHD-GKVWFIDVSQSVEPTH  176 (197)
T ss_pred             CCHHHEEEEC-CcEEEEECCCceeCCC
Confidence            9999999974 6899999999987653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.23  E-value=2e-10  Score=88.47  Aligned_cols=128  Identities=16%  Similarity=0.206  Sum_probs=94.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEee-cCC-C-cch-----HHHHHHHHHHHHhcCCCCccceeeeeecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKF-DES-K-PRT-----YDCCINNIVYASQMIHRCIFKLIGCCLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~-~~~-~-~~~-----~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l  109 (292)
                      +|+=+.|+.+.|         -|.++++|.- .+. . +..     ..+..+|+.++.++.--.|....=+..+++...+
T Consensus         6 ~GAEa~i~~~~~---------~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I   76 (204)
T COG3642           6 QGAEAIIYLTDF---------LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLI   76 (204)
T ss_pred             CCcceeEEeeec---------cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEE
Confidence            677788999877         6666888873 221 1 111     1356789999999865555444444556677789


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      +|||.+|..|.+.+.       ..       ...++..+-.-+.-||   ..+|+|+||.++||.+..++ +.+.|||++
T Consensus        77 ~me~I~G~~lkd~l~-------~~-------~~~~~r~vG~~vg~lH---~~givHGDLTtsNiIl~~~~-i~~IDfGLg  138 (204)
T COG3642          77 VMEYIEGELLKDALE-------EA-------RPDLLREVGRLVGKLH---KAGIVHGDLTTSNIILSGGR-IYFIDFGLG  138 (204)
T ss_pred             EEEEeCChhHHHHHH-------hc-------chHHHHHHHHHHHHHH---hcCeecCCCccceEEEeCCc-EEEEECCcc
Confidence            999999999998982       11       1456667777788899   99999999999999998874 999999998


Q ss_pred             ccc
Q 044211          190 ISI  192 (292)
Q Consensus       190 ~~~  192 (292)
                      ..-
T Consensus       139 ~~s  141 (204)
T COG3642         139 EFS  141 (204)
T ss_pred             ccc
Confidence            743

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.19  E-value=6e-10  Score=85.62  Aligned_cols=138  Identities=17%  Similarity=0.118  Sum_probs=100.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEee-cC-CCc------chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKF-DE-SKP------RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~-~~-~~~------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l  109 (292)
                      +|+=+.|+++.+         .|+...||.- .+ -..      -...+..+|...|.++.--.|.-..-++.+...-.+
T Consensus        17 QGAEArv~~~~~---------~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i   87 (229)
T KOG3087|consen   17 QGAEARVPRGSF---------SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQI   87 (229)
T ss_pred             ccceeeEeeecc---------CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeE
Confidence            888899999999         8999999973 21 111      122467889999999865555443334556666779


Q ss_pred             EEeccCC-CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc---eEEee
Q 044211          110 VFEYINC-GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV---AKLFD  185 (292)
Q Consensus       110 v~e~~~~-gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~---~kl~D  185 (292)
                      .|||.++ .++.+++..+-.    . .........++..|-..+.-||   ...++|+||..+||++..++.   +.+.|
T Consensus        88 ~ME~~~g~~~vk~~i~~~~~----~-~~~d~~~~~~~~~iG~~igklH---~ndiiHGDLTTSNill~~~~~~~~~~lId  159 (229)
T KOG3087|consen   88 YMEFIDGASTVKDFILSTME----D-ESEDEGLAELARRIGELIGKLH---DNDIIHGDLTTSNILLRSDGNQITPILID  159 (229)
T ss_pred             EEEeccchhHHHHHHHHHcc----C-cccchhHHHHHHHHHHHHHHhh---hCCeecccccccceEEecCCCcCceEEEe
Confidence            9999985 488888854422    1 1222233677888888899999   999999999999999986653   58999


Q ss_pred             ccccccc
Q 044211          186 FSFSISI  192 (292)
Q Consensus       186 fg~a~~~  192 (292)
                      ||++..-
T Consensus       160 fgls~~s  166 (229)
T KOG3087|consen  160 FGLSSVS  166 (229)
T ss_pred             ecchhcc
Confidence            9998543

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.18  E-value=4.1e-10  Score=91.94  Aligned_cols=138  Identities=17%  Similarity=0.207  Sum_probs=103.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCC--CCccceeeeeecC---CcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIH--RCIFKLIGCCLET---QIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h--~niv~~~~~~~~~---~~~~lv~  111 (292)
                      .|.++.||++...        +|+.+++|....... .....+..|..++..+.+  .++.+++.+....   +..++||
T Consensus         8 ~G~~n~~~~v~~~--------~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~   79 (223)
T cd05154           8 GGQSNLTYLLTAG--------GGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVM   79 (223)
T ss_pred             CCccceEEEEEec--------CCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEE
Confidence            6889999999885        568999999765422 234568899999999975  3457777777654   2568999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--------------------------------
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF--------------------------------  159 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--------------------------------  159 (292)
                      ||+++.++.+.+.        ...++......++.+++.+|..||...                                
T Consensus        80 e~i~G~~l~~~~~--------~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (223)
T cd05154          80 ERVDGRVLRDRLL--------RPELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRT  151 (223)
T ss_pred             EEeCCEecCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcc
Confidence            9999988876551        134666677777777888887777320                                


Q ss_pred             ---------------------CCCcccCCCCCCceEecC--CCceEEeecccccc
Q 044211          160 ---------------------PRPVIFRDFKLSNILFNE--ENVAKLFDFSFSIS  191 (292)
Q Consensus       160 ---------------------~~~i~H~dlk~~nili~~--~~~~kl~Dfg~a~~  191 (292)
                                           ...++|+|+.|.||+++.  ++.+.|.||+.+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         152 DEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             cccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                                 235689999999999998  66789999988753

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=7.9e-12  Score=115.58  Aligned_cols=229  Identities=16%  Similarity=0.168  Sum_probs=160.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|.|+.|-......      .....+|.|.+....  .........|..+-..+. |.|++.+++........++.++|.
T Consensus        30 ~gs~~~~~~~~~~~------~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~~~s  103 (601)
T KOG0590|consen   30 KGSFSSSALASNSR------DPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSLSYS  103 (601)
T ss_pred             ccccchhhhhhhcC------CCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCcccccccCcc
Confidence            78888888777631      044456777765442  334455566777777786 999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC-ceEEeecccccccC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFSISIP  193 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~-~~kl~Dfg~a~~~~  193 (292)
                      .++++.+.+.     .......+....-+++.|+..++.|+|.  ..++.|+|++|+|.+++.++ ..+++|||+|..+.
T Consensus       104 ~g~~~f~~i~-----~~~~~~~~~~~~~~~~~ql~s~l~~~H~--~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~  176 (601)
T KOG0590|consen  104 DGGSLFSKIS-----HPDSTGTSSSSASRYLPQLNSGLSYLHP--ENGVTHRDIKPSNSLLDESGSALKIADFGLATAYR  176 (601)
T ss_pred             cccccccccc-----cCCccCCCCcchhhhhhhhccCccccCc--ccccccCCCCCccchhccCCCcccCCCchhhcccc
Confidence            9999988872     1122255666778899999999999996  57899999999999999999 99999999998775


Q ss_pred             C--CCccchhhhhc-ccccccccccCCC------------CeE--EEc-cchhhhhhcc---chhhhcccccccCCCCCC
Q 044211          194 E--GETHISELLSG-LRAFDLARLNEDD------------GYV--VLL-DHIKKYFEED---RLNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       194 ~--~~~~~~~~~~g-~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  252 (292)
                      .  +.........| ++.|.+++...+.            |++  -++ |..+......   .....+...  .......
T Consensus       177 ~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~  254 (601)
T KOG0590|consen  177 NKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNK--GRFTQLP  254 (601)
T ss_pred             ccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceeecccc--cccccCc
Confidence            5  23333455667 8999888887762            666  444 4332111111   111111111  1101111


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVA  281 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~  281 (292)
                      .........+++.+++..+|+.|. ..++.
T Consensus       255 ~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~  284 (601)
T KOG0590|consen  255 WNSISDQAHDLLHKILKENPSNRLSIEELK  284 (601)
T ss_pred             cccCChhhhhcccccccCCchhcccccccc
Confidence            235566788899999999999999 76653

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.15  E-value=3.3e-10  Score=102.29  Aligned_cols=121  Identities=16%  Similarity=0.145  Sum_probs=103.9

Q ss_pred             CCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCH
Q 044211           59 QERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLL  138 (292)
Q Consensus        59 ~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~  138 (292)
                      ++.+|.|...+...........+-+..|+.++||||++++..+...+..|+|+|-+.  -|..++++.          ..
T Consensus        36 ~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l----------~~  103 (690)
T KOG1243|consen   36 DGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKEL----------GK  103 (690)
T ss_pred             cCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHh----------HH
Confidence            889999999887655555667888999999999999999999999999999999996  788788422          25


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          139 THRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       139 ~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      ..+.--+.||+.||.|||+  ..+++|+|+....|+|+..|.-||++|.+.....
T Consensus       104 ~~v~~Gl~qIl~AL~FL~~--d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~  156 (690)
T KOG1243|consen  104 EEVCLGLFQILAALSFLND--DCNLVHGNVCKDSVFVNESGEWKLGGLELVSKAS  156 (690)
T ss_pred             HHHHHHHHHHHHHHHHHhc--cCCeeeccEeeeeEEEcCCCcEEEeeeEEEeccc
Confidence            5666678999999999987  6799999999999999999999999998875543

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.14  E-value=1.8e-11  Score=114.93  Aligned_cols=183  Identities=19%  Similarity=0.254  Sum_probs=117.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      .|+||.||.+.++.       +.+++|+|+=+...      ++           +||..+.      +..+.|      |
T Consensus        93 ngAygavylvrh~~-------trqrfa~kiNkq~l------il-----------Rnilt~a------~npfvv------g  136 (1205)
T KOG0606|consen   93 NGAYGAVYLVRHKE-------TRQRFAMKINKQNL------IL-----------RNILTFA------GNPFVV------G  136 (1205)
T ss_pred             cCCCCceeeeeccc-------cccchhhcccccch------hh-----------hcccccc------CCccee------c
Confidence            79999999999976       78899984422221      11           1122221      222333      5


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +-...++       ..++++...        +.+++|+|   ..+|+|||+||+|.+|+.-|.+|+.|||+++.......
T Consensus       137 Dc~tllk-------~~g~lPvdm--------vla~Eylh---~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~a  198 (1205)
T KOG0606|consen  137 DCATLLK-------NIGPLPVDM--------VLAVEYLH---SYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLA  198 (1205)
T ss_pred             hhhhhcc-------cCCCCcchh--------hHHhHhhc---cCCeecCCCCCCcceeeecccccccchhhhhhhhhhcc
Confidence            5555552       333444322        78899999   89999999999999999999999999999875421110


Q ss_pred             c--------------chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCC
Q 044211          198 H--------------ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRS  249 (292)
Q Consensus       198 ~--------------~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~  249 (292)
                      .              .....+||+.|.++++...-           |+|  |.+ |.. +|+.+ ...+++...+...-.
T Consensus       199 tnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcv-pffGd-tpeelfg~visd~i~  276 (1205)
T KOG0606|consen  199 TNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCV-PFFGD-TPEELFGQVISDDIE  276 (1205)
T ss_pred             chhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeee-eccCC-CHHHHHhhhhhhhcc
Confidence            0              01345789999888776543           777  333 543 33332 233444444433332


Q ss_pred             CCC-chHHHHHHHHHHhHhcCCCCCCCC
Q 044211          250 CSG-NQQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       250 ~~~-~~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                      ++. .+..+++.++++.+.|+.+|..|-
T Consensus       277 wpE~dea~p~Ea~dli~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  277 WPEEDEALPPEAQDLIEQLLRQNPLCRL  304 (1205)
T ss_pred             ccccCcCCCHHHHHHHHHHHHhChHhhc
Confidence            222 134567899999999999999997

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.11  E-value=1.1e-09  Score=86.44  Aligned_cols=127  Identities=17%  Similarity=0.222  Sum_probs=83.0

Q ss_pred             eeEeeecCCCCccCccCCeEEEEEeecCCCc-------------c--------h-----HHHHHHHHHHHHhcCCC--Cc
Q 044211           43 KLYEGFFQNRPISGFFQERPVSVMKFDESKP-------------R--------T-----YDCCINNIVYASQMIHR--CI   94 (292)
Q Consensus        43 ~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-------------~--------~-----~~~~~~e~~~l~~l~h~--ni   94 (292)
                      .||.|...        ++..+|+|.......             .        .     .....+|...|.++...  ++
T Consensus         1 ~Vy~~~~~--------~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~v   72 (188)
T PF01163_consen    1 DVYHAIDP--------DGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPV   72 (188)
T ss_dssp             EEEEEEEC--------TTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS
T ss_pred             CEEEEECC--------CCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccC
Confidence            38888876        899999998642100             0        0     12356899999999755  56


Q ss_pred             cceeeeeecCCcceEEEeccC--CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH-hhcCCCCCcccCCCCCC
Q 044211           95 FKLIGCCLETQIPILVFEYIN--CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAY-LHVGFPRPVIFRDFKLS  171 (292)
Q Consensus        95 v~~~~~~~~~~~~~lv~e~~~--~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~-lh~~~~~~i~H~dlk~~  171 (292)
                      .+++.+.    ...+||||+.  +..+..+..         ..++......++.+++..+.. +|   ..+++|+||.+.
T Consensus        73 P~p~~~~----~~~ivME~I~~~G~~~~~l~~---------~~~~~~~~~~~~~~il~~~~~~~~---~~givHGDLs~~  136 (188)
T PF01163_consen   73 PKPYDYN----RNVIVMEYIGEDGVPLPRLKD---------VDLSPEEPKELLEEILEEIIKMLH---KAGIVHGDLSEY  136 (188)
T ss_dssp             --EEEEE----TTEEEEE--EETTEEGGCHHH---------CGGGGSTHHHHHHHHHHHHHHHHH---CTTEEESS-STT
T ss_pred             CcEEEEe----CCEEEEEecCCCccchhhHHh---------ccccchhHHHHHHHHHHHHHHHHH---hcCceecCCChh
Confidence            6666543    4579999998  655655441         112233455667777775555 57   899999999999


Q ss_pred             ceEecCCCceEEeecccccccCC
Q 044211          172 NILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       172 nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ||+++++ .+.|.|||.+.....
T Consensus       137 NIlv~~~-~~~iIDf~qav~~~~  158 (188)
T PF01163_consen  137 NILVDDG-KVYIIDFGQAVDSSH  158 (188)
T ss_dssp             SEEEETT-CEEE--GTTEEETTS
T ss_pred             hEEeecc-eEEEEecCcceecCC
Confidence            9999988 999999999876653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=99.10  E-value=8.3e-10  Score=97.06  Aligned_cols=146  Identities=10%  Similarity=0.096  Sum_probs=115.7

Q ss_pred             CCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec----CCcceEEEeccCC
Q 044211           41 GYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE----TQIPILVFEYINC  116 (292)
Q Consensus        41 ~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~----~~~~~lv~e~~~~  116 (292)
                      ..+.|++....       +|..|.+|.++............-++.++++.|+|||++..++..    +..+.+|++|+++
T Consensus       289 ~~Ttyk~~s~~-------DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~  361 (655)
T KOG3741|consen  289 SITTYKATSNV-------DGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPS  361 (655)
T ss_pred             cceeEeeeecc-------CCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCC
Confidence            47788888764       999999999965544444445567889999999999999999873    4568899999874


Q ss_pred             -CChhHHhhhhCC--------CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          117 -GSLADRIRIHHT--------PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       117 -gsL~~~l~~~~~--------~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                       ++|.++.=....        ....+...++..+|.++.|+..||.++|   .-|+.-+-|.+++|+++.+.+++|+.+|
T Consensus       362 s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIH---ssGLAck~L~~~kIlv~G~~RIriS~C~  438 (655)
T KOG3741|consen  362 SPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIH---SSGLACKTLDLKKILVTGKMRIRISGCG  438 (655)
T ss_pred             CchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHH---hcCceeecccHhHeEeeCcceEEEeccc
Confidence             677766511000        0134566788999999999999999999   8888889999999999999899999999


Q ss_pred             cccccCCCC
Q 044211          188 FSISIPEGE  196 (292)
Q Consensus       188 ~a~~~~~~~  196 (292)
                      ....+.++.
T Consensus       439 i~Dvl~~d~  447 (655)
T KOG3741|consen  439 IMDVLQEDP  447 (655)
T ss_pred             ceeeecCCC
Confidence            988776554

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=99.10  E-value=2.1e-09  Score=89.97  Aligned_cols=133  Identities=9%  Similarity=0.010  Sum_probs=96.0

Q ss_pred             CeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hH----------HHHHHHHHHHHhcCCCCc--cceeeeeec-----
Q 044211           42 YKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TY----------DCCINNIVYASQMIHRCI--FKLIGCCLE-----  103 (292)
Q Consensus        42 g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~----------~~~~~e~~~l~~l~h~ni--v~~~~~~~~-----  103 (292)
                      ..|.+..+         .|+.|.||......-. ..          ..+.+|...+.+|...+|  ..++++...     
T Consensus        36 rrvvr~~~---------~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~  106 (268)
T PRK15123         36 RRTLRFEL---------AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPA  106 (268)
T ss_pred             ceEEEEEE---------CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCc
Confidence            34556666         8889999976433210 01          147789999988854333  344444432     


Q ss_pred             CCcceEEEeccCCC-ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-----
Q 044211          104 TQIPILVFEYINCG-SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-----  177 (292)
Q Consensus       104 ~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-----  177 (292)
                      ....++|+|++++. +|.+++....     ....+......++.+++..+..||   ..+++|+|++++|||++.     
T Consensus       107 ~~~s~LVte~l~~~~sL~~~~~~~~-----~~~~~~~~~~~ll~~la~~i~~LH---~~Gi~HgDL~~~NiLl~~~~~~~  178 (268)
T PRK15123        107 TRTSFIITEDLAPTISLEDYCADWA-----TNPPDPRLKRMLIKRVATMVRDMH---AAGINHRDCYICHFLLHLPFPGR  178 (268)
T ss_pred             cceeEEEEeeCCCCccHHHHHHhhc-----ccCCCHHHHHHHHHHHHHHHHHHH---HCcCccCCCChhhEEEeccccCC
Confidence            23468999999975 8999983211     234456677889999999999999   999999999999999985     


Q ss_pred             --CCceEEeecccccc
Q 044211          178 --ENVAKLFDFSFSIS  191 (292)
Q Consensus       178 --~~~~kl~Dfg~a~~  191 (292)
                        +..+.++||+.+..
T Consensus       179 ~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        179 EEDLKLSVIDLHRAQI  194 (268)
T ss_pred             CCCceEEEEECCcccc
Confidence              46799999998854

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=2.2e-11  Score=106.80  Aligned_cols=160  Identities=24%  Similarity=0.308  Sum_probs=110.3

Q ss_pred             cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEee
Q 044211          106 IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFD  185 (292)
Q Consensus       106 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~D  185 (292)
                      .+++.|++|...+|.+++++.    ......+......++.|++.|+.|      ++.+|+|+||.||+...+..+||.|
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr----~~~e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgD  399 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRR----RTGEERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGD  399 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCC----CcccccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhhhhh
Confidence            468999999999999999422    234456667788999999999987      5789999999999999999999999


Q ss_pred             cccccccCCCC-----ccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhccccccc
Q 044211          186 FSFSISIPEGE-----THISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMG  246 (292)
Q Consensus       186 fg~a~~~~~~~-----~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~  246 (292)
                      ||+........     ........||..|+.|+-..      +.     |++  |++ -....+.......++-+..+.+
T Consensus       400 Fgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~~t~~d~r~g~ip~  479 (516)
T KOG1033|consen  400 FGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFERIATLTDIRDGIIPP  479 (516)
T ss_pred             hhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHHHhhhhhhcCCCCh
Confidence            99987776544     12234567899997665333      33     777  766 3333333333333222222211


Q ss_pred             CCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHH
Q 044211          247 DRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDV  280 (292)
Q Consensus       247 ~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el  280 (292)
                      ..     ....+.-..|+.+++...|.+|| +.+.
T Consensus       480 ~~-----~~d~p~e~~ll~~lls~~p~~RP~~~~~  509 (516)
T KOG1033|consen  480 EF-----LQDYPEEYTLLQQLLSPSPEERPSAIEV  509 (516)
T ss_pred             HH-----hhcCcHHHHHHHHhcCCCcccCchHHHH
Confidence            10     11123456788999999999999 5543

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.92  E-value=1.6e-09  Score=96.75  Aligned_cols=227  Identities=15%  Similarity=0.114  Sum_probs=151.0

Q ss_pred             cCCCeeEeeec--CCCCccCccCCeEEEEEeecC--CCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           39 KNGYKLYEGFF--QNRPISGFFQERPVSVMKFDE--SKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        39 G~~g~V~~~~~--~~~~~~~~~~~~~vaiK~~~~--~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      |.+|.||.+..  ..       ++..+|+|.-+.  ..+.....-.+|+...+++ .|+|.++.+..|...+..++-+|+
T Consensus       127 g~~~s~~~~~~~~~~-------s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfiqtE~  199 (524)
T KOG0601|consen  127 GSKGSVFKSRCTNSE-------SPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILFIQTEL  199 (524)
T ss_pred             CCCceeecccCCccc-------CCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcceeeecc
Confidence            99999999988  43       888999998432  2222333445778888888 599999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHH----HHHHhhcCCCCCcccCCCCCCceEecCC-CceEEeeccc
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN----AIAYLHVGFPRPVIFRDFKLSNILFNEE-NVAKLFDFSF  188 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~----~l~~lh~~~~~~i~H~dlk~~nili~~~-~~~kl~Dfg~  188 (292)
                      |. .+|..+..      .....++...++....+...    |+.++|   ...++|.|++|.||+..++ ..+++.|||+
T Consensus       200 ~~-~sl~~~~~------~~~~~~p~~~l~~~~~~~~~~~~~al~~~h---s~~~~~~~~kp~~i~~~~~~~s~~~~df~~  269 (524)
T KOG0601|consen  200 CG-ESLQSYCH------TPCNFLPDNLLWNSLRDWLSRDVTALSHLH---SNNIVHDDLKPANIFTTSDWTSCKLTDFGL  269 (524)
T ss_pred             cc-chhHHhhh------cccccCCchhhhhHHhhhhhcccccccccC---CCcccccccchhheecccccceeecCCcce
Confidence            98 48887772      23344666677777777777    999999   8999999999999999999 8899999999


Q ss_pred             ccccCCCCccc----hhhhhcccccccccccCCC----------CeE--EEc-cchhhhhh-ccchhhhcccccccCCCC
Q 044211          189 SISIPEGETHI----SELLSGLRAFDLARLNEDD----------GYV--VLL-DHIKKYFE-EDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       189 a~~~~~~~~~~----~~~~~g~~~y~~~~~~~~~----------Gvi--el~-~~~~~~~~-~~~~~~~~~~~~~~~~~~  250 (292)
                      ...+.+.....    .....|...|+.++.+...          |.+  +.. +...+... ...+..+-...+..... 
T Consensus       270 v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e~~-  348 (524)
T KOG0601|consen  270 VSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPLEFC-  348 (524)
T ss_pred             eEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCchhhh-
Confidence            88876543221    2223567778777777655          333  111 11111111 00111100000000000 


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCCHHHHHHHHHH
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRPMVDVAKKTQA  286 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP~~el~~~L~~  286 (292)
                         ......+..++.++++.+|-.|+..+++..|.-
T Consensus       349 ---~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~  381 (524)
T KOG0601|consen  349 ---EGGSSSLRSVTSQMLDEDPRLRLTAQILTALNV  381 (524)
T ss_pred             ---cCcchhhhhHHHHhcCcchhhhhHHHHHhcccc
Confidence               011334556889999999999995566555543

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.82  E-value=7e-08  Score=78.00  Aligned_cols=125  Identities=18%  Similarity=0.137  Sum_probs=91.7

Q ss_pred             CCeEEEEEeecC-CC------cchHHHHHHHHHHHHhcCCC--CccceeeeeecCC----cceEEEeccCC-CChhHHhh
Q 044211           59 QERPVSVMKFDE-SK------PRTYDCCINNIVYASQMIHR--CIFKLIGCCLETQ----IPILVFEYINC-GSLADRIR  124 (292)
Q Consensus        59 ~~~~vaiK~~~~-~~------~~~~~~~~~e~~~l~~l~h~--niv~~~~~~~~~~----~~~lv~e~~~~-gsL~~~l~  124 (292)
                      .++.+-+|.+-. ..      +-...+..+|...+..|...  .+...+++.....    ..++|+|++++ .+|.+++.
T Consensus        31 ~~~~y~~k~~~~~~~~~~~~~~~~~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~  110 (206)
T PF06293_consen   31 VGRRYYRKRLWNKLRRDRLRFPLRRSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQ  110 (206)
T ss_pred             cceEEEECCeechhccchhhhcccchHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHH
Confidence            566677775421 11      12335688899988888533  3446666665432    34799999986 47999993


Q ss_pred             hhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC---ceEEeecccccccC
Q 044211          125 IHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN---VAKLFDFSFSISIP  193 (292)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~---~~kl~Dfg~a~~~~  193 (292)
                             .....+......++.+++..+.-||   ..+++|+|++++|||++.++   .+.+.||+.+....
T Consensus       111 -------~~~~~~~~~~~~ll~~l~~~i~~lH---~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  111 -------QWEQLDPSQRRELLRALARLIAKLH---DAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             -------hhcccchhhHHHHHHHHHHHHHHHH---HCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCC
Confidence                   2122666777889999999999999   99999999999999999887   79999999877543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=1.5e-08  Score=90.50  Aligned_cols=138  Identities=16%  Similarity=0.110  Sum_probs=108.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHH--HHHHHHHHHhc-CCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDC--CINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~--~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|.|+-|+....+      ..++..|++|.+........++  -+.|+.+...+ .|.+++.....|......++-.|||
T Consensus       275 ~~~~~~~~~~~~r------~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e~~  348 (524)
T KOG0601|consen  275 DGNFSSVFKVSKR------PEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPLEFC  348 (524)
T ss_pred             CCccccceeeeec------CCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCchhhh
Confidence            5666777766543      1277889999986643333322  35677777766 5888888888888777788999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC-CceEEeecccccc
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE-NVAKLFDFSFSIS  191 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~-~~~kl~Dfg~a~~  191 (292)
                      +++++...+       .-...+++..++++..|++.++.++|   ...++|+|++|+||++..+ +..++.|||....
T Consensus       349 ~~~s~~l~~-------~~~~~~d~~~~~~~~~q~~~~l~~i~---s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~  416 (524)
T KOG0601|consen  349 EGGSSSLRS-------VTSQMLDEDPRLRLTAQILTALNVIH---SKLFVHLDVKPSNILISNDGFFSKLGDFGCWTR  416 (524)
T ss_pred             cCcchhhhh-------HHHHhcCcchhhhhHHHHHhcccccc---chhhhcccccccceeeccchhhhhccccccccc
Confidence            998887666       23456788888999999999999999   9999999999999999986 8899999998754

>PRK09902 hypothetical protein; Provisional

Probab=98.76  E-value=3.7e-07  Score=72.86  Aligned_cols=136  Identities=14%  Similarity=0.050  Sum_probs=100.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-----C-cchHHHHHHHHHHHHhcCCCC--ccceeeeee-c----C
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-----K-PRTYDCCINNIVYASQMIHRC--IFKLIGCCL-E----T  104 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-----~-~~~~~~~~~e~~~l~~l~h~n--iv~~~~~~~-~----~  104 (292)
                      .||-+-|++-.+         .|+.+-+|.-...     . +-....|.+|+..+.+|..-+  +.++. ++. .    .
T Consensus        28 rgG~SgV~r~~~---------~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~   97 (216)
T PRK09902         28 RNGMSGVQCVER---------NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGE   97 (216)
T ss_pred             CCCcceEEEEEe---------CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCc
Confidence            688888999888         6677888875421     1 234467999999999995332  44444 222 1    1


Q ss_pred             CcceEEEeccC-CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc--e
Q 044211          105 QIPILVFEYIN-CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV--A  181 (292)
Q Consensus       105 ~~~~lv~e~~~-~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~--~  181 (292)
                      -.-+||+|-+. ..+|.+++..     ....+.+......+..+++..+.-||   ..++.|+|+.++||+++.++.  +
T Consensus        98 ~rA~LVTe~L~g~~~L~~~l~~-----~~~~~~~~~~k~~il~~va~~ia~LH---~~Gv~Hgdly~khIll~~~g~~~v  169 (216)
T PRK09902         98 WRALLVTEDMAGFISIADWYAQ-----HAVSPYSDEVRQAMLKAVALAFKKMH---SVNRQHGCCYVRHIYVKTEGKAEA  169 (216)
T ss_pred             eEEEEEEEeCCCCccHHHHHhc-----CCcCCcchHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHhheeecCCCCeeE
Confidence            23578999765 3588888831     12345677778899999999999999   999999999999999986677  9


Q ss_pred             EEeecccccc
Q 044211          182 KLFDFSFSIS  191 (292)
Q Consensus       182 kl~Dfg~a~~  191 (292)
                      .+.||.-++.
T Consensus       170 ~lIDlEk~r~  179 (216)
T PRK09902        170 GFLDLEKSRR  179 (216)
T ss_pred             EEEEhhccch
Confidence            9999976653

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.68  E-value=2.4e-07  Score=84.09  Aligned_cols=137  Identities=12%  Similarity=0.043  Sum_probs=88.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchH----------------------------------H------
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTY----------------------------------D------   77 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~----------------------------------~------   77 (292)
                      .++-|.||+|++.        +|+.||||+..+.-....                                  +      
T Consensus       135 sASIaQVH~A~L~--------sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~El  206 (517)
T COG0661         135 SASIAQVHRAVLK--------SGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREEL  206 (517)
T ss_pred             hhhHhhheeEEec--------CCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHh
Confidence            7788999999997        899999998754321110                                  0      


Q ss_pred             HHHHHHHHHHhcC-----CCCccceeeee-ecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHH
Q 044211           78 CCINNIVYASQMI-----HRCIFKLIGCC-LETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANA  151 (292)
Q Consensus        78 ~~~~e~~~l~~l~-----h~niv~~~~~~-~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~  151 (292)
                      .+.+|...+.+++     .++ +.+-.++ .......++|||++|..+.+...      ......+...+.....++.  
T Consensus       207 Dy~~EA~n~~~~~~nf~~~~~-v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~------l~~~g~d~k~ia~~~~~~f--  277 (517)
T COG0661         207 DYRREAANAERFRENFKDDPD-VYVPKVYWEYTTRRVLTMEWIDGIKISDIAA------LKSAGIDRKELAELLVRAF--  277 (517)
T ss_pred             CHHHHHHHHHHHHHHcCCCCC-eEeceeehhccCCcEEEEEeeCCEecccHHH------HHhcCCCHHHHHHHHHHHH--
Confidence            1223444444431     232 3333333 23566789999999988888852      1123344333333222221  


Q ss_pred             HHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          152 IAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       152 l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +..+-   ..+++|.|..|.||+++.+|.+.+.|||+...+.+
T Consensus       278 ~~q~~---~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         278 LRQLL---RDGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             HHHHH---hcCccccCCCccceEEecCCcEEEEcCcceecCCH
Confidence            22233   46899999999999999999999999999877754

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.63  E-value=2.4e-07  Score=75.90  Aligned_cols=128  Identities=17%  Similarity=0.151  Sum_probs=89.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC------------------cc----hHHHHHHHHHHHHhcCCC--C
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK------------------PR----TYDCCINNIVYASQMIHR--C   93 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~------------------~~----~~~~~~~e~~~l~~l~h~--n   93 (292)
                      .|-=+.||.|...        .|.++|||.=....                  ..    ......+|.+.|..|...  .
T Consensus       101 vGKEsdVY~~~~~--------~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~  172 (304)
T COG0478         101 VGKESDVYVAIDP--------KGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVK  172 (304)
T ss_pred             cCccceEEEEECC--------CCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCC
Confidence            6777899999997        89999999631100                  00    012356899999998644  6


Q ss_pred             ccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044211           94 IFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNI  173 (292)
Q Consensus        94 iv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~ni  173 (292)
                      |.+.+++    +...+||||.++--|...-            ++....-.++..|+.-+.-+.   ..+++|+|+++=||
T Consensus       173 VP~P~~~----nRHaVvMe~ieG~eL~~~r------------~~~en~~~il~~il~~~~~~~---~~GiVHGDlSefNI  233 (304)
T COG0478         173 VPKPIAW----NRHAVVMEYIEGVELYRLR------------LDVENPDEILDKILEEVRKAY---RRGIVHGDLSEFNI  233 (304)
T ss_pred             CCCcccc----ccceeeeehcccceeeccc------------CcccCHHHHHHHHHHHHHHHH---HcCccccCCchheE
Confidence            6666654    4667999999974443222            233344445555555566666   68999999999999


Q ss_pred             EecCCCceEEeeccccccc
Q 044211          174 LFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       174 li~~~~~~kl~Dfg~a~~~  192 (292)
                      +++++|.+++.||=-+...
T Consensus       234 lV~~dg~~~vIDwPQ~v~~  252 (304)
T COG0478         234 LVTEDGDIVVIDWPQAVPI  252 (304)
T ss_pred             EEecCCCEEEEeCcccccC
Confidence            9999999999999665544

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.54  E-value=1.4e-06  Score=69.94  Aligned_cols=114  Identities=18%  Similarity=0.085  Sum_probs=74.2

Q ss_pred             CCeEEEEEeecCCCcchHHH---------HHHHHHHHHhcC---CCCccceeeeeec-----CCcceEEEeccCCCChhH
Q 044211           59 QERPVSVMKFDESKPRTYDC---------CINNIVYASQMI---HRCIFKLIGCCLE-----TQIPILVFEYINCGSLAD  121 (292)
Q Consensus        59 ~~~~vaiK~~~~~~~~~~~~---------~~~e~~~l~~l~---h~niv~~~~~~~~-----~~~~~lv~e~~~~gsL~~  121 (292)
                      +++.+++|..........+.         ..+.+..+.+++   -.....++.+...     ....+++|||++|..|.+
T Consensus        53 ~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~ekk~~~~~~~~~ll~EYIeG~~l~d  132 (229)
T PF06176_consen   53 DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAEKKIFRYTSSYVLLMEYIEGVELND  132 (229)
T ss_pred             CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeeeeeeccceeEEEEEEEEecCeeccc
Confidence            78889999876543222221         223333333442   2333333333332     234568999999988866


Q ss_pred             HhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          122 RIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       122 ~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      +.           .+++    .+...++.++.-+|   ..|++|+|..|+|++++++ .+++.||+..+.
T Consensus       133 ~~-----------~i~e----~~~~ki~~~ikqlH---~~G~~HGD~hpgNFlv~~~-~i~iID~~~k~~  183 (229)
T PF06176_consen  133 IE-----------DIDE----DLAEKIVEAIKQLH---KHGFYHGDPHPGNFLVSNN-GIRIIDTQGKRM  183 (229)
T ss_pred             ch-----------hcCH----HHHHHHHHHHHHHH---HcCCccCCCCcCcEEEECC-cEEEEECccccc
Confidence            54           1222    24567778899999   9999999999999999966 489999977653

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.39  E-value=9.6e-06  Score=66.45  Aligned_cols=138  Identities=10%  Similarity=0.065  Sum_probs=81.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCC--ccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRC--IFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|..+.||+.           .+..+++|......  ......+|.+.++.+..-.  +.+++++....+...+|||+++
T Consensus        11 ~G~t~~~y~~-----------~~~~~VlR~~~~~~--~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~   77 (226)
T TIGR02172        11 EGGNGESYTH-----------KTGKWMLKLYNPGF--DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIV   77 (226)
T ss_pred             CCCCcceeEe-----------cCCCEEEEeCCCCC--CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecC
Confidence            7888999972           33457888876532  3345789999999986433  4677878777777889999999


Q ss_pred             CCC-hh--------------HH----hhhhCCCCCCCCCCCHHHHHHHHH----------HHHHH-HHHhh-cCCCCCcc
Q 044211          116 CGS-LA--------------DR----IRIHHTPQPQHEPLLLTHRLKIAM----------DIANA-IAYLH-VGFPRPVI  164 (292)
Q Consensus       116 ~gs-L~--------------~~----l~~~~~~~~~~~~l~~~~~~~i~~----------~i~~~-l~~lh-~~~~~~i~  164 (292)
                      |.+ +.              ..    +++.+........++.. ...+..          .+... ..+|. .+....++
T Consensus        78 G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~  156 (226)
T TIGR02172        78 GKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSY-KEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCL  156 (226)
T ss_pred             CccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHH-HHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceE
Confidence            753 11              11    11112111111111110 000100          00011 11111 01134568


Q ss_pred             cCCCCCCceEecCCCceEEeeccccc
Q 044211          165 FRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       165 H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      |+|+.|.||++++++ +.+.||+.+.
T Consensus       157 HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       157 HGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             ecCCCCCcEEEcCCC-cEEEechhcC
Confidence            999999999999887 9999998875

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.37  E-value=1.8e-05  Score=64.34  Aligned_cols=135  Identities=18%  Similarity=0.158  Sum_probs=91.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchH-------------------HH-----HHHHHHHHHhcC--C
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTY-------------------DC-----CINNIVYASQMI--H   91 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~-------------------~~-----~~~e~~~l~~l~--h   91 (292)
                      +|-=+.||+|.-.        ++..+|+|++........                   .+     ...|+..|+++.  +
T Consensus        58 tGKEA~Vy~a~~~--------~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAG  129 (268)
T COG1718          58 TGKEANVYLAETG--------DGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAG  129 (268)
T ss_pred             CCcceEEEeeccC--------CCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6777888888875        889999999864321111                   01     235666777763  3


Q ss_pred             CCccceeeeeecCCcceEEEeccCCC-ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCC
Q 044211           92 RCIFKLIGCCLETQIPILVFEYINCG-SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKL  170 (292)
Q Consensus        92 ~niv~~~~~~~~~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~  170 (292)
                      -.+.+.+++.    ...+||||+... .-.=.+        ...++.......+..+++..+.-|..  ..+++|+||+.
T Consensus       130 VrvP~Pi~~~----~nVLvMEfIg~~g~pAP~L--------kDv~~e~~e~~~~~~~~v~~~~~l~~--~a~LVHgDLSE  195 (268)
T COG1718         130 VRVPEPIAFR----NNVLVMEFIGDDGLPAPRL--------KDVPLELEEAEGLYEDVVEYMRRLYK--EAGLVHGDLSE  195 (268)
T ss_pred             CCCCCceeec----CCeEEEEeccCCCCCCCCc--------ccCCcCchhHHHHHHHHHHHHHHHHH--hcCcccccchh
Confidence            3334444443    346999998642 111111        23334444677788889899988882  38999999999


Q ss_pred             CceEecCCCceEEeecccccccCCC
Q 044211          171 SNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       171 ~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      =|||+. ++.+.|.|+|-|.....+
T Consensus       196 yNiL~~-~~~p~iID~~QaV~~~hp  219 (268)
T COG1718         196 YNILVH-DGEPYIIDVSQAVTIDHP  219 (268)
T ss_pred             hheEEE-CCeEEEEECccccccCCC
Confidence            999999 779999999999877643

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.36  E-value=9.3e-06  Score=67.39  Aligned_cols=141  Identities=11%  Similarity=-0.030  Sum_probs=84.9

Q ss_pred             ccCC-CeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNG-YKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~-g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|.+ ..||+...         .+..+.+|......   ...+..|+.+++.+. +--+.+++++....+..++|||+++
T Consensus         8 ~g~~~~~v~~~~~---------~~~~~~vk~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~   75 (244)
T cd05150           8 EGQSGATVYRLDG---------KNPGLYLKIAPSGP---TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVP   75 (244)
T ss_pred             CCCCcCeEEEEcC---------CCCcEEEEecCCCc---ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeC
Confidence            3444 78899877         55788888876543   334678999988884 4445677877776667899999999


Q ss_pred             CCChhHH----------------hhhhCCCCCCCCCCCHH--HHHHH-----------------------HHHHHHHHHH
Q 044211          116 CGSLADR----------------IRIHHTPQPQHEPLLLT--HRLKI-----------------------AMDIANAIAY  154 (292)
Q Consensus       116 ~gsL~~~----------------l~~~~~~~~~~~~l~~~--~~~~i-----------------------~~~i~~~l~~  154 (292)
                      |.++...                +++.+.......++...  .....                       ..++...|..
T Consensus        76 G~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  155 (244)
T cd05150          76 GVPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEA  155 (244)
T ss_pred             CccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHHh
Confidence            8766533                12212111111111110  00000                       1111222211


Q ss_pred             hh-cCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          155 LH-VGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       155 lh-~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      .. ......++|+|+.|.||++++++...|.||+.+.
T Consensus       156 ~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         156 TRPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             hCCCcCceEEECCCCCCccEEEeCCcEEEEEEccccc
Confidence            11 0113568999999999999998778899998875

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.31  E-value=4.2e-06  Score=66.40  Aligned_cols=105  Identities=25%  Similarity=0.263  Sum_probs=82.6

Q ss_pred             HHHHHHHHhcCC-CCccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 044211           80 INNIVYASQMIH-RCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVG  158 (292)
Q Consensus        80 ~~e~~~l~~l~h-~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~  158 (292)
                      .+|.-+++.+++ +++.+++|+|.    .+++.||...+++.....    ....-...+|..+.+|+.+++..+.++++.
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~CG----~~~v~E~~~~~~~~~~~~----~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~   78 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSCG----RFYVVEYVGAGSLYGIYR----PLSQFLQSPWEQRAKIALQLLELLEELDHG   78 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeECC----CEEEEEeecCcccccccc----ccccccccCHHHHHHHHHHHHHHHHHHhcC
Confidence            358888899976 69999999993    468999998766532110    001223578999999999999999999976


Q ss_pred             CCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          159 FPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       159 ~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      ....+.-.|++++|+.+++++.+|+.|.......
T Consensus        79 ~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   79 PLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVFVE  112 (188)
T ss_pred             CCCcEEEeecchHHeEEeCCCcEEEEechhcchh
Confidence            6567778999999999999999999999776544

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.29  E-value=1.2e-05  Score=73.07  Aligned_cols=136  Identities=12%  Similarity=0.052  Sum_probs=88.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchH-------------------------------H------HHH
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTY-------------------------------D------CCI   80 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~-------------------------------~------~~~   80 (292)
                      .-+.|.||+|+.+        +|+.||||+-++.-....                               +      .|.
T Consensus       171 aASlaQVhrA~L~--------~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~  242 (538)
T KOG1235|consen  171 AASLAQVHRARLK--------NGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFT  242 (538)
T ss_pred             hcchhheEEEEec--------CCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchH
Confidence            5668999999998        999999998654321110                               0      133


Q ss_pred             HHHHHHHhc----CCCC------ccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHH
Q 044211           81 NNIVYASQM----IHRC------IFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN  150 (292)
Q Consensus        81 ~e~~~l~~l----~h~n------iv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~  150 (292)
                      +|.+...++    .|-+      |.+++.-+  .....++|||++|..+.++-.      -....++...+..-+.+...
T Consensus       243 ~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~--st~RVLtME~~~G~~i~Dl~~------i~~~gi~~~~i~~~l~~~~~  314 (538)
T KOG1235|consen  243 KEAKNAERFRENFKDFSLLTYVLVPKVYWDL--STKRVLTMEYVDGIKINDLDA------IDKRGISPHDILNKLVEAYL  314 (538)
T ss_pred             HHHHhHHHHHHHHHhcccccceeCCeehhhc--CcceEEEEEecCCccCCCHHH------HHHcCCCHHHHHHHHHHHHH
Confidence            444444433    3444      33333222  345689999999988876642      12344665555555555444


Q ss_pred             HHHHhhcCCCCCcccCCCCCCceEecC----CCceEEeecccccccCC
Q 044211          151 AIAYLHVGFPRPVIFRDFKLSNILFNE----ENVAKLFDFSFSISIPE  194 (292)
Q Consensus       151 ~l~~lh~~~~~~i~H~dlk~~nili~~----~~~~kl~Dfg~a~~~~~  194 (292)
                      -+-+-     .|++|+|=.|.||++..    ++.+.+.|||+...+..
T Consensus       315 ~qIf~-----~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  315 EQIFK-----TGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             HHHHh-----cCCccCCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence            44443     47999999999999994    56799999999876643

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.10  E-value=5.2e-05  Score=58.51  Aligned_cols=121  Identities=11%  Similarity=0.042  Sum_probs=85.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCcc-ceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIF-KLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv-~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|.+|.||.|.|         .+..+|+|.-..+++  ...+..|.++|..+.-.++- +++.+.    ..++.|||..|
T Consensus        32 KG~~s~Vyl~~~---------~~~~~a~Kvrr~ds~--r~~l~kEakiLeil~g~~~~p~vy~yg----~~~i~me~i~G   96 (201)
T COG2112          32 KGTTSVVYLGEW---------RGGEVALKVRRRDSP--RRNLEKEAKILEILAGEGVTPEVYFYG----EDFIRMEYIDG   96 (201)
T ss_pred             cccccEEEEeec---------cCceEEEEEecCCcc--hhhHHHHHHHHHHhhhcCCCceEEEec----hhhhhhhhhcC
Confidence            899999999999         777999999776643  34588899999998765543 444433    34566999998


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCC-CCceEecCCCceEEeeccccc
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFK-LSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk-~~nili~~~~~~kl~Dfg~a~  190 (292)
                      .+|...-.        .  .+...+.+++    .+---|-   ..+|-|+.++ |...++..++.+.|.||..|.
T Consensus        97 ~~L~~~~~--------~--~~rk~l~~vl----E~a~~LD---~~GI~H~El~~~~k~vlv~~~~~~iIDFd~At  154 (201)
T COG2112          97 RPLGKLEI--------G--GDRKHLLRVL----EKAYKLD---RLGIEHGELSRPWKNVLVNDRDVYIIDFDSAT  154 (201)
T ss_pred             cchhhhhh--------c--ccHHHHHHHH----HHHHHHH---HhccchhhhcCCceeEEecCCcEEEEEccchh
Confidence            88877761        1  1444444433    3333344   7789999986 455555555599999998886

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.04  E-value=7.3e-05  Score=61.20  Aligned_cols=144  Identities=15%  Similarity=0.148  Sum_probs=79.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCC--Cccceeeeeec---CCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHR--CIFKLIGCCLE---TQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~--niv~~~~~~~~---~~~~~lv~e  112 (292)
                      .|..+.||+....        + ..+++|.....  .....+..|..+++.+...  .+.+++.....   ....+++|+
T Consensus         7 ~G~~n~~~~v~~~--------~-~~~vlK~~~~~--~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~   75 (239)
T PF01636_consen    7 GGFSNRVYRVTTD--------D-GRYVLKFYRPP--DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLME   75 (239)
T ss_dssp             ESSSSEEEEEEET--------T-SEEEEEEESSH--HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEE
T ss_pred             CCCeeeEEEEEEC--------C-cEEEEEEeCCC--CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEE
Confidence            4667889999984        4 79999997654  3456788899998888533  35566664432   234688999


Q ss_pred             ccCCCChhH----------------HhhhhCCCCCCCCCCCHHH---------HHHH------------HHHHHH-HHHH
Q 044211          113 YINCGSLAD----------------RIRIHHTPQPQHEPLLLTH---------RLKI------------AMDIAN-AIAY  154 (292)
Q Consensus       113 ~~~~gsL~~----------------~l~~~~~~~~~~~~l~~~~---------~~~i------------~~~i~~-~l~~  154 (292)
                      ++++.++..                .+.+.+.............         ....            ...+.. .+..
T Consensus        76 ~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (239)
T PF01636_consen   76 YIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQE  155 (239)
T ss_dssp             EESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             EeccccccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHHHH
Confidence            999877766                2222111101111111110         0000            011111 2222


Q ss_pred             hh----cCCCCCcccCCCCCCceEec-CCCceEEeeccccccc
Q 044211          155 LH----VGFPRPVIFRDFKLSNILFN-EENVAKLFDFSFSISI  192 (292)
Q Consensus       155 lh----~~~~~~i~H~dlk~~nili~-~~~~~kl~Dfg~a~~~  192 (292)
                      ++    ......++|+|+.|.||+++ +++.+-|.||+.+...
T Consensus       156 ~~~~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~~  198 (239)
T PF01636_consen  156 LEALLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGWG  198 (239)
T ss_dssp             HHHHHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-EEE
T ss_pred             HHhhhccCCCcEEEEeccccccceeeeccceeEEEecccceEC
Confidence            22    11256789999999999999 5566679999887533

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.98  E-value=0.0002  Score=57.14  Aligned_cols=124  Identities=17%  Similarity=0.168  Sum_probs=86.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC----------------cchHHHHHHHHHHHHhcC------CCCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK----------------PRTYDCCINNIVYASQMI------HRCIF   95 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~e~~~l~~l~------h~niv   95 (292)
                      +|+.-.||..-.          +....||+.....                ....++..+|+.....+.      +.+|.
T Consensus        11 ~G~~R~cy~HP~----------dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~   80 (199)
T PF10707_consen   11 QGGERDCYQHPD----------DPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIP   80 (199)
T ss_pred             cCCCceEEECCC----------CCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccc
Confidence            677777776443          3456778876554                123466778888777766      78899


Q ss_pred             ceeeeeecCCcceEEEeccC------CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCC
Q 044211           96 KLIGCCLETQIPILVFEYIN------CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFK  169 (292)
Q Consensus        96 ~~~~~~~~~~~~~lv~e~~~------~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk  169 (292)
                      +++|+..++...-+|+|.+.      ..+|.++++        ...++. .....+.++.   .||-   ...|+.+|++
T Consensus        81 r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~--------~~~~~~-~~~~~L~~f~---~~l~---~~~Iv~~dl~  145 (199)
T PF10707_consen   81 RFYGFVETNLGLGLVVELIRDADGNISPTLEDYLK--------EGGLTE-ELRQALDEFK---RYLL---DHHIVIRDLN  145 (199)
T ss_pred             cEeEEEecCCceEEEEEEEECCCCCcCccHHHHHH--------cCCccH-HHHHHHHHHH---HHHH---HcCCeecCCC
Confidence            99999999988999999753      246778882        334555 5555555554   4555   6789999999


Q ss_pred             CCceEecCC--C--ceEEeec
Q 044211          170 LSNILFNEE--N--VAKLFDF  186 (292)
Q Consensus       170 ~~nili~~~--~--~~kl~Df  186 (292)
                      |.||++..+  +  .++|+|-
T Consensus       146 ~~NIv~~~~~~~~~~lvlIDG  166 (199)
T PF10707_consen  146 PHNIVVQRRDSGEFRLVLIDG  166 (199)
T ss_pred             cccEEEEecCCCceEEEEEeC
Confidence            999999743  2  4667763

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PLN02876 acyl-CoA dehydrogenase

Probab=97.97  E-value=0.00019  Score=69.96  Aligned_cols=73  Identities=10%  Similarity=0.056  Sum_probs=50.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCC---eEEEEEeecCCC-cchHHHHHHHHHHHHhcC-CCCc--cceeeeeecC---Ccc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQE---RPVSVMKFDESK-PRTYDCCINNIVYASQMI-HRCI--FKLIGCCLET---QIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~---~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~-h~ni--v~~~~~~~~~---~~~  107 (292)
                      .|.+..+|+..+.        .+   ..+++|+..... ......+.+|..+++.+. |.++  .++++++.+.   +..
T Consensus        48 gG~sn~ty~l~~~--------~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~  119 (822)
T PLN02876         48 HGQSNPTFLLEVG--------NGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTA  119 (822)
T ss_pred             CCCcCceEEEEEC--------CCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCc
Confidence            5667788887764        32   467777754321 223456889999999995 6664  6778777654   467


Q ss_pred             eEEEeccCCCC
Q 044211          108 ILVFEYINCGS  118 (292)
Q Consensus       108 ~lv~e~~~~gs  118 (292)
                      |+||||+++..
T Consensus       120 flVME~v~G~~  130 (822)
T PLN02876        120 FYIMEYLEGRI  130 (822)
T ss_pred             eEEEEecCCcc
Confidence            89999998754

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.94  E-value=2.8e-06  Score=80.94  Aligned_cols=222  Identities=13%  Similarity=0.110  Sum_probs=138.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|.++.++.+.-..       .+...++|.....   .....+....+-.++-...+|-++...--+......+++++|+
T Consensus       814 S~sp~ss~p~~pa~-------sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~L~~~~~  886 (1205)
T KOG0606|consen  814 SGSPSSSFPASPAG-------SGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLPLVGHYL  886 (1205)
T ss_pred             CCCCcccccCCccc-------cccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcchhhHHh
Confidence            78888888777653       4544444443221   1111222223333333334455554444444566789999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC-
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP-  193 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~-  193 (292)
                      .+++|...+.       ..+..+..-...+...+..++++||   ...+.|+|++|.|+++..++..++.||+...... 
T Consensus       887 ~~~~~~Skl~-------~~~~~saepaRs~i~~~vqs~e~L~---s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~  956 (1205)
T KOG0606|consen  887 NGGDLPSKLH-------NSGCLSAEPARSPILERVQSLESLH---SSLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGL  956 (1205)
T ss_pred             ccCCchhhhh-------cCCCcccccccchhHHHHhhhhccc---cchhhcccccccchhhcccCCcccCcccccccccc
Confidence            9999999992       2334555555666777889999999   7779999999999999999999999998432211 


Q ss_pred             -----CC-------------------C-----ccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhh
Q 044211          194 -----EG-------------------E-----THISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKY  230 (292)
Q Consensus       194 -----~~-------------------~-----~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~  230 (292)
                           ..                   .     ........||+.|.+++..--.           |++  |.+ |.  +.
T Consensus       957 ~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~--pp 1034 (1205)
T KOG0606|consen  957 IPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGI--PP 1034 (1205)
T ss_pred             ccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCC--CC
Confidence                 00                   0     0011234456666655554322           444  444 43  33


Q ss_pred             hhccchhhhcccccccCCCCCC-chHHHHHHHHHHhHhcCCCCCCCC-HH
Q 044211          231 FEEDRLNEIIDPLIMGDRSCSG-NQQQLQAFAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~li~~Cl~~dP~~RP-~~  278 (292)
                      +.......+++-.+....+++. +........+++...+..+|.+|- +.
T Consensus      1035 ~na~tpq~~f~ni~~~~~~~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1035 FNAETPQQIFENILNRDIPWPEGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             CCCcchhhhhhccccCCCCCCCCccccChhhhhhhhhhhccCchhccCcc
Confidence            4444455555656666655553 345677889999999999999998 54

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=97.85  E-value=5.7e-06  Score=78.70  Aligned_cols=117  Identities=11%  Similarity=0.123  Sum_probs=76.0

Q ss_pred             cCCCCCC-ceEecCCCceEEeecccccccCCCCc-cchhhhhcccccccccccCCC-----------CeE--EEc-cchh
Q 044211          165 FRDFKLS-NILFNEENVAKLFDFSFSISIPEGET-HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIK  228 (292)
Q Consensus       165 H~dlk~~-nili~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~  228 (292)
                      +++..|. |++++..+..++.|||.+........ .......||+.|++||+....           ||+  ||+ |+. 
T Consensus       500 ~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~vGT~~Y~APE~l~~~~~~~~~DiwSlG~il~ElltG~~-  578 (669)
T cd05610         500 TQKPRPHGNLYQTPKQVKIGTPYRTPKSVRRGAAPVEGERILGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIP-  578 (669)
T ss_pred             CCCCCCCCceeECCccccccccCCCchhhhcccccccCCceeeCccccCHHHcCCCCCCcHHHHHHHHHHHHHHHHCCC-
Confidence            3455555 67777777889999999877643322 223346789999988865433           888  888 543 


Q ss_pred             hhhhccchhhhcccccccCCCCCC-chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          229 KYFEEDRLNEIIDPLIMGDRSCSG-NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      |+.. ......+...+....+++. ....+..+.+++.+||..||.+|| +.++++.
T Consensus       579 pf~~-~~~~~~~~~il~~~~~~p~~~~~~~~~~~~~l~~lL~~dP~~R~ta~e~l~h  634 (669)
T cd05610         579 PFND-ETPQQVFQNILNRDIPWPEGEEKLSVNAQNAIEILLTMDPTKRAGLKELKQH  634 (669)
T ss_pred             CCCC-CCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhHCcCHHHHHhC
Confidence            4332 2233333333333222221 124566789999999999999999 9999876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>PRK10593 hypothetical protein; Provisional

Probab=97.78  E-value=0.00064  Score=58.14  Aligned_cols=71  Identities=11%  Similarity=-0.020  Sum_probs=52.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCC---CCccceeeeeec---CCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIH---RCIFKLIGCCLE---TQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h---~niv~~~~~~~~---~~~~~lv~  111 (292)
                      .|..+.||+....        + ..+.+|..+..  .....+..|...|+.|.-   -.+.++++++..   .+..++||
T Consensus        24 ~G~~~~vy~~~~~--------~-~~~~~k~~~~~--~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVm   92 (297)
T PRK10593         24 EQPYAALWALYDS--------Q-GNPMPLMARSF--STPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLL   92 (297)
T ss_pred             CccceeEEEEEcC--------C-CCEEEEEeccc--ccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEE
Confidence            7889999998773        3 45777875432  123568899999999853   357788887754   35689999


Q ss_pred             eccCCCCh
Q 044211          112 EYINCGSL  119 (292)
Q Consensus       112 e~~~~gsL  119 (292)
                      |+++++++
T Consensus        93 E~i~G~~~  100 (297)
T PRK10593         93 ERLRGVSV  100 (297)
T ss_pred             eccCCEec
Confidence            99998765

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.77  E-value=0.00068  Score=56.65  Aligned_cols=139  Identities=10%  Similarity=-0.011  Sum_probs=77.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCc-cceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCI-FKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|-...+|+...         +++.+++|..........-...+|..+++.+....+ .++++..    ..++|+||++|
T Consensus         6 ~G~tn~~y~~~~---------~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~----~~~~v~e~i~G   72 (256)
T TIGR02721         6 GGLTNRSWRIEH---------PGISFVWRPQSPVCKALGVDRQREYQILQALSALGLAPKPILVN----EHWLLVEWLEG   72 (256)
T ss_pred             CcCcCCeEEEEe---------CCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCCCCceEEEe----CCEEEEEeccC
Confidence            455678898874         777899998654322211124678888888854333 3444443    24789999987


Q ss_pred             CChh--------------HHhhhhCCCCCCCCCCCHHH-HHHHHHH---------HHHHHHHhhc-----CCCCCcccCC
Q 044211          117 GSLA--------------DRIRIHHTPQPQHEPLLLTH-RLKIAMD---------IANAIAYLHV-----GFPRPVIFRD  167 (292)
Q Consensus       117 gsL~--------------~~l~~~~~~~~~~~~l~~~~-~~~i~~~---------i~~~l~~lh~-----~~~~~i~H~d  167 (292)
                      ..+.              +.+++.+.......+++... +..+..+         +..-+..+-.     .....++|+|
T Consensus        73 ~~~~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~D  152 (256)
T TIGR02721        73 EVITLDQFVALDLLLELAALLHQLHSQPRFGYPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLHMD  152 (256)
T ss_pred             cccccccccCchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeeecCC
Confidence            5543              22233222221222222211 1111111         1111111110     1123579999


Q ss_pred             CCCCceEecCCCceEEeeccccc
Q 044211          168 FKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       168 lk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +.|.||++++++ +.+.||..+.
T Consensus       153 l~~~Nil~~~~~-~~lIDwE~a~  174 (256)
T TIGR02721       153 VHAYNLVVTPQG-LKLIDWEYAS  174 (256)
T ss_pred             CCcCcEEEeCCC-CEEEeccccC
Confidence            999999999876 7899998875

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.64  E-value=0.0011  Score=54.75  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=26.8

Q ss_pred             CCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          160 PRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ...++|+|+.+.|++++.++..-|.||+.+..
T Consensus       163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~  194 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCLGV  194 (235)
T ss_pred             CceEEeCCCCCCcEEEECCCEEEEEeCcccCc
Confidence            44589999999999999776677999998753

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.63  E-value=0.00012  Score=67.29  Aligned_cols=136  Identities=15%  Similarity=0.146  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCccc--------hhhhhcccccccccccC
Q 044211          145 AMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHI--------SELLSGLRAFDLARLNE  216 (292)
Q Consensus       145 ~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~~~--------~~~~~g~~~y~~~~~~~  216 (292)
                      +.+++.|+.|+|.  ..+++|+++.|++|.++.++.-||+.|+++....++....        .....-...|.++|+..
T Consensus       105 l~~v~dgl~flh~--sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  105 LGNVADGLAFLHR--SAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhcccchhhhhcc--CcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            4566699999997  6789999999999999999999999999987665421111        01111223444444433


Q ss_pred             CC-----------CeE--EEc-cchhhhhhccchhhh-cccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHH
Q 044211          217 DD-----------GYV--VLL-DHIKKYFEEDRLNEI-IDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDV  280 (292)
Q Consensus       217 ~~-----------Gvi--el~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el  280 (292)
                      ..           |++  -+. ++.+-+...+..... ......+........+.+.++.+=+.+.+..++.-|| +.++
T Consensus       183 ~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~~~rp~~~~l  262 (700)
T KOG2137|consen  183 GTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGDSAVRPTLDLL  262 (700)
T ss_pred             cccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhcccccccccccccCcHHHHHHHHHHhcCCcccCcchhhh
Confidence            22           777  444 443322222111111 1111111111111135677899999999999999999 7766


Q ss_pred             HH
Q 044211          281 AK  282 (292)
Q Consensus       281 ~~  282 (292)
                      ..
T Consensus       263 ~~  264 (700)
T KOG2137|consen  263 LS  264 (700)
T ss_pred             hc
Confidence            53

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.46  E-value=0.0036  Score=53.45  Aligned_cols=141  Identities=16%  Similarity=0.178  Sum_probs=79.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCC--ccceeee------eecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRC--IFKLIGC------CLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~~------~~~~~~~~l  109 (292)
                      .|....+|+...         ++..+++|.....   ....+..|+.++..+.+.+  +.+++..      ....+..++
T Consensus        24 ~G~~n~~y~v~~---------~~~~~vLr~~~~~---~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~   91 (296)
T cd05153          24 AGIENTNYFVTT---------DSGRYVLTLFEKV---SAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAA   91 (296)
T ss_pred             CccccceEEEEe---------CCCcEEEEEcCCC---ChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEE
Confidence            455578998876         5557999987652   2355677888888874332  3444332      122345689


Q ss_pred             EEeccCCCChh-----------HHhhhhCCCCC---CC----CCCCHHHH----------HHHHHHHHHHHHHhhc----
Q 044211          110 VFEYINCGSLA-----------DRIRIHHTPQP---QH----EPLLLTHR----------LKIAMDIANAIAYLHV----  157 (292)
Q Consensus       110 v~e~~~~gsL~-----------~~l~~~~~~~~---~~----~~l~~~~~----------~~i~~~i~~~l~~lh~----  157 (292)
                      |++|++|..+.           ..+.+.+....   ..    ....+...          ......+..++.++..    
T Consensus        92 l~~~i~G~~~~~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  171 (296)
T cd05153          92 LVEFLAGEHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLADELARQDAFDPS  171 (296)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccCHHHHHHHHHHHHHHHhhhhh
Confidence            99999876542           12222111100   00    00111100          0011112333444431    


Q ss_pred             CCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          158 GFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       158 ~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      ....+++|+|+.|.|+++++++...|.||+.+.
T Consensus       172 ~~~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         172 DLPRGVIHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             cCCCcCCccCcCcccEEEeCCceEEEeehhhhc
Confidence            113579999999999999998777899998875

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.44  E-value=0.0051  Score=50.57  Aligned_cols=139  Identities=17%  Similarity=0.142  Sum_probs=76.2

Q ss_pred             cCCCeeEeeecCCCCccCccC--CeEEEEEeecCCCcchHHHHHHHHHHHHhcCC-CCccceeeeeecCCcceEEEeccC
Q 044211           39 KNGYKLYEGFFQNRPISGFFQ--ERPVSVMKFDESKPRTYDCCINNIVYASQMIH-RCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        39 G~~g~V~~~~~~~~~~~~~~~--~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      |-...+|+....        +  ++.|++|......... -...+|..+++.+.. .-..++++...    -.+++||++
T Consensus         9 G~tN~~~~v~~~--------~~~~~~~vlR~~~~~~~~~-~d~~~E~~~~~~l~~~gl~P~v~~~~~----~~~l~e~i~   75 (235)
T cd05157           9 GITNKLVKVSNK--------EDNQDAVLVRVYGNKTELI-IDRERELRIHKLLSKHGLAPKLYATFQ----NGLIYEFIP   75 (235)
T ss_pred             cccceEEEEEcC--------CCCCCeEEEEEccCCccce-ecHHHHHHHHHHHHhCCCCCeEEEEeC----CcEEEEeeC
Confidence            445688988763        3  5789999876432211 223478888888853 33345554332    248999998


Q ss_pred             CCChh--------------HHhhhhCCCCCCC-------CCCC-HHHHHHHH-------------------------HHH
Q 044211          116 CGSLA--------------DRIRIHHTPQPQH-------EPLL-LTHRLKIA-------------------------MDI  148 (292)
Q Consensus       116 ~gsL~--------------~~l~~~~~~~~~~-------~~l~-~~~~~~i~-------------------------~~i  148 (292)
                      |.++.              ..+++.+......       .... +..+..+.                         .+.
T Consensus        76 G~~l~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  155 (235)
T cd05157          76 GRTLEPEDLRNPKIYRLIARELAKLHSIKPPEAISSPGTPKPILWPTIRKWINLVPTEFKKPEKFQKKTKAISFEQLRDE  155 (235)
T ss_pred             CCcCCHHHccChHHHHHHHHHHHHHhcccccccccccCCCCCcHHHHHHHHHHHhHHhhccccchhhhhccccHHHHHHH
Confidence            76542              1222222111111       1111 11211211                         111


Q ss_pred             HHHHHH-hhcC-CCCCcccCCCCCCceEecC-CCceEEeeccccc
Q 044211          149 ANAIAY-LHVG-FPRPVIFRDFKLSNILFNE-ENVAKLFDFSFSI  190 (292)
Q Consensus       149 ~~~l~~-lh~~-~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~a~  190 (292)
                      +..+.. +-.. ....++|+|+.+.||+++. ++.+.+.||..|.
T Consensus       156 ~~~l~~~l~~~~~~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         156 ISWLKELLSALNSPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             HHHHHHHhcccCCCEEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            111211 1110 1346899999999999998 5789999998775

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=97.41  E-value=0.0017  Score=56.94  Aligned_cols=178  Identities=15%  Similarity=0.079  Sum_probs=108.6

Q ss_pred             ceEEEeccCCC-ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEee
Q 044211          107 PILVFEYINCG-SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFD  185 (292)
Q Consensus       107 ~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~D  185 (292)
                      .-++|..+++. -+..+... .....+.....|...++.+..++.+.+-||   ..|..-+|++++|+|+++++.+.|.|
T Consensus        85 iGflmP~v~g~~pI~~~y~p-~tRRqs~P~~~w~fllrvaRnlA~aFA~lH---~~Gh~vGDVn~~~~lVsd~~~V~LVd  160 (637)
T COG4248          85 IGFLMPKVSGKEPIHMIYSP-ATRRQSYPHCAWDFLLRVARNLASAFATLH---EHGHVVGDVNQNSFLVSDDSKVVLVD  160 (637)
T ss_pred             eEEecccCCCccchhhhcCc-hhhcccCCccccHHHHHHHHHHHHHHHHHH---hcCCcccccCccceeeecCceEEEEc
Confidence            55777776642 23333321 111245677889999999999999999999   88888899999999999999999987


Q ss_pred             cccccccCCCCccchhhhhcccccccccccC-CC---------------CeE--EEc-cchhhhhhcc-------chh--
Q 044211          186 FSFSISIPEGETHISELLSGLRAFDLARLNE-DD---------------GYV--VLL-DHIKKYFEED-------RLN--  237 (292)
Q Consensus       186 fg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~-~~---------------Gvi--el~-~~~~~~~~~~-------~~~--  237 (292)
                      -..-....++..+  --.+|...|.+||... ++               ||+  +++ |.+.|+....       ...  
T Consensus       161 sDsfqi~~ng~~~--~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~  238 (637)
T COG4248         161 SDSFQINANGTLH--LCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETD  238 (637)
T ss_pred             ccceeeccCCceE--ecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhh
Confidence            5332211121111  1234556665555544 22               566  666 6553333211       000  


Q ss_pred             -------hh--cccccccCCCCCCchHHHHHHHHHHhHhcCCC--CCCCC-HHHHHHHHHHhhhc
Q 044211          238 -------EI--IDPLIMGDRSCSGNQQQLQAFAHLIFECVNES--PVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       238 -------~~--~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~d--P~~RP-~~el~~~L~~l~~~  290 (292)
                             ..  -.......+..++..-.++.+.-+..+|+...  +.-|| +.--+..|.+++++
T Consensus       239 Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al~~~  303 (637)
T COG4248         239 IAHGRFAYASDQRRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAKAWVAALDALRQQ  303 (637)
T ss_pred             hhcceeeechhccCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHh
Confidence                   00  01112222222222455788999999999753  45799 88888888777654

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.40  E-value=0.0077  Score=53.46  Aligned_cols=69  Identities=13%  Similarity=-0.035  Sum_probs=49.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCC-eEEEEEeecCC----C---cchHHHHHHHHHHHHhcC---CCCccceeeeeecCCc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQE-RPVSVMKFDES----K---PRTYDCCINNIVYASQMI---HRCIFKLIGCCLETQI  106 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~-~~vaiK~~~~~----~---~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~~~  106 (292)
                      .|.+..||++...        +| +.|+||.-...    .   +-..++...|...|+.+.   -.++.+++.+.  ...
T Consensus        36 gGn~N~VyrV~~~--------~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~D--~~~  105 (401)
T PRK09550         36 DGNLNLVFRVSDT--------EGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHYD--EEL  105 (401)
T ss_pred             CCceEEEEEEEeC--------CCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCC
Confidence            6889999999986        55 58999984321    1   224567788888888873   24567777663  355


Q ss_pred             ceEEEeccCC
Q 044211          107 PILVFEYINC  116 (292)
Q Consensus       107 ~~lv~e~~~~  116 (292)
                      .++||||+++
T Consensus       106 ~~lVME~L~~  115 (401)
T PRK09550        106 AVTVMEDLSD  115 (401)
T ss_pred             CEEEEecCCC
Confidence            7899999875

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.38  E-value=0.016  Score=49.74  Aligned_cols=142  Identities=15%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCC--ccceeeee------ecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRC--IFKLIGCC------LETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~~~------~~~~~~~l  109 (292)
                      .|....+|+...         ++..+++|..+...  ....+..|..++..|....  +.+++...      ...+..++
T Consensus        32 ~G~~n~~y~v~t---------~~~~~vLK~~~~~~--~~~~i~~e~~~l~~L~~~g~pvp~~i~t~~g~~~~~~~g~~~~  100 (307)
T TIGR00938        32 EGVENSNYLLTT---------DVGRYILTLYEKRV--KAEELPFFLALTTHLAARGLPVPKPVKSRDGRQLSTLAGKPAC  100 (307)
T ss_pred             CccccceEEEEe---------CCCcEEEEEecCCC--CHHHHHHHHHHHHHHHHCCCCCCccccCCCCCeehhcCCeEEE
Confidence            444468898775         44468889875532  2344556777777774222  33443321      11345689


Q ss_pred             EEeccCCCChh-----------HHhhhhCCCCCC---CCC----CC-HHHHH------------HHHHHHHHHHHHhhc-
Q 044211          110 VFEYINCGSLA-----------DRIRIHHTPQPQ---HEP----LL-LTHRL------------KIAMDIANAIAYLHV-  157 (292)
Q Consensus       110 v~e~~~~gsL~-----------~~l~~~~~~~~~---~~~----l~-~~~~~------------~i~~~i~~~l~~lh~-  157 (292)
                      +++|++|..+.           ..+.+.+.....   ...    .+ +....            .....+...+.++.. 
T Consensus       101 l~e~i~G~~~~~~~~~~~~~~G~~LA~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~  180 (307)
T TIGR00938       101 LVEFLQGLSVGRPTAMHCRPVGEVLAWMHLAGAHFPENRKNSLRLEAWHILAEKCFEAAPQLEAHMGAELDKELDYLDKF  180 (307)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHHhh
Confidence            99999874432           222221111110   000    00 00000            001122334444431 


Q ss_pred             ---CCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          158 ---GFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       158 ---~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                         ....+++|+|+.+.|++++.++...+.||+.+.
T Consensus       181 ~~~~~~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       181 WPRDLPRGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             hhhcCCCccCCCCCCcCcEEEECCceEEEeeccccc
Confidence               114689999999999999988777899998874

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.23  E-value=0.0049  Score=49.15  Aligned_cols=134  Identities=19%  Similarity=0.174  Sum_probs=86.8

Q ss_pred             CCCccccccHHH--HHHHhhC-ccCC-CeeEeeecCCCCccCccCCeEEEEEeec---CCCc------------------
Q 044211           19 KYNPIRSFCAEE--LKTTHNA-IKNG-YKLYEGFFQNRPISGFFQERPVSVMKFD---ESKP------------------   73 (292)
Q Consensus        19 ~~~~~~~~~~~~--~~~~~~~-~G~~-g~V~~~~~~~~~~~~~~~~~~vaiK~~~---~~~~------------------   73 (292)
                      ..+....|+...  ++...-. .|.- |.||+++.         .|+.||+|.+.   ...+                  
T Consensus        25 ~gPKL~~F~~h~~~I~flefLg~g~~~~~V~kv~I---------~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (207)
T PF13095_consen   25 PGPKLEPFTHHGDDIEFLEFLGHGSHDGYVFKVEI---------DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPA   95 (207)
T ss_pred             CCCCcCCcCCCCCcEeeeeecCCCCceeEEEEEEE---------CCeEEEEEEeeccccCCCccccccccccccccchhh
Confidence            456666676521  0000000 6777 99999999         89999999932   1111                  


Q ss_pred             chHHHHHHHHHHHHhcC---CCCc--cceeeeeecCC------------------cceEEEeccCCCChhHHhhhhCCCC
Q 044211           74 RTYDCCINNIVYASQMI---HRCI--FKLIGCCLETQ------------------IPILVFEYINCGSLADRIRIHHTPQ  130 (292)
Q Consensus        74 ~~~~~~~~e~~~l~~l~---h~ni--v~~~~~~~~~~------------------~~~lv~e~~~~gsL~~~l~~~~~~~  130 (292)
                      .....|..|++...+|+   +.++  ++.+||..-..                  ...||-||.+...            
T Consensus        96 ~y~~PF~~ECRAfgRLke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~------------  163 (207)
T PF13095_consen   96 HYADPFNCECRAFGRLKEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP------------  163 (207)
T ss_pred             hhcChHHHHHHhhHHHHhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc------------
Confidence            12245889999998885   3455  88999884321                  1245666655411            


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          131 PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       131 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                          .+....    +.++.+-|..+|   ..+|+-+|+++.|..     .-+|+|||.+
T Consensus       164 ----~~~~~~----~~~~~~dl~~~~---k~gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  164 ----PLQIRD----IPQMLRDLKILH---KLGIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             ----ccchhH----HHHHHHHHHHHH---HCCeeeccCcccccc-----CCEEEecccC
Confidence                233333    456666788899   999999999999876     3378999875

>PRK05231 homoserine kinase; Provisional

Probab=97.20  E-value=0.017  Score=49.95  Aligned_cols=31  Identities=35%  Similarity=0.664  Sum_probs=26.7

Q ss_pred             CCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          160 PRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      ..+++|+|+.|.||+++.+...-+.||+.+.
T Consensus       186 p~~liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        186 PRGVIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             CcccCCCCCCCCcEEEECCceEEEEeccccc
Confidence            4579999999999999977666899998875

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.07  E-value=0.013  Score=50.23  Aligned_cols=147  Identities=18%  Similarity=0.123  Sum_probs=79.5

Q ss_pred             cCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCC-ccceeeeeecCCcceEEEeccCCC
Q 044211           39 KNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRC-IFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        39 G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      |-...+|+.....-. .....++.+++|...... .......+|..++..+.... ..++++++.    -.+|+||++|.
T Consensus         9 GltN~~y~v~~~~~~-~~~~~~~~~vlRi~~~~~-~~~~~r~~E~~~~~~l~~~g~~P~~~~~~~----~~~v~e~i~G~   82 (302)
T cd05156           9 GLTNAVYKVSLPDED-ALSDEPRKVLLRVYGQSV-ELLIDRERELVVFARLSERNLGPKLYGIFP----NGRIEEFIPSR   82 (302)
T ss_pred             cccceeEEEEcCCcc-cccCCCCeEEEEEecCCC-cceechHHHHHHHHHHHhCCCCCceEEEeC----CCchhheeCCC
Confidence            334578887763100 000125789999976543 22334668888888885332 345565553    23688998876


Q ss_pred             ChhH--------------HhhhhCCCCCC--CC---CCC--HHHHHH--------------------------HHHHHHH
Q 044211          118 SLAD--------------RIRIHHTPQPQ--HE---PLL--LTHRLK--------------------------IAMDIAN  150 (292)
Q Consensus       118 sL~~--------------~l~~~~~~~~~--~~---~l~--~~~~~~--------------------------i~~~i~~  150 (292)
                      ++..              .+++.+.....  ..   ..+  +..+..                          +...+..
T Consensus        83 ~l~~~~~~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (302)
T cd05156          83 TLTTEELRDPDISAEIARRMAKLHSIVVPLSPEERDLTPAIWKLLKQWLDLAETVIEIVDSDSEKLLEVELSLFLEDEAK  162 (302)
T ss_pred             cCCHhHcCCcHHHHHHHHHHHHhhCCCCCCCCCcCcccchHHHHHHHHHHHhhhhhhhcccchhhhhhhhHHHHHHHHHH
Confidence            5532              22221211111  00   111  111101                          1122222


Q ss_pred             HHHHhhc------CCCCCcccCCCCCCceEecCC----CceEEeecccccc
Q 044211          151 AIAYLHV------GFPRPVIFRDFKLSNILFNEE----NVAKLFDFSFSIS  191 (292)
Q Consensus       151 ~l~~lh~------~~~~~i~H~dlk~~nili~~~----~~~kl~Dfg~a~~  191 (292)
                      -+..+-.      .....+.|+|+.+.||+++++    +.+.+.||..|..
T Consensus       163 ~~~~l~~~~~~~~~~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~  213 (302)
T cd05156         163 YLRFLLESTSEESGSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASY  213 (302)
T ss_pred             HHHHHHhhccCCCCCCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCC
Confidence            3333431      124578999999999999985    7899999988853

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=97.02  E-value=0.0077  Score=51.13  Aligned_cols=68  Identities=15%  Similarity=-0.005  Sum_probs=44.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC---CCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI---HRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|....+|+..-         +++.+.+|.-...   ....|..|..-|+.|.   --.+.+++++....+..++|+||+
T Consensus        27 GG~i~~a~~~~~---------~~~~~FvK~~~~~---~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLlle~l   94 (288)
T PF03881_consen   27 GGDINEAYRLDT---------DGGSYFVKVNSES---GRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLLEFL   94 (288)
T ss_dssp             -SSSSEEEEEET---------TS-EEEEEEEEGG---GCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEEE--
T ss_pred             CCChhheEEEEC---------CCccEEEEecChh---hHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEEEee
Confidence            556678888774         8899999997632   2345778888888883   345778888887777789999998


Q ss_pred             CCC
Q 044211          115 NCG  117 (292)
Q Consensus       115 ~~g  117 (292)
                      +.+
T Consensus        95 ~~~   97 (288)
T PF03881_consen   95 EMG   97 (288)
T ss_dssp             ---
T ss_pred             cCC
Confidence            765

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=96.93  E-value=0.00068  Score=62.18  Aligned_cols=152  Identities=14%  Similarity=0.013  Sum_probs=103.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCC-ccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRC-IFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+++.+++....        ..+....+.+...     ....-++++|.+++||| .+..++-+...+..+++++++..
T Consensus       252 K~altknpKkRpt--------aeklL~h~fvs~~-----l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~  318 (829)
T KOG0576|consen  252 KGALTKNPKKRPT--------AEKLLQHPFVSQT-----LSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICST  318 (829)
T ss_pred             HHHhcCCCccCCC--------hhhheeceeeccc-----hhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcC
Confidence            6777777777664        3333334444333     33556889999999999 66777777777788999999987


Q ss_pred             C-ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          117 G-SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       117 g-sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      + |....+      ....-.+...+...+...-+.+++++|   .-.-+|+|    ||+.++ +..+..||+.+..+...
T Consensus       319 ~rs~~~~~------~~se~~~~~~~~~~~~r~et~~l~~l~---~~~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~  384 (829)
T KOG0576|consen  319 GRSSALEM------TVSEIALEQYQFAYPLRKETRPLAELH---SSYKVHRD----NILGSE-EEVKLLDFAVPPQLTRT  384 (829)
T ss_pred             CccccccC------ChhhHhhhhhhhhhhhhhhcccccccc---cccccCcc----cccccc-cccccccccCCcccCcc
Confidence            6 332222      012233444555667777888999999   55567888    776665 57899999998877554


Q ss_pred             CccchhhhhcccccccccccCCC
Q 044211          196 ETHISELLSGLRAFDLARLNEDD  218 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~  218 (292)
                      .  ......+++.++++++....
T Consensus       385 ~--~~~t~~~~~~~~~pev~~~~  405 (829)
T KOG0576|consen  385 M--KPRTAIGTPEPLAPEVIQEN  405 (829)
T ss_pred             c--ccccCCCCCCCCCchhhccc
Confidence            3  34556788888888855544

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=96.93  E-value=0.013  Score=50.45  Aligned_cols=30  Identities=27%  Similarity=0.522  Sum_probs=25.8

Q ss_pred             CCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          160 PRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      ..+++|+|+.+.||+++. +.+.|.||+.+.
T Consensus       186 ~~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       186 IRGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             cCceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            367899999999999998 578899998764

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=96.90  E-value=0.0061  Score=49.14  Aligned_cols=104  Identities=14%  Similarity=0.059  Sum_probs=65.0

Q ss_pred             eEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHH
Q 044211           61 RPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT  139 (292)
Q Consensus        61 ~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~  139 (292)
                      -+..+|++...... ...-|.++.++++++.  .|+++..  .....+-+++|+|.-...                ....
T Consensus        86 G~L~lKKi~slp~~~~~~~y~nky~v~Armh--GilrL~N--Dn~~~yGvIlE~Cy~~~i----------------~~~N  145 (308)
T PF07387_consen   86 GPLFLKKIRSLPCCINDALYFNKYRVFARMH--GILRLKN--DNNYKYGVILERCYKIKI----------------NFSN  145 (308)
T ss_pred             chhhhhhccCCCcccchhhhhhhhhHHHHhh--heeEeec--CCCceeEEEEeeccCccc----------------chhH
Confidence            45566666543332 3345678888888763  2344431  122345688999864211                1111


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       140 ~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                         .+..+ .++|.-.|.. ..+.+|+|..|+||+-++.|.+||.|.+.-
T Consensus       146 ---~i~ag-i~~L~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~~L  190 (308)
T PF07387_consen  146 ---FITAG-IKDLMDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPVCL  190 (308)
T ss_pred             ---HHHHh-HHHHHHhhcc-CCCeecCCCChhheeecCCCCEEecChhhh
Confidence               11111 3567778855 678999999999999999999999998653

The function of this family is unknown.

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=96.90  E-value=0.015  Score=49.82  Aligned_cols=133  Identities=12%  Similarity=0.154  Sum_probs=74.3

Q ss_pred             CCeEEEEEeecC--CCcchHHHHHHHHHHHHhcCC--CCccceeeeeecCC--cceEEEeccCCC---------------
Q 044211           59 QERPVSVMKFDE--SKPRTYDCCINNIVYASQMIH--RCIFKLIGCCLETQ--IPILVFEYINCG---------------  117 (292)
Q Consensus        59 ~~~~vaiK~~~~--~~~~~~~~~~~e~~~l~~l~h--~niv~~~~~~~~~~--~~~lv~e~~~~g---------------  117 (292)
                      ++++++++ ...  ..........+|+.+++.+.-  --+...++.|....  ..|.||+|++|.               
T Consensus        47 ~~~~~vlR-~P~~~~~~~~~~~~~re~~~i~~l~~~~vP~p~~~~~~~~~~~g~pf~v~~~veGe~~~~~~~~~~~~~~~  125 (321)
T COG3173          47 TGQKYVLR-KPPRGDPVESAHDEKREYRVIAALLDVDVPVPRAFGLCGEGYLGTPFYVMEWVEGEVVWSALPPESLGRQF  125 (321)
T ss_pred             CCceEEEe-cCCccccchhhhHHHhHHHHHHHhcCCCCCCcccccccccCCCCCceEEEEEecceeccCcCCcccchHHH
Confidence            56778888 331  223344566778888888743  23456677777655  679999999862               


Q ss_pred             ---ChhHHhhhhCCCCCCCC-------CCCHHHHHHHHHHH--------------HHHHHHhhcC-----CCCCcccCCC
Q 044211          118 ---SLADRIRIHHTPQPQHE-------PLLLTHRLKIAMDI--------------ANAIAYLHVG-----FPRPVIFRDF  168 (292)
Q Consensus       118 ---sL~~~l~~~~~~~~~~~-------~l~~~~~~~i~~~i--------------~~~l~~lh~~-----~~~~i~H~dl  168 (292)
                         +|.++++..+.....+.       .....++.++..+.              ..-..+++..     ....++|+|+
T Consensus       126 ~~~~l~~~La~LH~ida~~~~~~g~~~~~~~rql~~~~~~~~~~~~~~~~~~p~~~~~~~Wl~~~~p~~~~~~~lvHGD~  205 (321)
T COG3173         126 ALDALADFLAELHSIDAAGLPDPGKPNAYRGRQLARWDDEYRRAKKELGGRIPLADRLIKWLEANRPPWAGPPVLVHGDY  205 (321)
T ss_pred             HHHHHHHHHHHHhCCCCcCCCCCCccCccccchhhHHHHHHHHHHHhccCCCchHHHHHHHHHhcCCCcCCCceeeeCCc
Confidence               22223322211110000       00111111111111              1112233211     1336899999


Q ss_pred             CCCceEecCCCceEEeeccccccc
Q 044211          169 KLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       169 k~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      .+.|++++..+-+-+.||+++..-
T Consensus       206 ~~gNlii~~~~~~gVlDwe~~~lG  229 (321)
T COG3173         206 RPGNLIIDPGRPTGVLDWELATLG  229 (321)
T ss_pred             ccCCEEEeCCCeeEEEeccccccC
Confidence            999999998877999999998644

>PLN02236 choline kinase

Probab=96.68  E-value=0.047  Score=47.75  Aligned_cols=146  Identities=16%  Similarity=0.168  Sum_probs=79.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCc-cceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCI-FKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|-.-.+|+..+...   ....++.|++|..........+ -.+|..+++.+...++ .++++.+...    .|.||+++
T Consensus        46 gGlTN~~y~v~~~~~---~~~~~~~~v~Ri~g~~t~~~id-R~~E~~~~~~l~~~gl~P~~~~~~~~g----~v~efi~g  117 (344)
T PLN02236         46 GAMTNEVFQIKWPTK---EGNLGRKVLVRIYGEGVELFFD-RDDEIRTFECMSRHGQGPRLLGRFPNG----RVEEFIHA  117 (344)
T ss_pred             CcccceeEEEEeCCC---CCCCCCeEEEEEccCCCCeeec-hHHHHHHHHHHHHcCCCCceEEEECCc----eEEEeeCC
Confidence            455678898875210   0002368999988665333333 3678888888854433 3566665322    58999876


Q ss_pred             CChh--------------HHhhhhCCCCCC-CC-CCCHHHHHHHHHHH-----------------HHHHHH----hhc-C
Q 044211          117 GSLA--------------DRIRIHHTPQPQ-HE-PLLLTHRLKIAMDI-----------------ANAIAY----LHV-G  158 (292)
Q Consensus       117 gsL~--------------~~l~~~~~~~~~-~~-~l~~~~~~~i~~~i-----------------~~~l~~----lh~-~  158 (292)
                      .++.              ..+++.+..... .. ...+..+..+..++                 ...+..    +.. .
T Consensus       118 ~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~L~~~~~~~~  197 (344)
T PLN02236        118 RTLSAADLRDPEISALIAAKLREFHSLDMPGPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLEDEINLLEKELSGDD  197 (344)
T ss_pred             CCCCHHHcCChHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHHHHHHHHHHHhcccC
Confidence            5553              112222221111 11 11122222332111                 111111    111 1


Q ss_pred             CCCCcccCCCCCCceEecC-CCceEEeecccccc
Q 044211          159 FPRPVIFRDFKLSNILFNE-ENVAKLFDFSFSIS  191 (292)
Q Consensus       159 ~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~a~~  191 (292)
                      ....+.|+|+++.||++++ ++.+.+.||..+..
T Consensus       198 ~~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~  231 (344)
T PLN02236        198 QEIGFCHNDLQYGNIMIDEETRAITIIDYEYASY  231 (344)
T ss_pred             CCceEEeCCCCcCcEEEeCCCCcEEEEeehhccc
Confidence            1346799999999999986 47899999988753

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=96.62  E-value=0.023  Score=50.00  Aligned_cols=61  Identities=18%  Similarity=0.122  Sum_probs=44.5

Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE  178 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~  178 (292)
                      .++-+|.++-++..+++        ....+++...+++.--+.|+-.+-.  -.+++|.|+.|.||++-.+
T Consensus       321 vl~E~~~~Gl~v~~~v~--------~~~~pe~l~kkva~lg~~AllkMl~--vDNFvHaDlHPGNVlirf~  381 (565)
T KOG1236|consen  321 VLVETYERGLSVLRFVK--------WKSQPEALVKKVAKLGVNALLKMLI--VDNFVHADLHPGNVLIRFN  381 (565)
T ss_pred             eeeeeccccccHHhhhh--------cccChHHHHHHHHHHHHHHHHHHHH--hhcceecccCCCcEEEEec
Confidence            56667888889998883        3445555666666666677665543  4689999999999999644

>PLN02756 S-methyl-5-thioribose kinase

Probab=96.28  E-value=0.11  Score=46.29  Aligned_cols=68  Identities=6%  Similarity=-0.106  Sum_probs=45.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC----CCc---chHHHHHHHHHHHHhcC---CCCccceeeeeecCCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE----SKP---RTYDCCINNIVYASQMI---HRCIFKLIGCCLETQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~----~~~---~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~~~~  107 (292)
                      .|....||+...         .++.|+||.-..    .+.   ....+-..|...|+.+.   ..++.+++.++.  +..
T Consensus        42 gGn~N~VyrV~~---------~~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de--d~~  110 (418)
T PLN02756         42 DGNLNFVYIVVS---------SSGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR--TMA  110 (418)
T ss_pred             CCceeeEEEEEc---------CCccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC--CCC
Confidence            677789999876         455799998541    111   13344455666676653   347778888876  456


Q ss_pred             eEEEeccCC
Q 044211          108 ILVFEYINC  116 (292)
Q Consensus       108 ~lv~e~~~~  116 (292)
                      +++||++++
T Consensus       111 vlvME~L~~  119 (418)
T PLN02756        111 LIGMRYLEP  119 (418)
T ss_pred             EEEEeecCC
Confidence            789999975

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=96.26  E-value=0.016  Score=49.52  Aligned_cols=137  Identities=15%  Similarity=0.151  Sum_probs=86.4

Q ss_pred             cccHHHHHHHhhC-----------ccCCCeeEeeecCCCCccCccCCeEEEEEeec--CCCc---------------chH
Q 044211           25 SFCAEELKTTHNA-----------IKNGYKLYEGFFQNRPISGFFQERPVSVMKFD--ESKP---------------RTY   76 (292)
Q Consensus        25 ~~~~~~~~~~~~~-----------~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~--~~~~---------------~~~   76 (292)
                      .+++-.++...+.           -|-=+.||.+-..        .|++.++|.=.  ..+.               ..+
T Consensus        78 GyDyLAlktL~~R~~v~svGnqIGVGKESDIY~v~d~--------~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sW  149 (465)
T KOG2268|consen   78 GYDYLALKTLSNRGSVESVGNQIGVGKESDIYVVADE--------EGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSW  149 (465)
T ss_pred             cchHHHHHHHHhcchhhhhccccccccccceEEEecC--------CCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccch
Confidence            4555555555543           4555778888886        89999998621  1100               001


Q ss_pred             -----HHHHHHHHHHHhcC-CC-CccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHH
Q 044211           77 -----DCCINNIVYASQMI-HR-CIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIA  149 (292)
Q Consensus        77 -----~~~~~e~~~l~~l~-h~-niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~  149 (292)
                           -...+|+..|+.|. |. -|.+.+++    +..++|||++.+-.|.+.-          ...+...+..-+..+ 
T Consensus       150 lyLSRlaa~kEfafmkaL~e~gfpVPkpiD~----~RH~Vvmelv~g~Pl~~v~----------~v~d~~~ly~~lm~~-  214 (465)
T KOG2268|consen  150 LYLSRLAATKEFAFMKALYERGFPVPKPIDH----NRHCVVMELVDGYPLRQVR----------HVEDPPTLYDDLMGL-  214 (465)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCCCcccc----cceeeHHHhhcccceeeee----------ecCChHHHHHHHHHH-
Confidence                 12456888888874 32 23344433    4567899999886665433          223334444433333 


Q ss_pred             HHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          150 NAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       150 ~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                        +.-|.   ..|+||+|.+-=||++++++.++++||=-.
T Consensus       215 --Iv~la---~~GlIHgDFNEFNimv~dd~~i~vIDFPQm  249 (465)
T KOG2268|consen  215 --IVRLA---NHGLIHGDFNEFNIMVKDDDKIVVIDFPQM  249 (465)
T ss_pred             --HHHHH---HcCceecccchheeEEecCCCEEEeechHh
Confidence              34445   789999999999999999999999999443

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=96.06  E-value=0.13  Score=44.17  Aligned_cols=31  Identities=16%  Similarity=0.329  Sum_probs=27.8

Q ss_pred             CCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          160 PRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      ..+++|+|+.+.|++++.++.+.+.||..+.
T Consensus       195 ~~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~  225 (309)
T TIGR02904       195 RTVLVHGKLSLSHFLYDETRGGYFINFEKAS  225 (309)
T ss_pred             ceeeeCCCCcHHhEEEcCCCCEEEEEhhhcc
Confidence            4579999999999999999899999998875

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.03  E-value=0.13  Score=44.90  Aligned_cols=68  Identities=15%  Similarity=0.042  Sum_probs=43.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCC-eEEEEEeec----CC---CcchHHHHHHHHHHHHhcC--CC-CccceeeeeecCCc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQE-RPVSVMKFD----ES---KPRTYDCCINNIVYASQMI--HR-CIFKLIGCCLETQI  106 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~-~~vaiK~~~----~~---~~~~~~~~~~e~~~l~~l~--h~-niv~~~~~~~~~~~  106 (292)
                      -|....||++...        .+ +.|+||.-.    ..   -+-..++..-|...|+...  -| .+.+++.+  ++..
T Consensus         5 dGnlN~VfrV~~~--------~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~--D~e~   74 (370)
T TIGR01767         5 DGNLNLVFHVYDQ--------EGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHF--DTEM   74 (370)
T ss_pred             CCceEEEEEEEcC--------CCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEE--cccc
Confidence            4667899999974        43 689999842    11   1334456677888887763  24 45555543  3445


Q ss_pred             ceEEEeccC
Q 044211          107 PILVFEYIN  115 (292)
Q Consensus       107 ~~lv~e~~~  115 (292)
                      ..+|||+++
T Consensus        75 ~~~vMEdL~   83 (370)
T TIGR01767        75 AVTVMEDLS   83 (370)
T ss_pred             ceehHhhCc
Confidence            668999874

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=96.01  E-value=0.056  Score=47.13  Aligned_cols=135  Identities=12%  Similarity=0.124  Sum_probs=89.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-----c----------------chHHH-----HHHHHHHHHhcCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-----P----------------RTYDC-----CINNIVYASQMIH   91 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-----~----------------~~~~~-----~~~e~~~l~~l~h   91 (292)
                      .|-=+-||.+.-.        +|..+|||+++..-     .                ...+.     ...|++.|.+|+.
T Consensus       154 TGKEANVYHat~~--------dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~  225 (520)
T KOG2270|consen  154 TGKEANVYHATEE--------DGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNN  225 (520)
T ss_pred             cCccceeEeeecC--------CCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHh
Confidence            5666778988886        99999999875320     0                11111     2357777888765


Q ss_pred             CCccceeeeeecCCcceEEEeccCCCCh-hHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCC
Q 044211           92 RCIFKLIGCCLETQIPILVFEYINCGSL-ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKL  170 (292)
Q Consensus        92 ~niv~~~~~~~~~~~~~lv~e~~~~gsL-~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~  170 (292)
                      ..|...--+..  ....+||+|+-.-.. .-.+        ....++...+..+-.+++.-|.-|..  ..+++|.||+-
T Consensus       226 aGIP~PePIlL--k~hVLVM~FlGrdgw~aPkL--------Kd~~ls~~ka~~~Y~~~v~~MR~lY~--~c~LVHADLSE  293 (520)
T KOG2270|consen  226 AGIPCPEPILL--KNHVLVMEFLGRDGWAAPKL--------KDASLSTSKARELYQQCVRIMRRLYQ--KCRLVHADLSE  293 (520)
T ss_pred             cCCCCCCceee--ecceEeeeeccCCCCcCccc--------ccccCChHHHHHHHHHHHHHHHHHHH--Hhceeccchhh
Confidence            55432111111  134689999853111 1111        34456677777888888888888886  56899999999


Q ss_pred             CceEecCCCceEEeecccccccC
Q 044211          171 SNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       171 ~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      =|+|+.+ |.++|.|.+-|....
T Consensus       294 fN~Lyhd-G~lyiIDVSQSVE~D  315 (520)
T KOG2270|consen  294 FNLLYHD-GKLYIIDVSQSVEHD  315 (520)
T ss_pred             hhheEEC-CEEEEEEccccccCC
Confidence            9999865 589999998886554

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=95.94  E-value=0.3  Score=41.31  Aligned_cols=33  Identities=18%  Similarity=0.268  Sum_probs=26.5

Q ss_pred             CCCcccCCCCCCceEecCCCc-eEEeeccccccc
Q 044211          160 PRPVIFRDFKLSNILFNEENV-AKLFDFSFSISI  192 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~~~-~kl~Dfg~a~~~  192 (292)
                      ...++|+|+.|.||++++++. .-|.||+.+..-
T Consensus       184 ~~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iG  217 (276)
T cd05152         184 HTVLVHGDLHPGHILIDEDARVTGLIDWTEAKVG  217 (276)
T ss_pred             CCeeEeCCCCCCcEEEeCCCCEEEEECcHhcccC
Confidence            345899999999999997554 569999987543

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PRK11768 serine/threonine protein kinase; Provisional

Probab=95.69  E-value=0.58  Score=40.59  Aligned_cols=139  Identities=12%  Similarity=0.089  Sum_probs=74.1

Q ss_pred             CCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCC--Ccccee---e--eeecCCcceEEEec
Q 044211           41 GYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHR--CIFKLI---G--CCLETQIPILVFEY  113 (292)
Q Consensus        41 ~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~--niv~~~---~--~~~~~~~~~lv~e~  113 (292)
                      -..||+....        ++..+++|..... ......+..|...+..|...  .++...   |  +...++..+.++++
T Consensus        38 eN~vy~v~~~--------~~~~~vlKv~r~~-~~~~~~i~~E~~~l~~L~~~gipv~~p~~~~G~~~~~~~g~~~~l~~~  108 (325)
T PRK11768         38 ENRVYQFGDE--------DGRRVVAKFYRPE-RWSDAQILEEHAFALELAEAEIPVVAPLAFNGQTLHEHQGFRFALFPR  108 (325)
T ss_pred             cceEEEEecC--------CCCEEEEEEcCcc-cCCHHHHHHHHHHHHHHHHCCCCCCCCccCCCCEEEEECCEEEEEEee
Confidence            3567777664        6778999987543 23456677788888777321  122211   1  11223456778888


Q ss_pred             cCCCC-----------hhHHhhhhCCCCC-----CCCCCCHHHH----------------------HHHHHHHHHHHHH-
Q 044211          114 INCGS-----------LADRIRIHHTPQP-----QHEPLLLTHR----------------------LKIAMDIANAIAY-  154 (292)
Q Consensus       114 ~~~gs-----------L~~~l~~~~~~~~-----~~~~l~~~~~----------------------~~i~~~i~~~l~~-  154 (292)
                      .+|..           +..++.+.+....     .+..++....                      ...+.++...+.- 
T Consensus       109 ~~G~~~~~~~~~~~~~lG~~LarlH~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~  188 (325)
T PRK11768        109 RGGRAPELDNLDQLEWVGRFLGRIHQVGAKRPFEHRPTLDLQEYGIEPRDWLLASDLIPSDLRPAYLAAADQLLAAVEAC  188 (325)
T ss_pred             eCCCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            87643           3344443222111     1122221110                      0112222111111 


Q ss_pred             hhc-CCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          155 LHV-GFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       155 lh~-~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +.. ....+++|+|+.+.||+++ + ...|.||+-+.
T Consensus       189 ~~~~~~~~~liHgD~h~~NvL~~-d-~~~iIDFDd~~  223 (325)
T PRK11768        189 WARGDVRLLRLHGDCHPGNILWR-D-GPHFVDLDDAR  223 (325)
T ss_pred             HhcCCCCccceecCCCchhcccc-C-CcEEEeCCCCC
Confidence            111 1145789999999999995 4 57899998875

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.64  E-value=0.0056  Score=54.41  Aligned_cols=29  Identities=21%  Similarity=0.389  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +....+.+++.-+|+.+|++|| +.++++.
T Consensus       521 e~A~~fsdFL~PmLef~PeKR~tA~~cl~h  550 (590)
T KOG1290|consen  521 EDAQQFSDFLSPMLEFDPEKRPTAAQCLKH  550 (590)
T ss_pred             HHHHHHHHHHHHHHhcCccccccHHHHhcC
Confidence            6778899999999999999999 9998853

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=95.62  E-value=0.18  Score=43.79  Aligned_cols=143  Identities=17%  Similarity=0.153  Sum_probs=74.8

Q ss_pred             cCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCc-cceeeeeecCCcceEEEeccCCC
Q 044211           39 KNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCI-FKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        39 G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      |-.-.+|+.....    ...++..|++|......... -.-.+|..+++.+..-++ .++++++. .+   +|.+|+++.
T Consensus        25 GlTN~~~~v~~~~----~~~~~~~~v~Ri~g~~t~~~-IdR~~E~~il~~l~~~gl~P~~l~~~~-~G---~i~~fi~g~   95 (330)
T PLN02421         25 GITNLLLKVSVKE----ENGNEVSVTVRLFGPNTDYV-IDRERELQAIKYLSAAGFGAKLLGVFG-NG---MIQSFINAR   95 (330)
T ss_pred             cccceEEEEEecC----CCCCCceEEEEEecCCcCeE-echHHHHHHHHHHHhcCCCCceeEEeC-Cc---EeehhhcCC
Confidence            3346788876531    00013479999886543222 223578888888864444 35565552 22   588888765


Q ss_pred             Chh--------------HHhhhhCCCCCC-CC-CCCHHHHHHHHHHH-------------------------HHHHHHhh
Q 044211          118 SLA--------------DRIRIHHTPQPQ-HE-PLLLTHRLKIAMDI-------------------------ANAIAYLH  156 (292)
Q Consensus       118 sL~--------------~~l~~~~~~~~~-~~-~l~~~~~~~i~~~i-------------------------~~~l~~lh  156 (292)
                      +|.              ..+++.+..... .. +-.+..+..+..++                         +..+..+.
T Consensus        96 ~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~  175 (330)
T PLN02421         96 TLTPSDMRKPKVAAEIAKELRRLHQVEIPGSKEPQLWNDIFKFYEKASTVKFEDPEKQKKYETISFEELRDEIVELKEIT  175 (330)
T ss_pred             CCChHHCCCHHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHhhhcccCcHHHhhhhcccCHHHHHHHHHHHHHHh
Confidence            442              222332221111 11 11122222222111                         11111111


Q ss_pred             c--CCCCCcccCCCCCCceEecC-CCceEEeeccccc
Q 044211          157 V--GFPRPVIFRDFKLSNILFNE-ENVAKLFDFSFSI  190 (292)
Q Consensus       157 ~--~~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~a~  190 (292)
                      .  ....-+.|+|+.+.||++++ ++.+++.||..|.
T Consensus       176 ~~~~~~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag  212 (330)
T PLN02421        176 DSLKAPVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGS  212 (330)
T ss_pred             ccCCCCeEEEECCCCcccEEEeCCCCcEEEEcccccC
Confidence            1  01224689999999999974 5789999998875

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.52  E-value=0.43  Score=39.01  Aligned_cols=59  Identities=17%  Similarity=0.151  Sum_probs=43.7

Q ss_pred             CCeEEEEEeecCCCcchHHHHHHHHHHHHhcCC---CCccceeeeeecCCcceEEEeccCCCChh
Q 044211           59 QERPVSVMKFDESKPRTYDCCINNIVYASQMIH---RCIFKLIGCCLETQIPILVFEYINCGSLA  120 (292)
Q Consensus        59 ~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h---~niv~~~~~~~~~~~~~lv~e~~~~gsL~  120 (292)
                      ...++.+|+-..   .....|..|+.-|.-|.-   -+|.+++.+-...+..|+|+||.+-|.+.
T Consensus        38 g~~~~FvK~n~~---~~~~~f~AEa~gL~~la~s~ti~VP~vi~~G~~~~~sylVle~L~~~~~d   99 (286)
T COG3001          38 GTDPFFVKCNQR---EQLSMFTAEADGLELLARSNTITVPKVIAVGASRDHSYLVLEYLPTGPLD   99 (286)
T ss_pred             CCcceEEEecch---hhHHHHHHHHHHHHHHHhcCCccccceEEecCCCCeeEEEEeeccCCCCC
Confidence            556788887432   334668888888887743   45678888888888999999999876554

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=95.16  E-value=0.31  Score=42.30  Aligned_cols=28  Identities=29%  Similarity=0.574  Sum_probs=25.3

Q ss_pred             cccCCCCCCceEecCCC-ceEEeeccccc
Q 044211          163 VIFRDFKLSNILFNEEN-VAKLFDFSFSI  190 (292)
Q Consensus       163 i~H~dlk~~nili~~~~-~~kl~Dfg~a~  190 (292)
                      ++|+|+.|.||+++.+. ...+.||+-+.
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEccccc
Confidence            89999999999999887 48899998875

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=95.03  E-value=0.036  Score=54.71  Aligned_cols=107  Identities=17%  Similarity=0.142  Sum_probs=76.8

Q ss_pred             HHHHHHHHHhcCCCCccceeeeeecCCc----ceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 044211           79 CINNIVYASQMIHRCIFKLIGCCLETQI----PILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAY  154 (292)
Q Consensus        79 ~~~e~~~l~~l~h~niv~~~~~~~~~~~----~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~  154 (292)
                      ..-|+..+.++.|+|++.++.+-.....    .....+++..-++...+       ..-...+....+.+..++.+|+.+
T Consensus       229 ~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~-------q~v~~i~~~~~r~~~~~~~~GL~~  301 (1351)
T KOG1035|consen  229 TEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLL-------QSVGSIPLETLRILHQKLLEGLAY  301 (1351)
T ss_pred             HHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHH-------hhccccCHHHHHHHHHHHhhhHHH
Confidence            3456677888899999999988765332    23445788888888888       345678888999999999999999


Q ss_pred             hhcCCCCCcccCCCCCC---ceEecCCCceEEe--ecccccccCCC
Q 044211          155 LHVGFPRPVIFRDFKLS---NILFNEENVAKLF--DFSFSISIPEG  195 (292)
Q Consensus       155 lh~~~~~~i~H~dlk~~---nili~~~~~~kl~--Dfg~a~~~~~~  195 (292)
                      +|   .....|.-+..+   +.-.+..+...++  ||+.+......
T Consensus       302 ~h---~~~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~  344 (1351)
T KOG1035|consen  302 LH---SLSLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDN  344 (1351)
T ss_pred             HH---HhccceeEEecccccccccCccceeecchhhhcccccCCCc
Confidence            99   665555555544   4444556666666  88877766543

>PRK06148 hypothetical protein; Provisional

Probab=94.42  E-value=1.6  Score=44.00  Aligned_cols=31  Identities=32%  Similarity=0.483  Sum_probs=25.8

Q ss_pred             CCCcccCCCCCCceEecCCC--ceE-Eeeccccc
Q 044211          160 PRPVIFRDFKLSNILFNEEN--VAK-LFDFSFSI  190 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~~--~~k-l~Dfg~a~  190 (292)
                      ...++|+|+++.|||++.++  .+. |.|||-+.
T Consensus       202 p~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~  235 (1013)
T PRK06148        202 PAQVIHNDANDYNILVDADDGERISGLIDFGDAV  235 (1013)
T ss_pred             CcceECCCCCcccEEEcCCCCcceEEEEECcccc
Confidence            45799999999999999775  444 99999875

>PTZ00384 choline kinase; Provisional

Probab=93.86  E-value=1.2  Score=39.49  Aligned_cols=29  Identities=24%  Similarity=0.245  Sum_probs=24.0

Q ss_pred             CCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          161 RPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       161 ~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      ....|.|+.+.||+.+++ .+++.||..|.
T Consensus       227 ~VfCHNDL~~gNIL~~~~-~l~lID~EYA~  255 (383)
T PTZ00384        227 VLFCHNDLFFTNILDFNQ-GIYFIDFDFAG  255 (383)
T ss_pred             eeeeeccCCcccEEecCC-CEEEEEecccc
Confidence            456899999999997654 69999998774

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=93.75  E-value=0.08  Score=46.11  Aligned_cols=54  Identities=24%  Similarity=0.284  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          135 PLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       135 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      .-..+++..++.+.+.-+.-+..  ..+.-|||+...||+|+ +|++.|.||.+++.
T Consensus       317 ~~~~~e~lsff~s~~sil~~lek--kf~fehrnlt~~niLId-~GnvtLIDfklsRl  370 (488)
T COG5072         317 ADRSEEELSFFWSCISILDILEK--KFPFEHRNLTLDNILID-EGNVTLIDFKLSRL  370 (488)
T ss_pred             cccHHHHHHHHHHHHHHHhhhhh--cCCcccccccccceeee-cCceEEEEeeeeec
Confidence            45567888888888777777764  56788999999999999 89999999999983

>PRK10271 thiK thiamine kinase; Provisional

Probab=92.38  E-value=0.12  Score=40.82  Aligned_cols=30  Identities=13%  Similarity=0.323  Sum_probs=25.7

Q ss_pred             CCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          161 RPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       161 ~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ....|+|+.|.|+++++++ +++.||+.+..
T Consensus        77 ~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~  106 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSASG-LRLIDWEYAGD  106 (188)
T ss_pred             eeeecCCCCCccEEEECCC-EEEEeCCcccC
Confidence            3558999999999998877 88999998853

>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []

Probab=92.01  E-value=1.1  Score=37.27  Aligned_cols=71  Identities=13%  Similarity=-0.040  Sum_probs=49.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHH---HHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNI---VYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~---~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|..+.|+.+...        +|+++++|+......     +..|.   ..|+..+-...|++++.-..  .-.+++|.+
T Consensus        12 ~g~~s~V~pv~~~--------dG~~avLKl~~p~~~-----~~~E~~g~~~L~~w~G~GaVrll~~d~~--~~AlLLErl   76 (253)
T PF04655_consen   12 HGSSSLVVPVRRA--------DGTPAVLKLAPPHAE-----AEHEARGEAALRWWNGRGAVRLLAADPE--RGALLLERL   76 (253)
T ss_pred             CCcceEEEEEEcC--------CCCeEEEEecCCccc-----chhhhhHHhHhheeCCCCceeeeccccc--cchhhhhhc
Confidence            5778999999887        999999999765422     11333   55777776677888877533  445788887


Q ss_pred             -CCCChhHHh
Q 044211          115 -NCGSLADRI  123 (292)
Q Consensus       115 -~~gsL~~~l  123 (292)
                       .+.+|.++.
T Consensus        77 ~~g~~L~~~~   86 (253)
T PF04655_consen   77 DPGRSLASLP   86 (253)
T ss_pred             cCCCchhhcc
Confidence             444665444

Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	292
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		7e-20
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-19
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		6e-08
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		1e-07
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		5e-07
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		7e-07
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		8e-07
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		9e-07
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		2e-06
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		2e-06
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		2e-06
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		3e-06
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		3e-06
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		4e-06
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		4e-06
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		4e-06
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		4e-06
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		4e-06
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		5e-06
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		5e-06
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		8e-06
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		8e-06
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		2e-05
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		3e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		4e-05
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		4e-05
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		6e-05
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		6e-05
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		6e-05
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		6e-05
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		6e-05
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		6e-05
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		6e-05
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		6e-05
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		6e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		7e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		7e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		7e-05
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		7e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		7e-05
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		7e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		8e-05
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		1e-04
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		1e-04
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		2e-04
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		2e-04
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		2e-04
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		2e-04
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		2e-04
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		3e-04
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		3e-04
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		4e-04
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		4e-04
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		5e-04
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		6e-04
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		6e-04
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		6e-04
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		6e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		6e-04
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		6e-04
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		7e-04
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		7e-04
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		7e-04
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		7e-04
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		7e-04
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		7e-04
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		8e-04
3b2t_A	311	Structure Of Phosphotransferase Length = 311		8e-04
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		8e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		8e-04
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		8e-04
2pl0_A	289	Lck Bound To Imatinib Length = 289		9e-04

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 44/301 (14%)
Query: 23  IRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINN 82
           ++ F   EL+   +   N   L  G F             V+V +  E + +  +     
Sbjct: 17  LKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQT 76
Query: 83  IV-YASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR 141
            V   S  +HR + +L G C+     +LV+ Y+  GS+A  +R     QP   PL    R
Sbjct: 77  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQP---PLDWPKR 133
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHIS- 200
            +IA+  A  +AYLH      +I RD K +NIL +EE  A + DF  +  +   + H+  
Sbjct: 134 QRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXX 193
Query: 201 ---------------------------------ELLSGLRAFDLARLNEDDGYVVLLDHI 227
                                            EL++G RAFDLARL  DD  V+LLD +
Sbjct: 194 AVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD-VMLLDWV 252
Query: 228 KKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA 286
           K   +E +L  ++D  + G+       ++++    +   C   SP++RP M +V +  + 
Sbjct: 253 KGLLKEKKLEALVDVDLQGNY----KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308
Query: 287 N 287
           +
Sbjct: 309 D 309

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 44/301 (14%)
Query: 23  IRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINN 82
           ++ F   EL+   +   N   L  G F             V+V +  E + +  +     
Sbjct: 25  LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQT 84
Query: 83  IV-YASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR 141
            V   S  +HR + +L G C+     +LV+ Y+  GS+A  +R     QP   PL    R
Sbjct: 85  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQP---PLDWPKR 141
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHIS- 200
            +IA+  A  +AYLH      +I RD K +NIL +EE  A + DF  +  +   + H+  
Sbjct: 142 QRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXX 201
Query: 201 ---------------------------------ELLSGLRAFDLARLNEDDGYVVLLDHI 227
                                            EL++G RAFDLARL  DD  V+LLD +
Sbjct: 202 AVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD-VMLLDWV 260
Query: 228 KKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA 286
           K   +E +L  ++D  + G+       ++++    +   C   SP++RP M +V +  + 
Sbjct: 261 KGLLKEKKLEALVDVDLQGNY----KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 316
Query: 287 N 287
           +
Sbjct: 317 D 317

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  +  LIG C E    IL+++Y+  G+L   +     P      +    RL+I +  A 
Sbjct: 94  HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMS---MSWEQRLEICIGAAR 150
Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE-GETHISELLSGLRAF 209
            + YLH    R +I RD K  NIL +E  V K+ DF  S    E G+TH+  ++ G   +
Sbjct: 151 GLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGY 207

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPIL--VFEYINCGSLA 120
           V  +K D + P+        I     + H  I K  GCC +     L  V EY+  GSL 
Sbjct: 65  VKALKAD-AGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLR 123
Query: 121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV 180
           D +       P+H  + L   L  A  I   +AYLH    +  I RD    N+L + + +
Sbjct: 124 DYL-------PRHS-IGLAQLLLFAQQICEGMAYLHA---QHYIHRDLAARNVLLDNDRL 172
Query: 181 AKLFDFSFSISIPEG 195
            K+ DF  + ++PEG
Sbjct: 173 VKIGDFGLAKAVPEG 187

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  +  LIG C E    IL+++Y+  G+L   +     P      +    RL+I +  A 
Sbjct: 94  HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMS---MSWEQRLEICIGAAR 150
Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE-GETHISELLSGLRAF 209
            + YLH    R +I RD K  NIL +E  V K+ DF  S    E  +TH+  ++ G   +
Sbjct: 151 GLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGY 207

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 71/172 (41%), Gaps = 38/172 (22%)
Query: 48  FFQNRPISGFFQERPVSVM--KFDESK-PRTYDCCINNIVYASQMI-------------- 90
           F++ + ++  F ERP+SV   K  E      Y   +NN   A + +              
Sbjct: 17  FYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQ 76
Query: 91  ------------HRCIFKLIGCCLETQIPILVFEYINCGSLADRIR-IHHTPQPQHEPLL 137
                       H  + +L+G   +     LV+ Y+  GSL DR+  +  TP     PL 
Sbjct: 77  FDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-----PLS 131
Query: 138 LTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
              R KIA   AN I +LH       I RD K +NIL +E   AK+ DF  +
Sbjct: 132 WHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLA 180

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 71/172 (41%), Gaps = 38/172 (22%)
Query: 48  FFQNRPISGFFQERPVSVM--KFDESK-PRTYDCCINNIVYASQMI-------------- 90
           F++ + ++  F ERP+SV   K  E      Y   +NN   A + +              
Sbjct: 17  FYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQ 76
Query: 91  ------------HRCIFKLIGCCLETQIPILVFEYINCGSLADRIR-IHHTPQPQHEPLL 137
                       H  + +L+G   +     LV+ Y+  GSL DR+  +  TP     PL 
Sbjct: 77  FDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-----PLS 131
Query: 138 LTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
              R KIA   AN I +LH       I RD K +NIL +E   AK+ DF  +
Sbjct: 132 WHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLA 180

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 71/172 (41%), Gaps = 38/172 (22%)
Query: 48  FFQNRPISGFFQERPVSVM--KFDESK-PRTYDCCINNIVYASQMI-------------- 90
           F++ + ++  F ERP+SV   K  E      Y   +NN   A + +              
Sbjct: 11  FYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQ 70
Query: 91  ------------HRCIFKLIGCCLETQIPILVFEYINCGSLADRIR-IHHTPQPQHEPLL 137
                       H  + +L+G   +     LV+ Y+  GSL DR+  +  TP     PL 
Sbjct: 71  FDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-----PLS 125
Query: 138 LTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
              R KIA   AN I +LH       I RD K +NIL +E   AK+ DF  +
Sbjct: 126 WHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLA 174

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 89  MIHRCIFKLIGCCLET--QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           + H  I K  GCC +   +   LV EY+  GSL D +       P+H  + L   L  A 
Sbjct: 73  LYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYL-------PRHS-IGLAQLLLFAQ 124
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
            I   +AYLH    +  I R+    N+L + + + K+ DF  + ++PEG  +
Sbjct: 125 QICEGMAYLHA---QHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY 173

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 38/172 (22%)
Query: 48  FFQNRPISGFFQERPVSVMKFDESKPR---TYDCCINNIVYASQMI-------------- 90
           F++ + ++  F ERP+SV      +      Y   +NN   A + +              
Sbjct: 8   FYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQ 67
Query: 91  ------------HRCIFKLIGCCLETQIPILVFEYINCGSLADRIR-IHHTPQPQHEPLL 137
                       H  + +L+G   +     LV+ Y   GSL DR+  +  TP     PL 
Sbjct: 68  FDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTP-----PLS 122
Query: 138 LTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
              R KIA   AN I +LH       I RD K +NIL +E   AK+ DF  +
Sbjct: 123 WHXRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLA 171

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 89  MIHRCIFKLIGCCLET--QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           + H  I K  GCC +   +   LV EY+  GSL D +       P+H  + L   L  A 
Sbjct: 73  LYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYL-------PRHS-IGLAQLLLFAQ 124
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
            I   +AYLH    +  I R+    N+L + + + K+ DF  + ++PEG  +
Sbjct: 125 QICEGMAYLH---SQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY 173

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 71  SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQ 130
           S+P   D  I  +     + HR + +L G  L   +  +V E    GSL DR+R H    
Sbjct: 60  SQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGH- 117
Query: 131 PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI 190
                 LL    + A+ +A  + YL     +  I RD    N+L    ++ K+ DF    
Sbjct: 118 -----FLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMR 169
Query: 191 SIPEGETH 198
           ++P+ + H
Sbjct: 170 ALPQNDDH 177

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 71  SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQ 130
           S+P   D  I  +     + HR + +L G  L   +  +V E    GSL DR+R H    
Sbjct: 60  SQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGH- 117
Query: 131 PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI 190
                 LL    + A+ +A  + YL     +  I RD    N+L    ++ K+ DF    
Sbjct: 118 -----FLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMR 169
Query: 191 SIPEGETH 198
           ++P+ + H
Sbjct: 170 ALPQNDDH 177

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 76  YDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEP 135
           +   I  + +  ++ H    +  GC L      LV EY   GS +D + +H  P  + E 
Sbjct: 98  WQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEI 156
Query: 136 LLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF-SFSISIP 193
             +TH           +AYLH      +I RD K  NIL +E  + KL DF S SI  P
Sbjct: 157 AAVTH------GALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP 206

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 71  SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQ 130
           S+P   D  I  +     + HR + +L G  L   +  +V E    GSL DR+R H    
Sbjct: 54  SQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGH- 111
Query: 131 PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI 190
                 LL    + A+ +A  + YL     +  I RD    N+L    ++ K+ DF    
Sbjct: 112 -----FLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMR 163
Query: 191 SIPEGETH 198
           ++P+ + H
Sbjct: 164 ALPQNDDH 171

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 71  SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQ 130
           S+P   D  I  +     + HR + +L G  L   +  +V E    GSL DR+R H    
Sbjct: 54  SQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGH- 111
Query: 131 PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI 190
                 LL    + A+ +A  + YL     +  I RD    N+L    ++ K+ DF    
Sbjct: 112 -----FLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMR 163
Query: 191 SIPEGETH 198
           ++P+ + H
Sbjct: 164 ALPQNDDH 171

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 71  SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQ 130
           S+P   D  I  +     + HR + +L G  L   +  +V E    GSL DR+R H    
Sbjct: 50  SQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGH- 107
Query: 131 PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI 190
                 LL    + A+ +A  + YL     +  I RD    N+L    ++ K+ DF    
Sbjct: 108 -----FLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMR 159
Query: 191 SIPEGETH 198
           ++P+ + H
Sbjct: 160 ALPQNDDH 167

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 71  SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQ 130
           S+P   D  I  +     + HR + +L G  L   +  +V E    GSL DR+R H    
Sbjct: 50  SQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGH- 107
Query: 131 PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI 190
                 LL    + A+ +A  + YL     +  I RD    N+L    ++ K+ DF    
Sbjct: 108 -----FLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMR 159
Query: 191 SIPEGETH 198
           ++P+ + H
Sbjct: 160 ALPQNDDH 167

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 71  SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQ 130
           S+P   D  I  +     + HR + +L G  L   +  +V E    GSL DR+R H    
Sbjct: 50  SQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGH- 107
Query: 131 PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI 190
                 LL    + A+ +A  + YL     +  I RD    N+L    ++ K+ DF    
Sbjct: 108 -----FLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMR 159
Query: 191 SIPEGETH 198
           ++P+ + H
Sbjct: 160 ALPQNDDH 167

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 76  YDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEP 135
           +   I  + +  ++ H    +  GC L      LV EY   GS +D + +H  P  + E 
Sbjct: 59  WQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEI 117
Query: 136 LLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF-SFSISIP 193
             +TH           +AYLH      +I RD K  NIL +E  + KL DF S SI  P
Sbjct: 118 AAVTH------GALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP 167

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 89  MIHRCIFKLIGCCLET--QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           + H  I K  GCC +   +   LV EY+  GSL D +       P+H  + L   L  A 
Sbjct: 67  LYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYL-------PRH-CVGLAQLLLFAQ 118
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
            I   +AYLH    +  I R     N+L + + + K+ DF  + ++PEG  +
Sbjct: 119 QICEGMAYLHA---QHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEY 167

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 89  MIHRCIFKLIGCCLET--QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           + H  I K  GCC +   +   LV EY+  GSL D +       P+H  + L   L  A 
Sbjct: 68  LYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYL-------PRH-CVGLAQLLLFAQ 119
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
            I   +AYLH    +  I R     N+L + + + K+ DF  + ++PEG  +
Sbjct: 120 QICEGMAYLHA---QHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEY 168

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 87  SQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIA 145
           +Q+ H  + +L+G  +E +  + +V EY+  GSL D +R         + LL     K +
Sbjct: 69  TQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL-----KFS 123
Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           +D+  A+ YL        + RD    N+L +E+NVAK+ DF  +
Sbjct: 124 LDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT 164

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 87  SQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIA 145
           +Q+ H  + +L+G  +E +  + +V EY+  GSL D +R         + LL     K +
Sbjct: 60  TQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL-----KFS 114
Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           +D+  A+ YL        + RD    N+L +E+NVAK+ DF  +
Sbjct: 115 LDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT 155

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 87  SQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIA 145
           +Q+ H  + +L+G  +E +  + +V EY+  GSL D +R         + LL     K +
Sbjct: 54  TQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL-----KFS 108
Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           +D+  A+ YL        + RD    N+L +E+NVAK+ DF  +
Sbjct: 109 LDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT 149

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 87  SQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIA 145
           +Q+ H  + +L+G  +E +  + +V EY+  GSL D +R         + LL     K +
Sbjct: 241 TQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL-----KFS 295
Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           +D+  A+ YL        + RD    N+L +E+NVAK+ DF  +
Sbjct: 296 LDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT 336

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 88  QMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           ++ H  + +L G CLE Q PI LVFE++  G L+D +R       Q         L + +
Sbjct: 58  KLSHPKLVQLYGVCLE-QAPICLVFEFMEHGCLSDYLRT------QRGLFAAETLLGMCL 110
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           D+   +AYL       VI RD    N L  E  V K+ DF  +
Sbjct: 111 DVCEGMAYLE---EASVIHRDLAARNCLVGENQVIKVSDFGMT 150

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
           +  +    ++ H  I   +G   +     +V EY++ GSL    R+ H      E L   
Sbjct: 82  LREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSL---YRLLHK-SGAREQLDER 137
Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            RL +A D+A  + YLH   P P++ RD K  N+L +++   K+ DF  S
Sbjct: 138 RRLSMAYDVAKGMNYLHNRNP-PIVHRDLKSPNLLVDKKYTVKVCDFGLS 186

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP------QPQHEP---LLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + ++    P       P H P   L     
Sbjct: 93  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSSKDL 152
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF  +  I
Sbjct: 153 VSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDI 200

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP------QPQHEP---LLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + ++    P       P H P   L     
Sbjct: 85  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 144
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF  +  I
Sbjct: 145 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDI 192

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP------QPQHEP---LLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + ++    P       P H P   L     
Sbjct: 93  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 152
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF  +  I
Sbjct: 153 VSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDI 200

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP------QPQHEP---LLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + ++    P       P H P   L     
Sbjct: 82  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 141
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF  +  I
Sbjct: 142 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDI 189

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP------QPQHEP---LLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + ++    P       P H P   L     
Sbjct: 134 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 193
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF  +  I
Sbjct: 194 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDI 241

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP------QPQHEP---LLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + ++    P       P H P   L     
Sbjct: 86  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 145
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF  +  I
Sbjct: 146 VSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDI 193

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP------QPQHEP---LLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + ++    P       P H P   L     
Sbjct: 93  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDL 152
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF  +  I
Sbjct: 153 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDI 200

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           S + H  I KL G  L    P +V E++ CG L      +H    +  P+  + +L++ +
Sbjct: 78  SNLNHPNIVKLYG--LMHNPPRMVMEFVPCGDL------YHRLLDKAHPIKWSVKLRLML 129
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFN--EENV---AKLFDFSFS 189
           DIA  I Y+    P P++ RD +  NI     +EN    AK+ DFS S
Sbjct: 130 DIALGIEYMQNQNP-PIVHRDLRSPNIFLQSLDENAPVCAKVADFSLS 176

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 22/171 (12%)
Query: 41  GYKLYEGFFQNRPIS---GFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMI----- 90
           G  L EG F    ++   G  +++P  V K      K    +  +++++   +M+     
Sbjct: 33  GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGK 92
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP------QPQHEP---LLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + ++    P       P H P   L     
Sbjct: 93  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKDL 152
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF  +  I
Sbjct: 153 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDI 200

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 87  SQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIA 145
           S++ H  I KL G CL    P+ LV EY   GSL + +     P P +      H +   
Sbjct: 57  SRVNHPNIVKLYGACLN---PVCLVMEYAEGGSLYNVLH-GAEPLPYY---TAAHAMSWC 109
Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILF-NEENVAKLFDFSFSISIPEGETHIS 200
           +  +  +AYLH   P+ +I RD K  N+L      V K+ DF  +  I   +TH++
Sbjct: 110 LQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI---QTHMT 162

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 88  QMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           ++ H  + +L G CLE Q PI LVFE++  G L+D +R       Q         L + +
Sbjct: 61  KLSHPKLVQLYGVCLE-QAPICLVFEFMEHGCLSDYLRT------QRGLFAAETLLGMCL 113
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           D+   +AYL       VI RD    N L  E  V K+ DF  +
Sbjct: 114 DVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMT 153

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 88  QMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           ++ H  + +L G CLE Q PI LVFE++  G L+D +R       Q         L + +
Sbjct: 78  KLSHPKLVQLYGVCLE-QAPICLVFEFMEHGCLSDYLRT------QRGLFAAETLLGMCL 130
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           D+   +AYL       VI RD    N L  E  V K+ DF  +
Sbjct: 131 DVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMT 170

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP------QPQHEP---LLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + ++    P       P H P   L     
Sbjct: 78  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDL 137
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF  +  I
Sbjct: 138 VSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDI 185

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 87  SQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIA 145
           S++ H  I KL G CL    P+ LV EY   GSL + +     P P +      H +   
Sbjct: 56  SRVNHPNIVKLYGACLN---PVCLVMEYAEGGSLYNVLH-GAEPLPYY---TAAHAMSWC 108
Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILF-NEENVAKLFDFSFSISIPEGETHIS 200
           +  +  +AYLH   P+ +I RD K  N+L      V K+ DF  +  I   +TH++
Sbjct: 109 LQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI---QTHMT 161

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 88  QMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           ++ H  + +L G CLE Q PI LVFE++  G L+D +R       Q         L + +
Sbjct: 58  KLSHPKLVQLYGVCLE-QAPICLVFEFMEHGCLSDYLRT------QRGLFAAETLLGMCL 110
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           D+   +AYL       VI RD    N L  E  V K+ DF  +
Sbjct: 111 DVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMT 150

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 88  QMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           ++ H  + +L G CLE Q PI LVFE++  G L+D +R       Q         L + +
Sbjct: 56  KLSHPKLVQLYGVCLE-QAPICLVFEFMEHGCLSDYLRT------QRGLFAAETLLGMCL 108
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           D+   +AYL       VI RD    N L  E  V K+ DF  +
Sbjct: 109 DVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMT 148

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 86  ASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIA 145
           +SQ+ H+ I  +I    E     LV EYI   +L++ I         H PL +   +   
Sbjct: 65  SSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIE-------SHGPLSVDTAINFT 117
Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE-THISELLS 204
             I + I + H      ++ RD K  NIL +     K+FDF  + ++ E   T  + +L 
Sbjct: 118 NQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLG 174
Query: 205 GLRAF 209
            ++ F
Sbjct: 175 TVQYF 179

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
           +  +    ++ H  I   +G   +     +V EY++ GSL    R+ H      E L   
Sbjct: 82  LREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSL---YRLLHK-SGAREQLDER 137
Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            RL +A D+A  + YLH   P P++ R+ K  N+L +++   K+ DF  S
Sbjct: 138 RRLSMAYDVAKGMNYLHNRNP-PIVHRNLKSPNLLVDKKYTVKVCDFGLS 186

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 65  VMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIR 124
           +++FDE   RT+   +  +     + H  + K IG   + +    + EYI  G+L   I+
Sbjct: 43  LIRFDEETQRTF---LKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIK 99
Query: 125 IHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF 184
              +  P       + R+  A DIA+ +AYLH      +I RD    N L  E     + 
Sbjct: 100 SMDSQYP------WSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVA 150
Query: 185 DFSFSISIPEGETHISELLS 204
           DF  +  + + +T    L S
Sbjct: 151 DFGLARLMVDEKTQPEGLRS 170

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 94  IFKLIGCCLETQIPILVFEYINCGSLADRIR---------IHHT--------PQPQHEPL 136
           I KL+G C   +   L+FEY+  G L + +R         + H+          P   PL
Sbjct: 112 IVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPL 171
Query: 137 LLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
               +L IA  +A  +AYL     R  + RD    N L  E  V K+ DF  S +I
Sbjct: 172 SCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNI 224

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           S + H  I KL G  L    P +V E++ CG L  R+        +  P+  + +L++ +
Sbjct: 78  SNLNHPNIVKLYG--LMHNPPRMVMEFVPCGDLYHRLL------DKAHPIKWSVKLRLML 129
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFN--EENV---AKLFDFSFS 189
           DIA  I Y+    P P++ RD +  NI     +EN    AK+ DF  S
Sbjct: 130 DIALGIEYMQNQNP-PIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS 176

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH-------HTPQPQHEPLLLT 139
           + + H  I K  G C+E    I+VFEY+  G L   +R H           P  E L  +
Sbjct: 70  TNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTE-LTQS 128
Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
             L IA  IA  + YL     +  + RD    N L  E  + K+ DF  S
Sbjct: 129 QMLHIAQQIAAGMVYL---ASQHFVHRDLATRNCLVGENLLVKIGDFGMS 175

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVF-EYINCGSLADRIR------IHHTPQPQHEPLL-LTHRL 142
           H  +  L+G C +   P++V  E+   G+L+  +R      + + P+  ++  L L H +
Sbjct: 92  HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKPEDLYKDFLTLEHLI 151
Query: 143 KIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
             +  +A  + +L     R  I RD    NIL +E+NV K+ DF  +  I
Sbjct: 152 XYSFQVAKGMEFLAS---RKXIHRDLAARNILLSEKNVVKICDFGLARDI 198

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           S + H  I KL G  L    P +V E++ CG L  R+        +  P+  + +L++ +
Sbjct: 78  SNLNHPNIVKLYG--LMHNPPRMVMEFVPCGDLYHRLL------DKAHPIKWSVKLRLML 129
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFN--EENV---AKLFDFSFS 189
           DIA  I Y+    P P++ RD +  NI     +EN    AK+ DF  S
Sbjct: 130 DIALGIEYMQNQNP-PIVHRDLRSPNIFLQSLDENAPVCAKVADFGTS 176

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH---------HTPQPQHEPLL 137
           + + H  I K  G C +    I+VFEY+  G L   +R H           P+     L 
Sbjct: 72  TNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELG 131
Query: 138 LTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           L+  L IA  IA+ + YL     +  + RD    N L     + K+ DF  S
Sbjct: 132 LSQMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVGANLLVKIGDFGMS 180

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 14/198 (7%)
Query: 27  CAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYA 86
            A++ +     I  G ++  G F       +  +  V ++      P+      N +   
Sbjct: 15  AADDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 74
Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
            +  H  I   +G     Q+ I V ++    SL   +   H  + + E   +   + IA 
Sbjct: 75  RKTRHVNILLFMGYSTAPQLAI-VTQWCEGSSLYHHL---HASETKFE---MKKLIDIAR 127
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE-THISELLSG 205
             A  + YLH    + +I RD K +NI  +E+N  K+ DF  +        +H  E LSG
Sbjct: 128 QTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSG 184
Query: 206 ---LRAFDLARLNEDDGY 220
                A ++ R+ + + Y
Sbjct: 185 SILWMAPEVIRMQDSNPY 202

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQ---------HEPLL 137
           + + H+ I +  G C E +  ++VFEY+  G L +R    H P  +           PL 
Sbjct: 98  TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL-NRFLRSHGPDAKLLAGGEDVAPGPLG 156
Query: 138 LTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           L   L +A  +A  + YL  G     + RD    N L  +  V K+ DF  S  I
Sbjct: 157 LGQLLAVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDI 208

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQ---------HEPLL 137
           + + H+ I +  G C E +  ++VFEY+  G L +R    H P  +           PL 
Sbjct: 69  TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL-NRFLRSHGPDAKLLAGGEDVAPGPLG 127
Query: 138 LTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           L   L +A  +A  + YL  G     + RD    N L  +  V K+ DF  S  I
Sbjct: 128 LGQLLAVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDI 179

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQ---------HEPLL 137
           + + H+ I +  G C E +  ++VFEY+  G L +R    H P  +           PL 
Sbjct: 75  TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL-NRFLRSHGPDAKLLAGGEDVAPGPLG 133
Query: 138 LTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           L   L +A  +A  + YL  G     + RD    N L  +  V K+ DF  S  I
Sbjct: 134 LGQLLAVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDI 185

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVF-EYINCGSLADRIRI-------HHTPQPQHEPLL-LTHR 141
           H  +  L+G C +   P++V  E+   G+L+  +R        + TP+  ++  L L H 
Sbjct: 91  HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTPEDLYKDFLTLEHL 150
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +  +  +A  + +L     R  I RD    NIL +E+NV K+ DF  +  I
Sbjct: 151 ICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDI 198

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 14/198 (7%)
Query: 27  CAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYA 86
            +++ +     I  G ++  G F       +  +  V ++      P+      N +   
Sbjct: 3   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 62
Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
            +  H  I   +G   + Q+ I V ++    SL   +   H  + + E   +   + IA 
Sbjct: 63  RKTRHVNILLFMGYSTKPQLAI-VTQWCEGSSLYHHL---HASETKFE---MKKLIDIAR 115
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSF-SISIPEGETHISELLSG 205
             A  + YLH    + +I RD K +NI  +E+N  K+ DF   ++      +H  E LSG
Sbjct: 116 QTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSG 172
Query: 206 ---LRAFDLARLNEDDGY 220
                A ++ R+ + + Y
Sbjct: 173 SILWMAPEVIRMQDSNPY 190

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 14/198 (7%)
Query: 27  CAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYA 86
            +++ +     I  G ++  G F       +  +  V ++      P+      N +   
Sbjct: 15  SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 74
Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
            +  H  I   +G   + Q+ I V ++    SL   +   H  + + E   +   + IA 
Sbjct: 75  RKTRHVNILLFMGYSTKPQLAI-VTQWCEGSSLYHHL---HASETKFE---MKKLIDIAR 127
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE-THISELLSG 205
             A  + YLH    + +I RD K +NI  +E+N  K+ DF  +        +H  E LSG
Sbjct: 128 QTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSG 184
Query: 206 ---LRAFDLARLNEDDGY 220
                A ++ R+ + + Y
Sbjct: 185 SILWMAPEVIRMQDSNPY 202

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 88  QMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           ++ H  + +L G CLE Q PI LV E++  G L+D +R       Q         L + +
Sbjct: 59  KLSHPKLVQLYGVCLE-QAPICLVTEFMEHGCLSDYLRT------QRGLFAAETLLGMCL 111
Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           D+   +AYL       VI RD    N L  E  V K+ DF  +
Sbjct: 112 DVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMT 151

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 12/182 (6%)
Query: 21  NPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCI 80
            P + +  +E +     +K   +L  G F      G++       +K  +    + D  +
Sbjct: 6   KPQKPWWEDEWEVPRETLKLVERLGAGQF-GEVWMGYYNGHTKVAVKSLKQGSMSPDAFL 64
Query: 81  NNIVYASQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
                  Q+ H+ + +L      TQ PI ++ EY+  GSL D ++      P    L + 
Sbjct: 65  AEANLMKQLQHQRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKT-----PSGIKLTIN 117
Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHI 199
             L +A  IA  +A++     R  I RD + +NIL ++    K+ DF  +  I + E   
Sbjct: 118 KLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTA 174
Query: 200 SE 201
            E
Sbjct: 175 RE 176

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQH---------EPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + +R    P  ++         E +     
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +     +A  + YL     +  I RD    N+L  E NV K+ DF  +  I
Sbjct: 160 VSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDI 207

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQH---------EPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + +R    P  ++         E +     
Sbjct: 92  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 151
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +     +A  + YL     +  I RD    N+L  E NV K+ DF  +  I
Sbjct: 152 VSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDI 199

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 12/182 (6%)
Query: 21  NPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCI 80
            P + +  +E +     +K   +L  G F      G++       +K  +    + D  +
Sbjct: 4   KPQKPWWEDEWEVPRETLKLVERLGAGQF-GEVWMGYYNGHTKVAVKSLKQGSMSPDAFL 62
Query: 81  NNIVYASQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
                  Q+ H+ + +L      TQ PI ++ EY+  GSL D ++      P    L + 
Sbjct: 63  AEANLMKQLQHQRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKT-----PSGIKLTIN 115
Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHI 199
             L +A  IA  +A++     R  I RD + +NIL ++    K+ DF  +  I + E   
Sbjct: 116 KLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTA 172
Query: 200 SE 201
            E
Sbjct: 173 RE 174

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 80  INNIVYASQMIHRC----IFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHE- 134
           +  I+    ++ +C    + K  G   +     +V EY   GS++D IR+ +    + E 
Sbjct: 68  LQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEI 127
Query: 135 PLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
             +L   LK        + YLH  F R  I RD K  NIL N E  AKL DF  +
Sbjct: 128 ATILQSTLK-------GLEYLH--FMRK-IHRDIKAGNILLNTEGHAKLADFGVA 172

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQH---------EPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + +R    P  ++         E +     
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +     +A  + YL     +  I RD    N+L  E NV K+ DF  +  I
Sbjct: 160 VSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDI 207

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 69  DESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHT 128
           D+S  +++    ++++    + H  I +L+G C  + +  LV +Y+  GSL D +R H  
Sbjct: 52  DKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQ-LVTQYLPLGSLLDHVRQHRG 110
Query: 129 PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSF 188
                 P LL   L   + IA  + YL       ++ R+    N+L    +  ++ DF  
Sbjct: 111 AL---GPQLL---LNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGV 161
Query: 189 SISIP 193
           +  +P
Sbjct: 162 ADLLP 166

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQH---------EPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + +R    P  ++         E +     
Sbjct: 100 HKNIITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +     +A  + YL     +  I RD    N+L  E NV K+ DF  +  I
Sbjct: 160 VSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDI 207

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 12/181 (6%)
Query: 22  PIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCIN 81
           P + +  +E +     +K   +L  G F      G++       +K  +    + D  + 
Sbjct: 1   PQKPWWEDEWEVPRETLKLVERLGAGQF-GEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA 59
Query: 82  NIVYASQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTH 140
                 Q+ H+ + +L      TQ PI ++ EY+  GSL D ++      P    L +  
Sbjct: 60  EANLMKQLQHQRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKT-----PSGIKLTINK 112
Query: 141 RLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHIS 200
            L +A  IA  +A++     R  I RD + +NIL ++    K+ DF  +  I + E    
Sbjct: 113 LLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAR 169
Query: 201 E 201
           E
Sbjct: 170 E 170

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHT-PQPQHEPLLLTHRLKIA 145
           S + H  I ++ G   + Q   ++ +YI  G L   +R     P P  +          A
Sbjct: 61  SIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAK--------FYA 112
Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE 194
            ++  A+ YLH    + +I+RD K  NIL ++    K+ DF F+  +P+
Sbjct: 113 AEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD 158

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQH---------EPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + +R    P  ++         E +     
Sbjct: 89  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 148
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +     +A  + YL     +  I RD    N+L  E NV K+ DF  +  I
Sbjct: 149 VSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDI 196

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQH---------EPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + +R    P  ++         E +     
Sbjct: 87  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 146
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +     +A  + YL     +  I RD    N+L  E NV K+ DF  +  I
Sbjct: 147 VSCTYQLARGMEYLA---SQKCIHRDLTARNVLVTENNVMKIADFGLARDI 194

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 12/181 (6%)
Query: 22  PIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCIN 81
           P + +  +E +     +K   +L  G F      G++       +K  +    + D  + 
Sbjct: 8   PQKPWWEDEWEVPRETLKLVERLGAGQF-GEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA 66
Query: 82  NIVYASQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTH 140
                 Q+ H+ + +L      TQ PI ++ EY+  GSL D ++      P    L +  
Sbjct: 67  EANLMKQLQHQRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKT-----PSGIKLTINK 119
Query: 141 RLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHIS 200
            L +A  IA  +A++     R  I RD + +NIL ++    K+ DF  +  I + E    
Sbjct: 120 LLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAR 176
Query: 201 E 201
           E
Sbjct: 177 E 177

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQH---------EPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + +R    P  ++         E +     
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +     +A  + YL     +  I RD    N+L  E NV K+ DF  +  I
Sbjct: 160 VSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDI 207

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 69  DESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHT 128
           D+S  +++    ++++    + H  I +L+G C  + +  LV +Y+  GSL D +R H  
Sbjct: 70  DKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQ-LVTQYLPLGSLLDHVRQHRG 128
Query: 129 PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSF 188
                 P LL   L   + IA  + YL       ++ R+    N+L    +  ++ DF  
Sbjct: 129 ---ALGPQLL---LNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGV 179
Query: 189 SISIP 193
           +  +P
Sbjct: 180 ADLLP 184

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 12/177 (6%)
Query: 21  NPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCI 80
            P + +  +E +     +K   +L  G F      G++       +K  +    + D  +
Sbjct: 8   KPQKPWWEDEWEVPRETLKLVERLGAGQF-GEVWMGYYNGHTKVAVKSLKQGSMSPDAFL 66
Query: 81  NNIVYASQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
                  Q+ H+ + +L      TQ PI ++ EY+  GSL D ++      P    L + 
Sbjct: 67  AEANLMKQLQHQRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKT-----PSGIKLTIN 119
Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
             L +A  IA  +A++     R  I RD + +NIL ++    K+ DF  +  I + E
Sbjct: 120 KLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 173

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	3e-39
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-38
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	6e-36
3soc_A	322	Activin receptor type-2A; structural genomics cons	6e-20
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	4e-19
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-17
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-17
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	6e-17
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-16
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	1e-15
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-15
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-14
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-14
3q4u_A	301	Activin receptor type-1; structural genomics conso	3e-14
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	4e-14
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	6e-14
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	6e-13
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	8e-13
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	5e-11
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	6e-11
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	7e-11
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	3e-10
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	4e-10
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-10
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	4e-10
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	4e-10
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	5e-10
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-10
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	6e-10
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	7e-10
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	7e-10
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	7e-10
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	7e-10
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	8e-10
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	8e-10
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-09
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-09
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-09
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	3e-09
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-09
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	4e-09
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	4e-09
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	5e-09
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	5e-09
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	5e-09
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	6e-09
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	6e-09
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	6e-09
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	7e-09
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	7e-09
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	8e-09
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	9e-09
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	9e-09
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	9e-09
4aoj_A	329	High affinity nerve growth factor receptor; transf	1e-08
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-08
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-08
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-08
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-08
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-08
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	1e-08
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	2e-08
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	2e-08
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-08
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-08
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-08
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	3e-08
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	3e-08
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	4e-08
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	4e-08
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	5e-08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	6e-08
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	7e-08
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	8e-08
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	8e-08
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	8e-08
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-07
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-07
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	1e-07
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	2e-07
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-07
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-07
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-07
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	2e-07
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-07
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	2e-07
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-07
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-07
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	3e-07
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	3e-07
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	4e-07
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	4e-07
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-07
2a19_B	284	Interferon-induced, double-stranded RNA-activated	5e-07
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	5e-07
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	5e-07
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	6e-07
3pls_A	298	Macrophage-stimulating protein receptor; protein k	6e-07
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	7e-07
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-06
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-06
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-06
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-06
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-06
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-06
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-06
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-06
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-06
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-06
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-06
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-06
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	3e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	5e-06
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	5e-06
2dyl_A	318	Dual specificity mitogen-activated protein kinase	7e-06
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	9e-06
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-05
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	1e-05
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-05
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	1e-05
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	1e-05
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-05
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	2e-05
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	3e-05
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	3e-05
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-05
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-05
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	4e-05
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	5e-05
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	5e-05
3aln_A	327	Dual specificity mitogen-activated protein kinase;	5e-05
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	6e-05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	8e-05
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	9e-05
3uqc_A	286	Probable conserved transmembrane protein; structur	9e-05
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-04
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-04
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-04
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-04
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	3e-04
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	3e-04
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	3e-04
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	3e-04
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	4e-04
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	4e-04
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	4e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-04
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	5e-04
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	5e-04
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	5e-04
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	6e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	6e-04
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	7e-04
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	7e-04
3o0g_A	292	Cell division protein kinase 5; kinase activator c	7e-04
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	8e-04
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	9e-04
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	9e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  138 bits (351), Expect = 3e-39
 Identities = 56/230 (24%), Positives = 85/230 (36%), Gaps = 49/230 (21%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           S   H  +  LIG C E    IL+++Y+  G+L   +   +        +    RL+I +
Sbjct: 90  SFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHL---YGSDLPTMSMSWEQRLEICI 146

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG-ETHIS----- 200
             A  + YLH      +I RD K  NIL +E  V K+ DF  S    E  +TH+S     
Sbjct: 147 GAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKG 203

Query: 201 -----------------------------ELLSGLRAFDLARLNEDDGYVVLLDHIKKYF 231
                                        E+L    A   +   E    V L +   +  
Sbjct: 204 TLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREM---VNLAEWAVESH 260

Query: 232 EEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDV 280
              +L +I+DP +          + L+ F     +C+  S  DRP M DV
Sbjct: 261 NNGQLEQIVDPNLADK----IRPESLRKFGDTAVKCLALSSEDRPSMGDV 306

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  137 bits (347), Expect = 1e-38
 Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 43/225 (19%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           HR + +L G C+     +LV+ Y+  GS+A  +           PL    R +IA+  A 
Sbjct: 86  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCL---RERPESQPPLDWPKRQRIALGSAR 142

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHIS---------- 200
            +AYLH      +I RD K +NIL +EE  A + DF  +  +   +TH++          
Sbjct: 143 GLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHI 202

Query: 201 ------------------------ELLSGLRAFDLARLNEDDGYVVLLDHIKKYFEEDRL 236
                                   EL++G RAFDLARL  DD  V+LLD +K   +E +L
Sbjct: 203 APEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD-VMLLDWVKGLLKEKKL 261

Query: 237 NEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDV 280
             ++D  + G+       ++++    +   C   SP++RP M +V
Sbjct: 262 EALVDVDLQGN----YKDEEVEQLIQVALLCTQSSPMERPKMSEV 302

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  129 bits (328), Expect = 6e-36
 Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 53/234 (22%)

Query: 83  IVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL 142
           I   ++  H  + +L+G   +     LV+ Y+  GSL DR+           PL    R 
Sbjct: 81  IKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS----CLDGTPPLSWHMRC 136

Query: 143 KIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE-THIS- 200
           KIA   AN I +LH       I RD K +NIL +E   AK+ DF  + +  +   T ++ 
Sbjct: 137 KIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTS 193

Query: 201 --------------------------------ELLSGLRAFDLARLNEDDGYVVLLDHIK 228
                                           E+++GL A D  R  +      LLD  +
Sbjct: 194 RIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQL-----LLDIKE 248

Query: 229 KYFEEDR-LNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDV 280
           +  +E++ + + ID   M D     +   ++A   +  +C++E    RP +  V
Sbjct: 249 EIEDEEKTIEDYIDKK-MND----ADSTSVEAMYSVASQCLHEKKNKRPDIKKV 297

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 87.1 bits (216), Expect = 6e-20
 Identities = 52/313 (16%), Positives = 86/313 (27%), Gaps = 71/313 (22%)

Query: 26  FCAEELKTTHNAIKNGYKLYEGFFQN--RPISGFFQERPVSVMKFDESKPRTYDCCINNI 83
              E L      ++       G F    +          V+V  F     +++      +
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWK---AQLLNEYVAVKIFPIQDKQSWQN-EYEV 69

Query: 84  VYASQMIHRCIFKLIGCCLETQIP----ILVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
                M H  I + IG             L+  +   GSL+D ++           +   
Sbjct: 70  YSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLK--------ANVVSWN 121

Query: 140 HRLKIAMDIANAIAYLH------VGFPRPVIF-RDFKLSNILFNEENVAKLFDFSFSISI 192
               IA  +A  +AYLH          +P I  RD K  N+L      A + DF  ++  
Sbjct: 122 ELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKF 181

Query: 193 PEGETHIS-------------ELLSGLRAFDLARLNEDDGY---VVLL------DHIKKY 230
             G++                E+L G   F        D Y   +VL             
Sbjct: 182 EAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGP 241

Query: 231 FEEDRL--------------------NEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNE 270
            +E  L                    ++   P++   R        +      I EC + 
Sbjct: 242 VDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVL---RDYWQKHAGMAMLCETIEECWDH 298

Query: 271 SPVDRP-MVDVAK 282
               R     V +
Sbjct: 299 DAEARLSAGCVGE 311

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 84.3 bits (209), Expect = 4e-19
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           S++ H  I KL G C       LV EY   GSL + +                H +   +
Sbjct: 56  SRVNHPNIVKLYGAC--LNPVCLVMEYAEGGSLYNVLHGAEPL----PYYTAAHAMSWCL 109

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFS 189
             +  +AYLH   P+ +I RD K  N+L      V K+ DF  +
Sbjct: 110 QCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTA 153

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 91  HRCIFKLIGCCLETQIPIL--VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDI 148
           H  +  ++G C     P    +  ++  GSL + +      +  +  +  +  +K A+D+
Sbjct: 66  HPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLH-----EGTNFVVDQSQAVKFALDM 120

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKL--FDFSFSIS 191
           A  +A+LH      +        +++ +E+  A++   D  FS  
Sbjct: 121 ARGMAFLH-TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ 164

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 78.9 bits (195), Expect = 3e-17
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 14/108 (12%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           S + H  I KL G       P +V E++ CG L  R+        +  P+  + +L++ +
Sbjct: 78  SNLNHPNIVKLYGLM--HNPPRMVMEFVPCGDLYHRLLD------KAHPIKWSVKLRLML 129

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-----VAKLFDFSFS 189
           DIA  I Y+      P++ RD +  NI     +      AK+ DF  S
Sbjct: 130 DIALGIEYMQ-NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS 176

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 78.5 bits (194), Expect = 6e-17
 Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 30/153 (19%)

Query: 37  AIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFK 96
           A+K    L E  F    ++ F +E  V++M                     ++ H  I  
Sbjct: 64  AVK---ILMEQDFHAERVNEFLRE--VAIM--------------------KRLRHPNIVL 98

Query: 97  LIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLH 156
            +G   +     +V EY++ GSL   +          E L    RL +A D+A  + YLH
Sbjct: 99  FMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGA----REQLDERRRLSMAYDVAKGMNYLH 154

Query: 157 VGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
                P++ R+ K  N+L +++   K+ DF  S
Sbjct: 155 -NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLS 186

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 75.8 bits (187), Expect = 3e-16
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 16/104 (15%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  I  L G CL+     LV E+   G L   +     P            +  A+ IA 
Sbjct: 65  HPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIP--------PDILVNWAVQIAR 116

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEE--------NVAKLFDF 186
            + YLH     P+I RD K SNIL  ++         + K+ DF
Sbjct: 117 GMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDF 160

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
             + H  + K IG   + +    + EYI  G+L   I+              + R+  A 
Sbjct: 62  RCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMD------SQYPWSQRVSFAK 115

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET 197
           DIA+ +AYLH      +I RD    N L  E     + DF  +  + + +T
Sbjct: 116 DIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT 163

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 73.3 bits (180), Expect = 4e-15
 Identities = 36/258 (13%), Positives = 67/258 (25%), Gaps = 70/258 (27%)

Query: 87  SQMIHRCIFKLIGCCLETQIPI-----LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR 141
             M H  I + I               LV EY   GSL   + +H +             
Sbjct: 62  PLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVS--------S 113

Query: 142 LKIAMDIANAIAYLHVGFPR------PVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG 195
            ++A  +   +AYLH   PR       +  RD    N+L   +    + DF  S+ +   
Sbjct: 114 CRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGN 173

Query: 196 ETHIS-------------------ELLSGLRAFD---------------------LARLN 215
                                   E+L G                            R  
Sbjct: 174 RLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCT 233

Query: 216 EDDGYVVLLDHIKKYFEEDRLNEIIDPLI-----MGDR-----SCSGNQQQLQAFAHLIF 265
           +      + ++   +  E   +   + +         R     +   N   +++    I 
Sbjct: 234 DLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIE 293

Query: 266 ECVNESPVDRP-MVDVAK 282
           +C ++    R       +
Sbjct: 294 DCWDQDAEARLTAQXAEE 311

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 17/122 (13%)

Query: 87  SQMIHRCIFKLIGCCLETQIPI----LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL 142
             M H  I   I   ++         L+ +Y   GSL D ++           L     L
Sbjct: 86  VLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLK--------STTLDAKSML 137

Query: 143 KIAMDIANAIAYLHVGFPR-----PVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET 197
           K+A    + + +LH           +  RD K  NIL  +     + D   ++       
Sbjct: 138 KLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTN 197

Query: 198 HI 199
            +
Sbjct: 198 EV 199

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 17/122 (13%)

Query: 87  SQMIHRCIFKLIGCCLETQIPI----LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL 142
             + H  I   I   + ++       L+  Y   GSL D +++          L     L
Sbjct: 57  VMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLT--------TLDTVSCL 108

Query: 143 KIAMDIANAIAYLHVGFPR-----PVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET 197
           +I + IA+ +A+LH+          +  RD K  NIL  +     + D   ++   +   
Sbjct: 109 RIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTN 168

Query: 198 HI 199
            +
Sbjct: 169 QL 170

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 70.6 bits (173), Expect = 4e-14
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 17/122 (13%)

Query: 87  SQMIHRCIFKLIGCCLETQIPI----LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL 142
             + H  I   I    +         LV +Y   GSL D +            + +   +
Sbjct: 91  VMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN--------RYTVTVEGMI 142

Query: 143 KIAMDIANAIAYLHVGFP----RPVIF-RDFKLSNILFNEENVAKLFDFSFSISIPEGET 197
           K+A+  A+ +A+LH+       +P I  RD K  NIL  +     + D   ++       
Sbjct: 143 KLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATD 202

Query: 198 HI 199
            I
Sbjct: 203 TI 204

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 69.6 bits (171), Expect = 6e-14
 Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 35/150 (23%)

Query: 37  AIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFK 96
           A+K    L       + +  F  E  V V++                    +  H  I  
Sbjct: 50  AVK---MLNVTAPTPQQLQAFKNE--VGVLR--------------------KTRHVNILL 84

Query: 97  LIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLH 156
            +G     Q+ I V ++    SL   +    T         +   + IA   A  + YLH
Sbjct: 85  FMGYSTAPQLAI-VTQWCEGSSLYHHLHASETK------FEMKKLIDIARQTARGMDYLH 137

Query: 157 VGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
               + +I RD K +NI  +E+N  K+ DF
Sbjct: 138 A---KSIIHRDLKSNNIFLHEDNTVKIGDF 164

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 67.0 bits (164), Expect = 6e-13
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  +   +G C+      ++       +L   +R           L +    +IA +I  
Sbjct: 88  HENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRD------AKIVLDVNKTRQIAQEIVK 141

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
            + YLH    + ++ +D K  N+ ++   V  + DF
Sbjct: 142 GMGYLHA---KGILHKDLKSKNVFYDNGKV-VITDF 173

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 10/112 (8%)

Query: 79  CINNIVYASQMIHRCIFKLIGCCLETQIP----ILVFEYINCGSLADRIRIHHTPQPQHE 134
                       H  I +L+  CL  +       L+  +   G+L + I        +  
Sbjct: 73  AQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKD---KGN 129

Query: 135 PLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
            L     L + + I   +  +H    +    RD K +NIL  +E    L D 
Sbjct: 130 FLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDL 178

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 91  HRCIFKLIGCCLETQIPIL-VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIA 149
           H  I +LIG C + Q PI  V E +  G     +R           L +   L++  D A
Sbjct: 171 HPNIVRLIGVCTQKQ-PIYIVMELVQGGDFLTFLRTE------GARLRVKTLLQMVGDAA 223

Query: 150 NAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
             + YL     +  I RD    N L  E+NV K+ DF  S    +G 
Sbjct: 224 AGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGV 267

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLAD---RIRIHHTPQPQHEPLLLTHRLKIAMD 147
              + +L+G   + Q  +++ E +  G L      +R      P   P  L+  +++A +
Sbjct: 87  CHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGE 146

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           IA+ +AYL+       + RD    N +  E+   K+ DF  +
Sbjct: 147 IADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMT 185

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 91  HRCIFKLIGCCLETQI-PI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDI 148
           H  I K  G C E     I L+ E++  GSL + +  +         + L  +LK A+ I
Sbjct: 82  HENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNK------NKINLKQQLKYAVQI 135

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
              + YL     R  + RD    N+L   E+  K+ DF  + +I   +
Sbjct: 136 CKGMDYLGS---RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK 180

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 87  SQMIHRCIFKLIGCCLETQI-PI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKI 144
             + H  I K  G C       + L+ EY+  GSL D ++ H       E +     L+ 
Sbjct: 66  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK------ERIDHIKLLQY 119

Query: 145 AMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
              I   + YL     +  I RD    NIL   EN  K+ DF  +  +P+ +
Sbjct: 120 TSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDK 168

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 88  QMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           Q+ H  + +L+G  +E +  + +V EY+  GSL D +R           L     LK ++
Sbjct: 242 QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR-----SRGRSVLGGDCLLKFSL 296

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           D+  A+ YL        + RD    N+L +E+NVAK+ DF  +
Sbjct: 297 DVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT 336

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 91  HRCIFKLIGCCLETQI-PI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL-KIAMD 147
              I K  G         + LV EY+  G L D ++       +H   L   RL   +  
Sbjct: 83  SDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQ-------RHRARLDASRLLLYSSQ 135

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           I   + YL     R  + RD    NIL   E   K+ DF  +  +P  +
Sbjct: 136 ICKGMEYLGS---RRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDK 181

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 83  IVYASQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR 141
           +   + + +       G  +     + +++EY+   S+             +   +    
Sbjct: 94  LQIITDIKNEYCLTCEGI-ITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQV 152

Query: 142 -LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
              I   + N+ +Y+H    + +  RD K SNIL ++    KL DF  S  + + +  
Sbjct: 153 IKCIIKSVLNSFSYIH--NEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIK 208

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 87  SQMIHRCIFKLIGCCLET-QIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKI 144
             + H  I K  G C    +  + L+ EY+  GSL D ++ H       E +     L+ 
Sbjct: 97  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK------ERIDHIKLLQY 150

Query: 145 AMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
              I   + YL     +  I RD    NIL   EN  K+ DF  +  +P+ +
Sbjct: 151 TSQICKGMEYLGT---KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDK 199

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 88  QMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
            + H  + KL      T+ PI ++ E++  GSL D ++       +     L   +  + 
Sbjct: 239 TLQHDKLVKLHAVV--TKEPIYIITEFMAKGSLLDFLK-----SDEGSKQPLPKLIDFSA 291

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            IA  +A++     R  I RD + +NIL +   V K+ DF  +  I + E
Sbjct: 292 QIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE 338

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMD 147
           ++ H  + +L     E  I I V EY++ GSL D ++         + L L   + +A  
Sbjct: 235 KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGE-----TGKYLRLPQLVDMAAQ 288

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           IA+ +AY+        + RD + +NIL  E  V K+ DF  +  I + E
Sbjct: 289 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 58.4 bits (141), Expect = 7e-10
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMD 147
           ++ H  + +L     E  I I V EY++ GSL D ++         + L L   + +A  
Sbjct: 318 KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGE-----TGKYLRLPQLVDMAAQ 371

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           IA+ +AY+        + RD + +NIL  E  V K+ DF  +  I + E
Sbjct: 372 IASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 417

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 58.7 bits (142), Expect = 7e-10
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 104 TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPV 163
             +  +V EY+   SL              + L +   +   ++I  A++YLH      +
Sbjct: 156 DPVGYIVMEYVGGQSLKRSKG---------QKLPVAEAIAYLLEILPALSYLH---SIGL 203

Query: 164 IFRDFKLSNILFNEENVAKLFDF 186
           ++ D K  NI+  EE + KL D 
Sbjct: 204 VYNDLKPENIMLTEEQL-KLIDL 225

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 13/108 (12%)

Query: 91  HRCIFKLIGCCLETQI-PI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDI 148
           H  I K  GCC +     + LV EY+  GSL D +  H     Q   LLL      A  I
Sbjct: 92  HEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQ---LLL-----FAQQI 143

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
              +AYLH    +  I RD    N+L + + + K+ DF  + ++PEG 
Sbjct: 144 CEGMAYLHA---QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGH 188

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 34/134 (25%)

Query: 88  QMIHRCIFKLIGCCLETQIPIL-VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           Q+ H+ + +L      TQ PI  + EY+  GSL D ++      P    L +   L +A 
Sbjct: 64  QLQHQRLVRLYAVV--TQEPIYIITEYMENGSLVDFLK-----TPSGIKLTINKLLDMAA 116

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGL 206
            IA  +A++     R  I RD + +NIL ++    K+ DF                    
Sbjct: 117 QIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFG------------------- 154

Query: 207 RAFDLARLNEDDGY 220
               LARL ED+ Y
Sbjct: 155 ----LARLIEDNEY 164

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 33/135 (24%)

Query: 88  QMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           ++ H  + +L+G C     P  ++ E++  G+L D +R     +   + +     L +A 
Sbjct: 272 EIKHPNLVQLLGVCTREP-PFYIITEFMTYGNLLDYLR-----ECNRQEVSAVVLLYMAT 325

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGL 206
            I++A+ YL     +  I R+    N L  E ++ K+ DF                    
Sbjct: 326 QISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFG------------------- 363

Query: 207 RAFDLARLNEDDGYV 221
               L+RL   D Y 
Sbjct: 364 ----LSRLMTGDTYT 374

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 91  HRCIFKLIGCCLETQ------IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKI 144
           H  + KL+G  L ++      IP+++  ++  G L   +            L L   ++ 
Sbjct: 84  HPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLL-ASRIGENPFNLPLQTLVRF 142

Query: 145 AMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            +DIA  + YL     R  I RD    N +  E+    + DF  S
Sbjct: 143 MVDIACGMEYLSS---RNFIHRDLAARNCMLAEDMTVCVADFGLS 184

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL-KIAM 146
            + +  + +L+G CL + + + + + +  G L D +R       +H+  + +  L    +
Sbjct: 73  SVDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR-------EHKDNIGSQYLLNWCV 124

Query: 147 DIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            IA  + YL         + RD    N+L       K+ DF  +  +   E
Sbjct: 125 QIAKGMNYLEDRRL----VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE 171

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 45/183 (24%)

Query: 17  KGKYNPIRSFCAEELKTTHNAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTY 76
           KG Y         +      A+K    L               E   +VM+         
Sbjct: 35  KGYYQM-------KKVVKTVAVKI---LKNEANDPALKDELLAE--ANVMQ--------- 73

Query: 77  DCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPL 136
                      Q+ +  I ++IG C      + V E    G L   ++       Q+  +
Sbjct: 74  -----------QLDNPYIVRMIGICEAESWML-VMEMAELGPLNKYLQ-------QNRHV 114

Query: 137 LLTHRLKIAMDIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG 195
              + +++   ++  + YL    F    + RD    N+L   ++ AK+ DF  S ++   
Sbjct: 115 KDKNIIELVHQVSMGMKYLEESNF----VHRDLAARNVLLVTQHYAKISDFGLSKALRAD 170

Query: 196 ETH 198
           E +
Sbjct: 171 ENY 173

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 9/86 (10%), Positives = 20/86 (23%), Gaps = 4/86 (4%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           L+    +   L                  +     +   +    A L     + ++   F
Sbjct: 165 LLMPAASV-DLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQS---KGLVHGHF 220

Query: 169 KLSNILFNEENVAKLFDFSFSISIPE 194
              N+    +    L D S    +  
Sbjct: 221 TPDNLFIMPDGRLMLGDVSALWKVGT 246

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 15/113 (13%)

Query: 87  SQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLL-LTHRLKI 144
            ++ H  + +L G CLE   PI LV E++  G L+D +R           L      L +
Sbjct: 58  MKLSHPKLVQLYGVCLEQA-PICLVTEFMEHGCLSDYLR-------TQRGLFAAETLLGM 109

Query: 145 AMDIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            +D+   +AYL         I RD    N L  E  V K+ DF  +  + + +
Sbjct: 110 CLDVCEGMAYLEEACV----IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ 158

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 91  HRCIFKLIGCCLETQ-----IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIA 145
           H  + +L+G C+E        P+++  ++  G L   +  +   +   + + L   LK  
Sbjct: 95  HPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLL-YSRLETGPKHIPLQTLLKFM 153

Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
           +DIA  + YL     R  + RD    N +  ++    + DF
Sbjct: 154 VDIALGMEYLSN---RNFLHRDLAARNCMLRDDMTVCVADF 191

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 87  SQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIA 145
             + H  + +L G C + + PI ++ EY+  G L + +R     + Q + L     L++ 
Sbjct: 74  MNLSHEKLVQLYGVCTKQR-PIFIITEYMANGCLLNYLR-EMRHRFQTQQL-----LEMC 126

Query: 146 MDIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            D+  A+ YL    F    + RD    N L N++ V K+ DF  S  + + E
Sbjct: 127 KDVCEAMEYLESKQF----LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 174

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           + M H  I +      E     +V +Y   G L  RI          E  +L       +
Sbjct: 78  ANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRIN-AQKGVLFQEDQIL----DWFV 132

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            I  A+ ++H    R ++ RD K  NI   ++   +L DF  +
Sbjct: 133 QICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIA 172

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL-KIAM 146
            + HR + +L G  L   + + V E    GSL DR+R       +H+   L   L + A+
Sbjct: 77  SLDHRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLR-------KHQGHFLLGTLSRYAV 128

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            +A  + YL     +  I RD    N+L    ++ K+ DF    ++P+ +
Sbjct: 129 QVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND 175

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 55.8 bits (134), Expect = 5e-09
 Identities = 13/100 (13%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINC-GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIA 149
            + + ++     +  +    F Y     +L     +  +    H+ L+   RL++ + + 
Sbjct: 157 KKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVI 216

Query: 150 NAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
             +A LH      ++    +  +I+ ++     L  F   
Sbjct: 217 RLLASLHH---YGLVHTYLRPVDIVLDQRGGVFLTGFEHL 253

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 55.4 bits (133), Expect = 5e-09
 Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 16/114 (14%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMD 147
             +     K     L     +LV E  + G+L + I          + +     +  AM 
Sbjct: 123 PSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAIN--LYKNTPEKVMPQGLVISFAMR 180

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILFNEENVA-----------KLFDFSFSI 190
           +   I  +H      +I  D K  N +     +             L D   SI
Sbjct: 181 MLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSI 231

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 55.4 bits (133), Expect = 6e-09
 Identities = 13/93 (13%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
            ++  +   +L     +  +    H+ L+   RL++ + +   +A LH      ++    
Sbjct: 182 FLYPRMQS-NLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGLVHTYL 237

Query: 169 KLSNILFNEENVAKLFDFSFSISIPEGETHISE 201
           +  +I+ ++     L    F   + +G + +S 
Sbjct: 238 RPVDIVLDQRGGVFLTG--FEHLVRDGASAVSP 268

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 88  QMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           Q+ H  + +L+G  +E +  + +V EY+  GSL D +R           L     LK ++
Sbjct: 70  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR-----SRGRSVLGGDCLLKFSL 124

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           D+  A+ YL        + RD    N+L +E+NVAK+ DF  +
Sbjct: 125 DVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT 164

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH---------HTPQPQHEPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + +R              +   E +     
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
           +     +A  + YL     +  I RD    N+L  E NV K+ DF
Sbjct: 160 VSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADF 201

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 87  SQMIHRCIFKLIGCCLETQIPIL-VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIA 145
               H  +  L+G CL ++   L V  Y+  G L + IR + T  P  + L     +   
Sbjct: 81  KDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIR-NETHNPTVKDL-----IGFG 134

Query: 146 MDIANAIAYLH-VGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           + +A  + YL    F    + RD    N + +E+   K+ DF  +
Sbjct: 135 LQVAKGMKYLASKKF----VHRDLAARNCMLDEKFTVKVADFGLA 175

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 13/106 (12%)

Query: 91  HRCIFKLIGCCLETQIPILV-FEYINCGSLADRIRIH---------HTPQPQHEPLLLTH 140
           H  +  L+G C +   P++V  E+   G+L+  +R                  + L L H
Sbjct: 90  HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 149

Query: 141 RLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
            +  +  +A  + +L     R  I RD    NIL +E+NV K+ DF
Sbjct: 150 LICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDF 192

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 10/107 (9%)

Query: 91  HRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIA 149
           H  + +L+G C     P  ++ E++  G+L D +R     +   + +     L +A  I+
Sbjct: 68  HPNLVQLLGVCTREP-PFYIITEFMTYGNLLDYLR-----ECNRQEVSAVVLLYMATQIS 121

Query: 150 NAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           +A+ YL     +  I RD    N L  E ++ K+ DF  S  +    
Sbjct: 122 SAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 165

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 55.1 bits (132), Expect = 9e-09
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 103 ETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP 162
              +P+L  EY   G L   +          E         +  DI++A+ YLH      
Sbjct: 89  PNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEG----PIRTLLSDISSALRYLH---ENR 141

Query: 163 VIFRDFKLSNILF---NEENVAKLFDFSFSISIPEGE 196
           +I RD K  NI+     +  + K+ D  ++  + +GE
Sbjct: 142 IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGE 178

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 54.6 bits (132), Expect = 9e-09
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMD 147
            + H  I +L+G C  + + + V +Y+  GSL D +R H   +    P LL   L   + 
Sbjct: 71  SLDHAHIVRLLGLCPGSSLQL-VTQYLPLGSLLDHVRQH---RGALGPQLL---LNWGVQ 123

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           IA  + YL       ++ R+    N+L    +  ++ DF  +  +P  +
Sbjct: 124 IAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDD 169

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 54.6 bits (132), Expect = 9e-09
 Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 18/119 (15%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           S+  H+ I + IG  L++    ++ E +  G L   +R       Q   L +   L +A 
Sbjct: 88  SKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 147

Query: 147 DIANAIAYL------HVGFPRPVIFRDFKLSNIL---FNEENVAKLFDFSFSISIPEGE 196
           DIA    YL      H         RD    N L        VAK+ DF  +  I    
Sbjct: 148 DIACGCQYLEENHFIH---------RDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAS 197

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 13/119 (10%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH--------HTPQPQHEPLLL 138
           + + H+ I +  G C E +  ++VFEY+  G L   +R H                PL L
Sbjct: 98  TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGL 157

Query: 139 THRLKIAMDIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
              L +A  +A  + YL  + F    + RD    N L  +  V K+ DF  S  I   +
Sbjct: 158 GQLLAVASQVAAGMVYLAGLHF----VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTD 212

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH---------HTPQPQHEPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + +R              +   E +     
Sbjct: 146 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 205

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
           +     +A  + YL     +  I RD    N+L  E NV K+ DF
Sbjct: 206 VSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADF 247

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           S+  H+ I + IG  L++    ++ E +  G L   +R       Q   L +   L +A 
Sbjct: 129 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 188

Query: 147 DIANAIAYL-HVGFPRPVIFRDFKLSNILFN---EENVAKLFDFSFSISIPEGE 196
           DIA    YL    F    I RD    N L        VAK+ DF  +  I    
Sbjct: 189 DIACGCQYLEENHF----IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAG 238

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH---------HTPQPQHEPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + ++           +      E L     
Sbjct: 134 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 193

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF
Sbjct: 194 VSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADF 235

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
            ++ H  + K  G C +     +V EYI+ G L + +R H       + L  +  L++  
Sbjct: 58  MKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSH------GKGLEPSQLLEMCY 111

Query: 147 DIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           D+   +A+L    F    I RD    N L + +   K+ DF  +  + + +
Sbjct: 112 DVCEGMAFLESHQF----IHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ 158

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMD 147
            + +  + +L+G CL + + + + + +  G L D +R H       + +   + L   + 
Sbjct: 73  SVDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVREHK------DNIGSQYLLNWCVQ 125

Query: 148 IANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           IA  + YL         + RD    N+L       K+ DF  +  +   E
Sbjct: 126 IAKGMNYLEDRRL----VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE 171

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 12/108 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLL-------LTHR-- 141
           H  I  L+G C       L  EY   G+L D +R     +      +       L+ +  
Sbjct: 85  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 144

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           L  A D+A  + YL     +  I RD    NIL  E  VAK+ DF  S
Sbjct: 145 LHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLS 189

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 10/106 (9%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSL-----ADRIRIHHTPQPQHEPLLLTHR--LK 143
           H  I  L+G C      +++ EY   G L          +   P         + R  L 
Sbjct: 109 HENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLH 168

Query: 144 IAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            +  +A  +A+L     +  I RD    N+L    +VAK+ DF  +
Sbjct: 169 FSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLA 211

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  I KLIG   E    I + E    G L   +   +    +   L+L      ++ I  
Sbjct: 72  HPHIVKLIGIIEEEPTWI-IMELYPYGELGHYLE-RNKNSLKVLTLVL-----YSLQICK 124

Query: 151 AIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISE 201
           A+AYL  +      + RD  + NIL       KL DF  S  I + + + + 
Sbjct: 125 AMAYLESINC----VHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKAS 172

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH---------HTPQPQHEPLL 137
           + + H  I K  G C +    I+VFEY+  G L   +R H           P+     L 
Sbjct: 72  TNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELG 131

Query: 138 LTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           L+  L IA  IA+ + YL     +  + RD    N L     + K+ DF  S
Sbjct: 132 LSQMLHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGMS 180

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 7/151 (4%)

Query: 36  NAIKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIF 95
             ++      E   +                 +  S P   D     I        +   
Sbjct: 65  GIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTV 124

Query: 96  KLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYL 155
             +          +  +     +L D +    + + +   + L     I + IA A+ +L
Sbjct: 125 GQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCL----HIFIQIAEAVEFL 180

Query: 156 HVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
           H    + ++ RD K SNI F  ++V K+ DF
Sbjct: 181 H---SKGLMHRDLKPSNIFFTMDDVVKVGDF 208

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
            Q+ +  I +LIG C    + + V E    G L   +          E + +++  ++  
Sbjct: 65  HQLDNPYIVRLIGVCQAEALML-VMEMAGGGPLHKFLVGKR------EEIPVSNVAELLH 117

Query: 147 DIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            ++  + YL    F    + RD    N+L    + AK+ DF  S ++   +
Sbjct: 118 QVSMGMKYLEEKNF----VHRDLAARNVLLVNRHYAKISDFGLSKALGADD 164

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 87  SQMIHRCIFKLIGCCLETQIPIL-VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIA 145
               H  +  L+G CL ++   L V  Y+  G L + IR + T  P  + L     +   
Sbjct: 145 KDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIR-NETHNPTVKDL-----IGFG 198

Query: 146 MDIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           + +A  + +L    F    + RD    N + +E+   K+ DF  +
Sbjct: 199 LQVAKGMKFLASKKF----VHRDLAARNCMLDEKFTVKVADFGLA 239

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFK 169
             +     +L D +    T + +   + L     I + IA A+ +LH    + ++ RD K
Sbjct: 93  QMQLCRKENLKDWMNGRCTIEERERSVCL----HIFLQIAEAVEFLH---SKGLMHRDLK 145

Query: 170 LSNILFNEENVAKLFDF 186
            SNI F  ++V K+ DF
Sbjct: 146 PSNIFFTMDDVVKVGDF 162

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 88  QMIHRCIFKLIGCCLETQIPIL-VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           Q  H  I +L G     +   + V EY+  GSL   +R  H  Q     L     + +  
Sbjct: 106 QFDHPNIIRLEGVVTRGR-LAMIVTEYMENGSLDTFLR-THDGQFTIMQL-----VGMLR 158

Query: 147 DIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
            +   + YL  +G+    + RD    N+L +   V K+ DF
Sbjct: 159 GVGAGMRYLSDLGY----VHRDLAARNVLVDSNLVCKVSDF 195

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 12/110 (10%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMD 147
           Q+ +  I +LIG C    + + V E    G L   +          E + +++  ++   
Sbjct: 392 QLDNPYIVRLIGVCQAEALML-VMEMAGGGPLHKFLVGKR------EEIPVSNVAELLHQ 444

Query: 148 IANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           ++  + YL    F    + R+    N+L    + AK+ DF  S ++   +
Sbjct: 445 VSMGMKYLEEKNF----VHRNLAARNVLLVNRHYAKISDFGLSKALGADD 490

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
            Q  H  I KLIG   E  + I + E    G L   ++           L+       A 
Sbjct: 71  RQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQ-VRKYSLDLASLI-----LYAY 123

Query: 147 DIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            ++ A+AYL    F    + RD    N+L +  +  KL DF  S  + +  
Sbjct: 124 QLSTALAYLESKRF----VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 170

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 52.2 bits (125), Expect = 6e-08
 Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 8/128 (6%)

Query: 65  VMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIR 124
            +  +             +  +    H  I       +      +V  ++  GS  D I 
Sbjct: 59  RINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLIC 118

Query: 125 IHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF 184
             H     +E  +      I   +  A+ Y+H       + R  K S+IL + +    L 
Sbjct: 119 -THFMDGMNELAIAY----ILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLS 170

Query: 185 DFSFSISI 192
               ++S+
Sbjct: 171 GLRSNLSM 178

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 14/110 (12%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH-----------HTPQPQHEPLLLT 139
           H  I  L+G C      +++ EY   G L + +R                +     L L 
Sbjct: 86  HMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLE 145

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
             L  +  +A  +A+L     +  I RD    NIL     + K+ DF  +
Sbjct: 146 DLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLA 192

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 52.2 bits (125), Expect = 8e-08
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
            Q  H  I KLIG   E  + I + E    G L   ++           L+       A 
Sbjct: 446 RQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQ-VRKFSLDLASLI-----LYAY 498

Query: 147 DIANAIAYLH-VGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            ++ A+AYL    F    + RD    N+L +  +  KL DF  S  + +  
Sbjct: 499 QLSTALAYLESKRF----VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 545

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 87  SQMIHRCIFKLIGCCLETQIPIL--VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKI 144
            ++ H  I +     ++     L  V EY   G LA  I        + + L     L++
Sbjct: 60  RELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKG---TKERQYLDEEFVLRV 116

Query: 145 AMDIANAIAYLH--VGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
              +  A+   H        V+ RD K +N+  + +   KL DF  +
Sbjct: 117 MTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA 163

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH-HTPQPQHEPLLLTHRLKIA 145
            Q+ H  + K     +E     +V E  + G L+  I+      +   E  +     K  
Sbjct: 87  KQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVW----KYF 142

Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           + + +A+ ++H    R V+ RD K +N+      V KL D    
Sbjct: 143 VQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLG 183

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
            Q  H  I +L G   +++  ++V EY+  GSL   +R H     Q   + L   + +  
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH---DAQFTVIQL---VGMLR 154

Query: 147 DIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
            IA+ + YL  +G+    + RD    NIL N   V K+ DF   
Sbjct: 155 GIASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLG 194

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
              I +L    +  Q   +V E  N   L   ++       + + +    R     ++  
Sbjct: 87  SDKIIRLYDYEITDQYIYMVMECGN-IDLNSWLK-------KKKSIDPWERKSYWKNMLE 138

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHI 199
           A+  +H      ++  D K +N L  +  + KL DF  +  +    T +
Sbjct: 139 AVHTIH---QHGIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSV 183

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
            Q  H  I +L G   + +  +++ EY+  G+L   +R     +     L     + +  
Sbjct: 101 GQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLR-EKDGEFSVLQL-----VGMLR 154

Query: 147 DIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
            IA  + YL ++ +    + RD    NIL N   V K+ DF
Sbjct: 155 GIAAGMKYLANMNY----VHRDLAARNILVNSNLVCKVSDF 191

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 12/120 (10%)

Query: 83  IVYASQMIHRCIFKLIGCCLETQIPILVFEYINC-GSLADRIRIHHTPQPQHEPLLLTHR 141
             +     H C  +L     E  I  L  E   C  SL           P  E  +    
Sbjct: 108 GSHEKVGQHPCCVRLEQAWEEGGILYLQTEL--CGPSLQQHCEAWGASLP--EAQVW--- 160

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISE 201
                D   A+A+LH    + ++  D K +NI        KL DF   + +        +
Sbjct: 161 -GYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQ 216

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
              I +L    +  Q   +V E  N   L   ++       + + +    R     ++  
Sbjct: 68  SDKIIRLYDYEITDQYIYMVMECGN-IDLNSWLK-------KKKSIDPWERKSYWKNMLE 119

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHI 199
           A+  +H      ++  D K +N L  +  + KL DF  +  +    T +
Sbjct: 120 AVHTIH---QHGIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSV 164

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 14/110 (12%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH---------HTPQPQHEPLL 137
           +++ H  +  L+G   + Q   ++F Y + G L + + +             +     L 
Sbjct: 67  ARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALE 126

Query: 138 LTHRLKIAMDIANAIAYL-HVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
               + +   IA  + YL         + +D    N+L  ++   K+ D 
Sbjct: 127 PPDFVHLVAQIAAGMEYLSSHHV----VHKDLATRNVLVYDKLNVKISDL 172

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 16/110 (14%)

Query: 83  IVYASQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR 141
           I     + H+ +    G   E    + +V E     SL +  +             LT  
Sbjct: 92  ISIHRSLAHQHVVGFHGF-FEDNDFVFVVLELCRRRSLLELHKRRKA---------LTEP 141

Query: 142 L--KIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
                   I     YLH      VI RD KL N+  NE+   K+ DF  +
Sbjct: 142 EARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA 188

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 26/113 (23%), Positives = 37/113 (32%), Gaps = 20/113 (17%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSL-----------------ADRIRIHHTPQPQH 133
           H  + KL G C +    +L+ EY   GSL                            P  
Sbjct: 85  HPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDE 144

Query: 134 EPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
             L +   +  A  I+  + YL       ++ RD    NIL  E    K+ DF
Sbjct: 145 RALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAARNILVAEGRKMKISDF 194

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 15/113 (13%)

Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
           I  I    Q     + K  G   +     +V EY   GS++D IR+ +    + E     
Sbjct: 72  IKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDE----- 126

Query: 140 HRLKIAM---DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
               IA         + YLH       I RD K  NIL N E  AKL DF  +
Sbjct: 127 ----IATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVA 172

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 103 ETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP 162
           E     LV EYI   +L++ I         H PL +   +     I + I + H      
Sbjct: 82  EDDCYYLVMEYIEGPTLSEYIE-------SHGPLSVDTAINFTNQILDGIKHAH---DMR 131

Query: 163 VIFRDFKLSNILFNEENVAKLFDF 186
           ++ RD K  NIL +     K+FDF
Sbjct: 132 IVHRDIKPQNILIDSNKTLKIFDF 155

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 13/112 (11%)

Query: 91  HRCIFKLIGC--CLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDI 148
           H+ I KL        T+  +L+ E+  CGSL   +          E       L +  D+
Sbjct: 66  HKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEF----LIVLRDV 121

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILF----NEENVAKLFDFSFSISIPEGE 196
              + +L       ++ R+ K  NI+     + ++V KL DF  +  + + E
Sbjct: 122 VGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE 170

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
              I +L    +  Q   +V E  N   L   ++       + + +    R     ++  
Sbjct: 115 SDKIIRLYDYEITDQYIYMVMECGN-IDLNSWLK-------KKKSIDPWERKSYWKNMLE 166

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHI 199
           A+  +H      ++  D K +N L  +  + KL DF  +  +    T +
Sbjct: 167 AVHTIH---QHGIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSV 211

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLS 171
           E+++ GSL     +        E +L     K+++ +   + YL       ++ RD K S
Sbjct: 111 EHMDGGSLDQ---VLKKAGRIPEQILG----KVSIAVIKGLTYLREK--HKIMHRDVKPS 161

Query: 172 NILFNEENVAKLFDFSFS 189
           NIL N     KL DF  S
Sbjct: 162 NILVNSRGEIKLCDFGVS 179

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
             + H+ I + +G   E     +  E +  GSL+  +R    P   +E  +         
Sbjct: 74  KHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTI----GFYTK 129

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDF 186
            I   + YLH      ++ RD K  N+L N  + V K+ DF
Sbjct: 130 QILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDF 167

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 83  IVYASQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR 141
           +    Q+ H  I +L     E    + LV E  + G +   ++    P  ++E     H+
Sbjct: 62  VKIHCQLKHPSILELYNY-FEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQ 120

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
                 I   + YLH      ++ RD  LSN+L       K+ DF  +
Sbjct: 121 ------IITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLA 159

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 24/110 (21%)

Query: 87  SQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL--- 142
             + H+ +    G   E    + +V E     SL +  +                 L   
Sbjct: 70  RSLAHQHVVGFHGF-FEDNDFVFVVLELCRRRSLLELHKRRK-------------ALTEP 115

Query: 143 ---KIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
                   I     YLH      VI RD KL N+  NE+   K+ DF  +
Sbjct: 116 EARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA 162

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 13/112 (11%)

Query: 91  HRCIFKLIGC--CLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDI 148
           H+ I KL        T+  +L+ E+  CGSL   +          E       L +  D+
Sbjct: 66  HKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEF----LIVLRDV 121

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILF----NEENVAKLFDFSFSISIPEGE 196
              + +L       ++ R+ K  NI+     + ++V KL DF  +  + + E
Sbjct: 122 VGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE 170

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           +  E+ + G+L   I      +   + L L    ++   I   + Y+H    + +I RD 
Sbjct: 97  IQMEFCDKGTLEQWIE-KRRGEKLDKVLAL----ELFEQITKGVDYIH---SKKLINRDL 148

Query: 169 KLSNILFNEENVAKLFDFSFS 189
           K SNI   +    K+ DF   
Sbjct: 149 KPSNIFLVDTKQVKIGDFGLV 169

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 19/115 (16%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH--------------HTPQPQHEPL 136
           H  I  L+G C  +    L+FEY   G L + +R                   + + +  
Sbjct: 108 HENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLN 167

Query: 137 LLTHR--LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           +LT    L  A  +A  + +L     +  + RD    N+L     V K+ DF  +
Sbjct: 168 VLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLA 219

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 32/123 (26%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSL-----------------ADRIRIHHTP 129
           ++  +  I KL+G C   +   L+FEY+  G L                 +D        
Sbjct: 105 AEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVS 164

Query: 130 QPQHEPLLLTHRLKIAMDIANAIAYL------HVGFPRPVIFRDFKLSNILFNEENVAKL 183
            P   PL    +L IA  +A  +AYL      H         RD    N L  E  V K+
Sbjct: 165 SPGPPPLSCAEQLCIARQVAAGMAYLSERKFVH---------RDLATRNCLVGENMVVKI 215

Query: 184 FDF 186
            DF
Sbjct: 216 ADF 218

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 19/119 (15%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           S++ H+ +    G C+     ILV E++  GSL   ++ +         + +  +L++A 
Sbjct: 67  SKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKN------KNCINILWKLEVAK 120

Query: 147 DIANAIAYL-HVGFPRPVIFRDFKLSNIL--------FNEENVAKLFDFSFSISIPEGE 196
            +A A+ +L         I  +    NIL               KL D   SI++   +
Sbjct: 121 QLAAAMHFLEENTL----IHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKD 175

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 91  HRCIFKLIGCCLETQ-IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIA 149
           H  +  LIG  L  + +P ++  Y+  G L   IR      P  + L     +   + +A
Sbjct: 81  HPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIR-SPQRNPTVKDL-----ISFGLQVA 134

Query: 150 NAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
             + YL     +  + RD    N + +E    K+ DF
Sbjct: 135 RGMEYLAE---QKFVHRDLAARNCMLDESFTVKVADF 168

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 12/106 (11%)

Query: 91  HRCIFKLIGCCLETQIP-------ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLK 143
           H  I +        +          L+   +  G L + +           PL     LK
Sbjct: 85  HPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFL----KKMESRGPLSCDTVLK 140

Query: 144 IAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
           I      A+ ++H   P P+I RD K+ N+L + +   KL DF  +
Sbjct: 141 IFYQTCRAVQHMHRQKP-PIIHRDLKVENLLLSNQGTIKLCDFGSA 185

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 103 ETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP 162
              +P +V EY++  +L D +           P+     +++  D   A+ + H      
Sbjct: 87  AGPLPYIVMEYVDGVTLRDIVH-------TEGPMTPKRAIEVIADACQALNFSH---QNG 136

Query: 163 VIFRDFKLSNILFNEENVAKLFDF 186
           +I RD K +NI+ +  N  K+ DF
Sbjct: 137 IIHRDVKPANIMISATNAVKVMDF 160

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           +  EY   G+L D I   +  Q + E        ++   I  A++Y+H    + +I RD 
Sbjct: 92  IQMEYCENGTLYDLIHSENLNQQRDE------YWRLFRQILEALSYIH---SQGIIHRDL 142

Query: 169 KLSNILFNEENVAKLFDF 186
           K  NI  +E    K+ DF
Sbjct: 143 KPMNIFIDESRNVKIGDF 160

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
           IN I+   +  +  I   +   L      +V EY+  GSL D +    T     E  +  
Sbjct: 65  INEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVV----TETCMDEGQIAA 120

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
               +  +   A+ +LH      VI RD K  NIL   +   KL DF F 
Sbjct: 121 ----VCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFC 163

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 8/121 (6%)

Query: 83  IVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHH-TPQPQHEPLLLTHR 141
             +A    H  + +      E    ++  EY N GSLAD I  ++       E  L    
Sbjct: 62  YAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAEL---- 117

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISE 201
             + + +   + Y+H      ++  D K SNI  +  ++                  + +
Sbjct: 118 KDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFK 174

Query: 202 L 202
           +
Sbjct: 175 I 175

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 13/108 (12%)

Query: 87  SQMIHRCIFKLIGCCLETQIP----ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL 142
             + H  I +       T       +LV E +  G+L   ++       + + + +    
Sbjct: 80  KGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK-------RFKVMKIKVLR 132

Query: 143 KIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFS 189
                I   + +LH   P P+I RD K  NI         K+ D   +
Sbjct: 133 SWCRQILKGLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLA 179

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           +    IN   LA  +R       +  PL     + I   I +A+   H         RD 
Sbjct: 111 VDMRLINGVDLAAMLR-------RQGPLAPPRAVAIVRQIGSALDAAH---AAGATHRDV 160

Query: 169 KLSNILFNEENVAKLFDF 186
           K  NIL + ++ A L DF
Sbjct: 161 KPENILVSADDFAYLVDF 178

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 17/100 (17%)

Query: 109 LVFEYINC-GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRD 167
           +  E   C  +L + +          EP+ L           + +A+LH      ++ RD
Sbjct: 95  IAIEL--CAATLQEYVEQKDFAHLGLEPITLLQ------QTTSGLAHLH---SLNIVHRD 143

Query: 168 FKLSNILFNEEN-----VAKLFDFSFSISIPEGETHISEL 202
            K  NIL +  N      A + DF     +  G    S  
Sbjct: 144 LKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRR 183

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 9/110 (8%)

Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
           I  I   +   H  I KL+G         ++ E+   G++   +      +   EP +  
Sbjct: 64  IVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIML--ELDRGLTEPQIQV 121

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
               +   +  A+ +LH    + +I RD K  N+L   E   +L DF  S
Sbjct: 122 ----VCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVS 164

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 17/113 (15%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR--LKIAMDI 148
           HR + +LI    E     LVFE +  GS+   I      + +H            +  D+
Sbjct: 70  HRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIH-----KRRH----FNELEASVVVQDV 120

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILF-NEENVA--KLFDFSFSISIPEGETH 198
           A+A+ +LH    + +  RD K  NIL  +   V+  K+ DF     I      
Sbjct: 121 ASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDC 170

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
            N +V      H  + ++    L  +   ++ E++  G+L D +    +    +E  + T
Sbjct: 90  FNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIV----SQVRLNEEQIAT 145

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
               +   +  A+AYLH    + VI RD K  +IL   +   KL DF F 
Sbjct: 146 ----VCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDGRVKLSDFGFC 188

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM---DIANAIAYLHVGFPRPVIF 165
           LV + ++ GS+ D I+ H   + +H+  +L     IA    ++   + YLH       I 
Sbjct: 90  LVMKLLSGGSVLDIIK-HIVAKGEHKSGVLDES-TIATILREVLEGLEYLH---KNGQIH 144

Query: 166 RDFKLSNILFNEENVAKLFDFSFS 189
           RD K  NIL  E+   ++ DF  S
Sbjct: 145 RDVKAGNILLGEDGSVQIADFGVS 168

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 22/96 (22%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL------KIAMDIANAIAYLHVGFPRP 162
           L+ E+   G L   ++ H              R           ++A+A+ Y H    R 
Sbjct: 91  LMLEFAPRGELYKELQKHG-------------RFDEQRSATFMEELADALHYCH---ERK 134

Query: 163 VIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
           VI RD K  N+L   +   K+ DF +S+  P     
Sbjct: 135 VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRR 170

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 18/110 (16%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRI--RIHHTPQPQHEPLLLTHR--LKIAM 146
           H  I +L           LVF+ +  G L D +  ++            L+ +   KI  
Sbjct: 83  HPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVT-----------LSEKETRKIMR 131

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
            +   I  LH      ++ RD K  NIL +++   KL DF FS  +  GE
Sbjct: 132 ALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGE 178

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 11/96 (11%)

Query: 102 LETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP 160
           +ET+  + L+ EY + G + D +         H  +           I +A+ Y H    
Sbjct: 83  IETEKTLYLIMEYASGGEVFDYLV-------AHGRMKEKEARSKFRQIVSAVQYCH---Q 132

Query: 161 RPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           + ++ RD K  N+L + +   K+ DF FS     G 
Sbjct: 133 KRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG 168

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 65  VMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIR 124
           ++  +E++    D     I   SQ     + K  G  L+     ++ EY+  GS  D + 
Sbjct: 54  IIDLEEAEDEIEDI-QQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE 112

Query: 125 IHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF 184
               P P  E  + T    I  +I   + YLH       I RD K +N+L +E    KL 
Sbjct: 113 ----PGPLDETQIAT----ILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLA 161

Query: 185 DFSFS 189
           DF  +
Sbjct: 162 DFGVA 166

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           +  E +   +            P  E +L     K+ + I  A+ YL       VI RD 
Sbjct: 101 IAMELMGTCAEKL---KKRMQGPIPERILG----KMTVAIVKALYYLK--EKHGVIHRDV 151

Query: 169 KLSNILFNEENVAKLFDFSFS 189
           K SNIL +E    KL DF  S
Sbjct: 152 KPSNILLDERGQIKLCDFGIS 172

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 45.5 bits (108), Expect = 9e-06
 Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 18/114 (15%)

Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC-GSLADRIRIHHTPQPQHEPLLL 138
           I  + +  ++ H    +  GC L      LV EY  C GS +D + +H  P  + E    
Sbjct: 102 IKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY--CLGSASDLLEVHKKPLQEVE---- 155

Query: 139 THRLKIAM---DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
                IA         +AYLH      +I RD K  NIL +E  + KL DF  +
Sbjct: 156 -----IAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSA 201

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 20/111 (18%)

Query: 91  HRCIFKLIGCCLETQIPI-LVFEYINCGSLADRI--RIHHTPQPQHEPLLLTHR--LKIA 145
           H  I  LI    E+   + LVF+ +  G L D +  ++            L+ +    I 
Sbjct: 159 HPHIITLIDSY-ESSSFMFLVFDLMRKGELFDYLTEKVA-----------LSEKETRSIM 206

Query: 146 MDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
             +  A+++LH      ++ RD K  NIL ++    +L DF FS  +  GE
Sbjct: 207 RSLLEAVSFLHA---NNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGE 254

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 109 LVFEYINC--GSLADRIRIHHTPQPQHEPLLLTHRLKIAM-DIANAIAYLHVGFPRPVIF 165
           LVFE+++       D   + +TP+     L+     K     +   +A+ H      ++ 
Sbjct: 80  LVFEFMDNDLKKYMDSRTVGNTPRGLELNLV-----KYFQWQLLQGLAFCH---ENKILH 131

Query: 166 RDFKLSNILFNEENVAKLFDF 186
           RD K  N+L N+    KL DF
Sbjct: 132 RDLKPQNLLINKRGQLKLGDF 152

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H CI K+           +V E +  G L D++ + +    +    L  +       +  
Sbjct: 199 HPCIIKIKNFFDAEDY-YIVLELMEGGELFDKV-VGNKRLKEATCKLYFY------QMLL 250

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIPEGE 196
           A+ YLH      +I RD K  N+L     E+ + K+ DF  S  + E  
Sbjct: 251 AVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETS 296

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 17/110 (15%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           +  E  N  +L D +   +      +     + + +   IA+ +A+LH      +I RD 
Sbjct: 86  IALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDL 141

Query: 169 KLSNILFNEENV-------------AKLFDFSFSISIPEGETHISELLSG 205
           K  NIL +  +                + DF     +  G++     L+ 
Sbjct: 142 KPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNN 191

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 22/96 (22%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL------KIAMDIANAIAYLHVGFPRP 162
           L+ EY   G++   ++                +           ++ANA++Y H    + 
Sbjct: 86  LILEYAPLGTVYRELQKLS-------------KFDEQRTATYITELANALSYCH---SKR 129

Query: 163 VIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
           VI RD K  N+L       K+ DF +S+  P     
Sbjct: 130 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 165

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           +  E ++        ++    Q   E +L     KIA+ I  A+ +LH      VI RD 
Sbjct: 83  ICMELMDTSLDKFYKQVIDKGQTIPEDILG----KIAVSIVKALEHLHSK--LSVIHRDV 136

Query: 169 KLSNILFNEENVAKLFDFSFS 189
           K SN+L N     K+ DF  S
Sbjct: 137 KPSNVLINALGQVKMCDFGIS 157

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           +VFE +N G + +            +PL          D+   I YLH    + +I RD 
Sbjct: 115 MVFELVNQGPVMEVP--------TLKPLSEDQARFYFQDLIKGIEYLHY---QKIIHRDI 163

Query: 169 KLSNILFNEENVAKLFDFSFS 189
           K SN+L  E+   K+ DF  S
Sbjct: 164 KPSNLLVGEDGHIKIADFGVS 184

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR--LKIAMDIANAIAYLHVGFPRPVIFR 166
           +V E ++ G L  RI+              T R   +I   I  AI YLH      +  R
Sbjct: 136 IVMECLDGGELFSRIQ-------DRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHR 185

Query: 167 DFKLSNILF---NEENVAKLFDFSFSISIPEGET 197
           D K  N+L+       + KL DF F+       +
Sbjct: 186 DVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS 219

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 14/105 (13%)

Query: 91  HRCIFKLIGCCLETQIPI------LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKI 144
           HR I    G  ++   P       LV E+   GS+ D I+         E  +      I
Sbjct: 80  HRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNT-KGNTLKEEWIAY----I 134

Query: 145 AMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
             +I   +++LH      VI RD K  N+L  E    KL DF  S
Sbjct: 135 CREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVS 176

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 13/112 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR--LKIAMDI 148
           H  I K+     +     +V E    G L +RI +    + +     L+     ++   +
Sbjct: 79  HPNIIKIFEVFEDYHNMYIVMETCEGGELLERI-VSAQARGKA----LSEGYVAELMKQM 133

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIPEGET 197
            NA+AY H    + V+ +D K  NILF   +  +  K+ DF  +      E 
Sbjct: 134 MNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEH 182

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 15/93 (16%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR--LKIAMDIANAIAYLHVGFPRPVIFR 166
           ++ E +  G L  RI+       +      T R   +I  DI  AI +LH      +  R
Sbjct: 103 IIMECMEGGELFSRIQ-------ERGDQAFTEREAAEIMRDIGTAIQFLHS---HNIAHR 152

Query: 167 DFKLSNILF---NEENVAKLFDFSFSISIPEGE 196
           D K  N+L+    ++ V KL DF F+    +  
Sbjct: 153 DVKPENLLYTSKEKDAVLKLTDFGFAKETTQNA 185

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL--KIAMDI 148
           H  I +L+       +  +VFE+++   L   I      +      + +  +       I
Sbjct: 85  HPHIVELLETYSSDGMLYMVFEFMDGADLCFEI-----VKRADAGFVYSEAVASHYMRQI 139

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILF-NEENVA--KLFDFSFSISIPEGETHISEL 202
             A+ Y H      +I RD K   +L  ++EN A  KL  F  +I + E        
Sbjct: 140 LEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGR 193

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           + +    I  L G   E     +  E +  GSL   I+      P  E   L        
Sbjct: 105 AGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIK-QMGCLP--EDRALY----YLG 157

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEE-NVAKLFDFSFS 189
                + YLH    R ++  D K  N+L + + + A L DF  +
Sbjct: 158 QALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHA 198

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 109 LVFEYINCGSLAD--RIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFR 166
           +  E ++  S     +           E +L     KI +    A+ +L       +I R
Sbjct: 98  ICMELMS-TSFDKFYKYVYSVLDDVIPEEILG----KITLATVKALNHLKEN--LKIIHR 150

Query: 167 DFKLSNILFNEENVAKLFDFSFS 189
           D K SNIL +     KL DF  S
Sbjct: 151 DIKPSNILLDRSGNIKLCDFGIS 173

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKI-AMDIANAIAYLHVGFPRPVIFRD 167
            + + +N G L   +            +     ++  A +I   + ++H    R V++RD
Sbjct: 269 FILDLMNGGDLHYHL--------SQHGVFSEADMRFYAAEIILGLEHMH---NRFVVYRD 317

Query: 168 FKLSNILFNEENVAKLFDFSFSISIPEGETH 198
            K +NIL +E    ++ D   +    + + H
Sbjct: 318 LKPANILLDEHGHVRISDLGLACDFSKKKPH 348

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 17/112 (15%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR--LKIAMDI 148
           H  I KL     ++    +V E    G L D I               +     +I   +
Sbjct: 80  HPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKR---------FSEHDAARIIKQV 130

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIPEGET 197
            + I Y+H      ++ RD K  NIL     ++   K+ DF  S    +   
Sbjct: 131 FSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK 179

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 28/154 (18%), Positives = 46/154 (29%), Gaps = 38/154 (24%)

Query: 88  QMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL----- 142
           ++ H  I +L     + Q   LV E  + G L D++ +          + +         
Sbjct: 84  KLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCP 143

Query: 143 ----------------------------KIAMDIANAIAYLHVGFPRPVIFRDFKLSNIL 174
                                        I   I +A+ YLH    + +  RD K  N L
Sbjct: 144 ECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLH---NQGICHRDIKPENFL 200

Query: 175 F--NEENVAKLFDFSFSISIPEGETHISELLSGL 206
           F  N+    KL DF  S    +        ++  
Sbjct: 201 FSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTK 234

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 14/85 (16%)

Query: 103 ETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLH-VGFPR 161
                ++V E+I  GSL +                    ++    +A A    H  G   
Sbjct: 102 TRAGGLVVAEWIRGGSLQEVAD---------TSPSPVGAIRAMQSLAAAADAAHRAG--- 149

Query: 162 PVIFRDFKLSNILFNEENVAKLFDF 186
            V       S +  + +    L   
Sbjct: 150 -VALSIDHPSRVRVSIDGDVVLAYP 173

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 13/110 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  I KL     +     LV E    G L D I          +        +I   + +
Sbjct: 85  HPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEII-------SRKRFSEVDAARIIRQVLS 137

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIPEGET 197
            I Y+H      ++ RD K  N+L    +++   ++ DF  S      + 
Sbjct: 138 GITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKK 184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 42/358 (11%), Positives = 92/358 (25%), Gaps = 111/358 (31%)

Query: 1   MMMNGAKVLEKLISSS-KGKYNPIRSFCAEELKTTHNAIKNGYKLYEG-----FFQNRPI 54
           ++    ++++K +    +  Y     F    +KT         ++Y       +  N+  
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYK----FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 55  SGFFQERPVSVMKFDES----KPRTY-------DC---CINNIVYASQMIHRC----IFK 96
           + +   R    +K  ++    +P                +   V  S  +       IF 
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 97  L-IGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEP---------------LLLTH 140
           L +  C     P  V E +    L  +I  + T +  H                 LL + 
Sbjct: 187 LNLKNC---NSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 141 RLKIAMDI------ANAIAYLHVGFPRPVIFRDFKLSNIL----------------FNEE 178
             +  + +      A A    ++     +  R  ++++ L                   +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 179 NVAKLFDFSFSISI---PEGETHISELLSGLRAFDLARLNEDDGYVVLLDHIK--KYFEE 233
            V  L            P      +     + A     + +       L      K+   
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA---ESIRDG------LATWDNWKHVNC 352

Query: 234 DRLNEII-------DPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRPMVDVAKKT 284
           D+L  II       +P           ++     +  +F      P       +    
Sbjct: 353 DKLTTIIESSLNVLEPAEY--------RKMFDRLS--VF------PPS---AHIPTIL 391

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H CI K+           +V E +  G L D++ + +    +    L  +       +  
Sbjct: 74  HPCIIKIKNFFDAEDY-YIVLELMEGGELFDKV-VGNKRLKEATCKLYFY------QMLL 125

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIPEGE 196
           A+ YLH      +I RD K  N+L     E+ + K+ DF  S  + E  
Sbjct: 126 AVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETS 171

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 13/110 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  I KL     + +   LV E    G L D I IH     + +         I   + +
Sbjct: 95  HPNIMKLYDFFEDKRNYYLVMECYKGGELFDEI-IHRMKFNEVDAA------VIIKQVLS 147

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIPEGET 197
            + YLH      ++ RD K  N+L     ++ + K+ DF  S      + 
Sbjct: 148 GVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKK 194

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHIS 200
           +  A+ YL     + +I RD K  NIL +E     + DF+ +  +P      +
Sbjct: 124 LVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITT 173

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 17/110 (15%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR--LKIAMDI 148
           H  I KL     +     LV E +N G L +RI+              +      I   +
Sbjct: 65  HPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKH---------FSETEASYIMRKL 115

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIPEG 195
            +A++++H      V+ RD K  N+LF   N+    K+ DF F+   P  
Sbjct: 116 VSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD 162

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           LV E+   G L ++I I+     + +         I   I + I YLH      ++ RD 
Sbjct: 123 LVTEFYEGGELFEQI-INRHKFDECDAA------NIMKQILSGICYLH---KHNIVHRDI 172

Query: 169 KLSNILF---NEENVAKLFDFSFSISIPEGET 197
           K  NIL    N     K+ DF  S    +   
Sbjct: 173 KPENILLENKNSLLNIKIVDFGLSSFFSKDYK 204

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 102 LETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP 160
           + T     +V EY++ G L D I   H    + E        ++   I +A+ Y H    
Sbjct: 80  ISTPTDFFMVMEYVSGGELFDYI-CKHGRVEEME------ARRLFQQILSAVDYCH---R 129

Query: 161 RPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
             V+ RD K  N+L +    AK+ DF  S  + +GE
Sbjct: 130 HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 19/113 (16%)

Query: 91  HRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR--LKIAMD 147
           H  I +L     E    I LV E    G L +R+                     +I  D
Sbjct: 65  HPNIIRLYETF-EDNTDIYLVMELCTGGELFERVVHKRV---------FRESDAARIMKD 114

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIPEGET 197
           + +A+AY H      V  RD K  N LF   + ++  KL DF  +     G+ 
Sbjct: 115 VLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKM 164

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 18/112 (16%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR--LKIAMDI 148
           H  I  L     + +   +V E +  G L D+I      + +      + R    +   I
Sbjct: 75  HPNIITLKDVYDDGKYVYVVTELMKGGELLDKIL-----RQKF----FSEREASAVLFTI 125

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILF--NEENVA--KLFDFSFSISIPEGE 196
              + YLH    + V+ RD K SNIL+     N    ++ DF F+  +    
Sbjct: 126 TKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAEN 174

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 22/109 (20%)

Query: 88  QMIHRCIFKLIGCCLETQIPI--------LVFEYINC--GSLADRIRIHHTPQPQHEPLL 137
            + H  +  LI  C     P         LVF++       L   + +            
Sbjct: 72  LLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLV---------KFT 122

Query: 138 LTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
           L+   ++   + N + Y+H      ++ RD K +N+L   + V KL DF
Sbjct: 123 LSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADF 168

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 13/92 (14%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           +V E    G L D I        + +        +I   + + I Y+H      ++ RD 
Sbjct: 98  IVGELYTGGELFDEII-------KRKRFSEHDAARIIKQVFSGITYMH---KHNIVHRDL 147

Query: 169 KLSNILF---NEENVAKLFDFSFSISIPEGET 197
           K  NIL     ++   K+ DF  S    +   
Sbjct: 148 KPENILLESKEKDCDIKIIDFGLSTCFQQNTK 179

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 21/113 (18%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRI--RIHHTPQPQHEPLLLTHR--LKIAM 146
           H  I +L     E     LVF+ +  G L + I  R              +         
Sbjct: 64  HPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREF-----------YSEADASHCIQ 112

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILF--NEENVA-KLFDFSFSISIPEGE 196
            I  +IAY H      ++ R+ K  N+L     +  A KL DF  +I + + E
Sbjct: 113 QILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE 162

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKI-AMDIANAIAYLHVGFPRPVIFRD 167
            V EY N G L   +          E +    R +    +I +A+ YLH    + V++RD
Sbjct: 225 FVMEYANGGELFFHL--------SRERVFSEDRARFYGAEIVSALDYLHS--EKNVVYRD 274

Query: 168 FKLSNILFNEENVAKLFDF 186
            KL N++ +++   K+ DF
Sbjct: 275 LKLENLMLDKDGHIKITDF 293

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 17/111 (15%), Positives = 43/111 (38%), Gaps = 15/111 (13%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR--LKIAMDI 148
           H  +  L     +    ++++E+++ G L +++          E   ++    ++    +
Sbjct: 213 HPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKV--------ADEHNKMSEDEAVEYMRQV 264

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILF--NEENVAKLFDFSFSISIPEGET 197
              + ++H       +  D K  NI+F     N  KL DF  +  +   ++
Sbjct: 265 CKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS 312

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 17/112 (15%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR--LKIAMDI 148
           H  I +L     E     LVF+ +  G L + I               +          I
Sbjct: 87  HPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREF---------YSEADASHCIQQI 137

Query: 149 ANAIAYLHVGFPRPVIFRDFKLSNILF--NEENVA-KLFDFSFSISIPEGET 197
             +IAY H      ++ R+ K  N+L     +  A KL DF  +I + + E 
Sbjct: 138 LESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA 186

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM-DIANAIAYLHVGFPRPVIFRD 167
           LVFEY +  ++   +  +    P+H        +K        A+ + H       I RD
Sbjct: 79  LVFEYCDH-TVLHELDRYQRGVPEHL-------VKSITWQTLQAVNFCHK---HNCIHRD 127

Query: 168 FKLSNILFNEENVAKLFDFSF--SISIP 193
            K  NIL  + +V KL DF F   ++ P
Sbjct: 128 VKPENILITKHSVIKLCDFGFARLLTGP 155

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKI-AMDIANAIAYLHVGFPRPVIFRD 167
           LV   +N G L   I          +      R    A +I   +  LH      +++RD
Sbjct: 261 LVLTLMNGGDLKFHI------YHMGQAGFPEARAVFYAAEICCGLEDLH---RERIVYRD 311

Query: 168 FKLSNILFNEENVAKLFDFSFSISIPEGET 197
            K  NIL ++    ++ D   ++ +PEG+T
Sbjct: 312 LKPENILLDDHGHIRISDLGLAVHVPEGQT 341

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 14/88 (15%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM-DIANAIAYLHVGFPRPVIFRD 167
           LVFE+++  ++ D + +                ++  +  I N I + H      +I RD
Sbjct: 101 LVFEFVDH-TILDDLELFPNGLDYQV-------VQKYLFQIINGIGFCHS---HNIIHRD 149

Query: 168 FKLSNILFNEENVAKLFDFSFS--ISIP 193
            K  NIL ++  V KL DF F+  ++ P
Sbjct: 150 IKPENILVSQSGVVKLCDFGFARTLAAP 177

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 148 IANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
           + +A+ YL     + +I RD K  NI+  E+   KL DF  +  +  G+
Sbjct: 139 LVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGK 184

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKI-AMDIANAIAYLHVGFPRPVIFRD 167
           LV   +N G +    R H     +  P     R       I + + +LH    R +I+RD
Sbjct: 262 LVMTIMNGGDI----RYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRD 314

Query: 168 FKLSNILFNEENVAKLFDFSFSISIPEGET 197
            K  N+L +++   ++ D   ++ +  G+T
Sbjct: 315 LKPENVLLDDDGNVRISDLGLAVELKAGQT 344

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 20/108 (18%)

Query: 87  SQMIHRCIFKLIGCCLETQIPI-----LVFEYINC--GSLADRIRIHHTPQPQHEPLLLT 139
               H  + +L+  C  ++        LVFE+++    +  D+            P L  
Sbjct: 69  EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAP---------PPGLPA 119

Query: 140 HRLKIAM-DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
             +K  M      + +LH      ++ RD K  NIL       KL DF
Sbjct: 120 ETIKDLMRQFLRGLDFLHA---NCIVHRDLKPENILVTSGGTVKLADF 164

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           LVFE+ +   L       +             +L         + + H    R V+ RD 
Sbjct: 78  LVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQL------LKGLGFCHS---RNVLHRDL 127

Query: 169 KLSNILFNEENVAKLFDF 186
           K  N+L N     KL +F
Sbjct: 128 KPQNLLINRNGELKLANF 145

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 39.4 bits (93), Expect = 8e-04
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF 168
           LVFE+++   L   + +               +L       N IAY H    R V+ RD 
Sbjct: 77  LVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQL------LNGIAYCHD---RRVLHRDL 126

Query: 169 KLSNILFNEENVAKLFDF 186
           K  N+L N E   K+ DF
Sbjct: 127 KPQNLLINREGELKIADF 144

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 39.4 bits (92), Expect = 9e-04
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 12/104 (11%)

Query: 91  HRCIFKLIGCCLETQIPI--LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL--KIAM 146
           H  +  L    L        L+F+Y     L   I+ H   +   +P+ L   +   +  
Sbjct: 77  HPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLY 135

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNIL----FNEENVAKLFDF 186
            I + I YLH      V+ RD K +NIL      E    K+ D 
Sbjct: 136 QILDGIHYLHA---NWVLHRDLKPANILVMGEGPERGRVKIADM 176

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 39.4 bits (92), Expect = 9e-04
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 102 LETQIPI-LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP 160
           + T   I +V EY++ G L D I   +    + E        ++   I + + Y H    
Sbjct: 85  ISTPSDIFMVMEYVSGGELFDYI-CKNGRLDEKESR------RLFQQILSGVDYCH---R 134

Query: 161 RPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE 196
             V+ RD K  N+L +    AK+ DF  S  + +GE
Sbjct: 135 HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.98
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.98
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.98
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.98
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.98
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.98
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.98
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.98
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.98
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.97
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.97
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.97
3uqc_A	286	Probable conserved transmembrane protein; structur	99.97
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.97
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.97
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.97
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.97
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.97
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.97
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.97
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.97
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.97
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.97
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.97
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.97
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.97
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.97
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.97
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.97
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.96
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.94
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.91
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.87
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.8
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.66
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.4
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.28
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.18
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.6
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.6
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.58
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.57
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.37
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.25
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.2
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.98
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.92
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.83
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.72
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.22
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.1
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	97.08
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.04
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.76
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.67
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	96.64
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.52
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	96.38
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	96.15
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	95.71
3mes_A	424	Choline kinase; malaria, structural genomics, stru	95.1
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	90.86
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	90.08
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	89.29
3ls8_A	614	Phosphatidylinositol 3-kinase catalytic subunit ty	87.94
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	80.45

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=9.2e-50  Score=338.76  Aligned_cols=247  Identities=19%  Similarity=0.216  Sum_probs=194.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+...  ....++..||||.++.......++|.+|+.+|++++|||||+++|+|..++.+++|||||++|
T Consensus        23 ~G~fG~Vy~a~~~~~--~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G  100 (299)
T 4asz_A           23 EGAFGKVFLAECYNL--CPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHG  100 (299)
T ss_dssp             C--CCCEEEEEECSC--C----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTC
T ss_pred             eCCCcEEEEEEECCc--ccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEcCCCC
Confidence            999999999987410  001157889999998776666778999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhC------CCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          118 SLADRIRIHH------TPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       118 sL~~~l~~~~------~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||.++++.++      ........+++..++.|+.||+.||.|||   +++|+||||||+|||+++++.+||+|||+|+.
T Consensus       101 ~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~  177 (299)
T 4asz_A          101 DLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKIGDFGMSRD  177 (299)
T ss_dssp             BHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCSCHHH
T ss_pred             cHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcEEECCccccee
Confidence            9999996543      11234568999999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCcc-chhhhhcccccccccccCCC-----------CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHH
Q 044211          192 IPEGETH-ISELLSGLRAFDLARLNEDD-----------GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQ  256 (292)
Q Consensus       192 ~~~~~~~-~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (292)
                      ....... ......||+.|++||+....           ||+  ||++ ...|+... ...+++.....+.++. .+..+
T Consensus       178 ~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~-~~~~~~~~i~~~~~~~-~p~~~  255 (299)
T 4asz_A          178 VYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL-SNNEVIECITQGRVLQ-RPRTC  255 (299)
T ss_dssp             HTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS-CHHHHHHHHHHTCCCC-CCTTC
T ss_pred             cCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHcCCCCC-CCccc
Confidence            7544332 23445689999888865422           999  9983 45555443 3344444444444332 23578


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      ++.+.+|+.+||+.||++|| +.+|.+.|+++.+..
T Consensus       256 ~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~  291 (299)
T 4asz_A          256 PQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS  291 (299)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcC
Confidence            88999999999999999999 999999999987654

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=2.6e-49  Score=340.30  Aligned_cols=247  Identities=20%  Similarity=0.214  Sum_probs=188.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+....  ...+++.||||.++.......++|.+|+.+|++++|||||+++|+|...+.+++|||||++|
T Consensus        51 ~G~fG~Vy~a~~~~~~--~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G  128 (329)
T 4aoj_A           51 EGAFGKVFLAECHNLL--PEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHG  128 (329)
T ss_dssp             ECSSEEEEEEEESSSC--C---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTC
T ss_pred             cCCCcEEEEEEECCcc--cCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCC
Confidence            9999999999874100  01157899999998776666778999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCC--------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          118 SLADRIRIHHTP--------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       118 sL~~~l~~~~~~--------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      +|.++++.+...        .....++++..++.|+.|||.||.|||   ..+|+||||||+|||+++++.+||+|||+|
T Consensus       129 ~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~Ki~DFGla  205 (329)
T 4aoj_A          129 DLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVVKIGDFGMS  205 (329)
T ss_dssp             BHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC--
T ss_pred             cHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCCcEEEcccccc
Confidence            999999654321        123467999999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCc-cchhhhhcccccccccccCCC-----------CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCch
Q 044211          190 ISIPEGET-HISELLSGLRAFDLARLNEDD-----------GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       190 ~~~~~~~~-~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
                      +....... .......||+.|++||+....           ||+  ||++ ...|+... ...+.++....+.++ +.+.
T Consensus       206 ~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~-~~~~~~~~i~~g~~~-~~p~  283 (329)
T 4aoj_A          206 RDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQL-SNTEAIDCITQGREL-ERPR  283 (329)
T ss_dssp             --------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSS-CHHHHHHHHHHTCCC-CCCT
T ss_pred             eeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCC-CHHHHHHHHHcCCCC-CCcc
Confidence            87754432 233456799999999865433           999  8983 45555443 333344433333332 2235


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      .+++.+.+|+.+||+.||++|| |.||++.|+.+.+..
T Consensus       284 ~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p  321 (329)
T 4aoj_A          284 ACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP  321 (329)
T ss_dssp             TCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred             cccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCC
Confidence            7889999999999999999999 999999999998754

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.4e-48  Score=332.77  Aligned_cols=244  Identities=15%  Similarity=0.191  Sum_probs=189.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||+||+|.+..  .....+++.||||.++.. .....++|.+|+.++++++|||||+++|+|..++.+++|||||++
T Consensus        36 ~G~fG~Vykg~~~~--~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~  113 (308)
T 4gt4_A           36 EDRFGKVYKGHLFG--PAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSH  113 (308)
T ss_dssp             ECSSCEEEEEEEC---------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCSS
T ss_pred             cCCCcEEEEEEEcC--CccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEcCCC
Confidence            99999999999731  001115688999999754 333457899999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          117 GSLADRIRIHHTPQ---------PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       117 gsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      |||.+++.......         .....+++..++.|+.|||.||.|||   +.+|+||||||+|||+++++.+||+|||
T Consensus       114 G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~~Ki~DFG  190 (308)
T 4gt4_A          114 GDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKLNVKISDLG  190 (308)
T ss_dssp             CBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCSC
T ss_pred             CcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCCCEEECCcc
Confidence            99999995432111         12356999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCC-ccchhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCC
Q 044211          188 FSISIPEGE-THISELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       188 ~a~~~~~~~-~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (292)
                      +|+...... ........||+.|++||+...      +     ||+  ||++ ...|+... ...+++.....+.++ +.
T Consensus       191 lar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~-~~~~~~~~i~~~~~~-~~  268 (308)
T 4gt4_A          191 LFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY-SNQDVVEMIRNRQVL-PC  268 (308)
T ss_dssp             CBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTC-CHHHHHHHHHTTCCC-CC
T ss_pred             cceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHcCCCC-CC
Confidence            998765433 223345678999998886432      2     999  9983 44455433 334444433333332 23


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      +.++++.+.+|+.+||+.||++|| |.||++.|+.+.
T Consensus       269 p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~  305 (308)
T 4gt4_A          269 PDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG  305 (308)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred             cccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence            358899999999999999999999 999999998753

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=6.9e-48  Score=327.49  Aligned_cols=233  Identities=20%  Similarity=0.262  Sum_probs=179.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+|.+.         + .||||.++..  .....+.|.+|+.++++++|||||+++|++.. +.+++|||||+
T Consensus        46 ~G~fG~Vy~~~~~---------~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~  114 (307)
T 3omv_A           46 SGSFGTVYKGKWH---------G-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCE  114 (307)
T ss_dssp             CCSSSEEEEEESS---------S-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCS
T ss_pred             eCCCcEEEEEEEC---------C-cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEcCC
Confidence            9999999999984         3 4999998754  33445789999999999999999999998864 56899999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|||.+++.      .....+++..++.|+.|||.||.|||   +.+|+||||||+|||+++++.+||+|||+|+.....
T Consensus       115 gGsL~~~l~------~~~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~  185 (307)
T 3omv_A          115 GSSLYKHLH------VQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW  185 (307)
T ss_dssp             SCBHHHHHH------TSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred             CCCHHHHHh------hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccC
Confidence            999999993      23457999999999999999999999   899999999999999999999999999999876532


Q ss_pred             C-ccchhhhhcccccccccccC---------CC-----CeE--EEccchhhhhhccchhhhcccccccCCC---CCCchH
Q 044211          196 E-THISELLSGLRAFDLARLNE---------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRS---CSGNQQ  255 (292)
Q Consensus       196 ~-~~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  255 (292)
                      . ........||+.|++||+..         ++     ||+  ||+....||........+......+...   ...+.+
T Consensus       186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~  265 (307)
T 3omv_A          186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKN  265 (307)
T ss_dssp             --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTT
T ss_pred             CcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCccccccc
Confidence            2 22345568999999998642         22     999  9994344554433222222211111111   111246


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +++.+.+|+.+||+.||++|| |.||++.|+.+...
T Consensus       266 ~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~  301 (307)
T 3omv_A          266 CPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS  301 (307)
T ss_dssp             SCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcc
Confidence            788999999999999999999 99999999988754

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=4.7e-47  Score=326.41  Aligned_cols=226  Identities=18%  Similarity=0.248  Sum_probs=184.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||+||+|.+..       +|+.||||.++.......+.+.+|+.+|++++|||||++++++..++.+|+|||||++|
T Consensus        84 ~G~fG~V~~a~~~~-------tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg  156 (346)
T 4fih_A           84 EGSTGIVCIATVRS-------SGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGG  156 (346)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTE
T ss_pred             cCcCeEEEEEEECC-------CCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCC
Confidence            89999999999976       89999999997654445567889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.        ...+++..+..|+.||+.||.|||   +.+|+||||||+|||++.+|.+||+|||+|+.+.....
T Consensus       157 ~L~~~l~--------~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~  225 (346)
T 4fih_A          157 ALTDIVT--------HTRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP  225 (346)
T ss_dssp             EHHHHHH--------HSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC
T ss_pred             cHHHHHH--------cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCC
Confidence            9999993        245899999999999999999999   89999999999999999999999999999987754332


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCC-CCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRS-CSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l  263 (292)
                       .....+||+.|++||+....           ||+  ||+....||.... ..+.+........+ ...+...++.+.+|
T Consensus       226 -~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-~~~~~~~i~~~~~~~~~~~~~~s~~~~dl  303 (346)
T 4fih_A          226 -RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP-PLKAMKMIRDNLPPRLKNLHKVSPSLKGF  303 (346)
T ss_dssp             -CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-HHHHHHHHHHSSCCCCSCGGGSCHHHHHH
T ss_pred             -cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC-HHHHHHHHHcCCCCCCCccccCCHHHHHH
Confidence             23457899999999876533           999  8983344554432 22333322222222 22234678899999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~  283 (292)
                      |.+||+.||++|| +.|+++.
T Consensus       304 i~~~L~~dP~~R~ta~e~l~H  324 (346)
T 4fih_A          304 LDRLLVRDPAQRATAAELLKH  324 (346)
T ss_dssp             HHHHSCSSTTTSCCHHHHTTC
T ss_pred             HHHHcCCChhHCcCHHHHhcC
Confidence            9999999999999 9998763

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=7.4e-47  Score=318.91  Aligned_cols=225  Identities=16%  Similarity=0.235  Sum_probs=180.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeec----CCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE----TQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~----~~~~~lv~  111 (292)
                      +|+||+||+|.+..       ++..||+|.+...  .....+.|.+|+.++++++|||||+++++|..    .+.+++||
T Consensus        36 ~G~fg~Vy~a~~~~-------~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           36 RGSFKTVYKGLDTE-------TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             cCcCcEEEEEEECC-------CCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence            89999999999876       8999999998643  33345679999999999999999999999865    34579999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--cccCCCCCCceEec-CCCceEEeeccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP--VIFRDFKLSNILFN-EENVAKLFDFSF  188 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~--i~H~dlk~~nili~-~~~~~kl~Dfg~  188 (292)
                      |||++|+|.+++++       ...+++..+..|+.||+.||.|||   +++  |+||||||+|||++ .++.+||+|||+
T Consensus       109 Ey~~gg~L~~~l~~-------~~~l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGl  178 (290)
T 3fpq_A          109 ELMTSGTLKTYLKR-------FKVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGL  178 (290)
T ss_dssp             ECCCSCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTG
T ss_pred             eCCCCCCHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCCCCEEEEeCcC
Confidence            99999999999953       346899999999999999999999   776  99999999999998 478999999999


Q ss_pred             ccccCCCCccchhhhhcccccccccccCCC----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHH
Q 044211          189 SISIPEGETHISELLSGLRAFDLARLNEDD----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQ  256 (292)
Q Consensus       189 a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (292)
                      |+.....   .....+||+.|++||+....          ||+  ||+....||........+......+..+...+..+
T Consensus       179 a~~~~~~---~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~  255 (290)
T 3fpq_A          179 ATLKRAS---FAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVA  255 (290)
T ss_dssp             GGGCCTT---SBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCC
T ss_pred             CEeCCCC---ccCCcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCCCCccC
Confidence            9865432   23456899999999976543          988  89844445554444444444333333333222345


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ++.+.+||.+||+.||++|| +.|+++
T Consensus       256 ~~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          256 IPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            67899999999999999999 999976

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.8e-46  Score=323.25  Aligned_cols=228  Identities=17%  Similarity=0.209  Sum_probs=182.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+|.+..       +++.||||.++..  .....+.+.+|+.+|++|+|||||++++++.+++.+|+|||||+
T Consensus        34 ~G~fg~V~~a~~~~-------~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~  106 (350)
T 4b9d_A           34 EGSFGKAILVKSTE-------DGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCE  106 (350)
T ss_dssp             -----CEEEEEETT-------TCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCC
Confidence            99999999999876       8999999999754  23345679999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++...     ....+++..+..|+.||+.||.|||   +.+|+||||||+|||++++|.+||+|||+|+.+...
T Consensus       107 gg~L~~~i~~~-----~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  178 (350)
T 4b9d_A          107 GGDLFKRINAQ-----KGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST  178 (350)
T ss_dssp             TCBHHHHHHHT-----TTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred             CCcHHHHHHHc-----CCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCC
Confidence            99999999532     3456899999999999999999999   899999999999999999999999999999876432


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                       .......+||+.|++||+....           ||+  ||+....||. .....+.+.....+..+... ...++.+.+
T Consensus       179 -~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~-~~~~~~~~~~i~~~~~~~~~-~~~s~~~~~  255 (350)
T 4b9d_A          179 -VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFE-AGSMKNLVLKIISGSFPPVS-LHYSYDLRS  255 (350)
T ss_dssp             -HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHTCCCCCC-TTSCHHHHH
T ss_pred             -cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHcCCCCCCC-ccCCHHHHH
Confidence             1223457899999999876543           999  8883333443 33444444544555443322 467789999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ||.+||+.||++|| +.|+++.
T Consensus       256 li~~~L~~dP~~R~s~~e~l~h  277 (350)
T 4b9d_A          256 LVSQLFKRNPRDRPSVNSILEK  277 (350)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHTS
T ss_pred             HHHHHccCChhHCcCHHHHhcC
Confidence            99999999999999 9999863

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=3.8e-46  Score=323.21  Aligned_cols=248  Identities=17%  Similarity=0.220  Sum_probs=190.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCC-CCccceeeeeecC-CcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIH-RCIFKLIGCCLET-QIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h-~niv~~~~~~~~~-~~~~lv~e~~  114 (292)
                      +|+||.||+|.+...  .....++.||||.++.... ...+.|.+|+.+|++++| ||||+++|+|..+ +.+++|||||
T Consensus        74 ~G~fG~Vy~a~~~~~--~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV~Ey~  151 (353)
T 4ase_A           74 RGAFGQVIEADAFGI--DKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFC  151 (353)
T ss_dssp             ECSSEEEEEEEEETS--SSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECC
T ss_pred             cCCCeEEEEEEEcCC--CcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEEEEcC
Confidence            999999999987420  0112457899999976543 345679999999999975 8999999999764 5689999999


Q ss_pred             CCCChhHHhhhhCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEee
Q 044211          115 NCGSLADRIRIHHTP---------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFD  185 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~D  185 (292)
                      ++|+|.++++.....         ......+++..++.|+.|||.||.|||   +.+|+||||||+|||+++++.+||+|
T Consensus       152 ~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~vKi~D  228 (353)
T 4ase_A          152 KFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICD  228 (353)
T ss_dssp             TTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECC
T ss_pred             CCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCccCccceeeCCCCCEEECc
Confidence            999999999653211         112456899999999999999999999   89999999999999999999999999


Q ss_pred             cccccccCCCCc-cchhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCC
Q 044211          186 FSFSISIPEGET-HISELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       186 fg~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      ||+|+.+..+.. .......||+.|++||+...      +     ||+  ||++ ...||........+......+. .+
T Consensus       229 FGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~-~~  307 (353)
T 4ase_A          229 FGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT-RM  307 (353)
T ss_dssp             CGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTC-CC
T ss_pred             chhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCC-CC
Confidence            999997755433 33455678999998886532      2     999  9983 4555544332222222222222 22


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      +.+..+++.+.++|.+||+.||++|| +.||++.|+.+.++.
T Consensus       308 ~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~  349 (353)
T 4ase_A          308 RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  349 (353)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             CCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHh
Confidence            33357788999999999999999999 999999999987654

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2.2e-46  Score=321.26  Aligned_cols=228  Identities=15%  Similarity=0.138  Sum_probs=181.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       +++.||||.++....     ..+|+.++++++|||||++++++.+++.+|+|||||++|
T Consensus        68 ~G~fG~Vy~a~~~~-------~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg  135 (336)
T 4g3f_A           68 RGSFGEVHRMKDKQ-------TGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGG  135 (336)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTC
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCC
Confidence            89999999999876       899999999976532     247999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC-ceEEeecccccccCCCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFSISIPEGE  196 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~-~~kl~Dfg~a~~~~~~~  196 (292)
                      +|.+++++.       ..+++..+..|+.||+.||.|||   +.+|+||||||+|||++.+| .+||+|||+|+.+..+.
T Consensus       136 ~L~~~l~~~-------~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~  205 (336)
T 4g3f_A          136 SLGQLIKQM-------GCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG  205 (336)
T ss_dssp             BHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred             cHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCC
Confidence            999999533       46999999999999999999999   89999999999999999887 59999999999876443


Q ss_pred             cc----chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCC-CchHHH
Q 044211          197 TH----ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS-GNQQQL  257 (292)
Q Consensus       197 ~~----~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  257 (292)
                      ..    .....+||+.|++||+....           ||+  ||+ |+. ||... ....++.......++.. .++.++
T Consensus       206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~-Pf~~~-~~~~~~~~i~~~~~~~~~~~~~~s  283 (336)
T 4g3f_A          206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCH-PWTQY-FRGPLCLKIASEPPPIREIPPSCA  283 (336)
T ss_dssp             --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC-SSTTT-CCSCCHHHHHHSCCGGGGSCTTSC
T ss_pred             cccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcC-CCCCC-CHHHHHHHHHcCCCCchhcCccCC
Confidence            22    22346799999999876433           999  888 644 44332 22222222233322211 124678


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      +.+.++|.+||+.||++|| +.|+++.|....+
T Consensus       284 ~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~  316 (336)
T 4g3f_A          284 PLTAQAIQEGLRKEPVHRASAMELRRKVGKALQ  316 (336)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence            8999999999999999999 9999999877553

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=6.1e-46  Score=327.05  Aligned_cols=226  Identities=18%  Similarity=0.247  Sum_probs=184.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       +|+.||||.++.......+.+.+|+.+|++++|||||++++++...+.+|+|||||++|
T Consensus       161 ~G~fG~V~~a~~~~-------tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG  233 (423)
T 4fie_A          161 EGSTGIVCIATVRS-------SGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGG  233 (423)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTE
T ss_pred             cCcCcEEEEEEECC-------CCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCC
Confidence            99999999999976       89999999998765555677899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.++++        ...+++..+..|+.||+.||.|||   +.+|+||||||+|||++.+|.+||+|||+|+.+.... 
T Consensus       234 ~L~~~i~--------~~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~-  301 (423)
T 4fie_A          234 ALTDIVT--------HTRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-  301 (423)
T ss_dssp             EHHHHHH--------HSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-
T ss_pred             cHHHHHh--------ccCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCC-
Confidence            9999993        245899999999999999999999   8999999999999999999999999999998775433 


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCC-CCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRS-CSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l  263 (292)
                      ......+||+.|++||+....           ||+  ||+....||.... ..+.+........+ ...+...++.+.+|
T Consensus       302 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-~~~~~~~i~~~~~~~~~~~~~~s~~~~dl  380 (423)
T 4fie_A          302 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP-PLKAMKMIRDNLPPRLKNLHKVSPSLKGF  380 (423)
T ss_dssp             CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-HHHHHHHHHHSCCCCCSCTTSSCHHHHHH
T ss_pred             ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC-HHHHHHHHHcCCCCCCcccccCCHHHHHH
Confidence            223457899999999876543           999  8993334554432 22222222222211 11223567889999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~  283 (292)
                      |.+||+.||++|| +.|+++.
T Consensus       381 i~~~L~~dP~~R~ta~ell~H  401 (423)
T 4fie_A          381 LDRLLVRDPAQRATAAELLKH  401 (423)
T ss_dssp             HHHHSCSSTTTSCCHHHHTTC
T ss_pred             HHHHcCCChhHCcCHHHHhcC
Confidence            9999999999999 9998763

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.2e-45  Score=315.03  Aligned_cols=235  Identities=17%  Similarity=0.213  Sum_probs=173.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCC----cceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ----IPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~----~~~lv~e~  113 (292)
                      +|+||+||+|.+         +|+.||||+++.... ....+..|+..+.+++|||||+++|++..++    .+++||||
T Consensus        13 ~G~fG~Vy~~~~---------~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey   82 (303)
T 3hmm_A           13 KGRFGEVWRGKW---------RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDY   82 (303)
T ss_dssp             ECSSSEEEEEEE---------TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred             eCCCeEEEEEEE---------CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecC
Confidence            899999999998         889999999975421 1122345666677899999999999998654    47899999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCcccCCCCCCceEecCCCceEEeeccc
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF-----PRPVIFRDFKLSNILFNEENVAKLFDFSF  188 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~-----~~~i~H~dlk~~nili~~~~~~kl~Dfg~  188 (292)
                      +++|||.++++        ...+++..+++++.|++.||+|||..+     ..+|+||||||+|||++.++.+||+|||+
T Consensus        83 ~~~gsL~~~l~--------~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGl  154 (303)
T 3hmm_A           83 HEHGSLFDYLN--------RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  154 (303)
T ss_dssp             CTTCBHHHHHH--------HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             CCCCcHHHHHH--------hCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCC
Confidence            99999999994        345899999999999999999999321     23899999999999999999999999999


Q ss_pred             ccccCCCCcc---chhhhhcccccccccccC------------CC-----CeE--EEc-cchh---------hhhhcc--
Q 044211          189 SISIPEGETH---ISELLSGLRAFDLARLNE------------DD-----GYV--VLL-DHIK---------KYFEED--  234 (292)
Q Consensus       189 a~~~~~~~~~---~~~~~~g~~~y~~~~~~~------------~~-----Gvi--el~-~~~~---------~~~~~~--  234 (292)
                      |+........   ......||+.|++||+..            ++     ||+  ||+ |..+         |+....  
T Consensus       155 a~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~  234 (303)
T 3hmm_A          155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS  234 (303)
T ss_dssp             CEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCS
T ss_pred             CccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccc
Confidence            9877544322   233467999999998642            22     999  998 5431         111100  


Q ss_pred             --chhhhc----ccccccCCCC-CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          235 --RLNEII----DPLIMGDRSC-SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       235 --~~~~~~----~~~~~~~~~~-~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                        ......    ...+.+..+. ....+++..+.+|+.+||+.||++|| |.||++.|+++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          235 DPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             SCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence              011111    1111111111 01135778899999999999999999 99999999998765

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3.3e-45  Score=306.35  Aligned_cols=223  Identities=19%  Similarity=0.249  Sum_probs=170.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||+||+|.+..       +++.||+|.++..   .......+.+|+.++++++||||+++++++.+++.+|+||||+
T Consensus        23 ~G~fg~V~~~~~~~-------~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   95 (275)
T 3hyh_A           23 EGSFGKVKLAYHTT-------TGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA   95 (275)
T ss_dssp             C---CCEEEEECTT-------TCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cCcCeEEEEEEECC-------CCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCC
Confidence            99999999999876       8999999999753   2233467999999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                       +|+|.+++.       ....+++..+..++.|++.||.|||   +++|+||||||+|||+++++.+||+|||+|+....
T Consensus        96 -~g~L~~~l~-------~~~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~  164 (275)
T 3hyh_A           96 -GNELFDYIV-------QRDKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD  164 (275)
T ss_dssp             -CEEHHHHHH-------HSCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC-----
T ss_pred             -CCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCC
Confidence             579999994       3456999999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCccchhhhhcccccccccccCCC------------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD------------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ..  ......||+.|++||.....            ||+  +|+....||. .......+.....+..+.+.  ..++.+
T Consensus       165 ~~--~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~-~~~~~~~~~~i~~~~~~~p~--~~s~~~  239 (275)
T 3hyh_A          165 GN--FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFD-DESIPVLFKNISNGVYTLPK--FLSPGA  239 (275)
T ss_dssp             ------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHTCCCCCT--TSCHHH
T ss_pred             CC--ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHcCCCCCCC--CCCHHH
Confidence            32  23457899999999875432            998  8883333443 33444444444444444433  567889


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+|+.+||+.||++|| +.|+++.
T Consensus       240 ~~li~~~L~~dP~~R~s~~eil~h  263 (275)
T 3hyh_A          240 AGLIKRMLIVNPLNRISIHEIMQD  263 (275)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred             HHHHHHHccCChhHCcCHHHHHcC
Confidence            9999999999999999 9999873

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=4e-46  Score=316.12  Aligned_cols=224  Identities=16%  Similarity=0.158  Sum_probs=186.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||+||+|....       +++.||||.++..   .....+.+.+|+.+|++++|||||++++++.+++.+|+|||||
T Consensus        42 ~G~fg~V~~a~~~~-------~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~  114 (311)
T 4aw0_A           42 EGSFSTVVLARELA-------TSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYA  114 (311)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             cccCeEEEEEEECC-------CCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecC
Confidence            99999999999876       8999999999642   2334577999999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++++       ...+++..+..++.||+.||.|||   +++|+||||||+|||++.++.+||+|||+|+.+..
T Consensus       115 ~gG~L~~~i~~-------~~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~  184 (311)
T 4aw0_A          115 KNGELLKYIRK-------IGSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSP  184 (311)
T ss_dssp             TTEEHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             CCCCHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCC
Confidence            99999999953       346999999999999999999999   89999999999999999999999999999998754


Q ss_pred             CC-ccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GE-THISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~-~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      .. .......+||+.|++||+....           ||+  ||+....||. ..+...++.....+....+.  ..++.+
T Consensus       185 ~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~-~~~~~~~~~~i~~~~~~~p~--~~s~~~  261 (311)
T 4aw0_A          185 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFR-AGNEGLIFAKIIKLEYDFPE--KFFPKA  261 (311)
T ss_dssp             TTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHTCCCCCT--TCCHHH
T ss_pred             CCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHcCCCCCCc--ccCHHH
Confidence            33 2334567899999999876433           999  8883333443 33444555555555554443  667889


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVA  281 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~  281 (292)
                      .+||.+||+.||++|| +.|++
T Consensus       262 ~dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          262 RDLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             HHHHHHHSCSSGGGSTTSGGGT
T ss_pred             HHHHHHHccCCHhHCcChHHHc
Confidence            9999999999999999 98864

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1e-43  Score=302.01  Aligned_cols=227  Identities=16%  Similarity=0.204  Sum_probs=163.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCc----------
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQI----------  106 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~----------  106 (292)
                      +|+||+||+|.+..       +++.||||.++.... ...+.+.+|+.+|++++|||||+++++|...+.          
T Consensus        15 ~G~fg~V~~a~~~~-------~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~   87 (299)
T 4g31_A           15 RGGFGVVFEAKNKV-------DDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPK   87 (299)
T ss_dssp             ECC--EEEEEEETT-------TCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------C
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCC
Confidence            89999999999876       899999999975433 334678999999999999999999999975442          


Q ss_pred             --ceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          107 --PILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       107 --~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                        +|+|||||++|+|.++++...    .....++..++.|+.||+.||.|||   +.+|+||||||+|||++.++.+||+
T Consensus        88 ~~l~ivmE~~~gg~L~~~l~~~~----~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~  160 (299)
T 4g31_A           88 VYLYIQMQLCRKENLKDWMNGRC----TIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVG  160 (299)
T ss_dssp             EEEEEEEECCCSCCHHHHHHTCC----SGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred             cEEEEEEecCCCCcHHHHHHhcC----CCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEc
Confidence              689999999999999994221    1233556778899999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCCcc-----------chhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhc
Q 044211          185 DFSFSISIPEGETH-----------ISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEII  240 (292)
Q Consensus       185 Dfg~a~~~~~~~~~-----------~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~  240 (292)
                      |||+|+.+..+...           .....+||+.|++||.....           ||+  ||+.   |+.........+
T Consensus       161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~  237 (299)
T 4g31_A          161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTL  237 (299)
T ss_dssp             CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHH
T ss_pred             cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHHHH
Confidence            99999877543221           12345799999999865433           888  8873   222221111111


Q ss_pred             ccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          241 DPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ........+ +.....++.+.+|+.+||+.||++|| +.|+++
T Consensus       238 ~~~~~~~~p-~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          238 TDVRNLKFP-PLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HHHHTTCCC-HHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHhcCCCC-CCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            111222222 11234566788999999999999999 999986

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1e-44  Score=307.39  Aligned_cols=222  Identities=17%  Similarity=0.134  Sum_probs=170.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+|+...    +..+++.||+|.++...  .....++.+|+.+|++++|||||++++++.+++.+|+|||||+
T Consensus        34 ~G~fg~Vy~a~~~~----~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~  109 (304)
T 3ubd_A           34 QGSFGKVFLVKKIS----GSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLR  109 (304)
T ss_dssp             CGGGCEEEEEEECS----STTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEEEECCCT
T ss_pred             cCCCeEEEEEEEcc----CCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEEcCC
Confidence            99999999997631    11157899999997532  2223468899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++++       ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.+|.+||+|||+|+.....
T Consensus       110 gg~L~~~l~~-------~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  179 (304)
T 3ubd_A          110 GGDLFTRLSK-------EVMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH  179 (304)
T ss_dssp             TCEEHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC----
T ss_pred             CCCHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceeccCC
Confidence            9999999953       346999999999999999999999   899999999999999999999999999999866443


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      .. ......||+.|++||.....           ||+  ||+....||.. .+..+.+.....+..+.+.  ..++.+.+
T Consensus       180 ~~-~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~-~~~~~~~~~i~~~~~~~p~--~~s~~~~~  255 (304)
T 3ubd_A          180 EK-KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQG-KDRKETMTMILKAKLGMPQ--FLSPEAQS  255 (304)
T ss_dssp             -C-CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCC-SSHHHHHHHHHHCCCCCCT--TSCHHHHH
T ss_pred             Cc-cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCC-cCHHHHHHHHHcCCCCCCC--cCCHHHHH
Confidence            22 23456899999999866433           999  88833344433 3344444444444444433  67889999


Q ss_pred             HHhHhcCCCCCCCC-H
Q 044211          263 LIFECVNESPVDRP-M  277 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~  277 (292)
                      ||.+||+.||++|| +
T Consensus       256 li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          256 LLRMLFKRNPANRLGA  271 (304)
T ss_dssp             HHHHHTCSSGGGSTTC
T ss_pred             HHHHHcccCHHHCCCC
Confidence            99999999999999 6

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=292.75  Aligned_cols=226  Identities=15%  Similarity=0.153  Sum_probs=172.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecC------CcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLET------QIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~------~~~~l  109 (292)
                      +|+||+||+|.+..       +|+.||||+++...  ....+.+.+|+.+|++++|||||++++++...      +.+|+
T Consensus        64 ~G~fG~V~~a~~~~-------t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~i  136 (398)
T 4b99_A           64 NGAYGVVSSARRRL-------TGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYV  136 (398)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEE
T ss_pred             cccCeEEEEEEECC-------CCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEE
Confidence            89999999999876       89999999997542  23456789999999999999999999997643      56899


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      |||||. |+|.+++       .....+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|
T Consensus       137 vmE~~~-g~L~~~i-------~~~~~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla  205 (398)
T 4b99_A          137 VLDLME-SDLHQII-------HSSQPLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMA  205 (398)
T ss_dssp             EEECCS-EEHHHHH-------TSSSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             EEeCCC-CCHHHHH-------HhcCCCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeeccee
Confidence            999997 6899999       34567999999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCC---ccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhccccc-------
Q 044211          190 ISIPEGE---THISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDPLI-------  244 (292)
Q Consensus       190 ~~~~~~~---~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~-------  244 (292)
                      +.+....   .......+||+.|++||+....            ||+  ||+ |+. ||....... .+....       
T Consensus       206 ~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~-pF~g~~~~~-~l~~I~~~~g~p~  283 (398)
T 4b99_A          206 RGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQ-LFPGKNYVH-QLQLIMMVLGTPS  283 (398)
T ss_dssp             BCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSC-SSCCSSHHH-HHHHHHHHHCCCC
T ss_pred             eecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCC-CCCCCCHHH-HHHHHHHhcCCCC
Confidence            8764322   1223457899999999864321            999  888 654 443221111 111000       


Q ss_pred             -------------------ccCCCCCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          245 -------------------MGDRSCSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       245 -------------------~~~~~~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                         ....+.+.   .+..++.+.+||.+||+.||++|| +.|+++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  345 (398)
T 4b99_A          284 PAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH  345 (398)
T ss_dssp             GGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             hHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                               00000000   012356789999999999999999 9998763

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=1.1e-39  Score=300.24  Aligned_cols=225  Identities=14%  Similarity=0.193  Sum_probs=184.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|....       +|+.||+|.+........+.+.+|+.+|+.++||||+++++++..++.+++|||||++|
T Consensus       167 ~G~fg~V~~~~~~~-------tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg  239 (573)
T 3uto_A          167 TGAFGVVHRVTERA-------TGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGG  239 (573)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECCCCC
T ss_pred             eccCeEEEEEEECC-------CCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeecCCC
Confidence            89999999999876       89999999998765555677899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC--CceEEeecccccccCCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE--NVAKLFDFSFSISIPEG  195 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~--~~~kl~Dfg~a~~~~~~  195 (292)
                      +|.+++.      .....+++..+..++.||+.||.|||   +.+|+||||||+|||++.+  +.+||+|||+|+.+...
T Consensus       240 ~L~~~i~------~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~  310 (573)
T 3uto_A          240 ELFEKVA------DEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK  310 (573)
T ss_dssp             BHHHHHT------CTTSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT
T ss_pred             cHHHHHH------HhCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCC
Confidence            9999992      23467999999999999999999999   8999999999999999854  89999999999988654


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC--chHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG--NQQQLQA  259 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  259 (292)
                      ..  ....+||+.|++||+....           ||+  ||+ |.. ||... ...+.+..........+.  ....++.
T Consensus       311 ~~--~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~-Pf~~~-~~~~~~~~i~~~~~~~~~~~~~~~s~~  386 (573)
T 3uto_A          311 QS--VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLS-PFGGE-NDDETLRNVKSCDWNMDDSAFSGISED  386 (573)
T ss_dssp             SE--EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCC-SSCCS-SHHHHHHHHHTTCCCCCSGGGTTSCHH
T ss_pred             Cc--eeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCC-CCCCc-CHHHHHHHHHhCCCCCCcccccCCCHH
Confidence            33  3446799999999876543           888  888 654 44332 223333333333322221  2356778


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+||.+||+.||++|| +.|+++
T Consensus       387 ~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          387 GKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHccCChhHCcCHHHHhc
Confidence            99999999999999999 999986

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.6e-39  Score=278.50  Aligned_cols=232  Identities=16%  Similarity=0.182  Sum_probs=182.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       +++.||+|.+........+.+.+|+.++++++||||+++++++...+..++||||+++|
T Consensus        20 ~G~~g~V~~~~~~~-------~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~   92 (310)
T 3s95_A           20 KGCFGQAIKVTHRE-------TGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGG   92 (310)
T ss_dssp             CCSSEEEEEEEETT-------TCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTC
T ss_pred             CCCCEEEEEEEECC-------CCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCC
Confidence            89999999999875       89999999997766667788999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.++++.      ....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++........
T Consensus        93 ~L~~~l~~------~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  163 (310)
T 3s95_A           93 TLRGIIKS------MDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT  163 (310)
T ss_dssp             BHHHHHHH------CCTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC----
T ss_pred             cHHHHHHh------ccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceecccccc
Confidence            99999953      2456999999999999999999999   89999999999999999999999999999987654332


Q ss_pred             cch-------------hhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcc----ccccc
Q 044211          198 HIS-------------ELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIID----PLIMG  246 (292)
Q Consensus       198 ~~~-------------~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~----~~~~~  246 (292)
                      ...             ....||+.|++||.....           |++  +|+ |.. ++...........    .....
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~-~~~~~~~~~~~~~~~~~~~~~~  242 (310)
T 3s95_A          164 QPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVN-ADPDYLPRTMDFGLNVRGFLDR  242 (310)
T ss_dssp             ----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCC-SSTTTSCBCTTSSBCHHHHHHH
T ss_pred             cccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCC-CCcchhhhHHHHhhhhhccccc
Confidence            211             145689999888765432           888  888 443 2221111110000    01111


Q ss_pred             CCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          247 DRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       247 ~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ..+    ..+++.+.+++.+||+.||++|| +.++++.|+.++..
T Consensus       243 ~~~----~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~  283 (310)
T 3s95_A          243 YCP----PNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH  283 (310)
T ss_dssp             TCC----TTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cCC----CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            111    24455899999999999999999 99999999998753

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=3e-39  Score=297.06  Aligned_cols=217  Identities=14%  Similarity=0.140  Sum_probs=172.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHH---HHHHHHhcCCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCIN---NIVYASQMIHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~---e~~~l~~l~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||+|....       +|+.||||+++..   .......+.+   ++.+++.++|||||++++++.+.+.+|+||
T Consensus       199 ~G~fG~V~la~~~~-------tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~lylVm  271 (689)
T 3v5w_A          199 RGGFGEVYGCRKAD-------TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFIL  271 (689)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccCeEEEEEEECC-------CCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEEEEE
Confidence            99999999999976       8999999998642   1112223333   456677789999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||++||+|.+++.+       ...+++..+..|+.||+.||.|||   +.+|+||||||+|||++.+|.+||+|||+|+.
T Consensus       272 Ey~~GGdL~~~l~~-------~~~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~  341 (689)
T 3v5w_A          272 DLMNGGDLHYHLSQ-------HGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACD  341 (689)
T ss_dssp             CCCCSCBHHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             ecCCCCcHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeee
Confidence            99999999999953       346999999999999999999999   99999999999999999999999999999987


Q ss_pred             cCCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhcc--chhhhcccccccCCCCCCch
Q 044211          192 IPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEED--RLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  254 (292)
                      +....   ....+||+.|++||+..+.            ||+  ||+ |.. ||....  ....+...........+  .
T Consensus       342 ~~~~~---~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~-PF~~~~~~~~~~i~~~i~~~~~~~p--~  415 (689)
T 3v5w_A          342 FSKKK---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHS-PFRQHKTKDKHEIDRMTLTMAVELP--D  415 (689)
T ss_dssp             CSSCC---CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSC-TTCGGGCCCHHHHHHHHHHCCCCCC--T
T ss_pred             cCCCC---CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCChHHHHHHHHhhcCCCCCCC--c
Confidence            75443   2456899999999976421            999  999 644 553322  12223333333333333  3


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-H
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~  277 (292)
                      ..++.+.+||.+||+.||++|+ .
T Consensus       416 ~~S~~a~dLI~~lL~~dP~~Rl~~  439 (689)
T 3v5w_A          416 SFSPELRSLLEGLLQRDVNRRLGC  439 (689)
T ss_dssp             TSCHHHHHHHHHHTCSCGGGCTTC
T ss_pred             cCCHHHHHHHHHHccCCHhHCCCC
Confidence            6778899999999999999998 5

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.3e-38  Score=267.41  Aligned_cols=234  Identities=21%  Similarity=0.288  Sum_probs=187.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        +++.||+|.+.... ...+.+.+|+.++++++||||+++++++...+..++||||++++
T Consensus        20 ~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   90 (269)
T 4hcu_A           20 SGQFGLVHLGYWL--------NKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHG   90 (269)
T ss_dssp             ECSSCEEEEEEET--------TTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTC
T ss_pred             CCCccEEEEEEec--------CCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCC
Confidence            8999999999997        88899999998653 23467999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.      .....+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++........
T Consensus        91 ~L~~~l~------~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  161 (269)
T 4hcu_A           91 CLSDYLR------TQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY  161 (269)
T ss_dssp             BHHHHHH------TTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred             cHHHHHH------hcCcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEecccccccccccccc
Confidence            9999994      23456899999999999999999999   89999999999999999999999999999987755433


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|++|+.....           |++  +|+. ...|+... ...........+.. ...+...++.+.++
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~l  239 (269)
T 4hcu_A          162 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-SNSEVVEDISTGFR-LYKPRLASTHVYQI  239 (269)
T ss_dssp             HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-CHHHHHHHHHTTCC-CCCCTTSCHHHHHH
T ss_pred             ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHHhcCcc-CCCCCcCCHHHHHH
Confidence            333445567788888764322           888  7873 55554432 22222222222211 12223557789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      +.+||+.||++|| +.++++.|+++.+++
T Consensus       240 i~~~l~~~p~~Rps~~~ll~~l~~l~~~g  268 (269)
T 4hcu_A          240 MNHCWRERPEDRPAFSRLLRQLAEIAESG  268 (269)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHccCCcccCcCHHHHHHHHHHHHHcc
Confidence            9999999999999 999999999998764

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=3.6e-38  Score=271.80  Aligned_cols=253  Identities=23%  Similarity=0.386  Sum_probs=196.8

Q ss_pred             CCccccccHHHHHHHhhC--------ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcC
Q 044211           20 YNPIRSFCAEELKTTHNA--------IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMI   90 (292)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~--------~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~   90 (292)
                      ......|+..++....+.        +|+||.||+|.+.        +++.||+|.+..... .....+.+|+.+++.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~   85 (326)
T 3uim_A           14 LGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA--------DGTLVAVKRLKEERTQGGELQFQTEVEMISMAV   85 (326)
T ss_dssp             -CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCS--------SSCCEEEEECCC-----CCCHHHHHHHGGGTCC
T ss_pred             cCccceecHHHHHHHhhccccceeEecCCCcEEEEEEec--------CCCEEEEEEeccccCchHHHHHHHHHHHHHhcc
Confidence            445667899999888876        9999999999986        899999999876432 22336889999999999


Q ss_pred             CCCccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC---CcccCC
Q 044211           91 HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR---PVIFRD  167 (292)
Q Consensus        91 h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~---~i~H~d  167 (292)
                      ||||+++++++...+..++||||+.+|+|.+++....   .....+++..+..++.|++.||.|||   ..   +++|+|
T Consensus        86 h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~ivH~D  159 (326)
T 3uim_A           86 HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERP---ESQPPLDWPKRQRIALGSARGLAYLH---DHCDPKIIHRD  159 (326)
T ss_dssp             CTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCS---TTCCCCCHHHHHHHHHHHHHHHHHHH---HSSSSCEECCC
T ss_pred             CCCccceEEEEecCCceEEEEEeccCCCHHHHHHhcc---ccCCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCeEeCC
Confidence            9999999999999999999999999999999995332   24556999999999999999999999   66   999999


Q ss_pred             CCCCceEecCCCceEEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhc
Q 044211          168 FKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEE  233 (292)
Q Consensus       168 lk~~nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~  233 (292)
                      |||+|||++.++.+||+|||++...............||+.|++|+.....           |++  +|+ |.. |+...
T Consensus       160 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~  238 (326)
T 3uim_A          160 VKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQR-AFDLA  238 (326)
T ss_dssp             CSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCC-SBCHH
T ss_pred             CchhhEEECCCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCC-ccccc
Confidence            999999999999999999999987765555445556689999888765322           888  888 654 22110


Q ss_pred             c-------ch---------hhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          234 D-------RL---------NEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       234 ~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      .       ..         ................+...+..+.+++.+||+.||.+|| +.++++.|+..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          239 RLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             HHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred             ccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence            0       00         0001111111112222357889999999999999999999 99999999863

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.2e-38  Score=277.59  Aligned_cols=171  Identities=15%  Similarity=0.179  Sum_probs=140.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||+||+|+.+.    ...+++.||+|.+....  ...++.+|+.+|+.+ .||||+++++++...+.+++||||+++
T Consensus        31 ~G~fg~Vy~a~~~~----~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~g  104 (361)
T 4f9c_A           31 EGTFSSVYLATAQL----QVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEH  104 (361)
T ss_dssp             ECSSEEEEEEEEEB----TTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEECCCC
T ss_pred             cccCcEEEEEEEcc----cCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeCCCc
Confidence            99999999997631    01157899999986553  345688999999998 699999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC-CceEEeecccccccCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE-NVAKLFDFSFSISIPEG  195 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~-~~~kl~Dfg~a~~~~~~  195 (292)
                      |+|.+++          ..+++..+..++.|++.||.|||   +.+|+||||||+|||++.+ +.+||+|||+|+.....
T Consensus       105 ~~L~~~~----------~~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~  171 (361)
T 4f9c_A          105 ESFLDIL----------NSLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDT  171 (361)
T ss_dssp             CCHHHHH----------TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTC
T ss_pred             ccHHHHH----------cCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCc
Confidence            9999999          24899999999999999999999   8999999999999999976 79999999999865432


Q ss_pred             Ccc---------------------------chhhhhcccccccccccCCC------------CeE--EEc-cch
Q 044211          196 ETH---------------------------ISELLSGLRAFDLARLNEDD------------GYV--VLL-DHI  227 (292)
Q Consensus       196 ~~~---------------------------~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~  227 (292)
                      ...                           .....+||+.|++||+....            ||+  ||+ |+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~  245 (361)
T 4f9c_A          172 KIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRY  245 (361)
T ss_dssp             SCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCS
T ss_pred             cccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCC
Confidence            211                           11335799999999865322            999  888 654

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=2.8e-38  Score=272.03  Aligned_cols=238  Identities=24%  Similarity=0.317  Sum_probs=187.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        +++.||+|.+........+.+.+|+.+++.++||||+++++++...+..++||||+++|
T Consensus        49 ~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  120 (321)
T 2qkw_B           49 HGVFGKVYKGVLR--------DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENG  120 (321)
T ss_dssp             BCSSSEEEEEECT--------TCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEECCTTC
T ss_pred             cCCCeeEEEEEEC--------CCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEEcCCCC
Confidence            8999999999986        89999999988776667788999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC-
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE-  196 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~-  196 (292)
                      +|.+++....   .....+++..++.++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++....... 
T Consensus       121 ~L~~~l~~~~---~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  194 (321)
T 2qkw_B          121 NLKRHLYGSD---LPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQ  194 (321)
T ss_dssp             BTGGGSSSSC---CCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSC
T ss_pred             cHHHHHhccC---CCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeecccccccccccc
Confidence            9999993221   23356899999999999999999999   8999999999999999999999999999998654322 


Q ss_pred             ccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccch--------------hhhcccccccCC
Q 044211          197 THISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRL--------------NEIIDPLIMGDR  248 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~--------------~~~~~~~~~~~~  248 (292)
                      ........|++.|++||...      ++     |++  ||+ |+. |+......              ...+...+....
T Consensus       195 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (321)
T 2qkw_B          195 THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARS-AIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNL  273 (321)
T ss_dssp             CCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCT-TCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSC
T ss_pred             cccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCC-cccccCcHHHHHHHHHhhhccccccHHHhcChhh
Confidence            22233456889998887542      22     888  888 654 32221110              000111111222


Q ss_pred             CCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          249 SCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       249 ~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .......++..+.+++.+||+.||++|| +.++++.|+.+.+.
T Consensus       274 ~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~  316 (321)
T 2qkw_B          274 ADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL  316 (321)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             ccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence            2222368899999999999999999999 99999999987653

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.2e-37  Score=268.25  Aligned_cols=239  Identities=18%  Similarity=0.242  Sum_probs=189.5

Q ss_pred             ccccHHHHHHHhhC------------------ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHH
Q 044211           24 RSFCAEELKTTHNA------------------IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVY   85 (292)
Q Consensus        24 ~~~~~~~~~~~~~~------------------~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~   85 (292)
                      ..|+.++++.++..                  +|+||.||+|....       +++.||||.+........+.+.+|+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~-------~g~~vavK~~~~~~~~~~~~~~~E~~~   95 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKH-------SGRQVAVKMMDLRKQQRRELLFNEVVI   95 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETT-------TCCEEEEEEEETTTCCSHHHHHHHHHH
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECC-------CCcEEEEEEEeccchhHHHHHHHHHHH
Confidence            45788888777652                  89999999999865       899999999987666667789999999


Q ss_pred             HHhcCCCCccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q 044211           86 ASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIF  165 (292)
Q Consensus        86 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H  165 (292)
                      +++++||||+++++++...+..++||||+++|+|.+++        ....+++..+..++.|++.||.|||   ..+++|
T Consensus        96 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l--------~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH  164 (321)
T 2c30_A           96 MRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIV--------SQVRLNEEQIATVCEAVLQALAYLH---AQGVIH  164 (321)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHH--------TTCCCCHHHHHHHHHHHHHHHHHHH---HTTEEC
T ss_pred             HHhCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHH--------HhcCCCHHHHHHHHHHHHHHHHHHH---HCCeec
Confidence            99999999999999999999999999999999999999        2346899999999999999999999   899999


Q ss_pred             CCCCCCceEecCCCceEEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhh
Q 044211          166 RDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYF  231 (292)
Q Consensus       166 ~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~  231 (292)
                      +||||+||+++.++.+||+|||++........ ......||+.|++||.....           |++  +|+ |+. |+.
T Consensus       165 ~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~-pf~  242 (321)
T 2c30_A          165 RDIKSDSILLTLDGRVKLSDFGFCAQISKDVP-KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEP-PYF  242 (321)
T ss_dssp             CCCSGGGEEECTTCCEEECCCTTCEECCSSSC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC-TTT
T ss_pred             CCCCHHHEEECCCCcEEEeeeeeeeecccCcc-ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCC-CCC
Confidence            99999999999999999999999987654322 22345789999888765432           888  888 544 443


Q ss_pred             hccchhhhcccccccCCC-CCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          232 EEDRLNEIIDPLIMGDRS-CSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .... ...+........+ .......++.+.+++.+||+.||++|| +.++++.
T Consensus       243 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  295 (321)
T 2c30_A          243 SDSP-VQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDH  295 (321)
T ss_dssp             TSCH-HHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCCH-HHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            3222 1122211111111 112235677899999999999999999 9999864

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=2.4e-38  Score=269.62  Aligned_cols=227  Identities=18%  Similarity=0.263  Sum_probs=181.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|....       +++.||+|.+........+.+.+|+.++++++||||+++++++...+..++||||+++|
T Consensus        30 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~  102 (297)
T 3fxz_A           30 QGASGTVYTAMDVA-------TGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGG  102 (297)
T ss_dssp             EETTEEEEEEEBTT-------TCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTC
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECCCCC
Confidence            89999999999765       89999999997655555677899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.        ...+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++........
T Consensus       103 ~L~~~~~--------~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  171 (297)
T 3fxz_A          103 SLTDVVT--------ETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  171 (297)
T ss_dssp             BHHHHHH--------HSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             CHHHHHh--------hcCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc
Confidence            9999993        235899999999999999999999   89999999999999999999999999999987754332


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLI  264 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  264 (292)
                       ......||+.|++||.....           |++  +|+....|+.................+....+...+..+.+++
T Consensus       172 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  250 (297)
T 3fxz_A          172 -KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFL  250 (297)
T ss_dssp             -CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHH
T ss_pred             -ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHH
Confidence             23446789999888764322           888  8883333443333222222111122222223346677899999


Q ss_pred             hHhcCCCCCCCC-HHHHHHH
Q 044211          265 FECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       265 ~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+||+.||++|| +.|+++.
T Consensus       251 ~~~l~~dp~~Rps~~ell~h  270 (297)
T 3fxz_A          251 NRCLEMDVEKRGSAKELLQH  270 (297)
T ss_dssp             HHHSCSSTTTSCCHHHHTTC
T ss_pred             HHHccCChhHCcCHHHHhhC
Confidence            999999999999 9999863

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.2e-37  Score=273.17  Aligned_cols=247  Identities=16%  Similarity=0.215  Sum_probs=188.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+....+....++..||+|.++.... .....+.+|+.+++++ +||||+++++++...+.+++||||++
T Consensus        91 ~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~  170 (370)
T 2psq_A           91 EGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYAS  170 (370)
T ss_dssp             CCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             eCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEEEEEcCC
Confidence            899999999986322222223567899999976533 3456799999999999 89999999999999999999999999


Q ss_pred             CCChhHHhhhhCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          116 CGSLADRIRIHHTP---------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       116 ~gsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      +|+|.+++......         ......+++..++.++.|++.||.|||   ..+|+||||||+|||++.++.+||+||
T Consensus       171 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DF  247 (370)
T 2psq_A          171 KGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADF  247 (370)
T ss_dssp             TCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCC
T ss_pred             CCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEECCCCCEEEccc
Confidence            99999999654321         112346899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCcc-chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          187 SFSISIPEGETH-ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       187 g~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      |++......... ......+++.|++||+....           |++  ||+ +...|+... ...+.+.....+.. ..
T Consensus       248 G~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~-~~~~~~~~~~~~~~-~~  325 (370)
T 2psq_A          248 GLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEELFKLLKEGHR-MD  325 (370)
T ss_dssp             SSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-CGGGHHHHHHTTCC-CC
T ss_pred             cCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHhcCCC-CC
Confidence            999876543322 23345567889888854322           888  887 355454332 23333322222222 12


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+..++..+.+++.+||+.||++|| +.|+++.|+.+..
T Consensus       326 ~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~  364 (370)
T 2psq_A          326 KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT  364 (370)
T ss_dssp             CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            2246778999999999999999999 9999999999764

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=8.4e-38  Score=267.76  Aligned_cols=234  Identities=18%  Similarity=0.236  Sum_probs=173.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+         +++.||+|.+....  ......+.+|+.++++++||||+++++++...+..++||||++
T Consensus        47 ~G~~g~V~~~~~---------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  117 (309)
T 3p86_A           47 AGSFGTVHRAEW---------HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLS  117 (309)
T ss_dssp             ECSSEEEEEEEE---------TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCT
T ss_pred             cCCCeEEEEEEE---------CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCC
Confidence            999999999988         88999999987643  2344678999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--cccCCCCCCceEecCCCceEEeecccccccC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP--VIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~--i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +|+|.+++....    ....+++..++.++.|++.||.|||   +.+  ++||||||+||+++.++.+||+|||++....
T Consensus       118 ~~~L~~~l~~~~----~~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  190 (309)
T 3p86_A          118 RGSLYRLLHKSG----AREQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKA  190 (309)
T ss_dssp             TCBHHHHHHSTT----HHHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC------
T ss_pred             CCcHHHHHhhcC----CCCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCCcccc
Confidence            999999994211    1234899999999999999999999   888  9999999999999999999999999997654


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ... .......||+.|++||.....           |++  +|+ |+. |+... ..................+..+++.
T Consensus       191 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~-Pf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  267 (309)
T 3p86_A          191 STF-LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQ-PWGNL-NPAQVVAAVGFKCKRLEIPRNLNPQ  267 (309)
T ss_dssp             ------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCC-TTTTS-CHHHHHHHHHHSCCCCCCCTTSCHH
T ss_pred             ccc-cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCC-CCCCC-CHHHHHHHHHhcCCCCCCCccCCHH
Confidence            322 223456789999888765322           888  888 543 44332 2222222111111111222366778


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +.+|+.+||+.||.+|| +.++++.|+.+..+
T Consensus       268 l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~  299 (309)
T 3p86_A          268 VAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS  299 (309)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            99999999999999999 99999999998754

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=6.5e-38  Score=274.69  Aligned_cols=246  Identities=19%  Similarity=0.202  Sum_probs=188.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..  .....+++.||||.++.. .......+.+|+.++++++||||+++++++......++||||+++
T Consensus        81 ~G~fg~Vy~~~~~~--~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~  158 (367)
T 3l9p_A           81 HGAFGEVYEGQVSG--MPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAG  158 (367)
T ss_dssp             CCSSSCEEEEEECC-------CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             eCCCEEEEEEEEcc--CCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEEeCCC
Confidence            99999999999531  001126678999999754 334445789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC---ceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN---VAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~---~~kl~Dfg~a~~~~  193 (292)
                      |+|.++++...........+++..++.++.|++.||.|||   ..+|+||||||+|||++.++   .+||+|||+++...
T Consensus       159 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~  235 (367)
T 3l9p_A          159 GDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIY  235 (367)
T ss_dssp             EEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHH
T ss_pred             CCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEECCCccccccc
Confidence            9999999776554455677999999999999999999999   89999999999999999554   59999999998653


Q ss_pred             CCC-ccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          194 EGE-THISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       194 ~~~-~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ... ........||+.|++||...      ++     |++  ||+ +...|+... ...........+.... .+..++.
T Consensus       236 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~-~~~~~~~~i~~~~~~~-~~~~~~~  313 (367)
T 3l9p_A          236 RAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK-SNQEVLEFVTSGGRMD-PPKNCPG  313 (367)
T ss_dssp             HHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-CHHHHHHHHHTTCCCC-CCTTCCH
T ss_pred             cccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHcCCCCC-CCccCCH
Confidence            222 22234456788998887542      22     888  888 355454433 2233333322222221 2246677


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+.+|+.+||+.||++|| +.+|++.|+.+.+.
T Consensus       314 ~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~  346 (367)
T 3l9p_A          314 PVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  346 (367)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence            899999999999999999 99999999988753

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=8.9e-38  Score=269.45  Aligned_cols=238  Identities=17%  Similarity=0.246  Sum_probs=182.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..    .-..+..||||.++.. .....+.+.+|+.++++++||||+++++++...+..++||||+++
T Consensus        59 ~G~~g~V~~~~~~~----~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~  134 (325)
T 3kul_A           59 SGDSGEVCYGRLRV----PGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMEN  134 (325)
T ss_dssp             ETTTEEEEEEEECC----TTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECCTT
T ss_pred             eCCCcEEEEEEEec----CCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCCCC
Confidence            89999999999853    0003456999999865 334456799999999999999999999999998899999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.++++      .....+++..++.++.|++.||.|||   ..+|+|+||||+|||++.++.+||+|||++.......
T Consensus       135 ~~L~~~l~------~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  205 (325)
T 3kul_A          135 GSLDTFLR------THDGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDP  205 (325)
T ss_dssp             CBHHHHHH------TTTTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC---
T ss_pred             CcHHHHHH------hcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccccccCc
Confidence            99999994      23457999999999999999999999   8999999999999999999999999999998775432


Q ss_pred             cc--chhhhhcccccccccccCCC-----------CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 TH--ISELLSGLRAFDLARLNEDD-----------GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~--~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ..  ......+|..|++|+.....           |++  +|+. ...|+.... ..........+ ...+.+..+++.+
T Consensus       206 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l  283 (325)
T 3kul_A          206 DAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMT-NRDVISSVEEG-YRLPAPMGCPHAL  283 (325)
T ss_dssp             -CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSC-HHHHHHHHHTT-CCCCCCTTCCHHH
T ss_pred             cceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCC-HHHHHHHHHcC-CCCCCCCCcCHHH
Confidence            22  12233456778887765422           888  7773 555554432 22222222222 1222224677899


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+|+.+||+.||++|| +.++++.|+.+.+.
T Consensus       284 ~~li~~~l~~dp~~Rps~~eil~~L~~l~~~  314 (325)
T 3kul_A          284 HQLMLDCWHKDRAQRPRFSQIVSVLDALIRS  314 (325)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence            9999999999999999 99999999998764

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=1.4e-38  Score=279.81  Aligned_cols=235  Identities=21%  Similarity=0.240  Sum_probs=183.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||+|.++... ......+.+|+.++++++||||+++++++...+..++||||+++
T Consensus       124 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~  196 (377)
T 3cbl_A          124 RGNFGEVFSGRLRA-------DNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQG  196 (377)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             cCCCCeEEEEEEec-------CCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcCCC
Confidence            89999999999975       78999999987543 23345688999999999999999999999998999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.++++..      ...+++..++.++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++.......
T Consensus       197 g~L~~~l~~~------~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~  267 (377)
T 3cbl_A          197 GDFLTFLRTE------GARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGV  267 (377)
T ss_dssp             CBHHHHHHHH------GGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSE
T ss_pred             CCHHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCc
Confidence            9999999532      345889999999999999999999   8999999999999999999999999999998654432


Q ss_pred             ccch-hhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          197 THIS-ELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       197 ~~~~-~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      .... ....++..|++||...      ++     |++  ||+ ....|+.... ..........+. ..+.+..+++.+.
T Consensus       268 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~  345 (377)
T 3cbl_A          268 YAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS-NQQTREFVEKGG-RLPCPELCPDAVF  345 (377)
T ss_dssp             EECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC-HHHHHHHHHTTC-CCCCCTTCCHHHH
T ss_pred             eeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHHcCC-CCCCCCCCCHHHH
Confidence            2211 2233566788887543      22     888  888 3554443322 122222111121 2222246778999


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          262 HLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +|+.+||+.||++|| +.++++.|+++...
T Consensus       346 ~li~~cl~~dP~~Rps~~~i~~~L~~i~~~  375 (377)
T 3cbl_A          346 RLMEQCWAYEPGQRPSFSTIYQELQSIRKR  375 (377)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence            999999999999999 99999999998754

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=1.2e-38  Score=286.75  Aligned_cols=233  Identities=18%  Similarity=0.231  Sum_probs=177.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        .+..||||.++... ...+.+.+|+.++++++||||+++++++.. +..++||||+++|
T Consensus       194 ~G~fg~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~~g  263 (452)
T 1fmk_A          194 QGCFGEVWMGTWN--------GTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKG  263 (452)
T ss_dssp             ECSSCEEEEEEET--------TTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTC
T ss_pred             CCCCeEEEEEEEC--------CCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhhcCC
Confidence            8999999999996        67789999998653 345679999999999999999999999876 6789999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.++++..     ....+++..++.++.|++.||.|||   ..+++||||||+|||++.++.+||+|||++........
T Consensus       264 sL~~~l~~~-----~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  335 (452)
T 1fmk_A          264 SLLDFLKGE-----TGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY  335 (452)
T ss_dssp             BHHHHHSHH-----HHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC-------
T ss_pred             CHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCce
Confidence            999999422     2345899999999999999999999   89999999999999999999999999999987765443


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|++||...      ++     |++  ||+. ...|+.... ..+.......+. ..+.+..++..+.+|
T Consensus       336 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~-~~~~~~~i~~~~-~~~~~~~~~~~l~~l  413 (452)
T 1fmk_A          336 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV-NREVLDQVERGY-RMPCPPECPESLHDL  413 (452)
T ss_dssp             -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC-HHHHHHHHHTTC-CCCCCTTSCHHHHHH
T ss_pred             ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCC-HHHHHHHHHcCC-CCCCCCCCCHHHHHH
Confidence            3334455677898887543      22     888  8883 555544322 222222222222 222224778899999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      |.+||+.||++|| +.+|++.|+.+..+
T Consensus       414 i~~cl~~dP~~Rpt~~~l~~~L~~~~~~  441 (452)
T 1fmk_A          414 MCQCWRKEPEERPTFEYLQAFLEDYFTS  441 (452)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred             HHHHccCChhhCcCHHHHHHHHHHHhcc
Confidence            9999999999999 99999999987654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=7.2e-38  Score=270.23  Aligned_cols=223  Identities=19%  Similarity=0.285  Sum_probs=182.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +++.||+|.+...  .....+.+.+|+.+++.++||||+++++++...+..++||||++
T Consensus        25 ~G~~g~V~~a~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~   97 (328)
T 3fe3_A           25 KGNFAKVKLARHIL-------TGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYAS   97 (328)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEECCC
Confidence            89999999999865       8999999998653  33455678999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++..       ...+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++......
T Consensus        98 ~~~L~~~l~~-------~~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  167 (328)
T 3fe3_A           98 GGEVFDYLVA-------HGRMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG  167 (328)
T ss_dssp             TCBHHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS
T ss_pred             CCcHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCC
Confidence            9999999943       345899999999999999999999   899999999999999999999999999999877543


Q ss_pred             CccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      .  ......||+.|++||.....            |++  +|+ |+. |+ ..............+....+.  ..++.+
T Consensus       168 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~-pf-~~~~~~~~~~~i~~~~~~~p~--~~s~~~  241 (328)
T 3fe3_A          168 G--KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSL-PF-DGQNLKELRERVLRGKYRIPF--YMSTDC  241 (328)
T ss_dssp             C--GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSC-SS-CCSSHHHHHHHHHHCCCCCCT--TSCHHH
T ss_pred             C--ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCC-CC-CCCCHHHHHHHHHhCCCCCCC--CCCHHH
Confidence            3  23456799999888764321            888  888 543 33 233334444444444443332  567789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+|+.+||+.||.+|| +.|+++.
T Consensus       242 ~~li~~~L~~dP~~R~t~~eil~h  265 (328)
T 3fe3_A          242 ENLLKRFLVLNPIKRGTLEQIMKD  265 (328)
T ss_dssp             HHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred             HHHHHHHCCCChhHCcCHHHHhcC
Confidence            9999999999999999 9999764

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=8.9e-38  Score=283.88  Aligned_cols=234  Identities=17%  Similarity=0.253  Sum_probs=187.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       ++..||||.++... ...+.+.+|+.++++++||||+++++++......++||||+++|
T Consensus       230 ~G~fg~Vy~~~~~~-------~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g  301 (495)
T 1opk_A          230 GGQYGEVYEGVWKK-------YSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYG  301 (495)
T ss_dssp             GGTTSSEEEEEEGG-------GTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred             CCCCeEEEEEEEcC-------CCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCCC
Confidence            89999999999974       68999999997653 34678999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.++++..     ....+++..++.++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||+++....+..
T Consensus       302 ~L~~~l~~~-----~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  373 (495)
T 1opk_A          302 NLLDYLREC-----NRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTY  373 (495)
T ss_dssp             BHHHHHHHS-----CTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCE
T ss_pred             CHHHHHHhc-----CcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCCce
Confidence            999999532     2456899999999999999999999   89999999999999999999999999999987765444


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|++||...      ++     |++  ||+ +...|+... ........ +........+..+++.+.+|
T Consensus       374 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~l  451 (495)
T 1opk_A          374 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI-DLSQVYEL-LEKDYRMERPEGCPEKVYEL  451 (495)
T ss_dssp             ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC-CGGGHHHH-HHTTCCCCCCTTCCHHHHHH
T ss_pred             eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCC-CHHHHHHH-HHcCCCCCCCCCCCHHHHHH
Confidence            4344455677888887643      22     888  888 355444332 22222221 22222222234677899999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      |.+||+.||++|| +.+|++.|+.+..
T Consensus       452 i~~cl~~dP~~RPs~~el~~~L~~~~~  478 (495)
T 1opk_A          452 MRACWQWNPSDRPSFAEIHQAFETMFQ  478 (495)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred             HHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence            9999999999999 9999999998754

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=6e-38  Score=263.06  Aligned_cols=233  Identities=18%  Similarity=0.230  Sum_probs=185.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        ++..||+|.++.... ..+.+.+|+.++++++||||+++++++...+..++||||++++
T Consensus        18 ~G~~g~V~~~~~~--------~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   88 (268)
T 3sxs_A           18 SGQFGVVKLGKWK--------GQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNG   88 (268)
T ss_dssp             EETTEEEEEEEET--------TTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTC
T ss_pred             cCCCceEEEEEec--------CceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCC
Confidence            8999999999986        788899999976533 3467999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...      ...+++..++.++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++........
T Consensus        89 ~L~~~l~~~------~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  159 (268)
T 3sxs_A           89 CLLNYLRSH------GKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY  159 (268)
T ss_dssp             BHHHHHHHH------GGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE
T ss_pred             cHHHHHHHc------CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhhh
Confidence            999999533      345899999999999999999999   89999999999999999999999999999987765544


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|++|+...      ++     |++  +|+. ...|+..... .........+... ..+...++.+.++
T Consensus       160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~~l  237 (268)
T 3sxs_A          160 VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN-SEVVLKVSQGHRL-YRPHLASDTIYQI  237 (268)
T ss_dssp             EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH-HHHHHHHHTTCCC-CCCTTSCHHHHHH
T ss_pred             hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccCh-HHHHHHHHcCCCC-CCCCcChHHHHHH
Confidence            4444455667787776543      23     888  7873 5555433222 2222222222211 1123456789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +.+||+.||++|| +.++++.|+.+++.
T Consensus       238 i~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          238 MYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             HHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             HHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence            9999999999999 99999999998764

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=1.9e-36  Score=258.84  Aligned_cols=250  Identities=24%  Similarity=0.312  Sum_probs=195.0

Q ss_pred             ccccccHHHHHHHhhC--------------ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC----CcchHHHHHHHH
Q 044211           22 PIRSFCAEELKTTHNA--------------IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES----KPRTYDCCINNI   83 (292)
Q Consensus        22 ~~~~~~~~~~~~~~~~--------------~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~~e~   83 (292)
                      +...|++.++..++++              +|+||.||+|.+         +++.||+|.+...    .....+.+.+|+
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~---------~~~~vavK~~~~~~~~~~~~~~~~~~~E~   81 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV---------NNTTVAVKKLAAMVDITTEELKQQFDQEI   81 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES---------SSCEEEEEEECCCTTSCTTTHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE---------CCceEEEEEEecccCcchHHHHHHHHHHH
Confidence            4567999999998875              899999999998         7889999998653    223456799999


Q ss_pred             HHHHhcCCCCccceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 044211           84 VYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPV  163 (292)
Q Consensus        84 ~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i  163 (292)
                      .++++++||||+++++++...+..++||||+++|+|.+++....    ....+++..++.++.|++.||.|||   ..++
T Consensus        82 ~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i  154 (307)
T 2nru_A           82 KVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLD----GTPPLSWHMRCKIAQGAANGINFLH---ENHH  154 (307)
T ss_dssp             HHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGG----GCCCCCHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred             HHHHhcCCCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhcc----CCCCCCHHHHHHHHHHHHHHHHHHh---cCCe
Confidence            99999999999999999999999999999999999999995321    2456899999999999999999999   8999


Q ss_pred             ccCCCCCCceEecCCCceEEeecccccccCCCCc-cchhhhhcccccccccccCC-----C-----CeE--EEc-cchhh
Q 044211          164 IFRDFKLSNILFNEENVAKLFDFSFSISIPEGET-HISELLSGLRAFDLARLNED-----D-----GYV--VLL-DHIKK  229 (292)
Q Consensus       164 ~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~~-----~-----Gvi--el~-~~~~~  229 (292)
                      +|+||+|+||+++.++.+||+|||++........ .......|++.|++|+....     +     |++  +|+ |.. |
T Consensus       155 ~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~-p  233 (307)
T 2nru_A          155 IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLP-A  233 (307)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCC-S
T ss_pred             ecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCC-C
Confidence            9999999999999999999999999987654322 22334568899988875432     2     888  888 643 3


Q ss_pred             hhhccchh---hh----------cccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          230 YFEEDRLN---EI----------IDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       230 ~~~~~~~~---~~----------~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      +.......   .+          +...+.... ...+...+..+.+++.+||+.||.+|| +.++++.|+++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          234 VDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM-NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             BCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSC-SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             cccCcchHHHHHHHHHhhhhhhhhhhhccccc-cccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            32211100   00          000011111 112357788999999999999999999 9999999999865

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=9.2e-38  Score=265.58  Aligned_cols=241  Identities=21%  Similarity=0.230  Sum_probs=177.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..   ....+++.||+|.+........+.+.+|+.++++++||||+++++++..  ....++||||++
T Consensus        20 ~G~~g~V~~~~~~~---~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~   96 (295)
T 3ugc_A           20 KGNFGSVEMCRYDP---LQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP   96 (295)
T ss_dssp             ECSSEEEEEEEECT---TCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEECCT
T ss_pred             ccCCEEEEEEEEec---ccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEEeCC
Confidence            89999999998421   0111789999999987766666789999999999999999999999865  355899999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++...      ...+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++......
T Consensus        97 ~~~L~~~l~~~------~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  167 (295)
T 3ugc_A           97 YGSLRDYLQKH------KERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQD  167 (295)
T ss_dssp             TCBHHHHHHHC------GGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSCC-----
T ss_pred             CCCHHHHHHhc------ccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCcccccccCC
Confidence            99999999432      345899999999999999999999   899999999999999999999999999999877543


Q ss_pred             Cc--cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccc--------------hhhhcccccc
Q 044211          196 ET--HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDR--------------LNEIIDPLIM  245 (292)
Q Consensus       196 ~~--~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~--------------~~~~~~~~~~  245 (292)
                      ..  .......++..|++|+....      +     |++  +|+ |..+.......              ...... .+.
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  246 (295)
T 3ugc_A          168 KEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE-LLK  246 (295)
T ss_dssp             --------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHH-HHH
T ss_pred             cceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHH-HHh
Confidence            22  12233446677877775432      2     888  888 54321110000              001111 111


Q ss_pred             cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          246 GDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       246 ~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      .....+.+..+++.+.+++.+||+.||++|| +.|+++.|++++++.
T Consensus       247 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l  293 (295)
T 3ugc_A          247 NNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM  293 (295)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             ccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence            1222222346788999999999999999999 999999999998753

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=4.3e-37  Score=264.83  Aligned_cols=231  Identities=18%  Similarity=0.188  Sum_probs=178.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCc----ceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQI----PILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~----~~lv~e~  113 (292)
                      +|+||.||+|.+         .++.||||.+.... ........|+.++++++||||+++++++.....    +++||||
T Consensus        34 ~G~~g~Vy~~~~---------~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~  103 (322)
T 3soc_A           34 RGRFGCVWKAQL---------LNEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAF  103 (322)
T ss_dssp             CSTTCEEEEEEE---------TTEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred             ccCceEEEEEEE---------CCCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEec
Confidence            899999999998         78999999997542 233456678999999999999999999987543    6999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC----------CcccCCCCCCceEecCCCceEE
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR----------PVIFRDFKLSNILFNEENVAKL  183 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~----------~i~H~dlk~~nili~~~~~~kl  183 (292)
                      +++|+|.++++        ...+++..+..++.|++.||.|||   +.          +++|+||||+|||++.++.+||
T Consensus       104 ~~~g~L~~~l~--------~~~~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL  172 (322)
T 3soc_A          104 HEKGSLSDFLK--------ANVVSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACI  172 (322)
T ss_dssp             CTTCBHHHHHH--------HCCBCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCSGGGEEECTTCCEEE
T ss_pred             CCCCCHHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCChHhEEECCCCeEEE
Confidence            99999999994        235899999999999999999999   78          9999999999999999999999


Q ss_pred             eecccccccCCCCcc-chhhhhcccccccccccCC-----------C-----CeE--EEc-cchhhhhhcc---------
Q 044211          184 FDFSFSISIPEGETH-ISELLSGLRAFDLARLNED-----------D-----GYV--VLL-DHIKKYFEED---------  234 (292)
Q Consensus       184 ~Dfg~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~~-----------~-----Gvi--el~-~~~~~~~~~~---------  234 (292)
                      +|||++......... ......||+.|++||....           +     |++  ||+ |+. |+....         
T Consensus       173 ~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~-pf~~~~~~~~~~~~~  251 (322)
T 3soc_A          173 ADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCT-AADGPVDEYMLPFEE  251 (322)
T ss_dssp             CCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBT-TSSSCCCCCCCTTHH
T ss_pred             ccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCC-CCCCCcchhccchhh
Confidence            999999877544322 2334578999988887543           1     888  888 543 222110         


Q ss_pred             ------chhhhcccccccCC-CCC----CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          235 ------RLNEIIDPLIMGDR-SCS----GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       235 ------~~~~~~~~~~~~~~-~~~----~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                            .............. +..    ....++..+.+|+.+||+.||++|| +.++++.|+++.+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          252 EIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             HHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence                  00111111111111 111    1135677899999999999999999 99999999999864

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=8.8e-38  Score=264.11  Aligned_cols=233  Identities=17%  Similarity=0.226  Sum_probs=181.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++.+.        ++..||+|.++.... ..+.+.+|+.++++++||||+++++++...+..++||||+++|
T Consensus        34 ~G~~g~V~~~~~~--------~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~  104 (283)
T 3gen_A           34 TGQFGVVKYGKWR--------GQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANG  104 (283)
T ss_dssp             ---CEEEEEEEET--------TTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTTC
T ss_pred             CCCCceEEEEEEc--------CCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCCC
Confidence            8999999999987        788999999986532 3467999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..      ....+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++........
T Consensus       105 ~L~~~l~~------~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~  175 (283)
T 3gen_A          105 CLLNYLRE------MRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY  175 (283)
T ss_dssp             BHHHHHHC------GGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHH
T ss_pred             cHHHHHHH------hccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEcccccccccccccc
Confidence            99999942      2456999999999999999999999   89999999999999999999999999999987754433


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......+++.|++|+....      +     |++  +|+. ...|+..... .........+.. ...+...++.+.++
T Consensus       176 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~l~~l  253 (283)
T 3gen_A          176 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN-SETAEHIAQGLR-LYRPHLASEKVYTI  253 (283)
T ss_dssp             HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCH-HHHHHHHHTTCC-CCCCTTCCHHHHHH
T ss_pred             ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccCh-hHHHHHHhcccC-CCCCCcCCHHHHHH
Confidence            33334456777887775432      2     888  8873 5545433221 122221111111 11113456789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +.+||+.||++|| +.++++.|+++...
T Consensus       254 i~~~l~~~p~~Rps~~~ll~~L~~~~~~  281 (283)
T 3gen_A          254 MYSCWHEKADERPTFKILLSNILDVMDE  281 (283)
T ss_dssp             HHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence            9999999999999 99999999998754

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=8.9e-38  Score=281.17  Aligned_cols=233  Identities=16%  Similarity=0.233  Sum_probs=184.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        ++..||||.++... ...+.+.+|+.++++++||||+++++++. ....++||||+.+|
T Consensus       198 ~G~fg~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~~g  267 (454)
T 1qcf_A          198 AGQFGEVWMATYN--------KHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFMAKG  267 (454)
T ss_dssp             CCSSEEEEEEEET--------TTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCCTTC
T ss_pred             cCCceEEEEEEEC--------CccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeecCCC
Confidence            8999999999996        78899999998653 35678999999999999999999999986 56789999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.++++..     ....+++..++.++.|++.||.|||   ..+++||||||+|||++.++.+||+|||+++....+..
T Consensus       268 ~L~~~l~~~-----~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~  339 (454)
T 1qcf_A          268 SLLDFLKSD-----EGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEY  339 (454)
T ss_dssp             BHHHHHHSH-----HHHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHH
T ss_pred             cHHHHHHhc-----cCCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCce
Confidence            999999422     1235788999999999999999999   89999999999999999999999999999987754332


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|++||...      ++     |++  ||+. ...|+.... ..+.+.....+ ...+.+..+++.+.+|
T Consensus       340 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~-~~~~~~~i~~~-~~~~~~~~~~~~l~~l  417 (454)
T 1qcf_A          340 TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS-NPEVIRALERG-YRMPRPENCPEELYNI  417 (454)
T ss_dssp             HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-HHHHHHHHHHT-CCCCCCTTSCHHHHHH
T ss_pred             eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCC-HHHHHHHHHcC-CCCCCCCCCCHHHHHH
Confidence            2223344567888877543      22     888  8883 555554322 22222222222 2222234778899999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      |.+||+.||++|| +.+|++.|+.+...
T Consensus       418 i~~cl~~dp~~RPt~~~i~~~L~~~~~~  445 (454)
T 1qcf_A          418 MMRCWKNRPEERPTFEYIQSVLDDFYTA  445 (454)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred             HHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence            9999999999999 99999999998653

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=2.1e-37  Score=271.96  Aligned_cols=238  Identities=17%  Similarity=0.217  Sum_probs=171.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..    ...++..||||.++... ....+.+.+|+.++++++||||+++++++...+..++||||+++
T Consensus        55 ~G~fg~Vy~~~~~~----~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  130 (373)
T 2qol_A           55 AGEFGEVCSGRLKL----PSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMEN  130 (373)
T ss_dssp             ECSSSEEEEC-CBC----TTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             eCCCeEEEEEEEec----CCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCCCC
Confidence            89999999998741    00157789999997653 33456799999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.++++      .....+++..++.++.|++.||.|||   ..+++||||||+|||++.++.+||+|||++.......
T Consensus       131 ~sL~~~l~------~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  201 (373)
T 2qol_A          131 GSLDSFLR------KHDAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDP  201 (373)
T ss_dssp             CBHHHHHH------TTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred             CcHHHHHH------hCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccccccCC
Confidence            99999994      23456999999999999999999999   8999999999999999999999999999998775433


Q ss_pred             ccc--hhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 THI--SELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~~--~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ...  .....++..|++||...      ++     |++  ||+ ....|+.... ..........+. ..+.+..++..+
T Consensus       202 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~-~~~~~~~i~~~~-~~~~~~~~~~~l  279 (373)
T 2qol_A          202 EAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMS-NQDVIKAVDEGY-RLPPPMDCPAAL  279 (373)
T ss_dssp             ------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCC-HHHHHHHHHTTE-ECCCCTTCBHHH
T ss_pred             ccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHHcCC-CCCCCccccHHH
Confidence            221  12223466788877543      22     888  877 3555554332 222222111111 111123667889


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+++.+||+.||++|| +.++++.|+.+.+.
T Consensus       280 ~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  310 (373)
T 2qol_A          280 YQLMLDCWQKDRNNRPKFEQIVSILDKLIRN  310 (373)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence            9999999999999999 99999999998643

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2.3e-37  Score=259.18  Aligned_cols=234  Identities=21%  Similarity=0.275  Sum_probs=185.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        +++.||+|.+..... ..+.+.+|+.++++++||||+++++++...+..++||||++++
T Consensus        18 ~G~~g~V~~~~~~--------~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   88 (267)
T 3t9t_A           18 SGQFGLVHLGYWL--------NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHG   88 (267)
T ss_dssp             EETTEEEEEEEET--------TTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTC
T ss_pred             CCCceeEEEEEec--------CCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCC
Confidence            8999999999996        788999999986533 3467999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..      ....+++..++.++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++........
T Consensus        89 ~L~~~~~~------~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~  159 (267)
T 3t9t_A           89 CLSDYLRT------QRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY  159 (267)
T ss_dssp             BHHHHHHH------TTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred             cHHHHHhh------CcccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEcccccccccccccc
Confidence            99999942      2356899999999999999999999   89999999999999999999999999999987654332


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|.+|+....      +     |++  +|+ +...|+... ...........+... ..+...+..+.++
T Consensus       160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-~~~~~~~~i~~~~~~-~~~~~~~~~l~~l  237 (267)
T 3t9t_A          160 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-SNSEVVEDISTGFRL-YKPRLASTHVYQI  237 (267)
T ss_dssp             HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-CHHHHHHHHHTTCCC-CCCTTSCHHHHHH
T ss_pred             cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCC-CHHHHHHHHhcCCcC-CCCccCcHHHHHH
Confidence            22334456778887775432      2     888  887 355554332 222222222222111 1123556789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      +.+||+.||++|| +.++++.|+++.+++
T Consensus       238 i~~~l~~~p~~Rps~~~ll~~L~~l~~~~  266 (267)
T 3t9t_A          238 MNHCWRERPEDRPAFSRLLRQLAEIAESG  266 (267)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence            9999999999999 999999999998754

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=5.8e-37  Score=275.52  Aligned_cols=228  Identities=19%  Similarity=0.253  Sum_probs=180.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCC-cceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ-IPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+         +++.||||.++...  ..+.+.+|+.++++++||||+++++++.... ..++||||+++
T Consensus       203 ~G~fg~V~~~~~---------~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~  271 (450)
T 1k9a_A          203 KGEFGDVMLGDY---------RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK  271 (450)
T ss_dssp             ECSSEEEEEEEE---------TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTT
T ss_pred             CcCCeeEEEEEe---------cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCC
Confidence            899999999998         78899999998653  4567999999999999999999999987655 68999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.++++..+     ...+++..++.++.|++.||.|||   +.+++||||||+|||++.++.+||+|||+++..... 
T Consensus       272 g~L~~~l~~~~-----~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~-  342 (450)
T 1k9a_A          272 GSLVDYLRSRG-----RSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-  342 (450)
T ss_dssp             CBHHHHHHHHC-----TTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC---
T ss_pred             CcHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc-
Confidence            99999996432     345789999999999999999999   899999999999999999999999999999855322 


Q ss_pred             ccchhhhhcccccccccccCCC-----------CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNEDD-----------GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                         .....++..|++||.....           |++  ||+. ...|+... ...+.......+. ..+.+..+++.+.+
T Consensus       343 ---~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~-~~~~~~~~i~~~~-~~~~p~~~~~~l~~  417 (450)
T 1k9a_A          343 ---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI-PLKDVVPRVEKGY-KMDAPDGCPPAVYD  417 (450)
T ss_dssp             -------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTS-CTTTHHHHHHTTC-CCCCCTTCCHHHHH
T ss_pred             ---ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHcCC-CCCCCCcCCHHHHH
Confidence               1223567788888765322           888  8883 45444332 2222222222222 22223477889999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ||.+||+.||++|| +.++++.|+.+...
T Consensus       418 li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          418 VMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence            99999999999999 99999999998764

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=1.7e-37  Score=270.96  Aligned_cols=248  Identities=17%  Similarity=0.211  Sum_probs=184.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhc-CCCCccceeeeeecCCc-ceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQM-IHRCIFKLIGCCLETQI-PILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~-~~lv~e~~  114 (292)
                      +|+||.||+|.+..  .....+++.||||.++.... ...+.+.+|+.++.++ +||||+++++++...+. .++||||+
T Consensus        32 ~G~~g~Vy~~~~~~--~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~iv~e~~  109 (359)
T 3vhe_A           32 RGAFGQVIEADAFG--IDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFC  109 (359)
T ss_dssp             ECSSEEEEEEEEES--SSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECC
T ss_pred             CCCCceEEEEEecc--ccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEEEEEec
Confidence            89999999998421  00112678999999976533 3446799999999999 78999999999987554 89999999


Q ss_pred             CCCChhHHhhhhCCCC-----------------------------------------------------------CCCCC
Q 044211          115 NCGSLADRIRIHHTPQ-----------------------------------------------------------PQHEP  135 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~-----------------------------------------------------------~~~~~  135 (292)
                      ++|+|.+++.......                                                           .....
T Consensus       110 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (359)
T 3vhe_A          110 KFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDF  189 (359)
T ss_dssp             TTEEHHHHHHTTTTSBCSCC------------------------------------------------------CTTTTC
T ss_pred             CCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcccccchhccc
Confidence            9999999996432100                                                           00223


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC-ccchhhhhcccccccccc
Q 044211          136 LLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE-THISELLSGLRAFDLARL  214 (292)
Q Consensus       136 l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~g~~~y~~~~~  214 (292)
                      +++..++.++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++....... ........||..|++||.
T Consensus       190 l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~  266 (359)
T 3vhe_A          190 LTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPET  266 (359)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhh
Confidence            899999999999999999999   8999999999999999999999999999998664332 223445667888988875


Q ss_pred             cCCC-----------CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHH
Q 044211          215 NEDD-----------GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVD  279 (292)
Q Consensus       215 ~~~~-----------Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~e  279 (292)
                      ....           |++  ||+. ...|+........... .+........+..+++.+.+++.+||+.||++|| +.+
T Consensus       267 ~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~e  345 (359)
T 3vhe_A          267 IFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR-RLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSE  345 (359)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHH-HHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHH-HHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHH
Confidence            4322           888  8873 5555543322222211 1222212222235677899999999999999999 999


Q ss_pred             HHHHHHHhhhcC
Q 044211          280 VAKKTQANVCSG  291 (292)
Q Consensus       280 l~~~L~~l~~~~  291 (292)
                      +++.|+++.+..
T Consensus       346 ll~~L~~~~~~~  357 (359)
T 3vhe_A          346 LVEHLGNLLQAN  357 (359)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988654

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=268.53  Aligned_cols=248  Identities=17%  Similarity=0.219  Sum_probs=188.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+....+.....+..||+|.++... ......+.+|+.+++++ +||||+++++++...+..++||||++
T Consensus        79 ~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~  158 (382)
T 3tt0_A           79 EGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYAS  158 (382)
T ss_dssp             ECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             cCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCceEEEEEecC
Confidence            89999999998642111122255789999997653 33446799999999999 89999999999999999999999999


Q ss_pred             CCChhHHhhhhCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          116 CGSLADRIRIHHTP---------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       116 ~gsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      +|+|.+++......         ......+++..++.++.|++.||.|||   +.+++|+||||+|||++.++.+||+||
T Consensus       159 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DF  235 (382)
T 3tt0_A          159 KGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADF  235 (382)
T ss_dssp             TCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSC
T ss_pred             CCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEEcCCCcEEEccc
Confidence            99999999654321         122356999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCc-cchhhhhcccccccccccCCC-----------CeE--EEcc-chhhhhhccchhhhcccccccCCCCC
Q 044211          187 SFSISIPEGET-HISELLSGLRAFDLARLNEDD-----------GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       187 g~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      |++........ .......++..|++||.....           |++  +|+. ...|+... ...+.......+... .
T Consensus       236 G~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~-~~~~~~~~~~~~~~~-~  313 (382)
T 3tt0_A          236 GLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV-PVEELFKLLKEGHRM-D  313 (382)
T ss_dssp             SCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-CHHHHHHHHHTTCCC-C
T ss_pred             CcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHcCCCC-C
Confidence            99987654332 223345567889888764322           888  7773 55444332 223333322222221 1


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+..+++.+.+|+.+||+.||++|| +.++++.|+.+...
T Consensus       314 ~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~  353 (382)
T 3tt0_A          314 KPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVAL  353 (382)
T ss_dssp             CCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            2236677899999999999999999 99999999998643

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=8.9e-37  Score=258.49  Aligned_cols=234  Identities=18%  Similarity=0.256  Sum_probs=187.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       ++..||+|.+.... ...+.+.+|+.++++++||||+++++++...+..++||||++++
T Consensus        23 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~   94 (288)
T 3kfa_A           23 GGQYGEVYEGVWKK-------YSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYG   94 (288)
T ss_dssp             GGTTCSEEEEEEGG-------GTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTE
T ss_pred             CCCceeEEEeEecC-------CCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCCCC
Confidence            89999999999975       78999999997653 35577999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...     ....+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++........
T Consensus        95 ~L~~~~~~~-----~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  166 (288)
T 3kfa_A           95 NLLDYLREC-----NRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY  166 (288)
T ss_dssp             EHHHHHHHC-----CTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSS
T ss_pred             cHHHHHHhc-----ccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccCCcc
Confidence            999999532     3456999999999999999999999   89999999999999999999999999999987765554


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......+++.|.+|+....      +     |++  +|+. ...|+... ........ +........+..+++.+.++
T Consensus       167 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~l  244 (288)
T 3kfa_A          167 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI-DLSQVYEL-LEKDYRMERPEGCPEKVYEL  244 (288)
T ss_dssp             EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-CGGGHHHH-HHTTCCCCCCTTCCHHHHHH
T ss_pred             ccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHH-HhccCCCCCCCCCCHHHHHH
Confidence            44455567788988875432      2     888  7773 55444332 22222221 11121222224667889999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      +.+||+.||.+|| +.++++.|+.+..
T Consensus       245 i~~~l~~dp~~Rps~~~~~~~l~~~~~  271 (288)
T 3kfa_A          245 MRACWQWNPSDRPSFAEIHQAFETMFQ  271 (288)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHhCCChhhCcCHHHHHHHHHHHHH
Confidence            9999999999999 9999999988764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.5e-37  Score=262.99  Aligned_cols=234  Identities=19%  Similarity=0.226  Sum_probs=175.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.+...   .....+.+.+|+..+++++||||+++++++...+..++||||+
T Consensus        21 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~   93 (294)
T 4eqm_A           21 GGGMSTVYLAEDTI-------LNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYI   93 (294)
T ss_dssp             EETTEEEEEEEETT-------TCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cCCCEEEEEEEECC-------CCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCC
Confidence            89999999999865       8899999998543   2234467899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++..       ...+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++.....
T Consensus        94 ~g~~L~~~l~~-------~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  163 (294)
T 4eqm_A           94 EGPTLSEYIES-------HGPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSE  163 (294)
T ss_dssp             CSCBHHHHHHH-------HCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC--
T ss_pred             CCCCHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCcccccc
Confidence            99999999943       346899999999999999999999   89999999999999999999999999999987765


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEccchhhhhhccchhhhcccccccCCCCC---CchHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCS---GNQQQLQ  258 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  258 (292)
                      ..........||+.|++||....      +     |++  +|+....|+........... .+....+..   .+...++
T Consensus       164 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  242 (294)
T 4eqm_A          164 TSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIK-HIQDSVPNVTTDVRKDIPQ  242 (294)
T ss_dssp             -----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHH-HHSSCCCCHHHHSCTTSCH
T ss_pred             ccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHH-HhhccCCCcchhcccCCCH
Confidence            44444455678999988875432      2     888  88833334433222111111 111111110   0124567


Q ss_pred             HHHHHHhHhcCCCCCCCC--HHHHHHHHHHhhh
Q 044211          259 AFAHLIFECVNESPVDRP--MVDVAKKTQANVC  289 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP--~~el~~~L~~l~~  289 (292)
                      .+.+++.+||+.||.+||  +.++.+.|+.+..
T Consensus       243 ~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~  275 (294)
T 4eqm_A          243 SLSNVILRATEKDKANRYKTIQEMKDDLSSVLH  275 (294)
T ss_dssp             HHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence            899999999999999999  8889998887653

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=5.9e-37  Score=258.91  Aligned_cols=237  Identities=17%  Similarity=0.211  Sum_probs=170.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..    ....+..||+|.++... ....+.+.+|+.++++++||||+++++++. .+..++||||+++
T Consensus        25 ~G~~g~Vy~~~~~~----~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~~~~   99 (281)
T 1mp8_A           25 EGQFGDVHQGIYMS----PENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTL   99 (281)
T ss_dssp             ECSSSEEEEEEECC----C--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECCTT
T ss_pred             ecCCeeEEEEEEec----CCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEEEEecCCC
Confidence            89999999998742    00134579999987643 334567899999999999999999999984 5678999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++..      ....+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++.......
T Consensus       100 ~~L~~~l~~------~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  170 (281)
T 1mp8_A          100 GELRSFLQV------RKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST  170 (281)
T ss_dssp             EEHHHHHHH------TTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC-----------
T ss_pred             CCHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccCccc
Confidence            999999942      2346899999999999999999999   8999999999999999999999999999998776544


Q ss_pred             ccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      ........+++.|++||....      +     |++  ||+ +...|+.... ....+.....+.. .+.+..+++.+.+
T Consensus       171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~-~~~~~~~i~~~~~-~~~~~~~~~~l~~  248 (281)
T 1mp8_A          171 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK-NNDVIGRIENGER-LPMPPNCPPTLYS  248 (281)
T ss_dssp             --------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC-GGGHHHHHHTTCC-CCCCTTCCHHHHH
T ss_pred             ccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC-HHHHHHHHHcCCC-CCCCCCCCHHHHH
Confidence            433444556778988876432      1     888  887 4554543322 2222222222221 1122467789999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ++.+||+.||++|| +.++++.|+++.+.
T Consensus       249 li~~~l~~~p~~Rps~~~l~~~l~~~~~~  277 (281)
T 1mp8_A          249 LMTKCWAYDPSRRPRFTELKAQLSTILEE  277 (281)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            99999999999999 99999999998653

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=4.8e-38  Score=288.13  Aligned_cols=233  Identities=18%  Similarity=0.233  Sum_probs=182.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        .+..||||.++... ...+.+.+|+.+|++++|+||+++++++.. ...++||||+.+|
T Consensus       277 ~G~fg~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~g  346 (535)
T 2h8h_A          277 QGCFGEVWMGTWN--------GTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKG  346 (535)
T ss_dssp             ECSSEEEEEEEET--------TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTE
T ss_pred             cCCCeEEEEEEEC--------CCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehhcCC
Confidence            8999999999996        67889999998653 345779999999999999999999999876 6789999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.++++..     ....+++..++.++.||+.||.|||   ..+|+||||||+|||++.++.+||+|||++.....+..
T Consensus       347 sL~~~l~~~-----~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  418 (535)
T 2h8h_A          347 SLLDFLKGE-----TGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY  418 (535)
T ss_dssp             EHHHHHSHH-----HHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHH
T ss_pred             cHHHHHhhc-----CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCce
Confidence            999999422     1345899999999999999999999   89999999999999999999999999999987654332


Q ss_pred             cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|++||...      ++     |++  ||+ +...|+... ...+.++....+. ..+.+..++..+.+|
T Consensus       419 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~-~~~~~~~~i~~~~-~~~~~~~~~~~l~~l  496 (535)
T 2h8h_A          419 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-VNREVLDQVERGY-RMPCPPECPESLHDL  496 (535)
T ss_dssp             HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTC-CHHHHHHHHHTTC-CCCCCTTCCHHHHHH
T ss_pred             ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHcCC-CCCCCCCCCHHHHHH
Confidence            2223344667888877542      22     888  888 355454332 2222222222222 122224677899999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      |.+||+.||++|| +.+|++.|+.+..+
T Consensus       497 i~~cl~~dP~~RPt~~~l~~~L~~~~~~  524 (535)
T 2h8h_A          497 MCQCWRKEPEERPTFEYLQAFLEDYFTS  524 (535)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred             HHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence            9999999999999 99999999987543

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=4e-36  Score=254.41  Aligned_cols=227  Identities=18%  Similarity=0.254  Sum_probs=175.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcch-------HHHHHHHHHHHHhcCCCCccceeeeeecCCcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRT-------YDCCINNIVYASQMIHRCIFKLIGCCLETQIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~-------~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv  110 (292)
                      +|+||.||+|.+..       +++.||+|.+.......       .+.+.+|+.++++++||||+++++++....  ++|
T Consensus        29 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~lv   99 (287)
T 4f0f_A           29 KGGFGLVHKGRLVK-------DKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP--RMV   99 (287)
T ss_dssp             CCSSSCEEEEEETT-------TCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--EEE
T ss_pred             cCCceeEEEEEEcC-------CceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--eEE
Confidence            89999999999865       89999999986532211       167899999999999999999999986544  799


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--cccCCCCCCceEecCCCc-----eEE
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP--VIFRDFKLSNILFNEENV-----AKL  183 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~--i~H~dlk~~nili~~~~~-----~kl  183 (292)
                      |||+++|+|.+++.      .....+++..++.++.|++.||.|||   ..+  ++|+||||+||+++.++.     +||
T Consensus       100 ~e~~~~~~L~~~l~------~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl  170 (287)
T 4f0f_A          100 MEFVPCGDLYHRLL------DKAHPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCAKV  170 (287)
T ss_dssp             EECCTTCBHHHHHH------CTTSCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCEEE
T ss_pred             EEecCCCCHHHHHh------cccCCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeEEe
Confidence            99999999998883      34567999999999999999999999   888  999999999999987776     999


Q ss_pred             eecccccccCCCCccchhhhhcccccccccccC--CC-----------CeE--EEc-cchhhhhhccc-hhhhccccccc
Q 044211          184 FDFSFSISIPEGETHISELLSGLRAFDLARLNE--DD-----------GYV--VLL-DHIKKYFEEDR-LNEIIDPLIMG  246 (292)
Q Consensus       184 ~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~--~~-----------Gvi--el~-~~~~~~~~~~~-~~~~~~~~~~~  246 (292)
                      +|||++......    .....|++.|.+|+...  ..           |++  +|+ |+. |+..... ...........
T Consensus       171 ~Dfg~~~~~~~~----~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~-pf~~~~~~~~~~~~~~~~~  245 (287)
T 4f0f_A          171 ADFGLSQQSVHS----VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEG-PFDEYSYGKIKFINMIREE  245 (287)
T ss_dssp             CCCTTCBCCSSC----EECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSC-TTTTCCCCHHHHHHHHHHS
T ss_pred             CCCCcccccccc----ccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCC-CCccccccHHHHHHHHhcc
Confidence            999999755432    23456899999998752  11           888  888 544 3322111 11111111112


Q ss_pred             CCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          247 DRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       247 ~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      ......+..+++.+.+++.+||+.||++|| +.++++.|+++
T Consensus       246 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          246 GLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             CCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             CCCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence            222222246778999999999999999999 99999999864

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1e-36  Score=264.35  Aligned_cols=246  Identities=20%  Similarity=0.232  Sum_probs=184.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+...  ....+++.||+|.++... ......+.+|+.++++++||||+++++++...+..++||||+++
T Consensus        57 ~G~~g~Vy~~~~~~~--~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  134 (343)
T 1luf_A           57 EGAFGRVFQARAPGL--LPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAY  134 (343)
T ss_dssp             ECSSCEEEEEEEETS--STTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             ecCCeeEEEEEecCc--CCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCceEEEEecCCC
Confidence            899999999998410  000145899999997653 33456799999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCC-----------------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC
Q 044211          117 GSLADRIRIHHTP-----------------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN  179 (292)
Q Consensus       117 gsL~~~l~~~~~~-----------------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~  179 (292)
                      |+|.+++..+...                 ......+++..++.++.|++.||.|||   +.+++|+||||+||+++.++
T Consensus       135 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~  211 (343)
T 1luf_A          135 GDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENM  211 (343)
T ss_dssp             CBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG
T ss_pred             CcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEECCCC
Confidence            9999999654211                 011367999999999999999999999   89999999999999999999


Q ss_pred             ceEEeecccccccCCCCc-cchhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhccccc
Q 044211          180 VAKLFDFSFSISIPEGET-HISELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLI  244 (292)
Q Consensus       180 ~~kl~Dfg~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~  244 (292)
                      .+||+|||++........ .......++..|++||....      +     |++  +|+. ...|+... ..........
T Consensus       212 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~-~~~~~~~~~~  290 (343)
T 1luf_A          212 VVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM-AHEEVIYYVR  290 (343)
T ss_dssp             CEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS-CHHHHHHHHH
T ss_pred             eEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCC-ChHHHHHHHh
Confidence            999999999987643322 22234567888988875432      2     888  8873 55455432 2222222222


Q ss_pred             ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          245 MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+.... .+..+++.+.+++.+||+.||++|| +.++++.|+++.+.
T Consensus       291 ~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~  336 (343)
T 1luf_A          291 DGNILA-CPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCER  336 (343)
T ss_dssp             TTCCCC-CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC-
T ss_pred             CCCcCC-CCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhh
Confidence            222211 1236677899999999999999999 99999999998754

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=2.5e-36  Score=258.53  Aligned_cols=238  Identities=18%  Similarity=0.245  Sum_probs=174.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.+...   .......+.+|+.++++++||||+++++++...+..++||||+
T Consensus        42 ~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~  114 (310)
T 2wqm_A           42 RGQFSEVYRAACLL-------DGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELA  114 (310)
T ss_dssp             CC--CEEEEEEETT-------TCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             CCCCceEEEEEEcC-------CCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEEecC
Confidence            89999999999865       8999999998753   2334567899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++....   .....+++..++.++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.....
T Consensus       115 ~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~  188 (310)
T 2wqm_A          115 DAGDLSRMIKHFK---KQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  188 (310)
T ss_dssp             CSCBHHHHHHHHH---HTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC--------
T ss_pred             CCCCHHHHHHHhc---ccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecC
Confidence            9999999995432   13567899999999999999999999   89999999999999999999999999999986644


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhc-cchhhhcccccccCCCCCCchHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEE-DRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ... ......|+..|.+|+.....           |++  +|+ |.. |+... ...............+.......+..
T Consensus       189 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (310)
T 2wqm_A          189 KTT-AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQS-PFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEE  266 (310)
T ss_dssp             -----------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC-TTC---CCHHHHHHHHHTTCSCCCCTTTSCHH
T ss_pred             CCc-cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCC-CCcccchhHHHHHHHhhcccCCCCcccccCHH
Confidence            322 22345688899888765432           888  888 544 33322 11112222112222222222356778


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +.+++.+||+.||++|| +.++++.|+++...
T Consensus       267 l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~  298 (310)
T 2wqm_A          267 LRQLVNMCINPDPEKRPDVTYVYDVAKRMHAC  298 (310)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999 99999999998754

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=258.11  Aligned_cols=224  Identities=18%  Similarity=0.241  Sum_probs=171.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--------------------------chHHHHHHHHHHHHhcCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--------------------------RTYDCCINNIVYASQMIH   91 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--------------------------~~~~~~~~e~~~l~~l~h   91 (292)
                      +|+||.||+|....       +++.||+|.+.....                          ...+.+.+|+.++++++|
T Consensus        23 ~G~~g~Vy~a~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   95 (298)
T 2zv2_A           23 KGSYGVVKLAYNEN-------DNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDH   95 (298)
T ss_dssp             C--CCEEEEEEETT-------TTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCC
T ss_pred             ecCCEEEEEEEECC-------CCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCC
Confidence            89999999999865       899999999865421                          113468899999999999


Q ss_pred             CCccceeeeeec--CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCC
Q 044211           92 RCIFKLIGCCLE--TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFK  169 (292)
Q Consensus        92 ~niv~~~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk  169 (292)
                      |||+++++++..  ....++||||+++++|.+++        ....+++..+..++.|++.||.|||   ..+++|+|||
T Consensus        96 ~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~--------~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlk  164 (298)
T 2zv2_A           96 PNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP--------TLKPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIK  164 (298)
T ss_dssp             TTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSS--------CSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCC
T ss_pred             CCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHh--------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCC
Confidence            999999999986  55789999999999998876        3457999999999999999999999   8999999999


Q ss_pred             CCceEecCCCceEEeecccccccCCCCccchhhhhcccccccccccCC------C--------CeE--EEc-cchhhhhh
Q 044211          170 LSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNED------D--------GYV--VLL-DHIKKYFE  232 (292)
Q Consensus       170 ~~nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~--------Gvi--el~-~~~~~~~~  232 (292)
                      |+|||++.++.+||+|||++........ ......||+.|++||....      +        |++  +|+ |.. |+..
T Consensus       165 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~-pf~~  242 (298)
T 2zv2_A          165 PSNLLVGEDGHIKIADFGVSNEFKGSDA-LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQC-PFMD  242 (298)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECSSSSC-EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSC-SSCC
T ss_pred             HHHEEECCCCCEEEecCCCccccccccc-cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCC-CCCC
Confidence            9999999999999999999987754332 2234578999998887532      1        888  888 543 3322


Q ss_pred             ccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          233 EDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      . ................+.....++.+.+++.+||+.||++|| +.|+++
T Consensus       243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          243 E-RIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             S-SHHHHHHHHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             c-cHHHHHHHHhcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence            2 222222211222222222235667899999999999999999 999875

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=1.3e-36  Score=255.26  Aligned_cols=226  Identities=23%  Similarity=0.304  Sum_probs=166.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc----chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP----RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+         +++.||+|.+.....    ...+.+.+|+.+++.++||||+++++++...+..++||||
T Consensus        17 ~G~~g~V~~~~~---------~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (271)
T 3dtc_A           17 IGGFGKVYRAFW---------IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEF   87 (271)
T ss_dssp             EETTEEEEEEEE---------TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEEC
T ss_pred             cCCCeEEEEEEE---------cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEc
Confidence            899999999998         889999999865422    2346789999999999999999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC---cccCCCCCCceEecC--------CCceE
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP---VIFRDFKLSNILFNE--------ENVAK  182 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~---i~H~dlk~~nili~~--------~~~~k  182 (292)
                      +++++|.+++        ....+++..+..++.|++.||.|||   +.+   ++|+||||+||+++.        ++.+|
T Consensus        88 ~~~~~L~~~~--------~~~~~~~~~~~~i~~~l~~~l~~lH---~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~k  156 (271)
T 3dtc_A           88 ARGGPLNRVL--------SGKRIPPDILVNWAVQIARGMNYLH---DEAIVPIIHRDLKSSNILILQKVENGDLSNKILK  156 (271)
T ss_dssp             CTTEEHHHHH--------TSSCCCHHHHHHHHHHHHHHHHHHH---HSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEE
T ss_pred             CCCCCHHHHh--------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCCCceeecCCchHHEEEecccccccccCcceE
Confidence            9999999999        3457999999999999999999999   666   899999999999986        67899


Q ss_pred             EeecccccccCCCCccchhhhhcccccccccccC------CC-----CeE--EEccchhhhhhccchhhhcccccccCCC
Q 044211          183 LFDFSFSISIPEGETHISELLSGLRAFDLARLNE------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRS  249 (292)
Q Consensus       183 l~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (292)
                      |+|||++........   ....|++.|.+|+...      ++     |++  +|+....|+....... ...........
T Consensus       157 l~Dfg~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~~~  232 (271)
T 3dtc_A          157 ITDFGLAREWHRTTK---MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLA-VAYGVAMNKLA  232 (271)
T ss_dssp             ECCCCC----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHH-HHHHHHTSCCC
T ss_pred             EccCCcccccccccc---cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHhhhcCCCC
Confidence            999999986654322   2456888998887543      22     888  8883333443322211 11111222222


Q ss_pred             CCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          250 CSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       250 ~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      .+.+..+++.+.+++.+||+.||.+|| +.|+++.|+++
T Consensus       233 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          233 LPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             CCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence            222246677899999999999999999 99999999864

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.8e-36  Score=258.35  Aligned_cols=238  Identities=17%  Similarity=0.218  Sum_probs=179.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..   ....+++.||+|.++.. .......+.+|+.++++++||||+++++++...  ...++||||+
T Consensus        31 ~G~~g~V~~~~~~~---~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~  107 (302)
T 4e5w_A           31 EGHFGKVELCRYDP---EGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFL  107 (302)
T ss_dssp             ECSSEEEEEEEECT---TSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEECC
T ss_pred             CCCceEEEEEEEcc---ccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEEeC
Confidence            89999999998410   01128899999999754 334457799999999999999999999999876  5689999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++...      ...+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++.....
T Consensus       108 ~~~~L~~~l~~~------~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  178 (302)
T 4e5w_A          108 PSGSLKEYLPKN------KNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIET  178 (302)
T ss_dssp             TTCBHHHHHHHH------TTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred             CCCcHHHHHHhc------cccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECcccccccccC
Confidence            999999999533      346899999999999999999999   89999999999999999999999999999987755


Q ss_pred             CCc--cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhh-------------hhccchhhhcccccc
Q 044211          195 GET--HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKY-------------FEEDRLNEIIDPLIM  245 (292)
Q Consensus       195 ~~~--~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~-------------~~~~~~~~~~~~~~~  245 (292)
                      ...  .......||..|.+|+.....           |++  +|+ |..+..             ........... .+.
T Consensus       179 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  257 (302)
T 4e5w_A          179 DKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVN-TLK  257 (302)
T ss_dssp             TCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHH-HHH
T ss_pred             CCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHH-HHh
Confidence            432  223345677788888754322           888  888 544211             01111111111 111


Q ss_pred             cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          246 GDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       246 ~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      .....+.+..+++.+.+|+.+||+.||.+|| +.++++.|+++.
T Consensus       258 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          258 EGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            2222222246678999999999999999999 999999999875

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=4.1e-37  Score=260.69  Aligned_cols=235  Identities=19%  Similarity=0.261  Sum_probs=179.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+......+...+..||+|.+........+.+.+|+.++++++||||+++++++...+..++||||+++|
T Consensus        18 ~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   97 (289)
T 4fvq_A           18 QGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFG   97 (289)
T ss_dssp             EETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEEEECCTTC
T ss_pred             cCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEEEECCCCC
Confidence            89999999999853000001112579999997766666788999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc--------eEEeecccc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV--------AKLFDFSFS  189 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~--------~kl~Dfg~a  189 (292)
                      +|.+++..      ....+++..+..++.|++.||.|||   +.+++|+||||+|||++.++.        +||+|||++
T Consensus        98 ~L~~~l~~------~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~  168 (289)
T 4fvq_A           98 SLDTYLKK------NKNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGIS  168 (289)
T ss_dssp             BHHHHHHH------TGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSC
T ss_pred             CHHHHHHh------CCCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccceeeeccCccc
Confidence            99999942      2344899999999999999999999   899999999999999998877        999999998


Q ss_pred             cccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCch
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
                      .....     .....|+..|++||....       +     |++  +|+ |..+++...... .... ........+.  
T Consensus       169 ~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~-~~~~-~~~~~~~~~~--  239 (289)
T 4fvq_A          169 ITVLP-----KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQ-RKLQ-FYEDRHQLPA--  239 (289)
T ss_dssp             TTTSC-----HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-HHHH-HHHTTCCCCC--
T ss_pred             ccccC-----ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchH-HHHH-HhhccCCCCC--
Confidence            75532     234567888988876543       1     888  888 555444332221 1111 1111111111  


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ..++.+.+++.+||+.||++|| +.++++.|+++...
T Consensus       240 ~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p  276 (289)
T 4fvq_A          240 PKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTP  276 (289)
T ss_dssp             CSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred             CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence            2345799999999999999999 99999999987653

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=8.7e-37  Score=263.03  Aligned_cols=228  Identities=18%  Similarity=0.213  Sum_probs=175.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||+|.+..... ...+.+.+|+.+++.++||||+++++++...+..++||||+++
T Consensus        17 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~   89 (323)
T 3tki_A           17 EGAYGEVQLAVNRV-------TEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSG   89 (323)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             cCCCEEEEEEEECC-------CCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCC
Confidence            89999999999875       899999999865422 2335688999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++       .....+++..+..++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||++..+....
T Consensus        90 ~~L~~~l-------~~~~~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  159 (323)
T 3tki_A           90 GELFDRI-------EPDIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNN  159 (323)
T ss_dssp             EEGGGGS-------BTTTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred             CcHHHHH-------hhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCC
Confidence            9999999       34556999999999999999999999   8999999999999999999999999999998664322


Q ss_pred             -ccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 -THISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 -~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                       ........||+.|++||.....            |++  +|+ |.. |+....................+.....+..+
T Consensus       160 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (323)
T 3tki_A          160 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGEL-PWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAP  238 (323)
T ss_dssp             EECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSC-SCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHH
T ss_pred             cccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCC-CCCCCchHHHHHHHHhcccccCCccccCCHHH
Confidence             2223456789999888765322            888  888 544 33222211111111111111112224567789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+|+.+||+.||++|| +.|+++.
T Consensus       239 ~~li~~~L~~dP~~R~t~~eil~h  262 (323)
T 3tki_A          239 LALLHKILVENPSARITIPDIKKD  262 (323)
T ss_dssp             HHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             HHHHHHHccCChhhCcCHHHHhhC
Confidence            9999999999999999 9999764

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=1.9e-36  Score=259.46  Aligned_cols=246  Identities=19%  Similarity=0.254  Sum_probs=185.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..  ..+..+++.||+|.++.. .....+.+.+|+.++++++||||+++++++...+..++||||+++
T Consensus        33 ~G~~g~V~~~~~~~--~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  110 (314)
T 2ivs_A           33 EGEFGKVVKATAFH--LKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKY  110 (314)
T ss_dssp             ECSSSEEEEEEEET--GGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             ccCCeeEEEEEEec--cCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCceEEEEeecCC
Confidence            89999999998621  001115689999999764 334457789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCC-----------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC
Q 044211          117 GSLADRIRIHHTPQ-----------------PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN  179 (292)
Q Consensus       117 gsL~~~l~~~~~~~-----------------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~  179 (292)
                      |+|.+++.......                 .....+++..++.++.|++.||.|||   +.+++|+||||+||+++.++
T Consensus       111 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dikp~NIli~~~~  187 (314)
T 2ivs_A          111 GSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAARNILVAEGR  187 (314)
T ss_dssp             CBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTT
T ss_pred             CCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccchheEEEcCCC
Confidence            99999996543210                 01245899999999999999999999   89999999999999999999


Q ss_pred             ceEEeecccccccCCCCcc-chhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhccccc
Q 044211          180 VAKLFDFSFSISIPEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLI  244 (292)
Q Consensus       180 ~~kl~Dfg~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~  244 (292)
                      .+||+|||++......... ......+++.|++|+...      ++     |++  +|+. ...|+... ..........
T Consensus       188 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~-~~~~~~~~~~  266 (314)
T 2ivs_A          188 KMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI-PPERLFNLLK  266 (314)
T ss_dssp             EEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC-CGGGHHHHHH
T ss_pred             CEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHhh
Confidence            9999999999876543322 223345677888887442      22     888  7874 55444332 2222222222


Q ss_pred             ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          245 MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+. ....+..+++.+.+++.+||+.||++|| +.++++.|+++...
T Consensus       267 ~~~-~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  312 (314)
T 2ivs_A          267 TGH-RMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK  312 (314)
T ss_dssp             TTC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             cCC-cCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence            221 1122246677899999999999999999 99999999998653

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=2.9e-36  Score=258.25  Aligned_cols=247  Identities=16%  Similarity=0.199  Sum_probs=185.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+...  ....+++.||+|.++.... ...+.+.+|+.+++++ +||||+++++++...+..++||||++
T Consensus        33 ~G~~g~V~~~~~~~~--~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~  110 (313)
T 1t46_A           33 AGAFGKVVEATAYGL--IKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCC  110 (313)
T ss_dssp             ECSSEEEEEEEEESS--SSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             ccCCcceEEEEEeec--cccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEEecCC
Confidence            899999999985100  0011678999999986543 3456789999999999 89999999999999999999999999


Q ss_pred             CCChhHHhhhhCCC-----------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          116 CGSLADRIRIHHTP-----------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       116 ~gsL~~~l~~~~~~-----------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                      +|+|.+++......           ......+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+
T Consensus       111 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~  187 (313)
T 1t46_A          111 YGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKIC  187 (313)
T ss_dssp             TEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEETTTEEEEC
T ss_pred             CCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEcCCCCEEEc
Confidence            99999999654321           112346899999999999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCCcc-chhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCC
Q 044211          185 DFSFSISIPEGETH-ISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRS  249 (292)
Q Consensus       185 Dfg~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~  249 (292)
                      |||++......... ......++..|++||....      +     |++  +|+ +...|+........ +...+.....
T Consensus       188 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~~~~~~~~~~  266 (313)
T 1t46_A          188 DFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK-FYKMIKEGFR  266 (313)
T ss_dssp             CCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH-HHHHHHHTCC
T ss_pred             cccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH-HHHHhccCCC
Confidence            99999877544322 2234456778988875422      2     888  887 35555433221111 1111111111


Q ss_pred             CCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          250 CSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       250 ~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ...+...+..+.+++.+||+.||.+|| +.++++.|+++...
T Consensus       267 ~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  308 (313)
T 1t46_A          267 MLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (313)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence            222235677899999999999999999 99999999997654

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.6e-36  Score=255.25  Aligned_cols=238  Identities=15%  Similarity=0.204  Sum_probs=182.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcc-eEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIP-ILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~-~lv~e~~~  115 (292)
                      +|+||.||+|.+..    ...++..||+|.++.... ...+.+.+|+.++++++||||+++++++...+.. ++|+||+.
T Consensus        31 ~G~~g~Vy~~~~~~----~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~  106 (298)
T 3pls_A           31 KGHFGVVYHGEYID----QAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMC  106 (298)
T ss_dssp             EETTEEEEEEEEEC----SSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECCCT
T ss_pred             cCCCceEEEEEEec----CCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEeccc
Confidence            89999999998642    001334799999976433 3456789999999999999999999999876654 99999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++.      .....+++..++.++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++......
T Consensus       107 ~~~L~~~~~------~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  177 (298)
T 3pls_A          107 HGDLLQFIR------SPQRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDILDR  177 (298)
T ss_dssp             TCBHHHHHH------CTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTG
T ss_pred             CCCHHHHHh------ccccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCC
Confidence            999999994      23567899999999999999999999   899999999999999999999999999999866433


Q ss_pred             Cc---cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          196 ET---HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       196 ~~---~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ..   .......++..|.+|+.....           |++  +|+ |..+++.. .............. ..+.+..+++
T Consensus       178 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~  255 (298)
T 3pls_A          178 EYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRH-IDPFDLTHFLAQGR-RLPQPEYCPD  255 (298)
T ss_dssp             GGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTT-SCGGGHHHHHHTTC-CCCCCTTCCH
T ss_pred             cccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCcc-CCHHHHHHHhhcCC-CCCCCccchH
Confidence            21   112335567788777765432           888  888 55544433 22222222222222 2222235677


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+.+++.+||+.||.+|| +.++++.|+++...
T Consensus       256 ~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~  288 (298)
T 3pls_A          256 SLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSA  288 (298)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            899999999999999999 99999999998654

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=2.8e-36  Score=259.69  Aligned_cols=240  Identities=17%  Similarity=0.241  Sum_probs=170.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCe---EEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcc-----
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQER---PVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIP-----  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~---~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~-----  107 (292)
                      +|+||.||+|.+..       ++.   .||+|.++..  .....+.+.+|+.++++++||||+++++++......     
T Consensus        33 ~G~~g~Vy~~~~~~-------~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  105 (323)
T 3qup_A           33 KGEFGSVREAQLKQ-------EDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPI  105 (323)
T ss_dssp             EETTEEEEEEEC--------------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------C
T ss_pred             ccCCeEEEEEEEcc-------cCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCc
Confidence            89999999999863       333   7999998754  344567899999999999999999999999876654     


Q ss_pred             -eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          108 -ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       108 -~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                       ++|+||+.+|+|.+++..... ......+++..++.++.|++.||.|||   +.+++|+||||+|||++.++.+||+||
T Consensus       106 ~~~v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~kl~Df  181 (323)
T 3qup_A          106 PMVILPFMKHGDLHAFLLASRI-GENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCVADF  181 (323)
T ss_dssp             EEEEEECCTTCBHHHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCC
T ss_pred             cEEEEEeccCCcHHHHHHhhhc-cccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCEEEeec
Confidence             899999999999999954332 123446999999999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCcc-chhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          187 SFSISIPEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       187 g~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      |++......... ......+++.|.+|+...      ++     |++  +|+ +...|+.... ..........+.. ..
T Consensus       182 g~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~-~~~~~~~~~~~~~-~~  259 (323)
T 3qup_A          182 GLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIE-NAEIYNYLIGGNR-LK  259 (323)
T ss_dssp             CC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-GGGHHHHHHTTCC-CC
T ss_pred             cccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccC-hHHHHHHHhcCCC-CC
Confidence            999876543322 223345677787777532      22     888  777 3555554322 2222222222222 12


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+..+++.+.+++.+||+.||++|| +.++++.|+++...
T Consensus       260 ~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~  299 (323)
T 3qup_A          260 QPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH  299 (323)
T ss_dssp             CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            2246677899999999999999999 99999999998653

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.6e-36  Score=262.07  Aligned_cols=247  Identities=16%  Similarity=0.177  Sum_probs=181.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+...  ....++..||+|.++.. .......+.+|+.+++++ +||||+++++++...+..++||||++
T Consensus        55 ~G~~g~V~~~~~~~~--~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~  132 (344)
T 1rjb_A           55 SGAFGKVMNATAYGI--SKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCC  132 (344)
T ss_dssp             ECSSEEEEEEEEESC--SSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             CCCCceeEEeeeecc--ccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEEEEecCC
Confidence            999999999986210  00115678999999754 233456799999999999 89999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCC----------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC
Q 044211          116 CGSLADRIRIHHTPQ----------------PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN  179 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~----------------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~  179 (292)
                      +|+|.+++.......                .....+++..++.++.|++.||.|||   ..+++|+||||+||+++.++
T Consensus       133 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~  209 (344)
T 1rjb_A          133 YGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGK  209 (344)
T ss_dssp             TCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGGGEEEETTT
T ss_pred             CCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEEcCCC
Confidence            999999995432110                11245899999999999999999999   89999999999999999999


Q ss_pred             ceEEeecccccccCCCCc-cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhccccc
Q 044211          180 VAKLFDFSFSISIPEGET-HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLI  244 (292)
Q Consensus       180 ~~kl~Dfg~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~  244 (292)
                      .+||+|||++........ .......|++.|++|+....      +     |++  +|+ +...|+........ +...+
T Consensus       210 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~-~~~~~  288 (344)
T 1rjb_A          210 VVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDAN-FYKLI  288 (344)
T ss_dssp             EEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH-HHHHH
T ss_pred             cEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHH-HHHHH
Confidence            999999999987654332 22334556788988875422      2     888  888 35555544322111 11112


Q ss_pred             ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          245 MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ........+..+++.+.+|+.+||+.||.+|| +.++++.|+.+...
T Consensus       289 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  335 (344)
T 1rjb_A          289 QNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD  335 (344)
T ss_dssp             HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             hcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence            22222222235677899999999999999999 99999999987653

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=3.9e-36  Score=262.46  Aligned_cols=224  Identities=16%  Similarity=0.201  Sum_probs=178.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc------chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP------RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||+|....       +++.||+|.++....      ...+.+.+|+.++++++||||+++++++...+..++||
T Consensus        22 ~G~fg~V~~~~~~~-------~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~   94 (361)
T 2yab_A           22 SGQFAIVKKCREKS-------TGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVVLIL   94 (361)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCcCEEEEEEEECC-------CCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEEEE
Confidence            89999999999875       899999999875422      13467899999999999999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC----ceEEeecc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN----VAKLFDFS  187 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~----~~kl~Dfg  187 (292)
                      ||+++|+|.+++       .....+++..+..++.|++.||.|||   ..+|+|+||||+|||++.++    .+||+|||
T Consensus        95 e~~~gg~L~~~l-------~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG  164 (361)
T 2yab_A           95 ELVSGGELFDFL-------AQKESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG  164 (361)
T ss_dssp             ECCCSCBHHHHH-------TTCSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCS
T ss_pred             EcCCCCcHHHHH-------HhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecC
Confidence            999999999999       34567999999999999999999999   89999999999999998776    79999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC-
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG-  252 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  252 (292)
                      ++........  .....||+.|++||+....           |++  +|+ |.. |+... .....+..........+. 
T Consensus       165 ~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~-Pf~~~-~~~~~~~~i~~~~~~~~~~  240 (361)
T 2yab_A          165 LAHEIEDGVE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGAS-PFLGD-TKQETLANITAVSYDFDEE  240 (361)
T ss_dssp             SCEECCTTCC--CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCC-SSCCS-SHHHHHHHHHTTCCCCCHH
T ss_pred             CceEcCCCCc--cccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCC-CCCCC-CHHHHHHHHHhcCCCCCch
Confidence            9987754322  2345799999888865432           888  888 543 44332 222223322333322221 


Q ss_pred             -chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          253 -NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       253 -~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                       +...+..+.+||.+||+.||++|| +.|+++
T Consensus       241 ~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          241 FFSQTSELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence             123466899999999999999999 999885

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=2.9e-36  Score=258.81  Aligned_cols=239  Identities=14%  Similarity=0.102  Sum_probs=180.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec----CCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE----TQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~----~~~~~lv~e~  113 (292)
                      +|+||.||++....       +++.||+|.+........+.+.+|+.+++.++||||+++++++..    ....++|+||
T Consensus        39 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~  111 (317)
T 2buj_A           39 EGGFSYVDLVEGLH-------DGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPF  111 (317)
T ss_dssp             C--CEEEEEEEETT-------TCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEEC
T ss_pred             CCCCeEEEEEEecC-------CCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEe
Confidence            89999999999865       899999999876655666789999999999999999999999873    4468899999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +.+|+|.+++....   .....+++..++.++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++....
T Consensus       112 ~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~  185 (317)
T 2buj_A          112 FKRGTLWNEIERLK---DKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQAC  185 (317)
T ss_dssp             CTTCBHHHHHHHHH---TTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSCEESC
T ss_pred             CCCCcHHHHHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcchhcc
Confidence            99999999996442   23567999999999999999999999   8899999999999999999999999999987653


Q ss_pred             CCCcc--------chhhhhcccccccccccC---------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCC
Q 044211          194 EGETH--------ISELLSGLRAFDLARLNE---------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR  248 (292)
Q Consensus       194 ~~~~~--------~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~  248 (292)
                      .....        ......|++.|.+||...         ++     |++  +|+ |.. |+.........+........
T Consensus       186 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~-p~~~~~~~~~~~~~~~~~~~  264 (317)
T 2buj_A          186 IHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEG-PYDMVFQKGDSVALAVQNQL  264 (317)
T ss_dssp             EEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSC-TTHHHHHTTSCHHHHHHCC-
T ss_pred             cccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCC-ChhhhhcccchhhHHhhccC
Confidence            21111        112345788998888643         22     888  888 554 33221110000111111111


Q ss_pred             CCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          249 SCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       249 ~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ..+.....+..+.+++.+||+.||++|| +.++++.|+.+...
T Consensus       265 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~  307 (317)
T 2buj_A          265 SIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPP  307 (317)
T ss_dssp             -CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCC
T ss_pred             CCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCC
Confidence            1222235677899999999999999999 99999999998754

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=5.2e-36  Score=251.31  Aligned_cols=228  Identities=15%  Similarity=0.177  Sum_probs=179.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv~e~  113 (292)
                      +|+||.||+|.+         +++.||+|.++...  ....+.+.+|+.++++++||||+++++++...  +..++||||
T Consensus        20 ~G~~g~V~~~~~---------~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~   90 (271)
T 3kmu_A           20 ENHSGELWKGRW---------QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHW   90 (271)
T ss_dssp             EETTEEEEEEEE---------TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEEC
T ss_pred             CCCcceEEEEEE---------CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecc
Confidence            899999999999         78999999997643  33456799999999999999999999999876  778999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--cccCCCCCCceEecCCCceEEeecccccc
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP--VIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~--i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      +++|+|.+++..     .....+++..++.++.|++.||.|||   +.+  ++|+||||+||+++.++.++|+|||++..
T Consensus        91 ~~~~~L~~~l~~-----~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~  162 (271)
T 3kmu_A           91 MPYGSLYNVLHE-----GTNFVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFS  162 (271)
T ss_dssp             CTTCBHHHHHHS-----CSSCCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCT
T ss_pred             cCCCcHHHHHhh-----cccCCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceee
Confidence            999999999942     12346899999999999999999999   778  99999999999999999999999998765


Q ss_pred             cCCCCccchhhhhcccccccccccCC---------C-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchH
Q 044211          192 IPEGETHISELLSGLRAFDLARLNED---------D-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQ  255 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~~---------~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (292)
                      ...      ....||+.|++||....         +     |++  +|+....|+..... .............+..+..
T Consensus       163 ~~~------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~  235 (271)
T 3kmu_A          163 FQS------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSN-MEIGMKVALEGLRPTIPPG  235 (271)
T ss_dssp             TSC------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCH-HHHHHHHHHSCCCCCCCTT
T ss_pred             ecc------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccCh-HHHHHHHHhcCCCCCCCCC
Confidence            432      23467888988775432         2     888  88833334433222 2221222222222222246


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      +++.+.+++.+||+.||++|| +.++++.|+++.+
T Consensus       236 ~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          236 ISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            677899999999999999999 9999999999865

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=4.8e-36  Score=252.90  Aligned_cols=233  Identities=20%  Similarity=0.267  Sum_probs=182.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        ++..||+|.++... ...+.+.+|+.++++++||||+++++++. .+..++||||++++
T Consensus        23 ~G~~g~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~   92 (279)
T 1qpc_A           23 AGQFGEVWMGYYN--------GHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYMENG   92 (279)
T ss_dssp             EETTEEEEEEEET--------TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCTTC
T ss_pred             CCCCeEEEEEEEc--------CCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecCCCC
Confidence            8999999999986        77899999997653 34577999999999999999999999986 45689999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++........
T Consensus        93 ~L~~~l~~~-----~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  164 (279)
T 1qpc_A           93 SLVDFLKTP-----SGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY  164 (279)
T ss_dssp             BHHHHTTSH-----HHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE
T ss_pred             CHHHHHhcC-----CCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCccc
Confidence            999999311     1236899999999999999999999   89999999999999999999999999999987765444


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......++..|.+|+....      +     |++  +|+. ...|+.... ..+.+.....+.. ...+..++..+.++
T Consensus       165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~l  242 (279)
T 1qpc_A          165 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT-NPEVIQNLERGYR-MVRPDNCPEELYQL  242 (279)
T ss_dssp             ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC-HHHHHHHHHTTCC-CCCCTTCCHHHHHH
T ss_pred             ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccC-HHHHHHHHhcccC-CCCcccccHHHHHH
Confidence            43444556778888776432      2     888  8883 554543322 2222222111111 11223567789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +.+||+.||++|| +.++++.|+++...
T Consensus       243 i~~~l~~~p~~Rps~~~l~~~l~~~~~~  270 (279)
T 1qpc_A          243 MRLCWKERPEDRPTFDYLRSVLEDFFTA  270 (279)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHhccChhhCCCHHHHHHHHHHHHHh
Confidence            9999999999999 99999999987643

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.2e-36  Score=257.92  Aligned_cols=226  Identities=14%  Similarity=0.183  Sum_probs=180.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|....       +++.||+|.+.... .....+.+|+.+++.++||||+++++++...+..++||||+++|
T Consensus        15 ~G~~g~Vy~~~~~~-------~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~   86 (321)
T 1tki_A           15 RGEFGIVHRCVETS-------SKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGL   86 (321)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCC
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCCC
Confidence            89999999999875       89999999997553 34456889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC--CCceEEeecccccccCCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE--ENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~--~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|.+++.      .....+++..+..++.|++.||.|||   ..+++|+||||+|||++.  ++.+||+|||++......
T Consensus        87 ~L~~~l~------~~~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~  157 (321)
T 1tki_A           87 DIFERIN------TSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG  157 (321)
T ss_dssp             BHHHHHT------SSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT
T ss_pred             CHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC
Confidence            9999993      23457999999999999999999999   899999999999999997  789999999999877544


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCC--chHHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSG--NQQQLQAF  260 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l  260 (292)
                      ..  .....||+.|++||.....           |++  +|+....|+... .....+.....+....+.  ....+..+
T Consensus       158 ~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-~~~~~~~~i~~~~~~~~~~~~~~~s~~~  234 (321)
T 1tki_A          158 DN--FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE-TNQQIIENIMNAEYTFDEEAFKEISIEA  234 (321)
T ss_dssp             CE--EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS-SHHHHHHHHHHTCCCCCHHHHTTSCHHH
T ss_pred             Cc--cccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC-CHHHHHHHHHcCCCCCChhhhccCCHHH
Confidence            32  2345689999888865433           888  888333344332 223333333333333221  12456789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+++.+||+.||.+|| +.|+++.
T Consensus       235 ~~li~~~L~~dp~~Rpt~~e~l~h  258 (321)
T 1tki_A          235 MDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             HHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHcCCChhHCcCHHHHhcC
Confidence            9999999999999999 9999874

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.9e-36  Score=278.13  Aligned_cols=235  Identities=17%  Similarity=0.216  Sum_probs=179.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..     ..++..||||.++.. .....+.+.+|+.++++++||||+++++++.. +..++||||+.+
T Consensus       346 ~G~fG~Vy~~~~~~-----~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~  419 (613)
T 2ozo_A          346 CGNFGSVRQGVYRM-----RKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGG  419 (613)
T ss_dssp             ECSSSEEEEEEEEC-----SSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             cCCCcEEEEEEEec-----CCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCC
Confidence            89999999998742     014567999999764 33456789999999999999999999999976 568999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++.      .....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||+++....+.
T Consensus       420 g~L~~~l~------~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~  490 (613)
T 2ozo_A          420 GPLHKFLV------GKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADD  490 (613)
T ss_dssp             CBHHHHHT------TCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC---
T ss_pred             CcHHHHHh------hccCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCC
Confidence            99999993      23567999999999999999999999   8999999999999999999999999999998775433


Q ss_pred             ccc--hhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 THI--SELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~~--~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ...  .....++..|++||+...      +     |++  ||+. ...|+.... ..+.+.....+.+ ...+..+++.+
T Consensus       491 ~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~-~~~~~~~i~~~~~-~~~p~~~~~~l  568 (613)
T 2ozo_A          491 SYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK-GPEVMAFIEQGKR-MECPPECPPEL  568 (613)
T ss_dssp             -----------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-SHHHHHHHHTTCC-CCCCTTCCHHH
T ss_pred             ceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHcCCC-CCCCCcCCHHH
Confidence            221  222345678888876532      2     988  8883 555554332 2222222222222 22224678899


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+||.+||+.||++|| +.+|++.|+.+..
T Consensus       569 ~~li~~cl~~dP~~RPs~~~l~~~L~~~~~  598 (613)
T 2ozo_A          569 YALMSDCWIYKWEDRPDFLTVEQRMRACYY  598 (613)
T ss_dssp             HHHHHHTTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence            9999999999999999 9999999998753

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=5.4e-36  Score=258.42  Aligned_cols=227  Identities=19%  Similarity=0.232  Sum_probs=170.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCC-----------
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ-----------  105 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~-----------  105 (292)
                      +|+||.||+|.+..       +++.||||.++... ....+.+.+|+.++++++||||+++++++....           
T Consensus        16 ~G~~g~V~~a~~~~-------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~   88 (332)
T 3qd2_B           16 RGGFGVVFEAKNKV-------DDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEI   88 (332)
T ss_dssp             CC-CSEEEEEEETT-------TCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC-
T ss_pred             CCCCeEEEEEEEcC-------CCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhh
Confidence            89999999999876       89999999997543 335577999999999999999999999986543           


Q ss_pred             ----------------------------------------------cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHH
Q 044211          106 ----------------------------------------------IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT  139 (292)
Q Consensus       106 ----------------------------------------------~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~  139 (292)
                                                                    ..++||||+++|+|.+++.+..    .....++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~----~~~~~~~~  164 (332)
T 3qd2_B           89 WLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRC----SLEDREHG  164 (332)
T ss_dssp             -------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCC----SGGGSCHH
T ss_pred             hhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhccc----CccchhhH
Confidence                                                          2789999999999999995332    23445677


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc-----------cchhhhhcccc
Q 044211          140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET-----------HISELLSGLRA  208 (292)
Q Consensus       140 ~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~-----------~~~~~~~g~~~  208 (292)
                      .++.++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||++........           .......||+.
T Consensus       165 ~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  241 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL  241 (332)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred             HHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence            78999999999999999   89999999999999999999999999999987765421           11233568999


Q ss_pred             cccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCC
Q 044211          209 FDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVD  274 (292)
Q Consensus       209 y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~  274 (292)
                      |++||.....           |++  +|+ |..+. .....   ..........+ ......++.+.+++.+||+.||++
T Consensus       242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~  316 (332)
T 3qd2_B          242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQ-MERVR---IITDVRNLKFP-LLFTQKYPQEHMMVQDMLSPSPTE  316 (332)
T ss_dssp             GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCH-HHHHH---HHHHHHTTCCC-HHHHHHCHHHHHHHHHHHCSSGGG
T ss_pred             ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCCh-hHHHH---HHHHhhccCCC-cccccCChhHHHHHHHHccCCCCc
Confidence            9888764332           888  888 54322 11111   11111111111 111355678899999999999999


Q ss_pred             CC-HHHHHHH
Q 044211          275 RP-MVDVAKK  283 (292)
Q Consensus       275 RP-~~el~~~  283 (292)
                      || +.|+++.
T Consensus       317 Rps~~~~l~~  326 (332)
T 3qd2_B          317 RPEATDIIEN  326 (332)
T ss_dssp             SCCHHHHHHS
T ss_pred             CCCHHHHhhc
Confidence            99 9999863

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.2e-36  Score=265.33  Aligned_cols=238  Identities=15%  Similarity=0.239  Sum_probs=172.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeec-CCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE-TQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..    ....+..||+|.++.. .....+.+.+|+.++++++||||+++++++.. .+..++||||++
T Consensus        99 ~G~fg~Vy~~~~~~----~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~  174 (373)
T 3c1x_A           99 RGHFGCVYHGTLLD----NDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMK  174 (373)
T ss_dssp             CCSSSEEEEEEEEE----TTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECCT
T ss_pred             eCCCeEEEEEEEEC----CCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECCC
Confidence            99999999998741    0002346899998754 33456789999999999999999999998754 557899999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.++++      .....+++..++.++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++......
T Consensus       175 ~g~L~~~l~------~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~  245 (373)
T 3c1x_A          175 HGDLRNFIR------NETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  245 (373)
T ss_dssp             TCBHHHHHH------CTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred             CCCHHHHHh------hcccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeecccccccccc
Confidence            999999994      23456889999999999999999999   899999999999999999999999999999876443


Q ss_pred             Ccc---chhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          196 ETH---ISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       196 ~~~---~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ...   ......++..|++||....      +     |++  ||+ +..+|+.... ..+.......+... ..+..++.
T Consensus       246 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~-~~~~~~~~~~~~~~-~~p~~~~~  323 (373)
T 3c1x_A          246 EFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN-TFDITVYLLQGRRL-LQPEYCPD  323 (373)
T ss_dssp             ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC-SSCHHHHHHTTCCC-CCCTTCCH
T ss_pred             ccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCC-HHHHHHHHHcCCCC-CCCCCCCH
Confidence            221   1233456778888875432      2     888  888 5555544332 22222222222222 22246678


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+.+++.+||+.||++|| +.++++.|+++..+
T Consensus       324 ~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~  356 (373)
T 3c1x_A          324 PLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  356 (373)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            899999999999999999 99999999998653

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=2.6e-36  Score=260.49  Aligned_cols=233  Identities=17%  Similarity=0.224  Sum_probs=173.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCe----EEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQER----PVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~----~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||+|.+..       +++    .||+|.+... .....+.+.+|+.++++++||||+++++++.... .++++|
T Consensus        25 ~G~~g~Vy~~~~~~-------~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~v~e   96 (327)
T 3poz_A           25 SGAFGTVYKGLWIP-------EGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQ   96 (327)
T ss_dssp             EETTEEEEEEEECC-----------CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEEEEE
T ss_pred             eCCCeEEEEEEEcC-------CCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEEEEE
Confidence            89999999999753       444    4688887543 3345578999999999999999999999998754 789999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+.+|+|.+++..      ....+++..++.++.|++.||.|||   ..+++||||||+|||++.++.+||+|||+++..
T Consensus        97 ~~~~g~L~~~l~~------~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~  167 (327)
T 3poz_A           97 LMPFGCLLDYVRE------HKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  167 (327)
T ss_dssp             CCTTCBHHHHHHH------STTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHH
T ss_pred             ecCCCcHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeEc
Confidence            9999999999943      2456899999999999999999999   899999999999999999999999999999877


Q ss_pred             CCCCcc-chhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          193 PEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       193 ~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ...... ......+|..|++|+...      ++     |++  ||+. ...|+... ........ +......+.+..++
T Consensus       168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~-~~~~~~~~-~~~~~~~~~~~~~~  245 (327)
T 3poz_A          168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI-PASEISSI-LEKGERLPQPPICT  245 (327)
T ss_dssp             TTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-CGGGHHHH-HHTTCCCCCCTTBC
T ss_pred             cCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCC-CHHHHHHH-HHcCCCCCCCccCC
Confidence            544322 223345677898887532      22     888  8773 55554332 22222221 11111222224677


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      ..+.+++.+||+.||++|| +.++++.|+.+.+
T Consensus       246 ~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~  278 (327)
T 3poz_A          246 IDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             HHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            7899999999999999999 9999999998764

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=6e-36  Score=254.68  Aligned_cols=238  Identities=16%  Similarity=0.237  Sum_probs=179.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeee-cCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCL-ETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~-~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..    ...+...||+|.++... ....+.+.+|+.++++++||||+++++++. ..+..++||||++
T Consensus        35 ~G~~g~Vy~~~~~~----~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~  110 (298)
T 3f66_A           35 RGHFGCVYHGTLLD----NDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMK  110 (298)
T ss_dssp             EETTEEEEEEEEC---------CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEECCT
T ss_pred             ecCCceEEEEEEec----CCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeCCC
Confidence            89999999998742    00023468999987643 344577999999999999999999999865 4567899999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.++++      .....+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++......
T Consensus       111 ~~~L~~~l~------~~~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~  181 (298)
T 3f66_A          111 HGDLRNFIR------NETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  181 (298)
T ss_dssp             TCBHHHHHH------CTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCG
T ss_pred             CCCHHHHHH------hcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECccccccccccc
Confidence            999999994      23566899999999999999999999   899999999999999999999999999999876543


Q ss_pred             Ccc---chhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          196 ETH---ISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       196 ~~~---~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ...   ......+++.|.+|+....      +     |++  +|+ |..+++... ...........+.... .+..++.
T Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~  259 (298)
T 3f66_A          182 EYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-NTFDITVYLLQGRRLL-QPEYCPD  259 (298)
T ss_dssp             GGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTS-CTTTHHHHHHTTCCCC-CCTTCCH
T ss_pred             chhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccC-CHHHHHHHHhcCCCCC-CCccCCH
Confidence            221   1233456778877775432      2     888  888 555444332 2222222222222221 1235677


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+.+++.+||+.||++|| +.++++.|+++...
T Consensus       260 ~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~  292 (298)
T 3f66_A          260 PLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  292 (298)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            899999999999999999 99999999998754

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.8e-36  Score=254.68  Aligned_cols=229  Identities=21%  Similarity=0.282  Sum_probs=169.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+         .++.||+|.+...  ...+.+.+|+.++++++||||+++++++.  +..++||||+++|
T Consensus        18 ~G~~g~V~~~~~---------~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~~~   84 (307)
T 2eva_A           18 RGAFGVVCKAKW---------RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAEGG   84 (307)
T ss_dssp             CCSSSEEEEEEE---------TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCTTC
T ss_pred             cCCCceEEEEEE---------CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCCCC
Confidence            899999999998         7789999998754  34567999999999999999999999887  4589999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc-eEEeecccccccCCCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV-AKLFDFSFSISIPEGE  196 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~-~kl~Dfg~a~~~~~~~  196 (292)
                      +|.+++...    .....+++..++.++.|++.||.|||.....+++|+||||+||+++.++. +||+|||++.......
T Consensus        85 ~L~~~l~~~----~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~  160 (307)
T 2eva_A           85 SLYNVLHGA----EPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHM  160 (307)
T ss_dssp             BHHHHHHCS----SSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC--------
T ss_pred             CHHHHHhcc----CCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccccc
Confidence            999999422    12235788999999999999999999321189999999999999998876 7999999997654322


Q ss_pred             ccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc-chhhhcccccccCCCCCCchHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED-RLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                          ....|+..|++||.....           |++  +|+ |+. |+.... ...........+..+ ..+..++..+.
T Consensus       161 ----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~-p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  234 (307)
T 2eva_A          161 ----TNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRK-PFDEIGGPAFRIMWAVHNGTRP-PLIKNLPKPIE  234 (307)
T ss_dssp             --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCC-TTTTTCSSHHHHHHHHHTTCCC-CCBTTCCHHHH
T ss_pred             ----ccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCC-CchhhCccHHHHHHHHhcCCCC-CcccccCHHHH
Confidence                234588999888765432           888  888 544 333211 111111111111111 12235677899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          262 HLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      +++.+||+.||++|| +.++++.|+.+.+
T Consensus       235 ~li~~~l~~dp~~Rps~~ell~~L~~~~~  263 (307)
T 2eva_A          235 SLMTRCWSKDPSQRPSMEEIVKIMTHLMR  263 (307)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHHHHHGG
T ss_pred             HHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence            999999999999999 9999999999875

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=5.3e-36  Score=259.33  Aligned_cols=217  Identities=16%  Similarity=0.209  Sum_probs=174.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.++..   .......+.+|..+++.++||||+++++++...+..++||||+
T Consensus        15 ~G~fg~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~   87 (337)
T 1o6l_A           15 KGTFGKVILVREKA-------TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYA   87 (337)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCC
Confidence            89999999999875       8999999998643   2234567889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.+       ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++....
T Consensus        88 ~gg~L~~~l~~-------~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~  157 (337)
T 1o6l_A           88 NGGELFFHLSR-------ERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS  157 (337)
T ss_dssp             TTCBHHHHHHH-------HSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred             CCCcHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhccc
Confidence            99999999943       346899999999999999999999   89999999999999999999999999999986433


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ... ......||+.|++||+....           |++  ||+ |.. |+... ................+.  ..++.+
T Consensus       158 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~-Pf~~~-~~~~~~~~i~~~~~~~p~--~~s~~~  232 (337)
T 1o6l_A          158 DGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL-PFYNQ-DHERLFELILMEEIRFPR--TLSPEA  232 (337)
T ss_dssp             TTC-CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSC-SSCCS-SHHHHHHHHHHCCCCCCT--TSCHHH
T ss_pred             CCC-cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCC-CCCCC-CHHHHHHHHHcCCCCCCC--CCCHHH
Confidence            222 23456799999999876433           888  888 544 44322 223333333333333332  567789


Q ss_pred             HHHHhHhcCCCCCCCC
Q 044211          261 AHLIFECVNESPVDRP  276 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP  276 (292)
                      .+++.+||+.||++||
T Consensus       233 ~~li~~lL~~dP~~R~  248 (337)
T 1o6l_A          233 KSLLAGLLKKDPKQRL  248 (337)
T ss_dssp             HHHHHHHTCSSTTTST
T ss_pred             HHHHHHHhhcCHHHhc
Confidence            9999999999999997

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-36  Score=261.50  Aligned_cols=222  Identities=18%  Similarity=0.227  Sum_probs=178.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.+...   .......+.+|+.+++.++||||+++++++...+..++||||+
T Consensus        19 ~G~~g~V~~a~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~   91 (336)
T 3h4j_B           19 EGSFGKVKLATHYK-------TQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA   91 (336)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECC
Confidence            89999999999865       8999999998642   1222357889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                       +|+|.+++..       ...+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++.....
T Consensus        92 -~g~l~~~l~~-------~~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~  160 (336)
T 3h4j_B           92 -GGELFDYIVE-------KKRMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTD  160 (336)
T ss_dssp             -CEEHHHHHHH-------HCSCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTT
T ss_pred             -CCcHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccC
Confidence             5799998842       346999999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ...  .....||+.|++||.....            |++  +|+ |+. |+. .............+....+  ...++.
T Consensus       161 ~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~-Pf~-~~~~~~~~~~i~~~~~~~p--~~~s~~  234 (336)
T 3h4j_B          161 GNF--LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRL-PFD-DEFIPNLFKKVNSCVYVMP--DFLSPG  234 (336)
T ss_dssp             SBT--TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSC-SSB-CSSSTTCBCCCCSSCCCCC--TTSCHH
T ss_pred             Ccc--cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCC-CCC-CccHHHHHHHHHcCCCCCc--ccCCHH
Confidence            332  2445789999998876432            888  888 543 433 2233333333333333332  356778


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+|+.+||+.||.+|| +.|+++.
T Consensus       235 ~~~li~~~L~~dP~~Rpt~~eil~h  259 (336)
T 3h4j_B          235 AQSLIRRMIVADPMQRITIQEIRRD  259 (336)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHhC
Confidence            99999999999999999 9998764

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=266.42  Aligned_cols=227  Identities=17%  Similarity=0.177  Sum_probs=178.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|....       +++.||+|.+.....  ...+.+.+|+.+++.++||||+++++++...+..++||||+.
T Consensus        21 ~G~fg~V~~~~~~~-------~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E~~~   93 (444)
T 3soa_A           21 KGAFSVVRRCVKVL-------AGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVT   93 (444)
T ss_dssp             EC--CEEEEEEETT-------TTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEECCCB
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEEeCC
Confidence            89999999998865       899999999976532  334578999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec---CCCceEEeeccccccc
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN---EENVAKLFDFSFSISI  192 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~---~~~~~kl~Dfg~a~~~  192 (292)
                      +|+|.+.+.       ....+++..+..++.|++.||.|||   +.+|+||||||+|||++   .++.+||+|||++...
T Consensus        94 gg~L~~~i~-------~~~~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~  163 (444)
T 3soa_A           94 GGELFEDIV-------AREYYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEV  163 (444)
T ss_dssp             CCBHHHHHH-------HCSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCC
T ss_pred             CCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEEe
Confidence            999999993       3456999999999999999999999   89999999999999998   4578999999999877


Q ss_pred             CCCCccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCC--CchHHH
Q 044211          193 PEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCS--GNQQQL  257 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  257 (292)
                      ..... ......||+.|++||.....           |++  +|+....|+... .....+.....+....+  .....+
T Consensus       164 ~~~~~-~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~-~~~~~~~~i~~~~~~~~~~~~~~~s  241 (444)
T 3soa_A          164 EGEQQ-AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE-DQHRLYQQIKAGAYDFPSPEWDTVT  241 (444)
T ss_dssp             CTTCC-BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS-SHHHHHHHHHHTCCCCCTTTTTTSC
T ss_pred             cCCCc-eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc-cHHHHHHHHHhCCCCCCccccccCC
Confidence            54332 22346799999988865442           888  888333344332 22233333333322222  123567


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+.+|+.+||+.||++|| +.|+++.
T Consensus       242 ~~~~~li~~~L~~dP~~Rpta~e~L~h  268 (444)
T 3soa_A          242 PEAKDLINKMLTINPSKRITAAEALKH  268 (444)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            8899999999999999999 9999863

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.2e-36  Score=257.96  Aligned_cols=240  Identities=21%  Similarity=0.224  Sum_probs=181.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCC--cceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ--IPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~--~~~lv~e~~~  115 (292)
                      +|+||.||++.+..   ....+++.||+|.+........+.+.+|+.++++++||||+++++++...+  ..++|+||++
T Consensus        51 ~G~~g~V~~~~~~~---~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~  127 (326)
T 2w1i_A           51 KGNFGSVEMCRYDP---LQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLP  127 (326)
T ss_dssp             CCSSEEEEEEEECT---TSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECCCT
T ss_pred             cCCCeEEEEEEecc---ccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEECCC
Confidence            89999999998420   011278999999998876666778999999999999999999999987644  6899999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++...      ...+++..++.++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++......
T Consensus       128 ~~~L~~~l~~~------~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~  198 (326)
T 2w1i_A          128 YGSLRDYLQKH------KERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQD  198 (326)
T ss_dssp             TCBHHHHHHHS------TTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSS
T ss_pred             CCCHHHHHHhc------ccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcchhhcccc
Confidence            99999999432      346899999999999999999999   899999999999999999999999999999877544


Q ss_pred             Ccc--chhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccch--------------hhhcccccc
Q 044211          196 ETH--ISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRL--------------NEIIDPLIM  245 (292)
Q Consensus       196 ~~~--~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~--------------~~~~~~~~~  245 (292)
                      ...  ......++..|.+||....      +     |++  +|+ |..+........              ..+. ..+.
T Consensus       199 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  277 (326)
T 2w1i_A          199 KEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI-ELLK  277 (326)
T ss_dssp             CSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHH-HHHH
T ss_pred             ccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHH-HHhh
Confidence            321  1223446667887775432      2     888  888 644221110000              0011 1111


Q ss_pred             cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          246 GDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       246 ~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .....+.+..++..+.+++.+||+.||++|| +.++++.|++++++
T Consensus       278 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~  323 (326)
T 2w1i_A          278 NNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQ  323 (326)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            1111122246778999999999999999999 99999999998764

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=9.6e-36  Score=257.62  Aligned_cols=247  Identities=16%  Similarity=0.214  Sum_probs=183.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+....+....++..||+|.++... ......+.+|+.+++++ +||||+++++++...+..++||||++
T Consensus        45 ~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~  124 (334)
T 2pvf_A           45 EGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYAS  124 (334)
T ss_dssp             ECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCEEEEECCT
T ss_pred             ecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCceEEEEECCC
Confidence            89999999998742222222367889999997653 33456789999999999 89999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          116 CGSLADRIRIHHTPQ---------PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      +|+|.+++.......         .....+++..++.++.|++.||.|||   ..+++|+||||+||+++.++.+||+||
T Consensus       125 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Df  201 (334)
T 2pvf_A          125 KGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADF  201 (334)
T ss_dssp             TCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCC
T ss_pred             CCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEEcCCCCEEEccc
Confidence            999999996432110         11245899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCcc-chhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCC
Q 044211          187 SFSISIPEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       187 g~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      |++......... ......+++.|++|+...      ++     |++  +|+. ...|+... ...+.......+... .
T Consensus       202 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~-~~~~~~~~~~~~~~~-~  279 (334)
T 2pvf_A          202 GLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEELFKLLKEGHRM-D  279 (334)
T ss_dssp             TTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC-CHHHHHHHHHHTCCC-C
T ss_pred             cccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcC-CHHHHHHHHhcCCCC-C
Confidence            999877543322 123345677888887542      22     888  7773 55444332 222222222222211 1


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+..++..+.+++.+||+.||++|| +.++++.|+.+..
T Consensus       280 ~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~  318 (334)
T 2pvf_A          280 KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT  318 (334)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            1236677899999999999999999 9999999998764

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=7.2e-36  Score=257.64  Aligned_cols=246  Identities=19%  Similarity=0.206  Sum_probs=181.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..  .....+++.||+|.+... .......+.+|+.++++++||||+++++++......++||||+++
T Consensus        40 ~G~~g~Vy~~~~~~--~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~  117 (327)
T 2yfx_A           40 HGAFGEVYEGQVSG--MPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMELMAG  117 (327)
T ss_dssp             --CSSCEEEEEC----------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             CCCCeeEEEEEEcC--CCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEEecCCC
Confidence            89999999998521  000116778999999754 334456789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC---CCceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE---ENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~---~~~~kl~Dfg~a~~~~  193 (292)
                      |+|.+++............+++..++.++.|++.||.|||   ..+++|+||||+||+++.   +..+||+|||++....
T Consensus       118 ~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~  194 (327)
T 2yfx_A          118 GDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIY  194 (327)
T ss_dssp             EEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHH
T ss_pred             CcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEECccccccccc
Confidence            9999999765543344567999999999999999999999   899999999999999994   4569999999998664


Q ss_pred             CCCc-cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          194 EGET-HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       194 ~~~~-~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      .... .......|+..|++|+....      +     |++  +|+ +...|+... ...........+.... .+..++.
T Consensus       195 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~-~~~~~~~~~~~~~~~~-~~~~~~~  272 (327)
T 2yfx_A          195 RASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK-SNQEVLEFVTSGGRMD-PPKNCPG  272 (327)
T ss_dssp             C------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-CHHHHHHHHHTTCCCC-CCTTCCH
T ss_pred             cccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCc-CHHHHHHHHhcCCCCC-CCCCCCH
Confidence            3322 22234567888988875432      2     888  887 354444332 2222222222222211 1236677


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+.+++.+||+.||.+|| +.++++.|+.+...
T Consensus       273 ~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~  305 (327)
T 2yfx_A          273 PVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  305 (327)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence            899999999999999999 99999999987653

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.7e-36  Score=258.28  Aligned_cols=225  Identities=16%  Similarity=0.184  Sum_probs=176.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc------chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP------RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||+|....       +++.||+|.++....      ...+.+.+|+.++++++||||+++++++......++||
T Consensus        21 ~G~~g~V~~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   93 (326)
T 2y0a_A           21 SGQFAVVKKCREKS-------TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILIL   93 (326)
T ss_dssp             CCSSEEEEEEEETT-------TCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCCCeEEEEEEECC-------CCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            89999999999875       899999999865422      13567999999999999999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC----ceEEeecc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN----VAKLFDFS  187 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~----~~kl~Dfg  187 (292)
                      ||+++|+|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||||+|||++.++    .+||+|||
T Consensus        94 e~~~~~~L~~~l~-------~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg  163 (326)
T 2y0a_A           94 ELVAGGELFDFLA-------EKESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFG  163 (326)
T ss_dssp             ECCCSCBHHHHHT-------TSSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred             EcCCCCCHHHHHH-------hcCCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence            9999999999992       4567999999999999999999999   89999999999999999887    79999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC-
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG-  252 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  252 (292)
                      ++........  .....||+.|++||.....           |++  +|+ |.. |+.... ....+..........+. 
T Consensus       164 ~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~-pf~~~~-~~~~~~~~~~~~~~~~~~  239 (326)
T 2y0a_A          164 LAHKIDFGNE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGAS-PFLGDT-KQETLANVSAVNYEFEDE  239 (326)
T ss_dssp             TCEECCTTSC--CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCC-SSCCSS-HHHHHHHHHHTCCCCCHH
T ss_pred             CCeECCCCCc--cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcC-CCCCCC-HHHHHHHHHhcCCCcCcc
Confidence            9987754322  2345689999888765432           888  888 544 433221 11222211111111111 


Q ss_pred             -chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          253 -NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       253 -~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                       ....+..+.+|+.+||+.||++|| +.++++.
T Consensus       240 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  272 (326)
T 2y0a_A          240 YFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  272 (326)
T ss_dssp             HHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             ccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence             123466899999999999999999 9999863

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.9e-35  Score=251.78  Aligned_cols=230  Identities=18%  Similarity=0.274  Sum_probs=173.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHh--cCCCCccceeeeeec----CCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQ--MIHRCIFKLIGCCLE----TQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~~~----~~~~~lv~  111 (292)
                      +|+||.||+|.+         +++.||+|.+...   ....+..|.+++..  ++||||+++++++..    ....++||
T Consensus        18 ~G~~g~V~~~~~---------~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~   85 (301)
T 3q4u_A           18 KGRYGEVWRGSW---------QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLIT   85 (301)
T ss_dssp             ECSSEEEEEEEE---------TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             cCCCcEEEEEEE---------CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEeh
Confidence            899999999998         8899999998654   34556677777766  799999999998764    34578999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCcccCCCCCCceEecCCCceEEeec
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF-----PRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~-----~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      ||+++|+|.+++        ....+++..++.++.|++.||.|||+..     ..+++||||||+|||++.++.+||+||
T Consensus        86 e~~~~g~L~~~l--------~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Df  157 (301)
T 3q4u_A           86 HYHEMGSLYDYL--------QLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADL  157 (301)
T ss_dssp             CCCTTCBHHHHH--------TTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCC
T ss_pred             hhccCCCHHHHH--------hhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeC
Confidence            999999999999        2457999999999999999999999321     468999999999999999999999999


Q ss_pred             ccccccCCCCccc---hhhhhcccccccccccCC------------C-----CeE--EEc-cc---------hhhhhhcc
Q 044211          187 SFSISIPEGETHI---SELLSGLRAFDLARLNED------------D-----GYV--VLL-DH---------IKKYFEED  234 (292)
Q Consensus       187 g~a~~~~~~~~~~---~~~~~g~~~y~~~~~~~~------------~-----Gvi--el~-~~---------~~~~~~~~  234 (292)
                      |++..........   .....||+.|++||....            +     |++  ||+ |.         ..|+....
T Consensus       158 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~  237 (301)
T 3q4u_A          158 GLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVV  237 (301)
T ss_dssp             TTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred             CCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccC
Confidence            9998765433221   233478999988876432            2     888  888 52         23333211


Q ss_pred             c----hhhhccccc-ccCCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          235 R----LNEIIDPLI-MGDRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       235 ~----~~~~~~~~~-~~~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      .    ......... ....+..+    ...++..+.+|+.+||+.||++|| +.++++.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          238 PNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             CSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCCcchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            1    111111011 11111111    135788999999999999999999 99999999986

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=7.8e-36  Score=260.93  Aligned_cols=226  Identities=18%  Similarity=0.233  Sum_probs=179.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +++.||+|.++...  ....+.+.+|+.++++++||||+++++++...+..++||||+.
T Consensus        39 ~G~~g~V~~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e~~~  111 (362)
T 2bdw_A           39 KGAFSVVRRCVHKT-------TGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVT  111 (362)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCC
Confidence            89999999999875       89999999997542  3345678999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC---CceEEeeccccccc
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE---NVAKLFDFSFSISI  192 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~---~~~kl~Dfg~a~~~  192 (292)
                      +|+|.+++       .....+++..+..++.|++.||.|||   ..+|+|+||||+|||++.+   +.+||+|||++...
T Consensus       112 gg~L~~~l-------~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~  181 (362)
T 2bdw_A          112 GGELFEDI-------VAREFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV  181 (362)
T ss_dssp             SCBHHHHH-------TTCSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCC
T ss_pred             CCCHHHHH-------HHcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEe
Confidence            99999999       24567999999999999999999999   8999999999999999864   45999999999877


Q ss_pred             CCCCccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCC--CchHHH
Q 044211          193 PEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCS--GNQQQL  257 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  257 (292)
                      .....  .....||+.|++||+....           |++  +|+....|+... .....+.....+....+  .....+
T Consensus       182 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~-~~~~~~~~i~~~~~~~~~~~~~~~~  258 (362)
T 2bdw_A          182 NDSEA--WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE-DQHRLYAQIKAGAYDYPSPEWDTVT  258 (362)
T ss_dssp             TTCCS--CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS-SHHHHHHHHHHTCCCCCTTGGGGSC
T ss_pred             cCCcc--cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHhCCCCCCcccccCCC
Confidence            54322  2346789999888865432           888  888333344332 22222222222322222  223567


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+.+|+.+||+.||++|| +.++++.
T Consensus       259 ~~~~~li~~~L~~dP~~R~t~~e~l~h  285 (362)
T 2bdw_A          259 PEAKSLIDSMLTVNPKKRITADQALKV  285 (362)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            8899999999999999999 9998764

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=8.8e-36  Score=268.64  Aligned_cols=223  Identities=20%  Similarity=0.255  Sum_probs=180.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||||.++...   ......+.+|+.+++.++||||+++++++...+..++||||+
T Consensus        26 ~G~fg~V~~a~~~~-------~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~   98 (476)
T 2y94_A           26 VGTFGKVKVGKHEL-------TGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYV   98 (476)
T ss_dssp             CCSSSCEEEEEETT-------TCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            89999999999875       89999999986431   223467899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.....
T Consensus        99 ~gg~L~~~l~-------~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~  168 (476)
T 2y94_A           99 SGGELFDYIC-------KNGRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD  168 (476)
T ss_dssp             SSEEHHHHTT-------SSSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCT
T ss_pred             CCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccc
Confidence            9999999992       4567999999999999999999999   89999999999999999999999999999987754


Q ss_pred             CCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ...  .....||+.|++||.....            |++  +|+ |.. |+.. ............+....+  ...++.
T Consensus       169 ~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~-Pf~~-~~~~~~~~~i~~~~~~~p--~~~s~~  242 (476)
T 2y94_A          169 GEF--LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTL-PFDD-DHVPTLFKKICDGIFYTP--QYLNPS  242 (476)
T ss_dssp             TCC--BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSC-SSCC-SSSHHHHHHHHTTCCCCC--TTCCHH
T ss_pred             ccc--ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCC-CCCC-CCHHHHHHHHhcCCcCCC--ccCCHH
Confidence            332  2345789999888865322            888  888 543 4332 223333333333333222  245678


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+|+.+||+.||++|| +.++++.
T Consensus       243 ~~~Li~~~L~~dP~~Rpt~~eil~h  267 (476)
T 2y94_A          243 VISLLKHMLQVDPMKRATIKDIREH  267 (476)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             HHHHHHHHcCCCchhCcCHHHHHhC
Confidence            99999999999999999 9999863

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=7.1e-36  Score=252.19  Aligned_cols=236  Identities=20%  Similarity=0.238  Sum_probs=176.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..    ...++..||+|.+... .....+.+.+|+.++++++||||+++++++.. +..++||||+.+
T Consensus        22 ~G~~g~Vy~~~~~~----~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~   96 (281)
T 3cc6_A           22 EGFFGEVYEGVYTN----HKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWIIMELYPY   96 (281)
T ss_dssp             ECSSSEEEEEEEEC----TTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEEEEECCTT
T ss_pred             ecCCeeEEEeEEcC----CCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEEEEecCCC
Confidence            89999999998641    0013456999998765 33455779999999999999999999999864 457899999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++...      ...+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++.......
T Consensus        97 ~~L~~~l~~~------~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  167 (281)
T 3cc6_A           97 GELGHYLERN------KNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDED  167 (281)
T ss_dssp             CBHHHHHHHH------TTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC----
T ss_pred             CCHHHHHHhc------cccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCccccccc
Confidence            9999999533      346899999999999999999999   8999999999999999999999999999998776544


Q ss_pred             ccchhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      ........++..|.+|+....      +     |++  +|+. ...|+..... .........+.. .+.+..+++.+.+
T Consensus       168 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~l~~  245 (281)
T 3cc6_A          168 YYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN-KDVIGVLEKGDR-LPKPDLCPPVLYT  245 (281)
T ss_dssp             -----CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG-GGHHHHHHHTCC-CCCCTTCCHHHHH
T ss_pred             ccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh-HHHHHHHhcCCC-CCCCCCCCHHHHH
Confidence            333344556778888875432      1     888  7773 5545533221 111111111111 1112356778999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      ++.+||+.||++|| +.++++.|+++.+
T Consensus       246 li~~~l~~~p~~Rps~~ell~~L~~~~~  273 (281)
T 3cc6_A          246 LMTRCWDYDPSDRPRFTELVCSLSDVYQ  273 (281)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence            99999999999999 9999999998864

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-35  Score=257.20  Aligned_cols=239  Identities=18%  Similarity=0.246  Sum_probs=175.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+...   +...+..||+|.++... ......+.+|+.++++++||||+++++++...+..++||||+++
T Consensus        54 ~G~~g~Vy~~~~~~~---~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~  130 (333)
T 1mqb_A           54 AGEFGEVYKGMLKTS---SGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMEN  130 (333)
T ss_dssp             ECSSSEEEEEEEEC------CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred             cCCCeEEEEEEEecC---CCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeCCCC
Confidence            899999999987420   00023469999997653 23445789999999999999999999999998999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++..      ....+++..++.++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++.......
T Consensus       131 ~~L~~~l~~------~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~  201 (333)
T 1mqb_A          131 GALDKFLRE------KDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  201 (333)
T ss_dssp             EEHHHHHHH------TTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC--------
T ss_pred             CcHHHHHHh------CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhhcccc
Confidence            999999942      2456899999999999999999999   8999999999999999999999999999998765432


Q ss_pred             ccc--hhhhhcccccccccccCCC-----------CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 THI--SELLSGLRAFDLARLNEDD-----------GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~~--~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ...  .....++..|++|+.....           |++  ||+. ...|+.... ....+.....+.. .+.+..++..+
T Consensus       202 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l  279 (333)
T 1mqb_A          202 EATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS-NHEVMKAINDGFR-LPTPMDCPSAI  279 (333)
T ss_dssp             ---------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-HHHHHHHHHTTCC-CCCCTTCBHHH
T ss_pred             ccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCC-HHHHHHHHHCCCc-CCCcccCCHHH
Confidence            211  2223456778887764322           888  7773 555554322 2222222222211 12223677889


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+++.+||+.||++|| +.++++.|+++...
T Consensus       280 ~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~  310 (333)
T 1mqb_A          280 YQLMMQCWQQERARRPKFADIVSILDKLIRA  310 (333)
T ss_dssp             HHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            9999999999999999 99999999987643

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=7.4e-36  Score=261.00  Aligned_cols=225  Identities=17%  Similarity=0.180  Sum_probs=168.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++....       +++.||+|.+..... ....+.+|+.++++++||||+++++++......++||||+++|
T Consensus        30 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~  101 (361)
T 3uc3_A           30 SGNFGVARLMRDKL-------TKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGG  101 (361)
T ss_dssp             SSTTSSEEEEEETT-------TCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSC
T ss_pred             cCCCEEEEEEEECC-------CCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCCC
Confidence            99999999999876       899999999976432 3366889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc--eEEeecccccccCCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV--AKLFDFSFSISIPEG  195 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~--~kl~Dfg~a~~~~~~  195 (292)
                      +|.+++..       ...+++..+..++.|++.||.|||   ..+++||||||+|||++.++.  +||+|||++......
T Consensus       102 ~L~~~l~~-------~~~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~  171 (361)
T 3uc3_A          102 ELYERICN-------AGRFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH  171 (361)
T ss_dssp             BHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC------
T ss_pred             CHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCcccccccc
Confidence            99999942       345999999999999999999999   899999999999999987765  999999999754322


Q ss_pred             CccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhcc---chhhhcccccccCCCCCCchHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEED---RLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      .  ......||+.|++|+.....            |++  +|+ |+. |+....   .....+..........+.....+
T Consensus       172 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~-Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  248 (361)
T 3uc3_A          172 S--QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAY-PFEDPEEPRDYRKTIQRILSVKYSIPDDIRIS  248 (361)
T ss_dssp             -----------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSC-SCC----CCCHHHHHHHHHTTCCCCCTTSCCC
T ss_pred             C--CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCC-CCCCCccHHHHHHHHHHHhcCCCCCCCcCCCC
Confidence            2  22345789999888764322            888  888 544 333221   11222222222232222222456


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+.+|+.+||+.||++|| +.|+++.
T Consensus       249 ~~~~~li~~~L~~dP~~Rps~~ell~h  275 (361)
T 3uc3_A          249 PECCHLISRIFVADPATRISIPEIKTH  275 (361)
T ss_dssp             HHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHHhC
Confidence            7899999999999999999 9999875

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-35  Score=261.60  Aligned_cols=226  Identities=16%  Similarity=0.204  Sum_probs=179.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|....       +++.||+|.+..........+.+|+.+++.++||||+++++++......++||||+.+|
T Consensus        61 ~G~~g~Vy~~~~~~-------~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg  133 (387)
T 1kob_A           61 SGAFGVVHRCVEKA-------TGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGG  133 (387)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCC
T ss_pred             cCCCEEEEEEEECC-------CCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCC
Confidence            89999999999875       88999999998765555567899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC--CCceEEeecccccccCCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE--ENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~--~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|.+++.      .....+++..+..++.|++.||.|||   +.+++|+||||+|||++.  ++.+||+|||++......
T Consensus       134 ~L~~~l~------~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~  204 (387)
T 1kob_A          134 ELFDRIA------AEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD  204 (387)
T ss_dssp             BHHHHTT------CTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT
T ss_pred             cHHHHHH------hhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCCC
Confidence            9999992      23457999999999999999999999   899999999999999984  477999999999877544


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCC--CCCCchHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR--SCSGNQQQLQA  259 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  259 (292)
                      ..  .....||+.|++||+....           |++  +|+ |.. |+..... ...+........  +.......++.
T Consensus       205 ~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~-Pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~s~~  280 (387)
T 1kob_A          205 EI--VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLS-PFAGEDD-LETLQNVKRCDWEFDEDAFSSVSPE  280 (387)
T ss_dssp             SC--EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCC-SSCCSSH-HHHHHHHHHCCCCCCSSTTTTSCHH
T ss_pred             cc--eeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCC-CCCCCCH-HHHHHHHHhCCCCCCccccccCCHH
Confidence            32  2335689999888876533           888  888 544 4433221 112221111111  11111356778


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+++.+||+.||++|| +.++++.
T Consensus       281 ~~~li~~~L~~dP~~Rpt~~ell~h  305 (387)
T 1kob_A          281 AKDFIKNLLQKEPRKRLTVHDALEH  305 (387)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHHcCCChhHCcCHHHHhhC
Confidence            99999999999999999 9999864

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.9e-35  Score=253.74  Aligned_cols=231  Identities=17%  Similarity=0.239  Sum_probs=172.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc--CCCCccceeeeeecC----CcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM--IHRCIFKLIGCCLET----QIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l--~h~niv~~~~~~~~~----~~~~lv~  111 (292)
                      +|+||.||+|.+         +++.||+|.+....   ...+..|.+++..+  +||||+++++++...    ...++||
T Consensus        47 ~G~~g~V~~~~~---------~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~  114 (337)
T 3mdy_A           47 KGRYGEVWMGKW---------RGEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLIT  114 (337)
T ss_dssp             EETTEEEEEEEE---------TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEE
T ss_pred             cCCCeEEEEEEE---------CCceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEE
Confidence            999999999998         88999999986442   34455566666554  899999999999876    6789999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--------CcccCCCCCCceEecCCCceEE
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR--------PVIFRDFKLSNILFNEENVAKL  183 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~--------~i~H~dlk~~nili~~~~~~kl  183 (292)
                      ||+++|+|.++++        ...+++..++.++.|++.||.|||   ..        +++|+||||+|||++.++.+||
T Consensus       115 e~~~~g~L~~~l~--------~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl  183 (337)
T 3mdy_A          115 DYHENGSLYDYLK--------STTLDAKSMLKLAYSSVSGLCHLH---TEIFSTQGKPAIAHRDLKSKNILVKKNGTCCI  183 (337)
T ss_dssp             CCCTTCBHHHHHH--------HCCBCHHHHHHHHHHHHHHHHHHH---SCBCSTTCBCCEECSCCCGGGEEECTTSCEEE
T ss_pred             eccCCCcHHHHhh--------ccCCCHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCEEecccchHHEEECCCCCEEE
Confidence            9999999999993        235899999999999999999999   77        9999999999999999999999


Q ss_pred             eecccccccCCCCccc---hhhhhcccccccccccCC------------C-----CeE--EEc-cc---------hhhhh
Q 044211          184 FDFSFSISIPEGETHI---SELLSGLRAFDLARLNED------------D-----GYV--VLL-DH---------IKKYF  231 (292)
Q Consensus       184 ~Dfg~a~~~~~~~~~~---~~~~~g~~~y~~~~~~~~------------~-----Gvi--el~-~~---------~~~~~  231 (292)
                      +|||++..+.......   .....||+.|++||....            +     |++  ||+ |.         ..|+.
T Consensus       184 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~  263 (337)
T 3mdy_A          184 ADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYH  263 (337)
T ss_dssp             CCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT
T ss_pred             EeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHh
Confidence            9999998765433221   224578999988876432            2     888  888 52         12222


Q ss_pred             hccc-------hhhhcc-cccccCCCC-CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          232 EEDR-------LNEIID-PLIMGDRSC-SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       232 ~~~~-------~~~~~~-~~~~~~~~~-~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      ....       ...... .......+. .....++..+.+|+.+||+.||++|| +.++++.|+.+.++.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  333 (337)
T 3mdy_A          264 DLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ  333 (337)
T ss_dssp             TTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             hhcCCCCchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence            1100       011000 111111110 01137889999999999999999999 999999999998764

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.6e-35  Score=250.93  Aligned_cols=235  Identities=17%  Similarity=0.222  Sum_probs=181.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..     ..++..||+|.++... ....+.+.+|+.++++++||||+++++++ ..+..++||||+.+
T Consensus        20 ~G~~g~Vy~~~~~~-----~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~   93 (287)
T 1u59_A           20 CGNFGSVRQGVYRM-----RKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGG   93 (287)
T ss_dssp             CCTTEEEEEEEEC--------CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEEEECCTT
T ss_pred             ccCceeEEEeEecc-----CCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEEEEeCCC
Confidence            89999999998631     0157789999998753 34557799999999999999999999999 45668999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++.      .....+++..++.++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++.......
T Consensus        94 ~~L~~~l~------~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~  164 (287)
T 1u59_A           94 GPLHKFLV------GKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD  164 (287)
T ss_dssp             EEHHHHHT------TCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred             CCHHHHHH------hCCccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeeccCc
Confidence            99999993      34567999999999999999999999   8999999999999999999999999999998775433


Q ss_pred             ccc--hhhhhcccccccccccCCC-----------CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 THI--SELLSGLRAFDLARLNEDD-----------GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~~--~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ...  .....++..|++||.....           |++  +|+. ...|+.... ..........+..+ ..+..+++.+
T Consensus       165 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~l  242 (287)
T 1u59_A          165 SYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK-GPEVMAFIEQGKRM-ECPPECPPEL  242 (287)
T ss_dssp             CEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC-THHHHHHHHTTCCC-CCCTTCCHHH
T ss_pred             ceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC-HHHHHHHHhcCCcC-CCCCCcCHHH
Confidence            221  2234457888888765322           888  7774 555554322 22222222222221 1123677899


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+++.+||+.||++|| +.++++.|+++..
T Consensus       243 ~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  272 (287)
T 1u59_A          243 YALMSDCWIYKWEDRPDFLTVEQRMRACYY  272 (287)
T ss_dssp             HHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            9999999999999999 9999999998764

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=6e-36  Score=258.13  Aligned_cols=239  Identities=21%  Similarity=0.216  Sum_probs=181.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..   ....+++.||+|.+........+.+.+|+.++++++||||+++++++..  ....++||||++
T Consensus        33 ~G~~g~V~~~~~~~---~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~  109 (327)
T 3lxl_A           33 KGNFGSVELCRYDP---LGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLP  109 (327)
T ss_dssp             EETTEEEEEEEECT---TSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEECCT
T ss_pred             CCCCeEEEEEEecc---CCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEeecC
Confidence            89999999998420   0112789999999988766666789999999999999999999999874  456889999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++...      ...+++..++.++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++......
T Consensus       110 ~~~L~~~l~~~------~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~  180 (327)
T 3lxl_A          110 SGCLRDFLQRH------RARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLD  180 (327)
T ss_dssp             TCBHHHHHHHH------GGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTT
T ss_pred             CCCHHHHHHhc------ccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccceecccC
Confidence            99999999533      245899999999999999999999   899999999999999999999999999999877543


Q ss_pred             Ccc--chhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccch-------------hhhccccccc
Q 044211          196 ETH--ISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRL-------------NEIIDPLIMG  246 (292)
Q Consensus       196 ~~~--~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~-------------~~~~~~~~~~  246 (292)
                      ...  ......|+..|++|+....      +     |++  +|+ |..+........             ....+ .+..
T Consensus       181 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  259 (327)
T 3lxl_A          181 KDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLE-LLEE  259 (327)
T ss_dssp             CSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHH-HHHT
T ss_pred             CccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHH-Hhhc
Confidence            322  2234557777888875432      2     888  888 544221111100             11111 1111


Q ss_pred             CCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          247 DRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       247 ~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      ....+.+..+++.+.+|+.+||+.||++|| +.++++.|+.+..
T Consensus       260 ~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~  303 (327)
T 3lxl_A          260 GQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWS  303 (327)
T ss_dssp             TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC--
T ss_pred             ccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            122222246778999999999999999999 9999999998754

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=5.9e-36  Score=278.91  Aligned_cols=235  Identities=18%  Similarity=0.217  Sum_probs=178.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..     ...++.||||+++..  .....+.+.+|+.++++++||||+++++++.. +..++||||++
T Consensus       379 ~G~fG~Vy~~~~~~-----~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~  452 (635)
T 4fl3_A          379 SGNFGTVKKGYYQM-----KKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAE  452 (635)
T ss_dssp             ECSSEEEEEEEEEC-----SSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred             cCCCEEEEEEEEcC-----CCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccC
Confidence            89999999996531     015688999999753  23345789999999999999999999999964 55889999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++.       ....+++..++.++.||+.||.|||   ..+|+||||||+|||++.++.+||+|||+++.+..+
T Consensus       453 ~g~L~~~l~-------~~~~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~  522 (635)
T 4fl3_A          453 LGPLNKYLQ-------QNRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRAD  522 (635)
T ss_dssp             TEEHHHHHH-------HCTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-
T ss_pred             CCCHHHHHh-------hCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccC
Confidence            999999993       3456899999999999999999999   899999999999999999999999999999877544


Q ss_pred             Cc--cchhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          196 ET--HISELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       196 ~~--~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ..  .......++..|++||+...      +     |++  ||+. ...|+.... ..+.......+.. ...+..++..
T Consensus       523 ~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~-~~~~~~~i~~~~~-~~~p~~~~~~  600 (635)
T 4fl3_A          523 ENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK-GSEVTAMLEKGER-MGCPAGCPRE  600 (635)
T ss_dssp             ------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC-HHHHHHHHHTTCC-CCCCTTCCHH
T ss_pred             ccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHHcCCC-CCCCCCCCHH
Confidence            32  22233456778988876532      2     888  8883 555554332 2222222222222 2222467889


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +.+||.+||+.||++|| +.+|++.|+++..+
T Consensus       601 l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~  632 (635)
T 4fl3_A          601 MYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  632 (635)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999 99999999987643

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.1e-35  Score=252.08  Aligned_cols=232  Identities=20%  Similarity=0.296  Sum_probs=167.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+.         + .||+|.++...  ....+.+.+|+.++++++||||+++++++ .....++||||+.
T Consensus        34 ~G~~g~Vy~~~~~---------~-~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e~~~  102 (289)
T 3og7_A           34 SGSFGTVYKGKWH---------G-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWCE  102 (289)
T ss_dssp             ECSSEEEEEEESS---------S-EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEECCC
T ss_pred             CCCCeEEEEEEEc---------C-ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEEecC
Confidence            8999999999884         2 49999987543  33456799999999999999999999965 4566899999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++.      .....+++..++.++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++......
T Consensus       103 ~~~L~~~l~------~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  173 (289)
T 3og7_A          103 GSSLYHHLH------ASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW  173 (289)
T ss_dssp             EEEHHHHHT------TC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC--------
T ss_pred             CCcHHHHHh------hccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceeccccccc
Confidence            999999993      34567999999999999999999999   899999999999999999999999999999765432


Q ss_pred             -CccchhhhhcccccccccccC---------CC-----CeE--EEccchhhhhhccchhhhcccccccCCCC---CCchH
Q 044211          196 -ETHISELLSGLRAFDLARLNE---------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSC---SGNQQ  255 (292)
Q Consensus       196 -~~~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  255 (292)
                       .........|++.|++|+...         ++     |++  +|+....|+...............+....   .....
T Consensus       174 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (289)
T 3og7_A          174 SGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSN  253 (289)
T ss_dssp             ----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTT
T ss_pred             cccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhcccc
Confidence             122234466899998888653         11     888  88833334433222222222111111111   11236


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      +++.+.+|+.+||+.||++|| +.++++.|+++.+
T Consensus       254 ~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          254 CPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence            678999999999999999999 9999999999864

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=2.8e-36  Score=260.04  Aligned_cols=233  Identities=18%  Similarity=0.260  Sum_probs=175.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeE----EEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERP----VSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~----vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||+|.+..       +++.    ||+|.+... .......+.+|+.++++++||||+++++++. .+..++|+|
T Consensus        23 ~G~~g~Vy~~~~~~-------~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e   94 (325)
T 3kex_A           23 SGVFGTVHKGVWIP-------EGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQLVTQ   94 (325)
T ss_dssp             CCSSCEEEEEEECC-------TTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEEEEE
T ss_pred             ecCCceEEEEEEcC-------CCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEEEEE
Confidence            89999999999864       5554    888887543 2233456778999999999999999999986 456889999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+.+|+|.+++.      .....+++..+..++.|++.||.|||   ..+++||||||+|||++.++.+||+|||++...
T Consensus        95 ~~~~~~L~~~l~------~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~  165 (325)
T 3kex_A           95 YLPLGSLLDHVR------QHRGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLL  165 (325)
T ss_dssp             CCTTCBSHHHHH------SSGGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGS
T ss_pred             eCCCCCHHHHHH------HccccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCccccc
Confidence            999999999994      22356888999999999999999999   899999999999999999999999999999887


Q ss_pred             CCCCcc-chhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          193 PEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       193 ~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ...... ......|+..|++|+...      ++     |++  +|+. ...|+... ......+....+.. ...+..++
T Consensus       166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~-~~~~~~~~~~~~~~-~~~~~~~~  243 (325)
T 3kex_A          166 PPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGL-RLAEVPDLLEKGER-LAQPQICT  243 (325)
T ss_dssp             CCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS-CTTHHHHHHHTTCB-CCCCTTBC
T ss_pred             CcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCcccc-CHHHHHHHHHcCCC-CCCCCcCc
Confidence            544322 234456777898877643      22     888  7774 55554432 22222221111111 11123456


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      ..+.+++.+||+.||.+|| +.++++.|+.+..
T Consensus       244 ~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~  276 (325)
T 3kex_A          244 IDVYMVMVKCWMIDENIRPTFKELANEFTRMAR  276 (325)
T ss_dssp             TTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            6899999999999999999 9999999998764

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=3.6e-36  Score=260.07  Aligned_cols=246  Identities=16%  Similarity=0.162  Sum_probs=182.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+...  +.......||+|.++.... .....+.+|+.+++++ +||||+++++++...+..++||||++
T Consensus        56 ~G~~g~Vy~~~~~~~--~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~  133 (333)
T 2i1m_A           56 AGAFGKVVEATAFGL--GKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCC  133 (333)
T ss_dssp             ECSSEEEEEEEETTC--SSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             cCCCcceEEEEecCC--CcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEEEecCC
Confidence            899999999997530  0011234799999976533 3456789999999999 89999999999999999999999999


Q ss_pred             CCChhHHhhhhCCC-------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccc
Q 044211          116 CGSLADRIRIHHTP-------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSF  188 (292)
Q Consensus       116 ~gsL~~~l~~~~~~-------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~  188 (292)
                      +|+|.+++......       ......+++..++.++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||+
T Consensus       134 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~  210 (333)
T 2i1m_A          134 YGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNGHVAKIGDFGL  210 (333)
T ss_dssp             TEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEEGGGEEEBCCCGG
T ss_pred             CCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEECCCCeEEECcccc
Confidence            99999999643210       011456899999999999999999999   89999999999999999999999999999


Q ss_pred             ccccCCCCc-cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCc
Q 044211          189 SISIPEGET-HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       189 a~~~~~~~~-~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (292)
                      +........ .......++..|++|+....      +     |++  +|+ +...|+...... ..+............+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~-~~~~~~~~~~~~~~~~  289 (333)
T 2i1m_A          211 ARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN-SKFYKLVKDGYQMAQP  289 (333)
T ss_dssp             GCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS-HHHHHHHHHTCCCCCC
T ss_pred             ccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh-HHHHHHHhcCCCCCCC
Confidence            986643322 22234556778988875422      2     888  888 455454432211 1111111212222222


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      ..++..+.+++.+||+.||.+|| +.++++.|+++..
T Consensus       290 ~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~  326 (333)
T 2i1m_A          290 AFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQ  326 (333)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHH
Confidence            35567899999999999999999 9999999998764

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=6e-36  Score=262.63  Aligned_cols=225  Identities=17%  Similarity=0.161  Sum_probs=174.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|....       +++.||+|.++.......+.+.+|+.++++++||||+++++++...+..++||||+++|
T Consensus        99 ~G~~g~Vy~a~~~~-------~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~  171 (373)
T 2x4f_A           99 GGRFGQVHKCEETA-------TGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG  171 (373)
T ss_dssp             -----CEEEEEETT-------TCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred             cCcCEEEEEEEEcC-------CCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence            89999999999865       89999999998765556678999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe--cCCCceEEeecccccccCCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF--NEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili--~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|.+++..      ....+++..+..++.|++.||.|||   +.+|+|+||||+|||+  +.++.+||+|||++......
T Consensus       172 ~L~~~l~~------~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~  242 (373)
T 2x4f_A          172 ELFDRIID------ESYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPR  242 (373)
T ss_dssp             EEHHHHHH------TGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTT
T ss_pred             cHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCc
Confidence            99998842      2346899999999999999999999   8999999999999999  56788999999999877543


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC--chHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG--NQQQLQA  259 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  259 (292)
                      ..  .....||+.|++||+....           |++  ||+ |.. |+.... ....+...+......+.  ....++.
T Consensus       243 ~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~-pf~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~  318 (373)
T 2x4f_A          243 EK--LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLS-PFLGDN-DAETLNNILACRWDLEDEEFQDISEE  318 (373)
T ss_dssp             CB--CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSC-TTCCSS-HHHHHHHHHHTCCCSCSGGGTTSCHH
T ss_pred             cc--cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCC-CCCCCC-HHHHHHHHHhccCCCChhhhccCCHH
Confidence            32  2335689999988865432           888  888 544 443322 12222222222211111  1245678


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+|+.+||+.||.+|| +.|+++
T Consensus       319 ~~~li~~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          319 AKEFISKLLIKEKSWRISASEALK  342 (373)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHcCCChhhCCCHHHHhc
Confidence            99999999999999999 999987

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=258.95  Aligned_cols=224  Identities=17%  Similarity=0.212  Sum_probs=162.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       +++.||+|.++...  ..+.+.+|+.++++++||||+++++++...+..++||||+++|
T Consensus        63 ~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~  133 (349)
T 2w4o_A           63 RGATSIVYRCKQKG-------TQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGG  133 (349)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             eCCCEEEEEEEECC-------CCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCCC
Confidence            89999999999975       78899999997653  2356789999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC---CCceEEeecccccccCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE---ENVAKLFDFSFSISIPE  194 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~---~~~~kl~Dfg~a~~~~~  194 (292)
                      +|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||||+|||++.   ++.+||+|||++.....
T Consensus       134 ~L~~~l~-------~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~  203 (349)
T 2w4o_A          134 ELFDRIV-------EKGYYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH  203 (349)
T ss_dssp             BHHHHHT-------TCSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC-------
T ss_pred             CHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccccCc
Confidence            9999992       4456899999999999999999999   899999999999999975   88999999999987644


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCC--CCchHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC--SGNQQQLQ  258 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  258 (292)
                      ..  ......||+.|++||+....           |++  ||+ |.. |+.........+..........  +.....+.
T Consensus       204 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~-pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  280 (349)
T 2w4o_A          204 QV--LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFE-PFYDERGDQFMFRRILNCEYYFISPWWDEVSL  280 (349)
T ss_dssp             -----------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC-TTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCH
T ss_pred             cc--ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCC-CCCCCcccHHHHHHHHhCCCccCCchhhhCCH
Confidence            32  22346789999888765432           888  888 544 4433222221222222222211  11135677


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+.+|+.+||+.||++|| +.++++.
T Consensus       281 ~~~~li~~~L~~dP~~Rpt~~e~l~h  306 (349)
T 2w4o_A          281 NAKDLVRKLIVLDPKKRLTTFQALQH  306 (349)
T ss_dssp             HHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHHHccCChhhCcCHHHHhcC
Confidence            899999999999999999 9998863

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=3.5e-35  Score=251.73  Aligned_cols=244  Identities=18%  Similarity=0.287  Sum_probs=173.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCc-----ceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQI-----PILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~-----~~lv  110 (292)
                      +|+||.||+|.+..    ...++..||+|.++..  .....+.+.+|+.++++++||||+++++++.....     .++|
T Consensus        44 ~G~~g~V~~~~~~~----~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~v  119 (313)
T 3brb_A           44 EGEFGSVMEGNLKQ----EDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVI  119 (313)
T ss_dssp             C-CCCCEEEEEEEC----TTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEEE
T ss_pred             ecCCeEEEEEEEec----cCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEEE
Confidence            89999999998742    0114458999998754  23345679999999999999999999999987543     4899


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      +||+++|+|.+++..... ......+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++.
T Consensus       120 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~  195 (313)
T 3brb_A          120 LPFMKYGDLHTYLLYSRL-ETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVCVADFGLSK  195 (313)
T ss_dssp             EECCTTCBHHHHHHHTTB-TTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEEECSCSCC-
T ss_pred             EecccCCCHHHHHHHhhh-hcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEEeecCcce
Confidence            999999999999843221 134567999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCcc-chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchH
Q 044211          191 SIPEGETH-ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQ  255 (292)
Q Consensus       191 ~~~~~~~~-~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (292)
                      ........ ......+++.|.+|+.....           |++  +|+ +...|+... ...........+..+ ..+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~-~~~~~~~~~~~~~~~-~~~~~  273 (313)
T 3brb_A          196 KIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGV-QNHEMYDYLLHGHRL-KQPED  273 (313)
T ss_dssp             ---------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-CGGGHHHHHHTTCCC-CCBTT
T ss_pred             ecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccC-CHHHHHHHHHcCCCC-CCCcc
Confidence            76543322 22334567788777764322           888  887 455444332 222222222222221 22246


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      +++.+.+++.+||+.||++|| +.++++.|+++.+..
T Consensus       274 ~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l  310 (313)
T 3brb_A          274 CLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL  310 (313)
T ss_dssp             CCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence            677899999999999999999 999999999987653

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=9.2e-36  Score=262.69  Aligned_cols=219  Identities=17%  Similarity=0.223  Sum_probs=172.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       +++.||+|+++..   .......+..|..++.++ +||||+++++++...+.+++||||
T Consensus        62 ~G~fG~V~~~~~~~-------~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~  134 (396)
T 4dc2_A           62 RGSYAKVLLVRLKK-------TDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEY  134 (396)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEc
Confidence            99999999999876       8899999998753   222335688899999887 899999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|..++.+       ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++...
T Consensus       135 ~~gg~L~~~l~~-------~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~  204 (396)
T 4dc2_A          135 VNGGDLMFHMQR-------QRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL  204 (396)
T ss_dssp             CTTCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred             CCCCcHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeecc
Confidence            999999999943       346999999999999999999999   8999999999999999999999999999998643


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc--------chhhhcccccccCCCCC
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED--------RLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  251 (292)
                      ... .......||+.|++||+....           |++  ||+ |+. |+....        ................+
T Consensus       205 ~~~-~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~-Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p  282 (396)
T 4dc2_A          205 RPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS-PFDIVGSSDNPDQNTEDYLFQVILEKQIRIP  282 (396)
T ss_dssp             CTT-CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC-SSTTTTC------CCHHHHHHHHHHCCCCCC
T ss_pred             cCC-CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCC-CCcccccccccchhhHHHHHHHHhccccCCC
Confidence            222 223456799999988876533           888  888 654 332110        11112222233333333


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-H
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~  277 (292)
                      .  ..++.+.+||.+||+.||.+|| +
T Consensus       283 ~--~~s~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          283 R--SLSVKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             T--TSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred             C--cCCHHHHHHHHHHhcCCHhHcCCC
Confidence            2  5677899999999999999999 7

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=1.5e-35  Score=251.42  Aligned_cols=233  Identities=18%  Similarity=0.231  Sum_probs=177.6

Q ss_pred             ccCCCeeEeeec--CCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFF--QNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~--~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+  ..       +++.||+|.++...  ....+.+.+|+.+++.++||||+++++++ ..+..++||||
T Consensus        27 ~G~~g~Vy~~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~   98 (291)
T 1xbb_A           27 SGNFGTVKKGYYQMKK-------VVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWMLVMEM   98 (291)
T ss_dssp             ECSSEEEEEEEEECSS-------SEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEEEEEC
T ss_pred             cccCeeeEeeeecCCC-------ceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEEEEEe
Confidence            899999999954  32       67899999997542  33456799999999999999999999999 55678999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++++|.+++.       ....+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++....
T Consensus        99 ~~~~~L~~~l~-------~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  168 (291)
T 1xbb_A           99 AELGPLNKYLQ-------QNRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALR  168 (291)
T ss_dssp             CTTEEHHHHHH-------HCTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred             CCCCCHHHHHH-------hCcCCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeec
Confidence            99999999994       2346899999999999999999999   8999999999999999999999999999998775


Q ss_pred             CCCccc--hhhhhcccccccccccCCC-----------CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          194 EGETHI--SELLSGLRAFDLARLNEDD-----------GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       194 ~~~~~~--~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ......  .....++..|.+|+.....           |++  +|+. ...|+.... ..........+..+ ..+..++
T Consensus       169 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~-~~~~~~~~~~~~~~-~~~~~~~  246 (291)
T 1xbb_A          169 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK-GSEVTAMLEKGERM-GCPAGCP  246 (291)
T ss_dssp             TTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC-HHHHHHHHHTTCCC-CCCTTCC
T ss_pred             cCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHcCCCC-CCCCCCC
Confidence            443222  2223456778887764322           888  7774 554543322 22222221222211 1123667


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +.+.+++.+||+.||++|| +.++++.|+++..+
T Consensus       247 ~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~  280 (291)
T 1xbb_A          247 REMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  280 (291)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            8999999999999999999 99999999997643

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=2.2e-35  Score=253.70  Aligned_cols=236  Identities=20%  Similarity=0.260  Sum_probs=177.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecC--CcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--~~~~lv~e~~  114 (292)
                      +|+||.||++.+..   ....+++.||+|.++... ......+.+|+.++++++||||+++++++...  ...++||||+
T Consensus        41 ~G~~g~V~~~~~~~---~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~  117 (318)
T 3lxp_A           41 EGHFGKVSLYCYDP---TNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYV  117 (318)
T ss_dssp             ECSSEEEEEEEECS---CC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEECCC
T ss_pred             CCCCeEEEEEEEcc---CCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEecc
Confidence            89999998876521   112278899999998653 33456789999999999999999999999874  5678999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.        ...+++..++.++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++.....
T Consensus       118 ~~~~L~~~l~--------~~~~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~  186 (318)
T 3lxp_A          118 PLGSLRDYLP--------RHSIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE  186 (318)
T ss_dssp             TTCBHHHHGG--------GSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCT
T ss_pred             cCCcHHHHHh--------hCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCccccccccc
Confidence            9999999993        334899999999999999999999   89999999999999999999999999999987754


Q ss_pred             CCcc--chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc-c-------------hhhhccccc
Q 044211          195 GETH--ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED-R-------------LNEIIDPLI  244 (292)
Q Consensus       195 ~~~~--~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~-~-------------~~~~~~~~~  244 (292)
                      ....  ......++..|.+|+.....           |++  +|+ |.. |+.... .             .... ...+
T Consensus       187 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  264 (318)
T 3lxp_A          187 GHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCD-SSQSPPTKFLELIGIAQGQMTVLRL-TELL  264 (318)
T ss_dssp             TCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTC-GGGSHHHHHHHHHCSCCHHHHHHHH-HHHH
T ss_pred             cccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCC-cccccchhhhhhhcccccchhHHHH-HHHH
Confidence            4321  23345567778887765432           888  888 543 221110 0             0001 1111


Q ss_pred             ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          245 MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      ......+.+..++..+.+|+.+||+.||++|| +.++++.|+.+.+
T Consensus       265 ~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~  310 (318)
T 3lxp_A          265 ERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHE  310 (318)
T ss_dssp             HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             hcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence            11112222246778999999999999999999 9999999998865

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=262.47  Aligned_cols=223  Identities=16%  Similarity=0.240  Sum_probs=174.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       +++.||+|.++..   .......+.+|..+++.+ +||||+++++++...+..++||||
T Consensus        33 ~G~fg~V~~~~~~~-------~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~  105 (353)
T 3txo_A           33 KGSFGKVMLARVKE-------TGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEF  105 (353)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             eCCCEEEEEEEEcC-------CCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeC
Confidence            99999999999875       8999999998653   223456688999999998 799999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++..       ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++...
T Consensus       106 ~~gg~L~~~l~~-------~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~  175 (353)
T 3txo_A          106 VNGGDLMFHIQK-------SRRFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI  175 (353)
T ss_dssp             CCSCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred             CCCCcHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence            999999999943       346999999999999999999999   8999999999999999999999999999998643


Q ss_pred             CCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ... .......||+.|++||+..      ++     |++  ||+ |.. |+.. ....+.+.....+....+.  ..++.
T Consensus       176 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~-Pf~~-~~~~~~~~~i~~~~~~~p~--~~~~~  250 (353)
T 3txo_A          176 CNG-VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHA-PFEA-ENEDDLFEAILNDEVVYPT--WLHED  250 (353)
T ss_dssp             C----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSC-SSCC-SSHHHHHHHHHHCCCCCCT--TSCHH
T ss_pred             cCC-ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCC-CCCC-CCHHHHHHHHHcCCCCCCC--CCCHH
Confidence            322 2234567999999888643      22     888  888 544 4332 2333444444444443332  46678


Q ss_pred             HHHHHhHhcCCCCCCCC-H------HHHHH
Q 044211          260 FAHLIFECVNESPVDRP-M------VDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~------~el~~  282 (292)
                      +.+++.+||+.||.+|| +      .++++
T Consensus       251 ~~~li~~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          251 ATGILKSFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             HHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             HHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence            99999999999999999 8      56654

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=5.5e-36  Score=257.67  Aligned_cols=245  Identities=18%  Similarity=0.209  Sum_probs=183.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+...  ....+++.||+|.+..... .....+.+|+.++++++||||+++++++...+..++||||+++
T Consensus        35 ~G~~g~Vy~~~~~~~--~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~  112 (322)
T 1p4o_A           35 QGSFGMVYEGVAKGV--VKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTR  112 (322)
T ss_dssp             ECSSSEEEEEEEEEE--ETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             cCCceEEEeeeecCc--cCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCccEEEEEeCCC
Confidence            899999999987410  0001478899999976432 3445789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCC---CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          117 GSLADRIRIHHT---PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~---~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      |+|.+++.....   .......+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++....
T Consensus       113 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~  189 (322)
T 1p4o_A          113 GDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIY  189 (322)
T ss_dssp             CBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGG
T ss_pred             CcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCCeEEECcCccccccc
Confidence            999999954321   0112356789999999999999999999   8999999999999999999999999999998664


Q ss_pred             CCCcc-chhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          194 EGETH-ISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       194 ~~~~~-~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ..... ......+++.|++|+....      +     |++  +|+ +...|+... ...........+.... .+..++.
T Consensus       190 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~-~~~~~~~~~~~~~~~~-~~~~~~~  267 (322)
T 1p4o_A          190 ETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL-SNEQVLRFVMEGGLLD-KPDNCPD  267 (322)
T ss_dssp             GGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-CHHHHHHHHHTTCCCC-CCTTCCH
T ss_pred             cccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC-CHHHHHHHHHcCCcCC-CCCCCCH
Confidence            43222 2233456788988875432      2     888  888 455554332 2222222222222211 1236677


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+.+++.+||+.||++|| +.++++.|+++..
T Consensus       268 ~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~  299 (322)
T 1p4o_A          268 MLFELMRMCWQYNPKMRPSFLEIISSIKEEME  299 (322)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence            899999999999999999 9999999987643

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=3.5e-35  Score=254.07  Aligned_cols=228  Identities=18%  Similarity=0.229  Sum_probs=169.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHH--HHhcCCCCccceeeeeec-----CCcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVY--ASQMIHRCIFKLIGCCLE-----TQIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~--l~~l~h~niv~~~~~~~~-----~~~~~lv  110 (292)
                      +|+||.||+|.+         +++.||+|.++...   ...+..|..+  +..++||||+++++.+..     ...+++|
T Consensus        23 ~G~~g~Vy~~~~---------~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv   90 (336)
T 3g2f_A           23 RGRYGAVYKGSL---------DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLV   90 (336)
T ss_dssp             ECSSEEEEEEEE---------TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEE
T ss_pred             cCCCeEEEEEEE---------CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEE
Confidence            899999999988         88999999997542   3344444444  455899999999986542     2356899


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC---------CcccCCCCCCceEecCCCce
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR---------PVIFRDFKLSNILFNEENVA  181 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~---------~i~H~dlk~~nili~~~~~~  181 (292)
                      |||+++|+|.++++        ....++..+..++.|++.||.|||   ..         +++||||||+|||++.++.+
T Consensus        91 ~e~~~~g~L~~~l~--------~~~~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~  159 (336)
T 3g2f_A           91 MEYYPNGSLXKYLS--------LHTSDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHRDLNSRNVLVKNDGTC  159 (336)
T ss_dssp             ECCCTTCBHHHHHH--------HCCBCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECSSCSGGGEEECTTSCE
T ss_pred             EecCCCCcHHHHHh--------hcccchhHHHHHHHHHHHHHHHHH---hhhccccccccceeecccccceEEEcCCCcE
Confidence            99999999999994        234588899999999999999999   77         99999999999999999999


Q ss_pred             EEeecccccccCCCCc-------cchhhhhcccccccccccCC-------------C-----CeE--EEc-cchhhhhhc
Q 044211          182 KLFDFSFSISIPEGET-------HISELLSGLRAFDLARLNED-------------D-----GYV--VLL-DHIKKYFEE  233 (292)
Q Consensus       182 kl~Dfg~a~~~~~~~~-------~~~~~~~g~~~y~~~~~~~~-------------~-----Gvi--el~-~~~~~~~~~  233 (292)
                      ||+|||++..+.....       .......||..|++||....             +     |++  ||+ |..+++...
T Consensus       160 kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~  239 (336)
T 3g2f_A          160 VISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGE  239 (336)
T ss_dssp             EECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTS
T ss_pred             EEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCcc
Confidence            9999999987754321       11234568999988887653             1     888  888 654333221


Q ss_pred             cchhhhc---------------------ccccccCCC--CCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          234 DRLNEII---------------------DPLIMGDRS--CSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       234 ~~~~~~~---------------------~~~~~~~~~--~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                       ......                     ........+  ......+++.+.+|+.+||+.||++|| +.|+++.|+++..
T Consensus       240 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~  318 (336)
T 3g2f_A          240 -SVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMM  318 (336)
T ss_dssp             -CCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -chhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHH
Confidence             111100                     000011111  111235788899999999999999999 9999999999864

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=260.94  Aligned_cols=222  Identities=15%  Similarity=0.190  Sum_probs=175.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.+...   .......+.+|+.+++.++||||+++++++......++||||+
T Consensus        25 ~G~fG~V~~~~~~~-------~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~   97 (384)
T 4fr4_A           25 KGSFGKVCIVQKND-------TKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLL   97 (384)
T ss_dssp             CCTTCCEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecC
Confidence            99999999999875       8899999998643   2234567899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+|+|.+++.       ....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++.....
T Consensus        98 ~gg~L~~~l~-------~~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~  167 (384)
T 4fr4_A           98 LGGDLRYHLQ-------QNVHFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPR  167 (384)
T ss_dssp             TTEEHHHHHH-------TTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             CCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccC
Confidence            9999999993       3457999999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCccchhhhhcccccccccccC---------CC-----CeE--EEc-cchhhhhh--ccchhhhcccccccCCCCCCchH
Q 044211          195 GETHISELLSGLRAFDLARLNE---------DD-----GYV--VLL-DHIKKYFE--EDRLNEIIDPLIMGDRSCSGNQQ  255 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  255 (292)
                      ..  ......||+.|++|++..         ++     |++  ||+ |.. |+..  .......+..........+  ..
T Consensus       168 ~~--~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~-Pf~~~~~~~~~~~~~~~~~~~~~~p--~~  242 (384)
T 4fr4_A          168 ET--QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRR-PYHIRSSTSSKEIVHTFETTVVTYP--SA  242 (384)
T ss_dssp             TC--CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSC-SSCCCTTSCHHHHHHHHHHCCCCCC--TT
T ss_pred             CC--ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCC-CCCCCCCccHHHHHHHHhhcccCCC--Cc
Confidence            32  234567999999988753         11     888  888 554 3321  1112222222222222222  25


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-H-HHHH
Q 044211          256 QLQAFAHLIFECVNESPVDRP-M-VDVA  281 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~-~el~  281 (292)
                      .+..+.+|+.+||+.||++|| + .++.
T Consensus       243 ~s~~~~~li~~lL~~dP~~R~s~~~~l~  270 (384)
T 4fr4_A          243 WSQEMVSLLKKLLEPNPDQRFSQLSDVQ  270 (384)
T ss_dssp             SCHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred             CCHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence            667899999999999999999 5 4443

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=4.3e-36  Score=260.62  Aligned_cols=222  Identities=17%  Similarity=0.266  Sum_probs=176.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       +++.||+|.++..   .......+..|..++..+ +||||+++++++...+..++||||
T Consensus        27 ~G~fg~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~   99 (345)
T 1xjd_A           27 KGSFGKVFLAEFKK-------TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEY   99 (345)
T ss_dssp             ECSSSEEEEEEETT-------TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeC
Confidence            89999999999875       8999999999653   123456688899999987 899999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++..       ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++...
T Consensus       100 ~~gg~L~~~l~~-------~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~  169 (345)
T 1xjd_A          100 LNGGDLMYHIQS-------CHKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENM  169 (345)
T ss_dssp             CTTCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred             CCCCcHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhcc
Confidence            999999999943       346899999999999999999999   8999999999999999999999999999998653


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......||+.|++||+....           |++  ||+ |.. |+.. ......+..........+  ...++.
T Consensus       170 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~-Pf~~-~~~~~~~~~i~~~~~~~p--~~~s~~  244 (345)
T 1xjd_A          170 LGDA-KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQS-PFHG-QDEEELFHSIRMDNPFYP--RWLEKE  244 (345)
T ss_dssp             CTTC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC-SSCC-SSHHHHHHHHHHCCCCCC--TTSCHH
T ss_pred             cCCC-cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCC-CCCC-CCHHHHHHHHHhCCCCCC--cccCHH
Confidence            3222 23456799999888865432           888  888 544 4432 222333333333333332  256678


Q ss_pred             HHHHHhHhcCCCCCCCC-HH-HHH
Q 044211          260 FAHLIFECVNESPVDRP-MV-DVA  281 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~-el~  281 (292)
                      +.+++.+||+.||++|| +. ++.
T Consensus       245 ~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          245 AKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             HHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             HHHHHHHHhcCCHhHcCCChHHHH
Confidence            99999999999999999 86 554

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.5e-35  Score=258.25  Aligned_cols=228  Identities=15%  Similarity=0.182  Sum_probs=177.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-----CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-----KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||+|....       +++.||+|.++..     .....+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus        34 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e  106 (351)
T 3c0i_A           34 KGPFSVVRRCINRE-------TGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFE  106 (351)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEe
Confidence            89999999999875       8999999998532     12245779999999999999999999999999999999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc---eEEeecccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV---AKLFDFSFS  189 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~---~kl~Dfg~a  189 (292)
                      |+++|+|.+.+....   .....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.   +||+|||++
T Consensus       107 ~~~g~~L~~~l~~~~---~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a  180 (351)
T 3c0i_A          107 FMDGADLCFEIVKRA---DAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVA  180 (351)
T ss_dssp             CCSSCBHHHHHHHHH---HTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred             CCCCCCHHHHHHHhc---ccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcce
Confidence            999999998885332   13456899999999999999999999   899999999999999986654   999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC--c
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG--N  253 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  253 (292)
                      ........ ......||+.|++||.....           |++  +|+ |.. |+....  ...+.....+....+.  .
T Consensus       181 ~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~-pf~~~~--~~~~~~i~~~~~~~~~~~~  256 (351)
T 3c0i_A          181 IQLGESGL-VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCL-PFYGTK--ERLFEGIIKGKYKMNPRQW  256 (351)
T ss_dssp             EECCTTSC-BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC-SSCSSH--HHHHHHHHHTCCCCCHHHH
T ss_pred             eEecCCCe-eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCC-CCCCcH--HHHHHHHHcCCCCCCcccc
Confidence            87754332 23345789999888865432           888  888 543 443321  1222222222222211  0


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ...+..+.+|+.+||+.||++|| +.++++
T Consensus       257 ~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          257 SHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             TTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            23467899999999999999999 999986

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.1e-35  Score=254.54  Aligned_cols=232  Identities=19%  Similarity=0.147  Sum_probs=172.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.+....   ....+.+.+|+.++++++||||+++++++...+..++|+||+
T Consensus        44 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  116 (309)
T 2h34_A           44 RGGMGDVYEAEDTV-------RERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLI  116 (309)
T ss_dssp             ECSSSEEEEEEETT-------TTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             CCCCeeEEEEEEcC-------CCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEEEec
Confidence            89999999999865       88999999987542   223467899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.+++..       ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.....
T Consensus       117 ~~~~L~~~l~~-------~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  186 (309)
T 2h34_A          117 NGVDLAAMLRR-------QGPLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTD  186 (309)
T ss_dssp             CCEEHHHHHHH-------HCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC------
T ss_pred             CCCCHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCccccc
Confidence            99999999943       346899999999999999999999   89999999999999999999999999999987755


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCC--CCchHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC--SGNQQQLQ  258 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  258 (292)
                      ..........|+..|.+||....      +     |++  +|+ |+. |+.... ... +...+....+.  ..+...++
T Consensus       187 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~  263 (309)
T 2h34_A          187 EKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSP-PYQGDQ-LSV-MGAHINQAIPRPSTVRPGIPV  263 (309)
T ss_dssp             ----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSC-SSCSCH-HHH-HHHHHHSCCCCGGGTSTTCCT
T ss_pred             cccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCC-CCCCch-HHH-HHHHhccCCCCccccCCCCCH
Confidence            44333445678899988876532      2     888  888 543 332221 111 11111111110  01124566


Q ss_pred             HHHHHHhHhcCCCCCCCC--HHHHHHHHHHhhh
Q 044211          259 AFAHLIFECVNESPVDRP--MVDVAKKTQANVC  289 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP--~~el~~~L~~l~~  289 (292)
                      .+.+++.+||+.||++||  +.++++.|+++..
T Consensus       264 ~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~  296 (309)
T 2h34_A          264 AFDAVIARGMAKNPEDRYVTCGDLSAAAHAALA  296 (309)
T ss_dssp             HHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence            899999999999999998  8999999987653

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=9.7e-36  Score=255.28  Aligned_cols=247  Identities=17%  Similarity=0.213  Sum_probs=182.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhc-CCCCccceeeeeecCC-cceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQM-IHRCIFKLIGCCLETQ-IPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~-~~~lv~e~~  114 (292)
                      +|+||.||+|.+...  ....+++.||+|.++.... .....+.+|+.+++++ +||||+++++++...+ ..++|+||+
T Consensus        37 ~G~~g~Vy~~~~~~~--~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv~e~~  114 (316)
T 2xir_A           37 RGAFGQVIEADAFGI--DKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFC  114 (316)
T ss_dssp             ECSSEEEEEEEEESS--SSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECC
T ss_pred             CCCceeEEEEEEecC--CccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEEEEcC
Confidence            899999999985210  0112678999999976533 3446789999999999 7999999999988754 489999999


Q ss_pred             CCCChhHHhhhhCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEee
Q 044211          115 NCGSLADRIRIHHTPQ---------PQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFD  185 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~D  185 (292)
                      ++|+|.+++.......         .....+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+|
T Consensus       115 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~D  191 (316)
T 2xir_A          115 KFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICD  191 (316)
T ss_dssp             TTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECC
T ss_pred             CCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEECC
Confidence            9999999995332100         01233889999999999999999999   89999999999999999999999999


Q ss_pred             cccccccCCCCc-cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCC
Q 044211          186 FSFSISIPEGET-HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       186 fg~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      ||++........ .......|++.|++|+....      +     |++  +|+ +...|+...............+. ..
T Consensus       192 fg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~-~~  270 (316)
T 2xir_A          192 FGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT-RM  270 (316)
T ss_dssp             CGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTC-CC
T ss_pred             CccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCc-cC
Confidence            999987654332 22344567888988875422      2     888  887 35555543322222211111111 11


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ..+...++.+.+++.+||+.||.+|| +.++++.|+.+.+.
T Consensus       271 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  311 (316)
T 2xir_A          271 RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  311 (316)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence            11235677899999999999999999 99999999998754

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=2.2e-35  Score=250.33  Aligned_cols=225  Identities=16%  Similarity=0.228  Sum_probs=174.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeec----CCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE----TQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~----~~~~~lv~  111 (292)
                      +|+||.||+|.+..       ++..||+|.+...  .....+.+.+|+.++++++||||+++++++..    ....++||
T Consensus        36 ~G~~g~Vy~~~~~~-------~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~  108 (290)
T 1t4h_A           36 RGSFKTVYKGLDTE-------TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             CCCCeEEEEeEecC-------CceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEE
Confidence            89999999999875       8889999998653  33445678999999999999999999999875    34579999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--cccCCCCCCceEec-CCCceEEeeccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP--VIFRDFKLSNILFN-EENVAKLFDFSF  188 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~--i~H~dlk~~nili~-~~~~~kl~Dfg~  188 (292)
                      ||+++|+|.+++..       ...+++..+..++.|++.||.|||   ..+  ++|+||||+||+++ .++.+||+|||+
T Consensus       109 e~~~~~~L~~~l~~-------~~~~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~  178 (290)
T 1t4h_A          109 ELMTSGTLKTYLKR-------FKVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGL  178 (290)
T ss_dssp             ECCCSCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTG
T ss_pred             EecCCCCHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCC
Confidence            99999999999943       346899999999999999999999   777  99999999999998 789999999999


Q ss_pred             ccccCCCCccchhhhhcccccccccccCCC----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHH
Q 044211          189 SISIPEGETHISELLSGLRAFDLARLNEDD----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQ  256 (292)
Q Consensus       189 a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (292)
                      +.......   .....|++.|++|+.....          |++  +|+....|+...............+..+...+...
T Consensus       179 ~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (290)
T 1t4h_A          179 ATLKRASF---AKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVA  255 (290)
T ss_dssp             GGGCCTTS---BEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCC
T ss_pred             cccccccc---cccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccccCCCC
Confidence            97654332   2335688999888765432          888  88833334443333333333222222222222344


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ++.+.+++.+||+.||++|| +.++++
T Consensus       256 ~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          256 IPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CHHHHHHHHHHccCChhhCCCHHHHhh
Confidence            56899999999999999999 999986

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=1.6e-35  Score=255.85  Aligned_cols=232  Identities=16%  Similarity=0.122  Sum_probs=178.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....       +++.||||.+.....  ...+.+|+.+++++ +||||+++++++...+..++||||+ +
T Consensus        19 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~   88 (330)
T 2izr_A           19 CGNFGELRLGKNLY-------TNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-G   88 (330)
T ss_dssp             C-CTTSEEEEEETT-------TTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-C
T ss_pred             ccCCceEEEEEECC-------CCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-C
Confidence            89999999999754       899999999875432  23588999999999 9999999999999999999999999 8


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc-----eEEeecccccc
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV-----AKLFDFSFSIS  191 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~-----~kl~Dfg~a~~  191 (292)
                      ++|.+++...      ...+++..++.++.|++.||.|||   +.+++||||||+|||++.++.     +||+|||++..
T Consensus        89 ~~L~~~~~~~------~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~  159 (330)
T 2izr_A           89 PSLEDLFDLC------DRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKE  159 (330)
T ss_dssp             CBHHHHHHHT------TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEE
T ss_pred             CCHHHHHHHc------CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEccccee
Confidence            9999999432      457999999999999999999999   899999999999999998887     99999999987


Q ss_pred             cCCCCcc------chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhc--cchhhhcccccccCCC
Q 044211          192 IPEGETH------ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEE--DRLNEIIDPLIMGDRS  249 (292)
Q Consensus       192 ~~~~~~~------~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~--~~~~~~~~~~~~~~~~  249 (292)
                      +......      ......||+.|++|+.....           |++  ||+ |.. |+...  ......+........+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~-Pf~~~~~~~~~~~~~~i~~~~~~  238 (330)
T 2izr_A          160 YIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSL-PWQGLKADTLKERYQKIGDTKRA  238 (330)
T ss_dssp             SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC-TTTTCCCSSHHHHHHHHHHHHHH
T ss_pred             eecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCC-CccccccccHHHHHHHHHhhhcc
Confidence            6543321      12456789999888765433           888  888 543 33321  1111111111111111


Q ss_pred             CCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          250 CSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       250 ~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+.   ...++ .+.+++.+||+.||.+|| +.+|.+.|+++...
T Consensus       239 ~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~  282 (330)
T 2izr_A          239 TPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR  282 (330)
T ss_dssp             SCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence            110   01234 899999999999999999 99999999987643

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.9e-35  Score=251.04  Aligned_cols=226  Identities=13%  Similarity=0.130  Sum_probs=172.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+|.+..       +++.||+|.+...  .......+.+|+.++++++||||+++++++...+..++||||+.
T Consensus        12 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   84 (292)
T 3o0g_A           12 EGTYGTVFKAKNRE-------THEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCD   84 (292)
T ss_dssp             ECSSSEEEEEEETT-------TCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             CCCCeEEEEEEECC-------CCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCC
Confidence            79999999999976       8899999998754  23344678999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      + ++.+.+.      .....+++..+..++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||++......
T Consensus        85 ~-~l~~~~~------~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  154 (292)
T 3o0g_A           85 Q-DLKKYFD------SCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIP  154 (292)
T ss_dssp             E-EHHHHHH------HTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSC
T ss_pred             C-CHHHHHH------hCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCc
Confidence            5 6666663      23457999999999999999999999   899999999999999999999999999999876433


Q ss_pred             CccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhcccccc---------------
Q 044211          196 ETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIM---------------  245 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~---------------  245 (292)
                      . .......||..|++||....       +     |++  +|+ |..+++ ........+.....               
T Consensus       155 ~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  232 (292)
T 3o0g_A          155 V-RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF-PGNDVDDQLKRIFRLLGTPTEEQWPSMTK  232 (292)
T ss_dssp             C-SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSC-CCSSHHHHHHHHHHHHCCCCTTTCTTGGG
T ss_pred             c-ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCc-CCCCHHHHHHHHHHHhCCCChhhhhhhcc
Confidence            2 22334567889988875422       1     888  888 554332 22211111110000               


Q ss_pred             -----c-------CCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          246 -----G-------DRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       246 -----~-------~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                           .       ..........+..+.+|+.+||+.||++|| +.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          233 LPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             STTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence                 0       000000124567889999999999999999 999986

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=2.3e-35  Score=256.27  Aligned_cols=219  Identities=17%  Similarity=0.231  Sum_probs=172.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       +++.||+|.++..   .......+.+|..++.++ +||||+++++++...+..++||||
T Consensus        19 ~G~fg~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~   91 (345)
T 3a8x_A           19 RGSYAKVLLVRLKK-------TDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEY   91 (345)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECC
T ss_pred             ecCCeEEEEEEECC-------CCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeC
Confidence            89999999999875       8999999999753   223446688999999988 899999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++..       ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++...
T Consensus        92 ~~gg~L~~~l~~-------~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~  161 (345)
T 3a8x_A           92 VNGGDLMFHMQR-------QRKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL  161 (345)
T ss_dssp             CCSCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSC
T ss_pred             CCCCcHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEecccccccc
Confidence            999999999943       346899999999999999999999   8999999999999999999999999999998643


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhc--------cchhhhcccccccCCCCC
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEE--------DRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  251 (292)
                      ... .......||+.|++||+....           |++  ||+ |+. |+...        .................+
T Consensus       162 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~-pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p  239 (345)
T 3a8x_A          162 RPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS-PFDIVGSSDNPDQNTEDYLFQVILEKQIRIP  239 (345)
T ss_dssp             CTT-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC-TTTTTTC-------CHHHHHHHHHHCCCCCC
T ss_pred             CCC-CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCC-CcCCcccccccccccHHHHHHHHHcCCCCCC
Confidence            222 123456799999888875433           888  888 654 44221        111111122222222222


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-H
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~  277 (292)
                        ...+..+.+|+.+||+.||.+|| +
T Consensus       240 --~~~s~~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          240 --RSLSVKAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             --TTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred             --CCCCHHHHHHHHHHhcCCHhHCCCC
Confidence              25667899999999999999999 7

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=4e-35  Score=246.75  Aligned_cols=228  Identities=18%  Similarity=0.207  Sum_probs=176.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....       +++.||+|.++.. .....+.+.+|+.+++.++||||+++++++...+..++|+||+++
T Consensus        17 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   89 (276)
T 2yex_A           17 EGAYGEVQLAVNRV-------TEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSG   89 (276)
T ss_dssp             ECSSSEEEEEEETT-------TCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             cCCCcEEEEEEECC-------CCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEecCC
Confidence            89999999999875       8899999998643 234457789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++.       ....+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++.......
T Consensus        90 ~~L~~~l~-------~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~  159 (276)
T 2yex_A           90 GELFDRIE-------PDIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNN  159 (276)
T ss_dssp             EEGGGGSB-------TTTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred             CcHHHHHh-------hccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCc
Confidence            99999992       3456899999999999999999999   8999999999999999999999999999998664322


Q ss_pred             c-cchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 T-HISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~-~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      . .......|+..|.+|+.....            |++  +|+ |.. |+.........+................++.+
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (276)
T 2yex_A          160 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGEL-PWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAP  238 (276)
T ss_dssp             EECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSC-CCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHH
T ss_pred             chhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCC-CCCCCchHHHHHHHhhhcccccCchhhcCHHH
Confidence            1 123345688899888875432            888  888 543 33222111111111111111111223567789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+++.+||+.||++|| +.++++.
T Consensus       239 ~~li~~~l~~~p~~Rps~~~il~~  262 (276)
T 2yex_A          239 LALLHKILVENPSARITIPDIKKD  262 (276)
T ss_dssp             HHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             HHHHHHHCCCCchhCCCHHHHhcC
Confidence            9999999999999999 9998763

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=4.4e-35  Score=247.36  Aligned_cols=224  Identities=17%  Similarity=0.220  Sum_probs=176.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec--------------
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE--------------  103 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--------------  103 (292)
                      +|+||.||+|.+..       +++.||+|.++...    ..+.+|+.++++++||||+++++++..              
T Consensus        21 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~   89 (284)
T 2a19_B           21 SGGFGQVFKAKHRI-------DGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSR   89 (284)
T ss_dssp             CSSSCCEEEEEETT-------TCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------C
T ss_pred             cCCceEEEEEEEcC-------CCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccc
Confidence            89999999999865       89999999997653    346689999999999999999998854              


Q ss_pred             --CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCce
Q 044211          104 --TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVA  181 (292)
Q Consensus       104 --~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~  181 (292)
                        ....++||||+++|+|.+++...     ....+++..++.++.|++.||.|||   ..+++|+||+|+||+++.++.+
T Consensus        90 ~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~  161 (284)
T 2a19_B           90 SKTKCLFIQMEFCDKGTLEQWIEKR-----RGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQV  161 (284)
T ss_dssp             CEEEEEEEEECCCCSCBHHHHHHHG-----GGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEE
T ss_pred             cCcceEEEEEeccCCCCHHHHHhhc-----cCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcCCCCE
Confidence              34478999999999999999533     2356899999999999999999999   8999999999999999999999


Q ss_pred             EEeecccccccCCCCccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccC
Q 044211          182 KLFDFSFSISIPEGETHISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD  247 (292)
Q Consensus       182 kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~  247 (292)
                      ||+|||++........  .....|++.|++|+...      ++     |++  +|+ |..++..............    
T Consensus       162 kl~Dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~----  235 (284)
T 2a19_B          162 KIGDFGLVTSLKNDGK--RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGI----  235 (284)
T ss_dssp             EECCCTTCEESSCCSC--CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTTC----
T ss_pred             EECcchhheecccccc--ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHHHHHHhhccc----
Confidence            9999999987754332  23346888998887543      22     888  888 5543332221111111111    


Q ss_pred             CCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          248 RSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       248 ~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+    ...+..+.+++.+||+.||.+|| +.|+++.|+.+..+
T Consensus       236 ~~----~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~  275 (284)
T 2a19_B          236 IS----DIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKS  275 (284)
T ss_dssp             CC----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-
T ss_pred             cc----ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhC
Confidence            11    13455789999999999999999 99999999988754

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=1.1e-35  Score=258.68  Aligned_cols=223  Identities=21%  Similarity=0.307  Sum_probs=175.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||||.+.....   ...+.+.+|+.++++++||||+++++++...+..++||||+
T Consensus        64 ~G~~g~Vy~a~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~  136 (348)
T 1u5q_A           64 HGSFGAVYFARDVR-------NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYC  136 (348)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCCCEEEEEEEEcc-------CCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEecC
Confidence            89999999999754       899999999975432   23357899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      . |+|.+++...      ...+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++.....
T Consensus       137 ~-g~l~~~l~~~------~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~  206 (348)
T 1u5q_A          137 L-GSASDLLEVH------KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  206 (348)
T ss_dssp             S-EEHHHHHHHH------TSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred             C-CCHHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCC
Confidence            8 6898888432      356899999999999999999999   88999999999999999999999999999976643


Q ss_pred             CCccchhhhhcccccccccccC---------CC-----CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE---------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      .     ....||+.|++||...         ++     |++  ||+....|+........ +........+.......+.
T Consensus       207 ~-----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  280 (348)
T 1u5q_A          207 A-----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA-LYHIAQNESPALQSGHWSE  280 (348)
T ss_dssp             B-----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-HHHHHHSCCCCCCCTTSCH
T ss_pred             C-----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHhcCCCCCCCCCCCH
Confidence            2     2356899998888641         11     888  88833334433322221 1112222222222235667


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+.+++.+||+.||++|| +.++++.
T Consensus       281 ~l~~li~~~l~~dP~~Rps~~~ll~h  306 (348)
T 1u5q_A          281 YFRNFVDSCLQKIPQDRPTSEVLLKH  306 (348)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             HHHHHHHHHcccChhhCcCHHHHhhC
Confidence            899999999999999999 9998865

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=4.1e-35  Score=248.98  Aligned_cols=228  Identities=17%  Similarity=0.206  Sum_probs=174.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       +++.||+|.+........+.+.+|+.+++.++||||+++++++...+..++|+||++++
T Consensus        32 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  104 (295)
T 2clq_A           32 KGTYGIVYAGRDLS-------NQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGG  104 (295)
T ss_dssp             ECSSSEEEEEEETT-------TCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred             ecCcEEEEEEEECC-------CCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCC
Confidence            89999999999865       88999999998766666678999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-CCceEEeecccccccCCCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-ENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~a~~~~~~~  196 (292)
                      +|.+++....    ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++. ++.+||+|||++.......
T Consensus       105 ~L~~~l~~~~----~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~  177 (295)
T 2clq_A          105 SLSALLRSKW----GPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN  177 (295)
T ss_dssp             EHHHHHHHTT----CCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC--
T ss_pred             CHHHHHHhhc----cCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCC
Confidence            9999995331    2446778899999999999999999   899999999999999997 8999999999998764322


Q ss_pred             ccchhhhhcccccccccccC--------CC-----CeE--EEc-cchhhhhhccchhh-hcccccccCCCCCCchHHHHH
Q 044211          197 THISELLSGLRAFDLARLNE--------DD-----GYV--VLL-DHIKKYFEEDRLNE-IIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~--------~~-----Gvi--el~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  259 (292)
                       .......|+..|.+|+...        ++     |++  +|+ |+. |+........ ..........+ ..+...++.
T Consensus       178 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  254 (295)
T 2clq_A          178 -PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKP-PFYELGEPQAAMFKVGMFKVHP-EIPESMSAE  254 (295)
T ss_dssp             ----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSC-TTGGGSSHHHHHHHHHHHCCCC-CCCTTSCHH
T ss_pred             -CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCC-CccCCCchhHHHHhhccccccc-cccccCCHH
Confidence             1223456888898877542        22     888  888 544 4433222111 11111111111 111356778


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+++.+||+.||++|| +.++++
T Consensus       255 ~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          255 AKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             HHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHccCChhhCCCHHHHhc
Confidence            99999999999999999 999875

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=2.2e-35  Score=248.58  Aligned_cols=225  Identities=19%  Similarity=0.195  Sum_probs=178.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       ++..||+|.+........+.+.+|+.++++++||||+++++++......++||||++++
T Consensus        19 ~G~~g~V~~~~~~~-------~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   91 (277)
T 3f3z_A           19 RGSWGEVKIAVQKG-------TRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGG   91 (277)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSC
T ss_pred             ecCCEEEEEEEeCC-------CCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEeccCCC
Confidence            89999999999875       78899999997765556778999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe---cCCCceEEeecccccccCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili---~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +|.+++.       ....+++..+..++.|++.||.|||   +.+++|+||||+||++   +.++.+||+|||++.....
T Consensus        92 ~L~~~~~-------~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~  161 (277)
T 3f3z_A           92 ELFERVV-------HKRVFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKP  161 (277)
T ss_dssp             BHHHHHH-------HHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCT
T ss_pred             cHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccC
Confidence            9999984       2345899999999999999999999   8999999999999999   7888999999999987654


Q ss_pred             CCccchhhhhcccccccccccCC-----C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCc--hHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED-----D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGN--QQQLQA  259 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~-----~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  259 (292)
                      ...  .....||+.|.+|+....     +     |++  +|+ |.. |+... ...........+....+..  ...++.
T Consensus       162 ~~~--~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~-p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (277)
T 3f3z_A          162 GKM--MRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYP-PFSAP-TDSEVMLKIREGTFTFPEKDWLNVSPQ  237 (277)
T ss_dssp             TSC--BCCCCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSC-SSCCS-SHHHHHHHHHHCCCCCCHHHHTTSCHH
T ss_pred             ccc--hhccCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCC-CCCCC-CHHHHHHHHHhCCCCCCchhhhcCCHH
Confidence            332  234568889988776432     2     888  888 543 33222 2222222222222222210  134678


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+++.+||+.||++|| +.++++.
T Consensus       238 ~~~li~~~l~~dp~~R~s~~~~l~h  262 (277)
T 3f3z_A          238 AESLIRRLLTKSPKQRITSLQALEH  262 (277)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             HHHHHHHHccCChhhCcCHHHHhcC
Confidence            99999999999999999 9999863

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=248.84  Aligned_cols=233  Identities=18%  Similarity=0.230  Sum_probs=179.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCC--cceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ--IPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~--~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.++... ....+.+.+|+.++++++||||+++++++....  ..++||||+
T Consensus        19 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~   91 (319)
T 4euu_A           19 QGATANVFRGRHKK-------TGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFC   91 (319)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECC
T ss_pred             CCCCeEEEEEEECC-------CCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCC
Confidence            89999999999975       79999999997542 234567889999999999999999999988655  678999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe----cCCCceEEeeccccc
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF----NEENVAKLFDFSFSI  190 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili----~~~~~~kl~Dfg~a~  190 (292)
                      ++|+|.+++....    ....+++..++.++.|++.||.|||   +.+++|+||||+|||+    +.++.+||+|||++.
T Consensus        92 ~~~~L~~~l~~~~----~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~  164 (319)
T 4euu_A           92 PCGSLYTVLEEPS----NAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR  164 (319)
T ss_dssp             TTCBHHHHHHSGG----GTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred             CCCCHHHHHHHhc----cccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence            9999999995332    2334999999999999999999999   8999999999999999    777889999999998


Q ss_pred             ccCCCCccchhhhhcccccccccccC--------------CC-----CeE--EEc-cchhhhhh---ccchhhhcccccc
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNE--------------DD-----GYV--VLL-DHIKKYFE---EDRLNEIIDPLIM  245 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~--------------~~-----Gvi--el~-~~~~~~~~---~~~~~~~~~~~~~  245 (292)
                      .......  .....||..|++||...              ++     |++  ||+ |.. |+..   .......+...+.
T Consensus       165 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~~~~~~~~~~~~~~~~~  241 (319)
T 4euu_A          165 ELEDDEQ--FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSL-PFRPFEGPRRNKEVMYKIIT  241 (319)
T ss_dssp             ECCTTCC--BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSC-SEECTTCGGGCHHHHHHHHH
T ss_pred             ecCCCCc--eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCccchhHHHHHHHhc
Confidence            7755432  23356889998877532              22     888  888 654 3221   1111111111111


Q ss_pred             cCC-----------------------CCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          246 GDR-----------------------SCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       246 ~~~-----------------------~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +.+                       +.......+..+.+++.+||+.||++|| +.|+++...+-
T Consensus       242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~  307 (319)
T 4euu_A          242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI  307 (319)
T ss_dssp             HCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred             CCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence            111                       1112257788999999999999999999 99999988763

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1.8e-35  Score=249.39  Aligned_cols=228  Identities=19%  Similarity=0.248  Sum_probs=171.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecC-CcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLET-QIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-~~~~lv~e~~~~  116 (292)
                      +|+||.||++.+         +++.||+|.++...  ..+.+.+|+.++++++||||+++++++... +..++|+||+++
T Consensus        31 ~G~~g~V~~~~~---------~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~   99 (278)
T 1byg_A           31 KGEFGDVMLGDY---------RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK   99 (278)
T ss_dssp             ECSSCEEEEEEE---------TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTT
T ss_pred             cCCCceEEEEEE---------cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCC
Confidence            899999999998         78999999987653  456789999999999999999999997654 478999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++....     ...+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++.......
T Consensus       100 ~~L~~~l~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~  171 (278)
T 1byg_A          100 GSLVDYLRSRG-----RSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ  171 (278)
T ss_dssp             EEHHHHHHHHH-----HHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC--------
T ss_pred             CCHHHHHHhcc-----cccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeeccccccccccc
Confidence            99999995321     234788999999999999999999   8999999999999999999999999999987654322


Q ss_pred             ccchhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                          ....++..|.+|+....      +     |++  +|++ ...|+... ...........+. ....+..+++.+.+
T Consensus       172 ----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~~  245 (278)
T 1byg_A          172 ----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI-PLKDVVPRVEKGY-KMDAPDGCPPAVYE  245 (278)
T ss_dssp             --------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS-CGGGHHHHHTTTC-CCCCCTTCCHHHHH
T ss_pred             ----cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHhcCC-CCCCcccCCHHHHH
Confidence                23356778888776432      2     888  8873 55444332 2222222222221 12222466789999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ++.+||+.||++|| +.++++.|+++...
T Consensus       246 li~~~l~~~p~~Rps~~~l~~~L~~i~~~  274 (278)
T 1byg_A          246 VMKNCWHLDAAMRPSFLQLREQLEHIKTH  274 (278)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence            99999999999999 99999999998754

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=4.3e-34  Score=247.73  Aligned_cols=233  Identities=17%  Similarity=0.222  Sum_probs=179.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHh--cCCCCccceeeeeecCC----cceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQ--MIHRCIFKLIGCCLETQ----IPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~~~~~----~~~lv~  111 (292)
                      +|+||.||+|.+         +++.||+|.++..   ....+.+|.+++..  ++||||+++++++....    ..++||
T Consensus        52 ~G~~g~Vy~~~~---------~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~  119 (342)
T 1b6c_B           52 KGRFGEVWRGKW---------RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS  119 (342)
T ss_dssp             EETTEEEEEEEE---------TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEE
T ss_pred             CCCCcEEEEEEE---------cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEE
Confidence            899999999998         8899999998643   34667889998887  68999999999998765    789999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCcccCCCCCCceEecCCCceEEeec
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF-----PRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~-----~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      ||+++|+|.+++.        ...+++..++.++.|++.||.|||...     ..+++|+||||+|||++.++.+||+||
T Consensus       120 e~~~~g~L~~~l~--------~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df  191 (342)
T 1b6c_B          120 DYHEHGSLFDYLN--------RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  191 (342)
T ss_dssp             CCCTTCBHHHHHH--------HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCC
T ss_pred             eecCCCcHHHHHh--------ccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEEC
Confidence            9999999999994        235899999999999999999999321     368999999999999999999999999


Q ss_pred             ccccccCCCCcc---chhhhhcccccccccccCC------------C-----CeE--EEc-cc---------hhhhhhcc
Q 044211          187 SFSISIPEGETH---ISELLSGLRAFDLARLNED------------D-----GYV--VLL-DH---------IKKYFEED  234 (292)
Q Consensus       187 g~a~~~~~~~~~---~~~~~~g~~~y~~~~~~~~------------~-----Gvi--el~-~~---------~~~~~~~~  234 (292)
                      |++.........   ......||..|++||....            +     |++  ||+ |.         ..|+....
T Consensus       192 g~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~  271 (342)
T 1b6c_B          192 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV  271 (342)
T ss_dssp             TTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred             CCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccC
Confidence            999877544322   2234568899988876532            2     888  888 53         23333221


Q ss_pred             c----hhhhcccccccCC-CCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          235 R----LNEIIDPLIMGDR-SCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       235 ~----~~~~~~~~~~~~~-~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .    ............. +...    ..+++..+.+|+.+||+.||++|| +.++++.|+++.++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~  337 (342)
T 1b6c_B          272 PSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  337 (342)
T ss_dssp             CSSCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             cCcccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence            1    1111111111111 1111    136788999999999999999999 99999999998765

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=3.8e-35  Score=248.38  Aligned_cols=228  Identities=18%  Similarity=0.217  Sum_probs=171.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||++....       ++..||+|.+... .....+.+.+|+.++++++||||+++++++......++||||+++
T Consensus        32 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  104 (285)
T 3is5_A           32 SGAFGDVHLVEERS-------SGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEG  104 (285)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCSC
T ss_pred             cCCCeEEEEEEEcc-------CCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeCCC
Confidence            89999999999875       8899999998654 233457899999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe---cCCCceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili---~~~~~~kl~Dfg~a~~~~  193 (292)
                      |+|.+++....   .....+++..+..++.|++.||.|||   +.+++|+||||+||++   +.++.+||+|||++....
T Consensus       105 ~~L~~~l~~~~---~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~  178 (285)
T 3is5_A          105 GELLERIVSAQ---ARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK  178 (285)
T ss_dssp             CBHHHHHHHHH---HHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred             CcHHHHHHhhh---hcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence            99999984321   12467999999999999999999999   8999999999999999   456789999999998765


Q ss_pred             CCCccchhhhhcccccccccccCCC----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCC-CchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS-GNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  259 (292)
                      ....  .....|+..|++|+.....          |++  +|+ |.. |+... ................. .....++.
T Consensus       179 ~~~~--~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~-pf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (285)
T 3is5_A          179 SDEH--STNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCL-PFTGT-SLEEVQQKATYKEPNYAVECRPLTPQ  254 (285)
T ss_dssp             ----------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSC-SSCCS-SHHHHHHHHHHCCCCCCC--CCCCHH
T ss_pred             Cccc--CcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCC-CCCCC-CHHHHHhhhccCCcccccccCcCCHH
Confidence            4322  2345688999888765433          888  888 543 33221 12221111111111111 00124568


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+++.+||+.||++|| +.|+++
T Consensus       255 ~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          255 AVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             HHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             HHHHHHHHccCChhhCcCHHHHhc
Confidence            89999999999999999 999985

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=254.32  Aligned_cols=233  Identities=17%  Similarity=0.214  Sum_probs=172.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeE----EEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERP----VSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~----vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||+|.+..       +++.    ||+|.+... .......+.+|+.++++++||||+++++++.... .++++|
T Consensus        25 ~G~~g~Vy~~~~~~-------~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~v~~   96 (327)
T 3lzb_A           25 SGAFGTVYKGLWIP-------EGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQ   96 (327)
T ss_dssp             ECSSEEEEEEEECC-------TTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEEEEC
T ss_pred             eCCCeEEEEEEEcC-------CCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceEEEE
Confidence            89999999999864       5554    577777543 3445678999999999999999999999998754 789999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+.+|+|.+++...      ...+++..++.++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++...
T Consensus        97 ~~~~g~L~~~l~~~------~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~  167 (327)
T 3lzb_A           97 LMPFGCLLDYVREH------KDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  167 (327)
T ss_dssp             CCSSCBHHHHHHHT------TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC----
T ss_pred             ecCCCcHHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEc
Confidence            99999999999532      456899999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCcc-chhhhhcccccccccccC------CC-----CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          193 PEGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       193 ~~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ...... ......++..|++|+...      ++     |++  +|+. ...|+... ........ +......+.+..++
T Consensus       168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~-~~~~~~~~-~~~~~~~~~~~~~~  245 (327)
T 3lzb_A          168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI-PASEISSI-LEKGERLPQPPICT  245 (327)
T ss_dssp             ------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-CGGGHHHH-HHTTCCCCCCTTBC
T ss_pred             cCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHH-HHcCCCCCCCccCC
Confidence            443222 223344577888877532      22     888  8773 55554332 22222221 11122222224677


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      ..+.+++.+||+.||.+|| +.|+++.|+++..
T Consensus       246 ~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~  278 (327)
T 3lzb_A          246 IDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            7899999999999999999 9999999998864

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=5.4e-35  Score=247.09  Aligned_cols=223  Identities=15%  Similarity=0.168  Sum_probs=173.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.++..  .......+.+|+..+..+ +||||+++++++...+..++||||+
T Consensus        21 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~   93 (289)
T 1x8b_A           21 SGEFGSVFKCVKRL-------DGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYC   93 (289)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             CCCceEEEEEEEcC-------CCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEEec
Confidence            89999999999875       8999999998754  333456789999999999 8999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC----------------
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE----------------  178 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~----------------  178 (292)
                      ++|+|.+++.....   ....+++..+..++.|++.||.|||   +.+++|+||||+||+++.+                
T Consensus        94 ~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~  167 (289)
T 1x8b_A           94 NGGSLADAISENYR---IMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWA  167 (289)
T ss_dssp             TTCBHHHHHHHHHH---HTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC------------------
T ss_pred             CCCcHHHHHHhhcc---cccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCccccccccccccc
Confidence            99999999954321   2356899999999999999999999   8999999999999999844                


Q ss_pred             ---CceEEeecccccccCCCCccchhhhhcccccccccccCCC------------CeE--EEccchhhhhhccchhhhcc
Q 044211          179 ---NVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLLDHIKKYFEEDRLNEIID  241 (292)
Q Consensus       179 ---~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~~~~~~~~~~~~~~~~~~  241 (292)
                         ..+||+|||.+........     ..|+..|.+||.....            |++  +|++..+++........+..
T Consensus       168 ~~~~~~kl~Dfg~~~~~~~~~~-----~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~  242 (289)
T 1x8b_A          168 SNKVMFKIGDLGHVTRISSPQV-----EEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEIRQ  242 (289)
T ss_dssp             --CCCEEECCCTTCEETTCSCC-----CCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHHHHHHT
T ss_pred             CCceEEEEcccccccccCCccc-----cCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhHHHHHHc
Confidence               4799999999987754332     3588899888765432            888  88833333322222222222


Q ss_pred             cccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 PLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ...    +. .+..+++.+.+++.+||+.||++|| +.++++.
T Consensus       243 ~~~----~~-~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  280 (289)
T 1x8b_A          243 GRL----PR-IPQVLSQEFTELLKVMIHPDPERRPSAMALVKH  280 (289)
T ss_dssp             TCC----CC-CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             CCC----CC-CCcccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence            111    11 1125567899999999999999999 9999863

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=4.1e-36  Score=266.19  Aligned_cols=226  Identities=12%  Similarity=0.142  Sum_probs=178.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.++..   .......+.+|..+++.++||||+++++++.....+++||||+
T Consensus        79 ~G~fG~V~~~~~~~-------~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~  151 (410)
T 3v8s_A           79 RGAFGEVQLVRHKS-------TRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYM  151 (410)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             cCCCEEEEEEEECC-------CCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCC
Confidence            99999999999875       8899999998642   1122345789999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.++++        ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.....
T Consensus       152 ~gg~L~~~l~--------~~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~  220 (410)
T 3v8s_A          152 PGGDLVNLMS--------NYDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNK  220 (410)
T ss_dssp             TTEEHHHHHH--------HCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             CCCcHHHHHH--------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeEeecc
Confidence            9999999993        235899999999999999999999   89999999999999999999999999999987765


Q ss_pred             CCccchhhhhcccccccccccC----------CC-----CeE--EEc-cchhhhhhccchhhhccccccc--CCCCCCch
Q 044211          195 GETHISELLSGLRAFDLARLNE----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMG--DRSCSGNQ  254 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  254 (292)
                      ..........||+.|++||+..          ++     |++  ||+ |+. |+... .....+...+..  ....+...
T Consensus       221 ~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~-Pf~~~-~~~~~~~~i~~~~~~~~~p~~~  298 (410)
T 3v8s_A          221 EGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDT-PFYAD-SLVGTYSKIMNHKNSLTFPDDN  298 (410)
T ss_dssp             TSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSC-TTCCS-SHHHHHHHHHTHHHHCCCCTTC
T ss_pred             CCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCC-CCCCC-ChhhHHHHHHhccccccCCCcc
Confidence            5444455678999999888543          22     888  888 544 44332 222222222211  11112112


Q ss_pred             HHHHHHHHHHhHhcCCCCCC--CC-HHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVD--RP-MVDVAKK  283 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~--RP-~~el~~~  283 (292)
                      ..+..+.+||.+||+.+|.+  || +.||++.
T Consensus       299 ~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H  330 (410)
T 3v8s_A          299 DISKEAKNLICAFLTDREVRLGRNGVEEIKRH  330 (410)
T ss_dssp             CCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred             cccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence            45678999999999999988  99 9998864

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=3.6e-35  Score=251.88  Aligned_cols=228  Identities=18%  Similarity=0.190  Sum_probs=171.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....       +++.||||.+..........+.+|+.++.++ +||||+++++++...+..++||||+++
T Consensus        23 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   95 (316)
T 2ac3_A           23 EGAHARVQTCINLI-------TSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRG   95 (316)
T ss_dssp             CCSSEEEEEEECSS-------SCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             CCceEEEEEEEEcC-------CCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCC
Confidence            89999999999865       8999999999876555667899999999995 799999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc---eEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV---AKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~---~kl~Dfg~a~~~~  193 (292)
                      |+|.+++..       ...+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.   +||+|||++....
T Consensus        96 ~~L~~~l~~-------~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~  165 (316)
T 2ac3_A           96 GSILSHIHK-------RRHFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIK  165 (316)
T ss_dssp             CBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---
T ss_pred             CcHHHHHhc-------cCCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCccccc
Confidence            999999943       346899999999999999999999   889999999999999997765   9999999997664


Q ss_pred             CCCc------cchhhhhcccccccccccC-----------CC-----CeE--EEc-cchhhhhhccch------------
Q 044211          194 EGET------HISELLSGLRAFDLARLNE-----------DD-----GYV--VLL-DHIKKYFEEDRL------------  236 (292)
Q Consensus       194 ~~~~------~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~-~~~~~~~~~~~~------------  236 (292)
                      .+..      .......||..|++||...           ++     |++  +|+ |+. |+......            
T Consensus       166 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~  244 (316)
T 2ac3_A          166 LNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYP-PFVGRCGSDCGWDRGEACPA  244 (316)
T ss_dssp             ----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSC-SCCCCCCSCSCC----CCHH
T ss_pred             cCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCC-CCcccccccccccccccchh
Confidence            3211      1122345899998887543           23     888  888 544 33222110            


Q ss_pred             --hhhcccccccCCCCCCc--hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          237 --NEIIDPLIMGDRSCSGN--QQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       237 --~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                        .........+....+..  ...++.+.+|+.+||+.||++|| +.|+++.
T Consensus       245 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  296 (316)
T 2ac3_A          245 CQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH  296 (316)
T ss_dssp             HHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence              11111112222222110  13466899999999999999999 9999873

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-35  Score=253.00  Aligned_cols=221  Identities=14%  Similarity=0.106  Sum_probs=169.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||+||+|.+..       +++.||||.+.....  ........|+..+.++ +||||+++++++...+..++||||+
T Consensus        67 ~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~~  139 (311)
T 3p1a_A           67 HGSYGEVFKVRSKE-------DGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC  139 (311)
T ss_dssp             EETTEEEEEEEETT-------TSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCCCeEEEEEEECC-------CCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEecc
Confidence            99999999999875       899999999865422  2334566666666666 8999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      . ++|.+++...      ...+++..+..++.|++.||.|||   +.+|+|+||||+|||++.++.+||+|||++.....
T Consensus       140 ~-~~L~~~~~~~------~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~  209 (311)
T 3p1a_A          140 G-PSLQQHCEAW------GASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGT  209 (311)
T ss_dssp             C-CBHHHHHHHH------CSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC-
T ss_pred             C-CCHHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeeccc
Confidence            5 6999998533      356999999999999999999999   88999999999999999999999999999987644


Q ss_pred             CCccchhhhhcccccccccccCCC----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA  261 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  261 (292)
                      ..  ......||+.|++||+....          |++  ||+ |...++ .......+.....    +...+...++.+.
T Consensus       210 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~  282 (311)
T 3p1a_A          210 AG--AGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPH-GGEGWQQLRQGYL----PPEFTAGLSSELR  282 (311)
T ss_dssp             -------CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTCCCCS-SHHHHHHHTTTCC----CHHHHTTSCHHHH
T ss_pred             CC--CCcccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCCCCCC-CccHHHHHhccCC----CcccccCCCHHHH
Confidence            32  23345689999888865533          888  888 654333 2222222222111    1111124467899


Q ss_pred             HHHhHhcCCCCCCCC-HHHHHH
Q 044211          262 HLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       262 ~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +++.+||+.||++|| +.|+++
T Consensus       283 ~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          283 SVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             HHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHHHcCCChhhCcCHHHHHh
Confidence            999999999999999 999986

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=4.7e-36  Score=257.10  Aligned_cols=232  Identities=15%  Similarity=0.213  Sum_probs=168.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHHHHHhcCCCCccceeeeeecCCcc----eEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIP----ILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~----~lv  110 (292)
                      +|+||.||+|.+..       +++.||+|.++....   .....+.+|+.++++++||||+++++++......    ++|
T Consensus        22 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv   94 (311)
T 3ork_A           22 FGGMSEVHLARDLR-------DHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIV   94 (311)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             cCCCEEEEEEEECC-------CCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEE
Confidence            89999999999865       899999999976422   3345788999999999999999999998865544    999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      |||+++|+|.+++..       ...+++..++.++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++.
T Consensus        95 ~e~~~g~~L~~~l~~-------~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~  164 (311)
T 3ork_A           95 MEYVDGVTLRDIVHT-------EGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIAR  164 (311)
T ss_dssp             EECCCEEEHHHHHHH-------HCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC-
T ss_pred             EecCCCCCHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCcc
Confidence            999999999999942       346899999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCc--cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC--
Q 044211          191 SIPEGET--HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG--  252 (292)
Q Consensus       191 ~~~~~~~--~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  252 (292)
                      .+.....  .......||+.|++||.....           |++  +|+ |+. |+..... .............++.  
T Consensus       165 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~-pf~~~~~-~~~~~~~~~~~~~~~~~~  242 (311)
T 3ork_A          165 AIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEP-PFTGDSP-VSVAYQHVREDPIPPSAR  242 (311)
T ss_dssp             -----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSC-SCCCSSH-HHHHHHHHHCCCCCHHHH
T ss_pred             cccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCC-CCCCCCh-HHHHHHHhcCCCCCcccc
Confidence            7654322  223345689999888765432           888  888 543 4332222 1111111222211110  


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HH-HHHHHHHHhh
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MV-DVAKKTQANV  288 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~-el~~~L~~l~  288 (292)
                      ....+..+.+++.+||+.||++|| +. ++.+.|..+.
T Consensus       243 ~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  280 (311)
T 3ork_A          243 HEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  280 (311)
T ss_dssp             STTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHh
Confidence            123567899999999999999999 54 4556666654

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=4.8e-35  Score=251.49  Aligned_cols=214  Identities=16%  Similarity=0.260  Sum_probs=172.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|.++..   .....+.+.+|..+++.++||||+++++++......++||||+
T Consensus        16 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~   88 (318)
T 1fot_A           16 TGSFGRVHLIRSRH-------NGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYI   88 (318)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCC
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCC
Confidence            89999999999875       8999999998643   1234567889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.++++       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.+|.+||+|||++.....
T Consensus        89 ~gg~L~~~l~-------~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~  158 (318)
T 1fot_A           89 EGGELFSLLR-------KSQRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD  158 (318)
T ss_dssp             CSCBHHHHHH-------HTSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSS
T ss_pred             CCCCHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCC
Confidence            9999999994       2346899999999999999999999   89999999999999999999999999999987643


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      .    .....||+.|++||.....           |++  ||+ |.. |+... .....+...+......+  ...++.+
T Consensus       159 ~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~-pf~~~-~~~~~~~~i~~~~~~~p--~~~~~~~  230 (318)
T 1fot_A          159 V----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYT-PFYDS-NTMKTYEKILNAELRFP--PFFNEDV  230 (318)
T ss_dssp             C----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSC-TTCCS-SHHHHHHHHHHCCCCCC--TTSCHHH
T ss_pred             c----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCC-CCCCC-CHHHHHHHHHhCCCCCC--CCCCHHH
Confidence            2    2345789999888764432           888  888 543 44332 22223333333333322  2556789


Q ss_pred             HHHHhHhcCCCCCCCC
Q 044211          261 AHLIFECVNESPVDRP  276 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP  276 (292)
                      .+++.+||+.||++||
T Consensus       231 ~~li~~lL~~dp~~R~  246 (318)
T 1fot_A          231 KDLLSRLITRDLSQRL  246 (318)
T ss_dssp             HHHHHHHTCSCTTTCT
T ss_pred             HHHHHHHhccCHHHcC
Confidence            9999999999999998

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=3.9e-35  Score=253.06  Aligned_cols=239  Identities=19%  Similarity=0.227  Sum_probs=178.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEE--EEEeecCC-CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPV--SVMKFDES-KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~v--aiK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       ++..+  |+|.++.. .......+.+|+.+++++ +||||+++++++...+..++||||
T Consensus        35 ~G~~g~Vy~~~~~~-------~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~  107 (327)
T 1fvr_A           35 EGNFGQVLKARIKK-------DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEY  107 (327)
T ss_dssp             CGGGCEEEEEEEEE-------TTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             cCCCceEEEEEEcc-------CCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEec
Confidence            99999999999864       66654  99998753 333446789999999999 899999999999999999999999


Q ss_pred             cCCCChhHHhhhhCC---------CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          114 INCGSLADRIRIHHT---------PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~---------~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                      +++|+|.+++.....         .......+++..++.++.|++.||.|||   +.+++|+||||+||+++.++.+||+
T Consensus       108 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kL~  184 (327)
T 1fvr_A          108 APHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIA  184 (327)
T ss_dssp             CTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEEC
T ss_pred             CCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCeEEEc
Confidence            999999999953210         0012357999999999999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCCccchhhhhcccccccccccCC------C-----CeE--EEcc-chhhhhhccchhhhcccccccCCCC
Q 044211          185 DFSFSISIPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       185 Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      |||++......  .......++..|.+|+....      +     |++  +|+. ...|+... ...........+.. .
T Consensus       185 Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~-~~~~~~~~~~~~~~-~  260 (327)
T 1fvr_A          185 DFGLSRGQEVY--VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM-TCAELYEKLPQGYR-L  260 (327)
T ss_dssp             CTTCEESSCEE--CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC-CHHHHHHHGGGTCC-C
T ss_pred             ccCcCcccccc--ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCC-cHHHHHHHhhcCCC-C
Confidence            99998744321  11233456778887775432      2     888  8873 55554332 22222222222211 1


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ..+..+++.+.+++.+||+.||++|| +.++++.|+.+...
T Consensus       261 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  301 (327)
T 1fvr_A          261 EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  301 (327)
T ss_dssp             CCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            12236677899999999999999999 99999999987653

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=4.2e-35  Score=249.27  Aligned_cols=233  Identities=13%  Similarity=0.060  Sum_probs=178.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....       +++.||+|.+....  ....+.+|+..++.+ +|+|++++++++......++||||+ +
T Consensus        20 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~   89 (298)
T 1csn_A           20 EGSFGVIFEGTNLL-------NNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-G   89 (298)
T ss_dssp             ECSSCEEEEEEETT-------TTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-C
T ss_pred             ecCCEEEEEEEECC-------CCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-C
Confidence            89999999999754       89999999986542  224578899999999 7999999999999999999999999 8


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc-----eEEeecccccc
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV-----AKLFDFSFSIS  191 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~-----~kl~Dfg~a~~  191 (292)
                      ++|.+++...      ...+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.     +||+|||++..
T Consensus        90 ~~L~~~l~~~------~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~  160 (298)
T 1csn_A           90 PSLEDLLDLC------GRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF  160 (298)
T ss_dssp             CBHHHHHHHT------TTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred             CCHHHHHHHh------ccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccc
Confidence            9999999432      346999999999999999999999   899999999999999987765     99999999987


Q ss_pred             cCCCCcc------chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc--chhhhcccccccCCC
Q 044211          192 IPEGETH------ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED--RLNEIIDPLIMGDRS  249 (292)
Q Consensus       192 ~~~~~~~------~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~--~~~~~~~~~~~~~~~  249 (292)
                      .......      ......||+.|++||.....           |++  +|+ |+. |+....  .....+........+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~-pf~~~~~~~~~~~~~~~~~~~~~  239 (298)
T 1csn_A          161 YRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSL-PWQGLKAATNKQKYERIGEKKQS  239 (298)
T ss_dssp             SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC-TTSSCCSCCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCC-CcchhhccccHHHHHHHHhhccC
Confidence            7543321      23456689999888765432           888  888 543 333211  111111111110000


Q ss_pred             CCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          250 CSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       250 ~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+.   ...+++.+.+++.+||+.||++|| +.+|++.|+++.+.
T Consensus       240 ~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~  284 (298)
T 1csn_A          240 TPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLER  284 (298)
T ss_dssp             SCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHh
Confidence            000   013466899999999999999999 99999999998754

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=2.5e-35  Score=256.61  Aligned_cols=218  Identities=15%  Similarity=0.209  Sum_probs=175.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|....       +++.||+|.++..   .......+..|..++..+ +||||+++++++...+..++||||
T Consensus        30 ~G~fg~V~~~~~~~-------~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~  102 (353)
T 2i0e_A           30 KGSFGKVMLSERKG-------TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEY  102 (353)
T ss_dssp             EETTEEEEEEEETT-------EEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeC
Confidence            89999999999975       7899999998653   223456788999999988 799999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++...       ..+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++....
T Consensus       103 ~~gg~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~  172 (353)
T 2i0e_A          103 VNGGDLMYHIQQV-------GRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  172 (353)
T ss_dssp             CCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred             CCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence            9999999999432       45899999999999999999999   8999999999999999999999999999998643


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......||+.|++||+....           |++  ||+ |+. |+.. ......+..........+.  ..++.
T Consensus       173 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~-Pf~~-~~~~~~~~~i~~~~~~~p~--~~s~~  247 (353)
T 2i0e_A          173 WDGV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQA-PFEG-EDEDELFQSIMEHNVAYPK--SMSKE  247 (353)
T ss_dssp             CTTC-CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSC-SSCC-SSHHHHHHHHHHCCCCCCT--TSCHH
T ss_pred             cCCc-ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCC-CCCC-CCHHHHHHHHHhCCCCCCC--CCCHH
Confidence            3222 23456799999988865432           888  888 654 4332 2333333333333333332  56778


Q ss_pred             HHHHHhHhcCCCCCCCC-H
Q 044211          260 FAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~  277 (292)
                      +.+|+.+||+.||.+|| +
T Consensus       248 ~~~li~~lL~~dP~~R~~~  266 (353)
T 2i0e_A          248 AVAICKGLMTKHPGKRLGC  266 (353)
T ss_dssp             HHHHHHHHTCSCTTSCTTC
T ss_pred             HHHHHHHHhhcCHHHcCCC
Confidence            99999999999999999 6

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=1e-34  Score=256.24  Aligned_cols=229  Identities=14%  Similarity=0.176  Sum_probs=173.9

Q ss_pred             cc--CCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IK--NGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G--~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|  +||.||+|.+..       +++.||||.++..  .......+.+|+.+++.++||||+++++++...+..++||||
T Consensus        35 ~G~~~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  107 (389)
T 3gni_B           35 KGFEDLMTVNLARYKP-------TGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSF  107 (389)
T ss_dssp             EETTTTEEEEEEEETT-------TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             CCcCCceEEEEEEEcC-------CCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEEEEc
Confidence            88  999999999976       8999999999754  233456788899999999999999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++...     ....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||.+....
T Consensus       108 ~~~~~L~~~l~~~-----~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~  179 (389)
T 3gni_B          108 MAYGSAKDLICTH-----FMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMI  179 (389)
T ss_dssp             CTTCBHHHHHHHT-----CTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred             cCCCCHHHHHhhh-----cccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence            9999999999533     2356899999999999999999999   8999999999999999999999999999986553


Q ss_pred             CCCc------cchhhhhcccccccccccCC--------C-----CeE--EEc-cchhhhhhccchhhhcccccccCC---
Q 044211          194 EGET------HISELLSGLRAFDLARLNED--------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR---  248 (292)
Q Consensus       194 ~~~~------~~~~~~~g~~~y~~~~~~~~--------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~---  248 (292)
                      ....      .......||..|++||....        +     |++  +|+ |+. |+........... .+.+..   
T Consensus       180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~~~~~~~~~~-~~~~~~~~~  257 (389)
T 3gni_B          180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHV-PFKDMPATQMLLE-KLNGTVPCL  257 (389)
T ss_dssp             ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSC-TTTTCCSTTHHHH-C--------
T ss_pred             cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHH-HhcCCCCcc
Confidence            2211      11233468888988876543        1     888  888 543 4333221111111 110000   


Q ss_pred             -----------------------------------------CCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          249 -----------------------------------------SCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       249 -----------------------------------------~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                                               ..+.+...++.+.+|+.+||+.||++|| +.|+++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h  334 (389)
T 3gni_B          258 LDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  334 (389)
T ss_dssp             ------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             ccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence                                                     0001123466799999999999999999 9999864

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=4.7e-35  Score=246.70  Aligned_cols=224  Identities=17%  Similarity=0.266  Sum_probs=162.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.+....   ....+.+.+|+.++++++||||+++++++...+..++|+||+
T Consensus        21 ~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   93 (278)
T 3cok_A           21 KGSFAGVYRAESIH-------TGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMC   93 (278)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CCCceEEEEEEEcc-------CCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEEecC
Confidence            89999999999865       89999999986431   223467899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.+++.      .....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.....
T Consensus        94 ~~~~L~~~l~------~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~  164 (278)
T 3cok_A           94 HNGEMNRYLK------NRVKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKM  164 (278)
T ss_dssp             TTEEHHHHHH------TCSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred             CCCcHHHHHh------hccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccC
Confidence            9999999994      23467899999999999999999999   89999999999999999999999999999987653


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ... ......|++.|++|+....      +     |++  +|+ |+. |+.. .................+  ...+..+
T Consensus       165 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~  239 (278)
T 3cok_A          165 PHE-KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRP-PFDT-DTVKNTLNKVVLADYEMP--SFLSIEA  239 (278)
T ss_dssp             ----------------------------CTHHHHHHHHHHHHHHSSC-SSCC-CSCC-----CCSSCCCCC--TTSCHHH
T ss_pred             CCC-cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCC-CCCC-hhHHHHHHHHhhcccCCc--cccCHHH
Confidence            322 1234568889988876543      2     888  888 543 3322 222222222222222222  2456789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+++.+||+.||++|| +.++++
T Consensus       240 ~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          240 KDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHcccCHhhCCCHHHHhc
Confidence            9999999999999999 999986

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=3.5e-35  Score=255.56  Aligned_cols=214  Identities=15%  Similarity=0.191  Sum_probs=174.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.++..   .......+.+|+.+++.++||||+++++++......++||||+
T Consensus        51 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  123 (350)
T 1rdq_E           51 TGSFGRVMLVKHKE-------SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV  123 (350)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cCcCcEEEEEEECC-------CCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCC
Confidence            89999999999875       8999999998643   2234567899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.+.       ..+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.....
T Consensus       124 ~gg~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~  193 (350)
T 1rdq_E          124 AGGEMFSHLRRI-------GRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG  193 (350)
T ss_dssp             TTCBHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             CCCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccC
Confidence            999999999533       45899999999999999999999   89999999999999999999999999999987754


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ..    ....||+.|++||.....           |++  ||+ |.. |+... .....+.....+....+  ...++.+
T Consensus       194 ~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~-Pf~~~-~~~~~~~~i~~~~~~~p--~~~~~~~  265 (350)
T 1rdq_E          194 RT----WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYP-PFFAD-QPIQIYEKIVSGKVRFP--SHFSSDL  265 (350)
T ss_dssp             CB----CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC-SSCCS-SHHHHHHHHHHCCCCCC--TTCCHHH
T ss_pred             Cc----ccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCC-CCCCC-CHHHHHHHHHcCCCCCC--CCCCHHH
Confidence            32    345789999888865432           888  888 543 44332 22333333333333333  2567789


Q ss_pred             HHHHhHhcCCCCCCCC
Q 044211          261 AHLIFECVNESPVDRP  276 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP  276 (292)
                      .+++.+||+.||.+||
T Consensus       266 ~~li~~lL~~dp~~R~  281 (350)
T 1rdq_E          266 KDLLRNLLQVDLTKRF  281 (350)
T ss_dssp             HHHHHHHSCSCTTTCT
T ss_pred             HHHHHHHhhcCHHhcc
Confidence            9999999999999999

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.5e-35  Score=253.53  Aligned_cols=217  Identities=19%  Similarity=0.210  Sum_probs=173.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--------chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--------RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l  109 (292)
                      +|+||.||+|.+..       +++.||+|.++....        .....+.+|+.++++++||||+++++++...+..++
T Consensus        34 ~G~~g~Vy~a~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~~~l  106 (335)
T 3dls_A           34 SGAFGFVWTAVDKE-------KNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQL  106 (335)
T ss_dssp             SSSSCSEEEEEETT-------TTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ecCCEEEEEEEECC-------CCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCEEEE
Confidence            89999999998765       899999999876421        122357789999999999999999999999999999


Q ss_pred             EEeccCCC-ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccc
Q 044211          110 VFEYINCG-SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSF  188 (292)
Q Consensus       110 v~e~~~~g-sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~  188 (292)
                      ||||+.+| +|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||+
T Consensus       107 v~e~~~~g~~l~~~~~-------~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~  176 (335)
T 3dls_A          107 VMEKHGSGLDLFAFID-------RHPRLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGS  176 (335)
T ss_dssp             EEECCTTSCBHHHHHH-------TCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred             EEEeCCCCccHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeeccc
Confidence            99998766 9999993       3456999999999999999999999   89999999999999999999999999999


Q ss_pred             ccccCCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCc
Q 044211          189 SISIPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       189 a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (292)
                      +........  .....||+.|++|+.....            |++  +|+ |.. |+....   .......    ..+  
T Consensus       177 a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~~~---~~~~~~~----~~~--  244 (335)
T 3dls_A          177 AAYLERGKL--FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEEN-PFCELE---ETVEAAI----HPP--  244 (335)
T ss_dssp             CEECCTTCC--BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSC-SCSSGG---GGTTTCC----CCS--
T ss_pred             ceECCCCCc--eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCC-chhhHH---HHHhhcc----CCC--
Confidence            987754432  2345689999888864322            888  888 543 443221   1111111    111  


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ...++.+.+|+.+||+.||++|| +.++++.
T Consensus       245 ~~~~~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          245 YLVSKELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             SCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             cccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            23556899999999999999999 9999875

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=1.3e-34  Score=248.09  Aligned_cols=225  Identities=16%  Similarity=0.126  Sum_probs=168.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+.        +++.||+|.+...  .......+.+|+.++++++||||+++++++...+..++||||++
T Consensus        31 ~G~~g~V~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  102 (311)
T 3niz_A           31 EGTYGVVYKAKDS--------QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFME  102 (311)
T ss_dssp             ECSSCEEEEEEET--------TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEECCS
T ss_pred             CCCCeEEEEEEEC--------CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcCCC
Confidence            8999999999996        8999999998654  22334678999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                       |+|.+++.      .....+++..+..++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||++......
T Consensus       103 -~~l~~~~~------~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~  172 (311)
T 3niz_A          103 -KDLKKVLD------ENKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIP  172 (311)
T ss_dssp             -EEHHHHHH------TCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSC
T ss_pred             -CCHHHHHH------hccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCC
Confidence             48888883      23456999999999999999999999   899999999999999999999999999999876433


Q ss_pred             CccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhh--cccccccCC----------
Q 044211          196 ETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEI--IDPLIMGDR----------  248 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~--~~~~~~~~~----------  248 (292)
                      .. ......||+.|++||.....            |++  +|+ |+. |+.........  +...+....          
T Consensus       173 ~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~-pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  250 (311)
T 3niz_A          173 VR-SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKP-LFPGVTDDDQLPKIFSILGTPNPREWPQVQEL  250 (311)
T ss_dssp             CC----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSC-SCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTS
T ss_pred             cc-cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHHCCCChHHhhhhhcc
Confidence            22 22345678999888864321            888  888 653 33221111000  000000000          


Q ss_pred             -----------CCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          249 -----------SCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       249 -----------~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                                 ....    .+..++.+.+|+.+||+.||++|| +.|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          251 PLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             HHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             chhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                       0000    012356789999999999999999 999986

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=5.6e-35  Score=257.96  Aligned_cols=225  Identities=14%  Similarity=0.214  Sum_probs=169.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcC--CCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMI--HRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||++...        +++.||||.+...  .......+.+|+.++++++  ||||+++++++...+..++||| 
T Consensus        66 ~G~fg~Vy~~~~~--------~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E-  136 (390)
T 2zmd_A           66 SGGSSKVFQVLNE--------KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-  136 (390)
T ss_dssp             CCSSEEEEEEECT--------TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE-
T ss_pred             cCCCeEEEEEEcC--------CCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe-
Confidence            8999999999986        7899999998654  3334577999999999996  5999999999999999999999 


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +.+++|.+++.       ....+++..+..++.|++.||.|||   ..+|+||||||+|||++ ++.+||+|||++..+.
T Consensus       137 ~~~~~L~~~l~-------~~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~  205 (390)
T 2zmd_A          137 CGNIDLNSWLK-------KKKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ  205 (390)
T ss_dssp             CCSEEHHHHHH-------HCSSCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC-
T ss_pred             cCCCCHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCcccccc
Confidence            56689999994       2346888999999999999999999   89999999999999996 5799999999998775


Q ss_pred             CCCcc-chhhhhcccccccccccCC-----------------C-----CeE--EEc-cchhhhhhccchhhhcccccccC
Q 044211          194 EGETH-ISELLSGLRAFDLARLNED-----------------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD  247 (292)
Q Consensus       194 ~~~~~-~~~~~~g~~~y~~~~~~~~-----------------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~  247 (292)
                      ..... ......||+.|++||+...                 +     |++  ||+ |.. |+.........+...+...
T Consensus       206 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~-Pf~~~~~~~~~~~~~~~~~  284 (390)
T 2zmd_A          206 PDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKT-PFQQIINQISKLHAIIDPN  284 (390)
T ss_dssp             --------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSC-TTTTCCCHHHHHHHHHCTT
T ss_pred             CCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCC-cchhhhHHHHHHHHHhCcc
Confidence            43322 2345679999999886531                 1     888  888 544 4433211111111112211


Q ss_pred             CCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          248 RSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       248 ~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .....+...+..+.+|+.+||+.||++|| +.|+++.
T Consensus       285 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h  321 (390)
T 2zmd_A          285 HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH  321 (390)
T ss_dssp             SCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccCCCCccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence            11111123356799999999999999999 9999864

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=3.6e-35  Score=248.91  Aligned_cols=238  Identities=20%  Similarity=0.275  Sum_probs=172.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+...    ...+..||+|.++..   .....+.+.+|+.++++++||||+++++++.... .++|+||+
T Consensus        28 ~G~~g~Vy~~~~~~~----~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~~v~e~~  102 (291)
T 1u46_A           28 DGSFGVVRRGEWDAP----SGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MKMVTELA  102 (291)
T ss_dssp             ----CCCEEEEEECT----TSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CEEEEECC
T ss_pred             CCCceeEEEEEeccC----CCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ceeeEecc
Confidence            899999999986310    002236999998754   3345578999999999999999999999998754 89999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++...      ...+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++.....
T Consensus       103 ~~~~L~~~l~~~------~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~  173 (291)
T 1u46_A          103 PLGSLLDRLRKH------QGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQ  173 (291)
T ss_dssp             TTCBHHHHHHHH------GGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC
T ss_pred             cCCCHHHHHHhc------cCCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEccccccccccc
Confidence            999999999532      345889999999999999999999   89999999999999999999999999999987754


Q ss_pred             CCcc--chhhhhcccccccccccCCC-----------CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          195 GETH--ISELLSGLRAFDLARLNEDD-----------GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       195 ~~~~--~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ....  ......++..|++|+.....           |++  +|+. ...|+... .....+..........+.+..++.
T Consensus       174 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  252 (291)
T 1u46_A          174 NDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL-NGSQILHKIDKEGERLPRPEDCPQ  252 (291)
T ss_dssp             -CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC-CHHHHHHHHHTSCCCCCCCTTCCH
T ss_pred             cccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC-CHHHHHHHHHccCCCCCCCcCcCH
Confidence            4322  22344567788887755322           888  7774 55555432 222222222222222223346778


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+.+++.+||+.||++|| +.++++.|+++...
T Consensus       253 ~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  285 (291)
T 1u46_A          253 DIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT  285 (291)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence            999999999999999999 99999999987654

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=1.5e-34  Score=246.59  Aligned_cols=225  Identities=19%  Similarity=0.253  Sum_probs=177.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....       +++.||+|.++... ....+.+.+|+.++++++||||+++++++......++||||+++
T Consensus        32 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~  104 (303)
T 3a7i_A           32 KGSFGEVFKGIDNR-------TQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGG  104 (303)
T ss_dssp             ECSSSEEEEEEETT-------TCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             ccCCeEEEEEEECC-------CCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCC
Confidence            89999999998865       88999999997543 34567899999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      ++|.+++        ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.......
T Consensus       105 ~~L~~~~--------~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~  173 (303)
T 3a7i_A          105 GSALDLL--------EPGPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ  173 (303)
T ss_dssp             EEHHHHH--------TTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB
T ss_pred             CcHHHHH--------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCccc
Confidence            9999999        2356899999999999999999999   8999999999999999999999999999998765433


Q ss_pred             ccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      . ......|+..|.+|+.....           |++  +|+ |.. |+..... ............+. .+..++..+.+
T Consensus       174 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~l~~  249 (303)
T 3a7i_A          174 I-KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEP-PHSELHP-MKVLFLIPKNNPPT-LEGNYSKPLKE  249 (303)
T ss_dssp             C-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC-TTTTSCH-HHHHHHHHHSCCCC-CCSSCCHHHHH
T ss_pred             c-ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCC-CCCCcCH-HHHHHHhhcCCCCC-CccccCHHHHH
Confidence            2 22345688889888765432           888  888 543 3332211 11111111111111 11355678999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHH
Q 044211          263 LIFECVNESPVDRP-MVDVAKKT  284 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L  284 (292)
                      ++.+||+.||++|| +.++++..
T Consensus       250 li~~~l~~dp~~Rps~~~ll~~~  272 (303)
T 3a7i_A          250 FVEACLNKEPSFRPTAKELLKHK  272 (303)
T ss_dssp             HHHHHCCSSGGGSCCHHHHTTCH
T ss_pred             HHHHHcCCChhhCcCHHHHhhCh
Confidence            99999999999999 99998753

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=8.4e-35  Score=272.11  Aligned_cols=236  Identities=17%  Similarity=0.214  Sum_probs=178.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..    ....+..||+|.++.... ...+.+.+|+.++++++||||+++++++. .+..++||||+++
T Consensus       400 ~G~fG~Vy~a~~~~----~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~lv~E~~~~  474 (656)
T 2j0j_A          400 EGQFGDVHQGIYMS----PENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTL  474 (656)
T ss_dssp             CCSSCCEEEEEECC----SSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCTT
T ss_pred             eCCCEEEEEEEEec----CCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEEEEEcCCC
Confidence            89999999998742    001346799999876433 34467999999999999999999999985 4568999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++..      ....+++..++.++.|++.||.|||   ..+++||||||+|||++.++.+||+|||++.......
T Consensus       475 g~L~~~l~~------~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~  545 (656)
T 2j0j_A          475 GELRSFLQV------RKFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST  545 (656)
T ss_dssp             CBHHHHHHH------TTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC--
T ss_pred             CcHHHHHHh------ccCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCeecCCCc
Confidence            999999942      2346899999999999999999999   8999999999999999999999999999998776544


Q ss_pred             ccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      ........+++.|++||....      +     |++  ||+ +...|+... ...+.+.....+... +.+..+++.+.+
T Consensus       546 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~-~~~~~~~~i~~~~~~-~~~~~~~~~l~~  623 (656)
T 2j0j_A          546 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV-KNNDVIGRIENGERL-PMPPNCPPTLYS  623 (656)
T ss_dssp             --------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-CHHHHHHHHHHTCCC-CCCTTCCHHHHH
T ss_pred             ceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHcCCCC-CCCccccHHHHH
Confidence            433444566788988876432      2     888  887 455454432 222222222222221 122467789999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      ++.+||+.||++|| +.++++.|+++.+
T Consensus       624 li~~~l~~dP~~RPs~~el~~~L~~il~  651 (656)
T 2j0j_A          624 LMTKCWAYDPSRRPRFTELKAQLSTILE  651 (656)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence            99999999999999 9999999999864

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.5e-35  Score=252.33  Aligned_cols=225  Identities=14%  Similarity=0.216  Sum_probs=168.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCC--CCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIH--RCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h--~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||++...        +++.||+|.+...  .....+.+.+|+.++++++|  +||+++++++...+..++|||+
T Consensus        19 ~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e~   90 (343)
T 3dbq_A           19 SGGSSKVFQVLNE--------KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMEC   90 (343)
T ss_dssp             CCSSEEEEEEECT--------TSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECC
T ss_pred             cCCCeEEEEEEeC--------CCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEeC
Confidence            8999999999986        8899999998754  33344678999999999986  9999999999999999999995


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                       .+|+|.+++.       ....+++..+..++.|++.||.|||   ..+|+||||||+|||++ ++.+||+|||++....
T Consensus        91 -~~~~L~~~l~-------~~~~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~  158 (343)
T 3dbq_A           91 -GNIDLNSWLK-------KKKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ  158 (343)
T ss_dssp             -CSEEHHHHHH-------HSCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC-
T ss_pred             -CCCCHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccC
Confidence             5689999994       3456899999999999999999999   89999999999999997 5789999999998775


Q ss_pred             CCCcc-chhhhhcccccccccccCC-----------------C-----CeE--EEc-cchhhhhhccchhhhcccccccC
Q 044211          194 EGETH-ISELLSGLRAFDLARLNED-----------------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD  247 (292)
Q Consensus       194 ~~~~~-~~~~~~g~~~y~~~~~~~~-----------------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~  247 (292)
                      ..... ......||+.|++||+...                 +     |++  +|+ |+. |+.........+...+...
T Consensus       159 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~-pf~~~~~~~~~~~~~~~~~  237 (343)
T 3dbq_A          159 PDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKT-PFQQIINQISKLHAIIDPN  237 (343)
T ss_dssp             -----------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSC-TTTTCCSHHHHHHHHHCTT
T ss_pred             cccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCC-cchhhhhHHHHHHHHhcCC
Confidence            43322 2345679999988887521                 1     888  888 544 4432211111111111111


Q ss_pred             CCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          248 RSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       248 ~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .....+...+..+.+|+.+||+.||.+|| +.|+++.
T Consensus       238 ~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          238 HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             SCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence            11111124456899999999999999999 9999865

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=1.7e-34  Score=246.50  Aligned_cols=224  Identities=17%  Similarity=0.208  Sum_probs=174.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||++....       +++.||+|.++.........+.+|+.++++++||||+++++++...+..++||||++++
T Consensus        19 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   91 (304)
T 2jam_A           19 SGAFSEVFLVKQRL-------TGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGG   91 (304)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             CCCCceEEEEEECC-------CCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCCCc
Confidence            89999999999865       89999999998664445567889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe---cCCCceEEeecccccccCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili---~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +|.+++..       ...+++..+..++.|++.||.|||   +.+++|+||+|+||++   +.++.+||+|||++.....
T Consensus        92 ~L~~~l~~-------~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~  161 (304)
T 2jam_A           92 ELFDRILE-------RGVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN  161 (304)
T ss_dssp             BHHHHHHH-------HSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCC
T ss_pred             cHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCC
Confidence            99999842       346899999999999999999999   8999999999999999   7788999999999976543


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCC--CCchHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC--SGNQQQLQ  258 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  258 (292)
                      .   ......|++.|++||.....           |++  +|+ |.. |+.... ..........+....  +.....++
T Consensus       162 ~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~  236 (304)
T 2jam_A          162 G---IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYP-PFYEET-ESKLFEKIKEGYYEFESPFWDDISE  236 (304)
T ss_dssp             B---TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSC-TTTTSC-HHHHHHHHHHCCCCCCTTTTTTSCH
T ss_pred             C---ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCC-CCCCCC-HHHHHHHHHcCCCCCCccccccCCH
Confidence            2   23445789999998876433           888  888 543 333221 122222222221111  11135677


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+.+++.+||+.||++|| +.++++.
T Consensus       237 ~~~~li~~~l~~dp~~Rps~~~~l~h  262 (304)
T 2jam_A          237 SAKDFICHLLEKDPNERYTCEKALSH  262 (304)
T ss_dssp             HHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            899999999999999999 9999863

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=6.4e-35  Score=253.36  Aligned_cols=234  Identities=16%  Similarity=0.153  Sum_probs=172.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-----CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-----KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||+|.+..       +++.||+|.+...     .....+.+.+|+.++++++||||+++++++...+..++|||
T Consensus        36 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  108 (345)
T 3hko_A           36 QGSYGVVRVAIENQ-------TRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVME  108 (345)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ecCCeEEEEEEECC-------CCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCeEEEEEe
Confidence            89999999999875       8899999998542     33456789999999999999999999999999999999999


Q ss_pred             ccCCCChhHHhhhhCCCC---------------------------------CCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 044211          113 YINCGSLADRIRIHHTPQ---------------------------------PQHEPLLLTHRLKIAMDIANAIAYLHVGF  159 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~---------------------------------~~~~~l~~~~~~~i~~~i~~~l~~lh~~~  159 (292)
                      |+++|+|.+++.......                                 .....+++..+..++.|++.||.|||   
T Consensus       109 ~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---  185 (345)
T 3hko_A          109 LCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLH---  185 (345)
T ss_dssp             CCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             CCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH---
Confidence            999999999984221100                                 01223467788899999999999999   


Q ss_pred             CCCcccCCCCCCceEecCCC--ceEEeecccccccCCC---CccchhhhhcccccccccccCC--------C-----CeE
Q 044211          160 PRPVIFRDFKLSNILFNEEN--VAKLFDFSFSISIPEG---ETHISELLSGLRAFDLARLNED--------D-----GYV  221 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~~--~~kl~Dfg~a~~~~~~---~~~~~~~~~g~~~y~~~~~~~~--------~-----Gvi  221 (292)
                      ..+++|+||||+||+++.++  .+||+|||++..+...   .........||+.|++||....        +     |++
T Consensus       186 ~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~i  265 (345)
T 3hko_A          186 NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVL  265 (345)
T ss_dssp             HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHH
T ss_pred             HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHH
Confidence            88999999999999998776  8999999999866432   2222345678999988876532        1     888


Q ss_pred             --EEc-cchhhhhhccchhhhcccccccCCCCCC--chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          222 --VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG--NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       222 --el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                        +|+ |+. |+.... ....+...+......+.  ....++.+.+|+.+||+.||.+|| +.++++.
T Consensus       266 l~el~~g~~-pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~h  331 (345)
T 3hko_A          266 LHLLLMGAV-PFPGVN-DADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQH  331 (345)
T ss_dssp             HHHHHHSSC-SSCCSS-HHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHHS
T ss_pred             HHHHHHCCC-CCCCCC-hHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence              888 544 433222 12222222222222111  124577899999999999999999 9999874

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=5.1e-35  Score=252.18  Aligned_cols=223  Identities=22%  Similarity=0.261  Sum_probs=161.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||+|.+...   ....+.+|+..++.+. ||||+++++++......++||||+++
T Consensus        21 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~   90 (325)
T 3kn6_A           21 EGSFSICRKCVHKK-------SNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNG   90 (325)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCC
Confidence            89999999999975       8999999999654   3456789999999997 99999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC---ceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN---VAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~---~~kl~Dfg~a~~~~  193 (292)
                      |+|.+++.       ....+++..+..++.|++.||.|||   +.+++||||||+|||++.++   .+||+|||++....
T Consensus        91 ~~L~~~l~-------~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~  160 (325)
T 3kn6_A           91 GELFERIK-------KKKHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKP  160 (325)
T ss_dssp             CBHHHHHH-------HCSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECC
T ss_pred             CcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecC
Confidence            99999994       3457999999999999999999999   89999999999999998765   89999999998665


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc------chhhhcccccccCCCCCCc
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED------RLNEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  253 (292)
                      ... .......||+.|++||.....           |++  +|+ |.. |+....      ...+.+.....+..+.+..
T Consensus       161 ~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~-pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  238 (325)
T 3kn6_A          161 PDN-QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQV-PFQSHDRSLTCTSAVEIMKKIKKGDFSFEGE  238 (325)
T ss_dssp             C-----------------------CCCCHHHHHHHHHHHHHHHHHSSC-TTC-------CCCHHHHHHHHTTTCCCCCSH
T ss_pred             CCC-CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCC-CCCCCccccccccHHHHHHHHHcCCCCCCcc
Confidence            432 223445689999988876433           888  888 544 332211      1122333333333333221


Q ss_pred             --hHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          254 --QQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       254 --~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                        ...++.+.+|+.+||+.||++|| +.++++
T Consensus       239 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          239 AWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             HHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred             cccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence              23577899999999999999999 998874

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=4.5e-35  Score=247.06  Aligned_cols=222  Identities=18%  Similarity=0.245  Sum_probs=172.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.+....   ......+.+|+.++++++||||+++++++......++||||+
T Consensus        19 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   91 (279)
T 3fdn_A           19 KGKFGNVYLAREKQ-------SKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYA   91 (279)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             cCCCeEEEEEEEcc-------CCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEEEecC
Confidence            89999999999875       78899999985431   123456889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++..       ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.....
T Consensus        92 ~~~~l~~~l~~-------~~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~  161 (279)
T 3fdn_A           92 PLGTVYRELQK-------LSKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS  161 (279)
T ss_dssp             TTEEHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC--
T ss_pred             CCCcHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCc
Confidence            99999999943       345899999999999999999999   89999999999999999999999999999865543


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ..   .....|+..|++|+.....           |++  +|+ |.. |+.. .................+  ...+..+
T Consensus       162 ~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~  234 (279)
T 3fdn_A          162 SR---RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP-PFEA-NTYQETYKRISRVEFTFP--DFVTEGA  234 (279)
T ss_dssp             ---------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSC-TTCC-SSHHHHHHHHHHTCCCCC--TTSCHHH
T ss_pred             cc---ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCC-CCCC-CcHHHHHHHHHhCCCCCC--CcCCHHH
Confidence            22   2345688899887764322           888  888 543 3322 222222222222222222  2456789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+|+.+||+.||++|| +.|+++.
T Consensus       235 ~~li~~~l~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          235 RDLISRLLKHNPSQRPMLREVLEH  258 (279)
T ss_dssp             HHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred             HHHHHHHhccChhhCCCHHHHhhC
Confidence            9999999999999999 9999875

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=3.8e-35  Score=250.09  Aligned_cols=226  Identities=15%  Similarity=0.169  Sum_probs=171.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       +++.||+|.+..........+.+|+.++++++||||+++++++...+..++||||++++
T Consensus        29 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~  101 (302)
T 2j7t_A           29 DGAFGKVYKAKNKE-------TGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGG  101 (302)
T ss_dssp             CSTTCCEEEEEETT-------TCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTTE
T ss_pred             cCCCeEEEEEEEcC-------CCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCCC
Confidence            89999999999975       78999999998766666788999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...      ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++....... 
T Consensus       102 ~l~~~~~~~------~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-  171 (302)
T 2j7t_A          102 AVDAIMLEL------DRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTL-  171 (302)
T ss_dssp             EHHHHHHHH------TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHH-
T ss_pred             cHHHHHHhh------ccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCccccccc-
Confidence            999998432      356899999999999999999999   8999999999999999999999999999976432111 


Q ss_pred             cchhhhhcccccccccccC-----------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCC-CCCCchHHH
Q 044211          198 HISELLSGLRAFDLARLNE-----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR-SCSGNQQQL  257 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  257 (292)
                      .......|+..|.+|+...           ++     |++  +|+ |.. |+..... ............ ....+..++
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  249 (302)
T 2j7t_A          172 QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEP-PHHELNP-MRVLLKIAKSDPPTLLTPSKWS  249 (302)
T ss_dssp             HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSC-TTTTSCH-HHHHHHHHHSCCCCCSSGGGSC
T ss_pred             cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCC-CCccCCH-HHHHHHHhccCCcccCCccccC
Confidence            1123356888898887541           12     888  888 543 3332221 111111122221 112234667


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ..+.+++.+||+.||++|| +.++++
T Consensus       250 ~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          250 VEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             HHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             HHHHHHHHHHcccChhhCCCHHHHhc
Confidence            7899999999999999999 999876

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=8.8e-35  Score=245.70  Aligned_cols=225  Identities=18%  Similarity=0.236  Sum_probs=175.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +++.||+|.+...  .......+.+|+.++++++||||+++++++...+..++||||++
T Consensus        16 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~   88 (284)
T 3kk8_A           16 KGAFSVVRRCVHKT-------TGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVT   88 (284)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             CcCCeEEEEEEEcC-------CCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEecCC
Confidence            89999999999875       8999999998653  33345678899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc---eEEeeccccccc
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV---AKLFDFSFSISI  192 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~---~kl~Dfg~a~~~  192 (292)
                      +++|.+.+.       ....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.   +||+|||++...
T Consensus        89 ~~~l~~~~~-------~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~  158 (284)
T 3kk8_A           89 GGELFEDIV-------AREFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV  158 (284)
T ss_dssp             SCBHHHHHH-------HHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred             CCCHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEc
Confidence            999998884       2356899999999999999999999   899999999999999986655   999999999776


Q ss_pred             CCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCC--CCCCchHH
Q 044211          193 PEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR--SCSGNQQQ  256 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  256 (292)
                      .....  .....|++.|++|+.....           |++  +|+ |+. |+.... ..........+..  +.+.....
T Consensus       159 ~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~-pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~  234 (284)
T 3kk8_A          159 NDSEA--WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYP-PFWDED-QHRLYAQIKAGAYDYPSPEWDTV  234 (284)
T ss_dssp             CSSCB--CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC-SSCCSS-HHHHHHHHHHTCCCCCTTTTTTS
T ss_pred             ccCcc--ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCC-CCCCCc-hhHHHHHHHhccccCCchhhccc
Confidence            54322  2345688999888764432           888  888 543 333222 1222221112211  11122356


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++.+.+++.+||+.||++|| +.|+++.
T Consensus       235 ~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (284)
T 3kk8_A          235 TPEAKSLIDSMLTVNPKKRITADQALKV  262 (284)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             CHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            77899999999999999999 9999874

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.5e-34  Score=248.77  Aligned_cols=225  Identities=15%  Similarity=0.200  Sum_probs=176.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc------chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP------RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||+|....       +++.||+|.++....      .....+.+|+.++++++||||+++++++...+..++||
T Consensus        22 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   94 (321)
T 2a2a_A           22 SGQFAIVKKCREKS-------TGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLIL   94 (321)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ecCCEEEEEEEECC-------CCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEE
Confidence            89999999999875       899999999865422      13567999999999999999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC----ceEEeecc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN----VAKLFDFS  187 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~----~~kl~Dfg  187 (292)
                      ||+++++|.+++.       ....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++    .+||+|||
T Consensus        95 e~~~~~~L~~~l~-------~~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg  164 (321)
T 2a2a_A           95 ELVSGGELFDFLA-------QKESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG  164 (321)
T ss_dssp             CCCCSCBHHHHHH-------TCSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCT
T ss_pred             EcCCCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCc
Confidence            9999999999993       3456899999999999999999999   89999999999999999887    79999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC-
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG-  252 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  252 (292)
                      ++........  .....|++.|++||.....           |++  +|+ |.. |+... .....+..........+. 
T Consensus       165 ~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~-~~~~~~~~i~~~~~~~~~~  240 (321)
T 2a2a_A          165 LAHEIEDGVE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGAS-PFLGD-TKQETLANITSVSYDFDEE  240 (321)
T ss_dssp             TCEECCTTCC--CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCC-SSCCS-SHHHHHHHHHTTCCCCCHH
T ss_pred             cceecCcccc--ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCC-CCCCC-CHHHHHHHHHhcccccChh
Confidence            9987754322  2345688999888765422           888  888 544 33322 112222222222211111 


Q ss_pred             -chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          253 -NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       253 -~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                       ....+..+.+++.+||+.||++|| +.|+++.
T Consensus       241 ~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h  273 (321)
T 2a2a_A          241 FFSHTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (321)
T ss_dssp             HHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred             hhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence             023456799999999999999999 9999863

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=250.37  Aligned_cols=232  Identities=17%  Similarity=0.238  Sum_probs=165.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeee--------cCCcce
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCL--------ETQIPI  108 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~--------~~~~~~  108 (292)
                      +|+||.||+|.+..       +++.||+|.+..........+.+|+..+.++. ||||+++++++.        .....+
T Consensus        38 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~  110 (337)
T 3ll6_A           38 EGGFAFVYEAQDVG-------SGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFL  110 (337)
T ss_dssp             CCSSEEEEEEEETT-------TCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEE
T ss_pred             cCCceEEEEEEECC-------CCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEE
Confidence            89999999999865       88999999987665566678999999999996 999999999984        234478


Q ss_pred             EEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--cccCCCCCCceEecCCCceEEeec
Q 044211          109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP--VIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       109 lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~--i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      +++||+. |+|.+++....    ....+++..++.++.|++.||.|||   ..+  ++|+||||+|||++.++.+||+||
T Consensus       111 lv~e~~~-g~L~~~l~~~~----~~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl~Df  182 (337)
T 3ll6_A          111 LLTELCK-GQLVEFLKKME----SRGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKLCDF  182 (337)
T ss_dssp             EEEECCS-EEHHHHHHHHH----TTCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred             EEEEecC-CCHHHHHHHhh----ccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEEecC
Confidence            9999997 69999985432    2456999999999999999999999   778  999999999999999999999999


Q ss_pred             ccccccCCCCccc-----------hhhhhcccccccccccC---------CC-----CeE--EEc-cchhhhhhccchhh
Q 044211          187 SFSISIPEGETHI-----------SELLSGLRAFDLARLNE---------DD-----GYV--VLL-DHIKKYFEEDRLNE  238 (292)
Q Consensus       187 g~a~~~~~~~~~~-----------~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~-~~~~~~~~~~~~~~  238 (292)
                      |++..........           .....|++.|++||...         ++     |++  +|+ |.. |+... ....
T Consensus       183 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~-p~~~~-~~~~  260 (337)
T 3ll6_A          183 GSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQH-PFEDG-AKLR  260 (337)
T ss_dssp             TTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSC-CC--------
T ss_pred             ccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCC-CCcch-hHHH
Confidence            9998765432211           12455889999988752         11     888  888 543 33322 2222


Q ss_pred             hcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          239 IIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .......    .+.....+..+.+|+.+||+.||++|| +.|+++.|+.+...
T Consensus       261 ~~~~~~~----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~  309 (337)
T 3ll6_A          261 IVNGKYS----IPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAA  309 (337)
T ss_dssp             -----CC----CCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hhcCccc----CCcccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence            2222111    111124455789999999999999999 99999999988653

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=1.5e-34  Score=262.36  Aligned_cols=226  Identities=16%  Similarity=0.200  Sum_probs=178.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+|....       +++.||+|.+...  .......+.+|+.++++++||||+++++++......++||||+.
T Consensus        32 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~  104 (486)
T 3mwu_A           32 KGSFGEVLKCKDRI-------TQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYT  104 (486)
T ss_dssp             CCSSSEEEEEEETT-------TCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             ecCCEEEEEEEECC-------CCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEcCC
Confidence            99999999999875       8999999998542  22345778999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec---CCCceEEeeccccccc
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN---EENVAKLFDFSFSISI  192 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~---~~~~~kl~Dfg~a~~~  192 (292)
                      +|+|.+.+..       ...+++..+..++.|++.||.|||   ..+|+||||||+|||++   .++.+||+|||++...
T Consensus       105 ~~~L~~~~~~-------~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~  174 (486)
T 3mwu_A          105 GGELFDEIIK-------RKRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF  174 (486)
T ss_dssp             SCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTB
T ss_pred             CCcHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeEC
Confidence            9999998842       346899999999999999999999   89999999999999995   4567999999999876


Q ss_pred             CCCCccchhhhhcccccccccccCCC----------CeE--EEccchhhhhhccchhhhcccccccCCCCC--CchHHHH
Q 044211          193 PEGETHISELLSGLRAFDLARLNEDD----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCS--GNQQQLQ  258 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~~----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  258 (292)
                      .....  .....||+.|++|++....          |++  +|+....|+... .....+.....+..+.+  .....++
T Consensus       175 ~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-~~~~~~~~i~~~~~~~~~~~~~~~s~  251 (486)
T 3mwu_A          175 QQNTK--MKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGK-NEYDILKRVETGKYAFDLPQWRTISD  251 (486)
T ss_dssp             CCC------CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCS-SHHHHHHHHHHTCCCSCSGGGGGSCH
T ss_pred             CCCCc--cCCCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHhCCCCCCCcccCCCCH
Confidence            54322  3345789999998876543          888  888333344332 22233333333332222  2235677


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+.+|+.+||+.||.+|| +.++++.
T Consensus       252 ~~~~li~~~L~~dp~~R~t~~~~l~h  277 (486)
T 3mwu_A          252 DAKDLIRKMLTFHPSLRITATQCLEH  277 (486)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            899999999999999999 9999874

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.2e-34  Score=262.76  Aligned_cols=226  Identities=16%  Similarity=0.179  Sum_probs=180.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||||.+....   ......+.+|+.++++++||||+++++++...+..++|+||+
T Consensus        36 ~G~~g~V~~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~  108 (484)
T 3nyv_A           36 KGSFGEVILCKDKI-------TGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVY  108 (484)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             cCCCEEEEEEEECC-------CCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecC
Confidence            89999999999876       89999999986532   334677999999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe---cCCCceEEeecccccc
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSIS  191 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili---~~~~~~kl~Dfg~a~~  191 (292)
                      .+|+|.+++.       ....+++..+..++.|++.||.|||   ..+|+||||||+|||+   +.++.+||+|||++..
T Consensus       109 ~~~~L~~~~~-------~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  178 (484)
T 3nyv_A          109 TGGELFDEII-------SRKRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTH  178 (484)
T ss_dssp             CSCBHHHHHH-------TCSCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred             CCCCHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence            9999999983       4457999999999999999999999   8999999999999999   4678999999999987


Q ss_pred             cCCCCccchhhhhcccccccccccCCC----------CeE--EEccchhhhhhccchhhhcccccccCCCC--CCchHHH
Q 044211          192 IPEGETHISELLSGLRAFDLARLNEDD----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSC--SGNQQQL  257 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~~~----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  257 (292)
                      +....  ......||+.|++|+.....          |++  +|+....|+... .....+.....+....  +.....+
T Consensus       179 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-~~~~~~~~i~~~~~~~~~~~~~~~s  255 (484)
T 3nyv_A          179 FEASK--KMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGA-NEYDILKKVEKGKYTFELPQWKKVS  255 (484)
T ss_dssp             BCCCC--SHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCS-SHHHHHHHHHHCCCCCCSGGGGGSC
T ss_pred             ccccc--ccccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHcCCCCCCCcccccCC
Confidence            75443  23456789999888764332          888  888333344332 2222333323332222  2223567


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+.+|+.+||+.||.+|| +.|+++.
T Consensus       256 ~~~~~li~~~L~~dp~~R~s~~e~l~h  282 (484)
T 3nyv_A          256 ESAKDLIRKMLTYVPSMRISARDALDH  282 (484)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence            8899999999999999999 9999864

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=3.1e-35  Score=257.81  Aligned_cols=224  Identities=17%  Similarity=0.196  Sum_probs=168.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHH-HHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVY-ASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~-l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|....       +++.||+|.++...   ......+..|..+ ++.++||||+++++++...+..++||||
T Consensus        48 ~G~fg~V~~~~~~~-------~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~  120 (373)
T 2r5t_A           48 KGSFGKVLLARHKA-------EEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDY  120 (373)
T ss_dssp             CCTTCEEEEEEETT-------TCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             eCCCeEEEEEEEcC-------CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeC
Confidence            99999999999975       88999999996532   2233456677776 5678999999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++.+       ...+++..+..++.|++.||.|||   ..+|+||||||+|||++.+|.+||+|||+++...
T Consensus       121 ~~gg~L~~~l~~-------~~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~  190 (373)
T 2r5t_A          121 INGGELFYHLQR-------ERCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENI  190 (373)
T ss_dssp             CCSCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGB
T ss_pred             CCCCcHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCccccccc
Confidence            999999999943       346889999999999999999999   8999999999999999999999999999998643


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ... .......||+.|++||+....           |++  ||+ |.. |+.. ....+..+..+......+  ...+..
T Consensus       191 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~-Pf~~-~~~~~~~~~i~~~~~~~~--~~~~~~  265 (373)
T 2r5t_A          191 EHN-STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLP-PFYS-RNTAEMYDNILNKPLQLK--PNITNS  265 (373)
T ss_dssp             CCC-CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC-TTCC-SBHHHHHHHHHHSCCCCC--SSSCHH
T ss_pred             cCC-CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCC-CCCC-CCHHHHHHHHHhcccCCC--CCCCHH
Confidence            322 223456799999988865433           888  888 543 4433 233333333333333222  256678


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+|+.+||+.||.+|| +.+.+..
T Consensus       266 ~~~li~~lL~~dp~~R~~~~~~~~~  290 (373)
T 2r5t_A          266 ARHLLEGLLQKDRTKRLGAKDDFME  290 (373)
T ss_dssp             HHHHHHHHTCSSGGGSTTTTTTHHH
T ss_pred             HHHHHHHHcccCHHhCCCCCCCHHH
Confidence            99999999999999999 8644333

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=1.9e-35  Score=263.86  Aligned_cols=228  Identities=16%  Similarity=0.129  Sum_probs=179.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.++..   .......+.+|..++..++||||+++++++...+..++||||+
T Consensus        84 ~G~fG~V~~~~~~~-------~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~  156 (437)
T 4aw2_A           84 RGAFGEVAVVKLKN-------ADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYY  156 (437)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCC
T ss_pred             eCCCEEEEEEEEcC-------CCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEecC
Confidence            99999999999975       7899999998642   1112234789999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++..      ....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||+++....
T Consensus       157 ~gg~L~~~l~~------~~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~  227 (437)
T 4aw2_A          157 VGGDLLTLLSK------FEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLME  227 (437)
T ss_dssp             TTCBHHHHHHT------TTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             CCCcHHHHHHH------ccCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhhhhccc
Confidence            99999999942      2457999999999999999999999   89999999999999999999999999999987766


Q ss_pred             CCccchhhhhcccccccccccC-----------CC-----CeE--EEc-cchhhhhhccchhhhccccccc--CCCCCC-
Q 044211          195 GETHISELLSGLRAFDLARLNE-----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMG--DRSCSG-  252 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-  252 (292)
                      +.........||+.|++||+..           ++     |++  ||+ |+. |+.... ..+.+...+..  ....+. 
T Consensus       228 ~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~-Pf~~~~-~~~~~~~i~~~~~~~~~p~~  305 (437)
T 4aw2_A          228 DGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGET-PFYAES-LVETYGKIMNHKERFQFPTQ  305 (437)
T ss_dssp             TSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSC-TTCCSS-HHHHHHHHHTHHHHCCCCSS
T ss_pred             CCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCC-CCCCCC-hhHHHHhhhhccccccCCcc
Confidence            5555455578999999988753           12     888  888 544 443322 22222222111  111111 


Q ss_pred             chHHHHHHHHHHhHhcCCCCCC--CC-HHHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVD--RP-MVDVAKK  283 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~--RP-~~el~~~  283 (292)
                      ....++.+.+||.+||..+|++  || +.|+++.
T Consensus       306 ~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H  339 (437)
T 4aw2_A          306 VTDVSENAKDLIRRLICSREHRLGQNGIEDFKKH  339 (437)
T ss_dssp             CCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred             cccCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence            1246778999999999998888  99 9998763

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=6.6e-35  Score=251.70  Aligned_cols=222  Identities=16%  Similarity=0.177  Sum_probs=163.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC----cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK----PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||++....    +..+++.||+|.++...    ......+.+|+.+++.++||||+++++++...+..++||||
T Consensus        27 ~G~~g~V~~~~~~~----~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  102 (327)
T 3a62_A           27 KGGYGKVFQVRKVT----GANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEY  102 (327)
T ss_dssp             EETTEEEEEEEECS----STTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             eCCCEEEEEEEEec----cCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEEEEEEeC
Confidence            89999999998730    01178999999997542    22345678999999999999999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++..       ...+++..+..++.|++.||.|||   ..+++||||||+|||++.++.+||+|||++....
T Consensus       103 ~~~~~L~~~l~~-------~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~  172 (327)
T 3a62_A          103 LSGGELFMQLER-------EGIFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESI  172 (327)
T ss_dssp             CTTEEHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC----
T ss_pred             CCCCcHHHHHHh-------CCCCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCcccccc
Confidence            999999999943       345889999999999999999999   8999999999999999999999999999997654


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......||+.|++||.....           |++  +|+ |.. |+.. ......+..........+  ...+..
T Consensus       173 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~-~~~~~~~~~i~~~~~~~p--~~~~~~  247 (327)
T 3a62_A          173 HDGT-VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAP-PFTG-ENRKKTIDKILKCKLNLP--PYLTQE  247 (327)
T ss_dssp             -------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSC-SCCC-SSHHHHHHHHHHTCCCCC--TTSCHH
T ss_pred             cCCc-cccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCC-CCCC-CCHHHHHHHHHhCCCCCC--CCCCHH
Confidence            3221 23345789999888865432           888  888 543 3332 222233333333333322  255678


Q ss_pred             HHHHHhHhcCCCCCCCC-HH
Q 044211          260 FAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~  278 (292)
                      +.+++.+||+.||++|| +.
T Consensus       248 ~~~li~~~L~~dp~~R~~~~  267 (327)
T 3a62_A          248 ARDLLKKLLKRNAASRLGAG  267 (327)
T ss_dssp             HHHHHHHHSCSCGGGSTTSS
T ss_pred             HHHHHHHHHhcCHhhccCCC
Confidence            99999999999999998 54

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=1.2e-34  Score=263.47  Aligned_cols=226  Identities=15%  Similarity=0.164  Sum_probs=174.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|....       ++..||+|.+....  ......+.+|+.+++.++||||+++++++......++||||+.
T Consensus        47 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~  119 (494)
T 3lij_A           47 SGAYGEVLLCRDKV-------THVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYK  119 (494)
T ss_dssp             CC---EEEEEEETT-------TCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             cCCCEEEEEEEECC-------CCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCC
Confidence            99999999999876       88999999987542  3345778999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC---CceEEeeccccccc
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE---NVAKLFDFSFSISI  192 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~---~~~kl~Dfg~a~~~  192 (292)
                      +|+|.+.+.       ....+++..+..++.|++.||.|||   +.+|+||||||+|||++.+   +.+||+|||++...
T Consensus       120 ~g~L~~~~~-------~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~  189 (494)
T 3lij_A          120 GGELFDEII-------HRMKFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVF  189 (494)
T ss_dssp             SCBHHHHHH-------HHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred             CCcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeEC
Confidence            999999884       2346899999999999999999999   8999999999999999764   55999999999877


Q ss_pred             CCCCccchhhhhcccccccccccCCC----------CeE--EEccchhhhhhccchhhhcccccccCCCCCC--chHHHH
Q 044211          193 PEGETHISELLSGLRAFDLARLNEDD----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSG--NQQQLQ  258 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~~----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  258 (292)
                      .....  .....||+.|++|++....          |++  +|+....|+.. ......+.....+....+.  ....++
T Consensus       190 ~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~-~~~~~~~~~i~~~~~~~~~~~~~~~s~  266 (494)
T 3lij_A          190 ENQKK--MKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGG-QTDQEILRKVEKGKYTFDSPEWKNVSE  266 (494)
T ss_dssp             BTTBC--BCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCC-SSHHHHHHHHHHTCCCCCSGGGTTSCH
T ss_pred             CCCcc--ccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCC-CCHHHHHHHHHhCCCCCCchhcccCCH
Confidence            54332  2345689999888765433          888  88833334332 2223333333333322221  134577


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+.+|+.+||+.||.+|| +.++++.
T Consensus       267 ~~~~li~~~L~~dp~~R~s~~e~l~h  292 (494)
T 3lij_A          267 GAKDLIKQMLQFDSQRRISAQQALEH  292 (494)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             HHHHHHHHHCCCChhhCccHHHHhcC
Confidence            899999999999999999 9998864

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=8.1e-35  Score=254.74  Aligned_cols=237  Identities=13%  Similarity=0.146  Sum_probs=170.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchH-----------HHHHHHHHHHHhcCCCCccceeeeeecC--
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTY-----------DCCINNIVYASQMIHRCIFKLIGCCLET--  104 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~-----------~~~~~e~~~l~~l~h~niv~~~~~~~~~--  104 (292)
                      +|+||.||+|.+..  ......++.||+|.+........           ..+..|+..++.++||||+++++++...  
T Consensus        45 ~G~~g~Vy~~~~~~--~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~  122 (364)
T 3op5_A           45 QGGFGCIYLADMNS--SESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKN  122 (364)
T ss_dssp             CC-CCEEEEEEECC--SSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEEEEET
T ss_pred             cCCCeEEEEeeecC--ccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeeeeccC
Confidence            89999999998852  00011357899999876532111           1234555667778899999999999764  


Q ss_pred             --CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec--CCCc
Q 044211          105 --QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN--EENV  180 (292)
Q Consensus       105 --~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~--~~~~  180 (292)
                        ...++||||+ +++|.+++..      ....+++..++.++.|++.||.|||   ..+|+||||||+|||++  .++.
T Consensus       123 ~~~~~~lv~e~~-g~~L~~~~~~------~~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~~~~~~  192 (364)
T 3op5_A          123 GKSYRFMIMDRF-GSDLQKIYEA------NAKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNYKNPDQ  192 (364)
T ss_dssp             TEEEEEEEEECE-EEEHHHHHHH------TTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEESSCTTC
T ss_pred             CcceEEEEEeCC-CCCHHHHHHh------ccCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEecCCCCe
Confidence              3479999999 8999999942      2357999999999999999999999   89999999999999999  8899


Q ss_pred             eEEeecccccccCCCCccc------hhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhc
Q 044211          181 AKLFDFSFSISIPEGETHI------SELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEII  240 (292)
Q Consensus       181 ~kl~Dfg~a~~~~~~~~~~------~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~  240 (292)
                      +||+|||+++.+.......      .....||+.|++|+.....           |++  ||+ |+. |+..........
T Consensus       193 ~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~-Pf~~~~~~~~~~  271 (364)
T 3op5_A          193 VYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHL-PWEDNLKDPKYV  271 (364)
T ss_dssp             EEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCC-TTGGGTTCHHHH
T ss_pred             EEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCC-CccccccCHHHH
Confidence            9999999998764332211      1334589999888765433           888  888 544 333211111100


Q ss_pred             -----------ccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          241 -----------DPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       241 -----------~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                                 ...+....+   ...++..+.+++..||+.||++|| +.+|++.|+++...
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~  330 (364)
T 3op5_A          272 RDSKIRYRENIASLMDKCFP---AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKA  330 (364)
T ss_dssp             HHHHHHHHHCHHHHHHHHSC---TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHhcc---cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence                       000000000   013466899999999999999999 99999999987653

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=1.3e-34  Score=258.03  Aligned_cols=226  Identities=17%  Similarity=0.199  Sum_probs=165.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--------cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--------PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l  109 (292)
                      +|+||.||+|....       +++.||+|.+....        ......+.+|+.++++++||||+++++++.. ...++
T Consensus       145 ~G~~g~V~~a~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-~~~~l  216 (419)
T 3i6u_A          145 SGACGEVKLAFERK-------TCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-EDYYI  216 (419)
T ss_dssp             ECSSSEEEEEEETT-------TCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-SEEEE
T ss_pred             eCCCeEEEEEEECC-------CCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-CceEE
Confidence            99999999999876       88999999986421        1112347899999999999999999999854 45799


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC---CceEEeec
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE---NVAKLFDF  186 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~---~~~kl~Df  186 (292)
                      ||||+++|+|.+++       .....+++..+..++.|++.||.|||   ..+++||||||+|||++.+   +.+||+||
T Consensus       217 v~e~~~~g~L~~~l-------~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~DF  286 (419)
T 3i6u_A          217 VLELMEGGELFDKV-------VGNKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDF  286 (419)
T ss_dssp             EEECCTTCBGGGGT-------SSSCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEECCS
T ss_pred             EEEcCCCCcHHHHH-------hccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEeec
Confidence            99999999999988       34567999999999999999999999   8899999999999999754   45999999


Q ss_pred             ccccccCCCCccchhhhhcccccccccccCC---------C-----CeE--EEccchhhhhhccchhhhcccccccCCCC
Q 044211          187 SFSISIPEGETHISELLSGLRAFDLARLNED---------D-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       187 g~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~---------~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      |++.......  ......||+.|++||+...         +     |++  +|+....|+..........+....+....
T Consensus       287 G~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~~  364 (419)
T 3i6u_A          287 GHSKILGETS--LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNF  364 (419)
T ss_dssp             STTTSCC-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCCC
T ss_pred             ccceecCCCc--cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCCC
Confidence            9998765432  2345678999999987531         1     888  88833334433222222222222222222


Q ss_pred             CC--chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          251 SG--NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       251 ~~--~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..  ....++.+.+++.+||+.||++|| +.|+++.
T Consensus       365 ~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  400 (419)
T 3i6u_A          365 IPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH  400 (419)
T ss_dssp             CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            11  013467899999999999999999 9998864

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=254.11  Aligned_cols=235  Identities=18%  Similarity=0.224  Sum_probs=180.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCC--cceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ--IPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~--~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||||.++... ....+.+.+|+.++++++||||+++++++...+  ..++||||+
T Consensus        19 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~   91 (396)
T 4eut_A           19 QGATANVFRGRHKK-------TGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFC   91 (396)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCC
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecC
Confidence            89999999999975       79999999997542 234567889999999999999999999998654  679999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe----cCCCceEEeeccccc
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF----NEENVAKLFDFSFSI  190 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili----~~~~~~kl~Dfg~a~  190 (292)
                      ++|+|.++++...    ....+++..++.++.|++.||.|||   ..+|+||||||+|||+    +.++.+||+|||++.
T Consensus        92 ~~g~L~~~l~~~~----~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~  164 (396)
T 4eut_A           92 PCGSLYTVLEEPS----NAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR  164 (396)
T ss_dssp             TTEEHHHHTTSGG----GTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred             CCCCHHHHHHhhh----cccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence            9999999994321    2334999999999999999999999   8999999999999999    777889999999998


Q ss_pred             ccCCCCccchhhhhcccccccccccC--------------CC-----CeE--EEc-cchhhhhhc---cchhhhcccccc
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNE--------------DD-----GYV--VLL-DHIKKYFEE---DRLNEIIDPLIM  245 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~--------------~~-----Gvi--el~-~~~~~~~~~---~~~~~~~~~~~~  245 (292)
                      .......  .....||..|++|+...              ++     |++  ||+ |+. |+...   ....+.+...+.
T Consensus       165 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~-Pf~~~~~~~~~~~~~~~~~~  241 (396)
T 4eut_A          165 ELEDDEQ--FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSL-PFRPFEGPRRNKEVMYKIIT  241 (396)
T ss_dssp             ECCCGGG--SSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSC-SEECTTCTTTCHHHHHHHHH
T ss_pred             EccCCCc--cccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCC-CCCCCCcccchHHHHHHHhc
Confidence            7754322  23456899998888643              12     888  888 654 33211   111111111111


Q ss_pred             cCC-----------------------CCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          246 GDR-----------------------SCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       246 ~~~-----------------------~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      +.+                       +.......+..+.+++.+||+.||++|| +.++++.++++..
T Consensus       242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~  309 (396)
T 4eut_A          242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH  309 (396)
T ss_dssp             SCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred             CCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence            111                       1111257788999999999999999999 9999999988764

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=1.2e-34  Score=246.14  Aligned_cols=224  Identities=19%  Similarity=0.222  Sum_probs=176.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++.+..       +++.||+|.+...   .....+.+.+|+.++++++||||+++++++...+..++||||+
T Consensus        25 ~G~~g~Vy~~~~~~-------~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   97 (294)
T 2rku_A           25 KGGFAKCFEISDAD-------TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELC   97 (294)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             ecCCEEEEEEEECC-------CCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecC
Confidence            89999999999975       7899999998653   2334567889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.+++..       ...+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++.....
T Consensus        98 ~~~~L~~~~~~-------~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~  167 (294)
T 2rku_A           98 RRRSLLELHKR-------RKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEY  167 (294)
T ss_dssp             TTCBHHHHHHH-------HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             CCCCHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceeccc
Confidence            99999999842       346899999999999999999999   89999999999999999999999999999987653


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ... ......|+..|.+|+.....           |++  +|+ |.. |+... ...+............+  ...++.+
T Consensus       168 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~-p~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~  242 (294)
T 2rku_A          168 DGE-RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKP-PFETS-CLKETYLRIKKNEYSIP--KHINPVA  242 (294)
T ss_dssp             TTC-CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSC-TTCCS-SHHHHHHHHHTTCCCCC--TTSCHHH
T ss_pred             Ccc-ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCC-CCCCC-CHHHHHHHHhhccCCCc--cccCHHH
Confidence            322 22345688899888765432           888  888 543 33221 22222222222222222  2556789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+++.+||+.||++|| +.++++.
T Consensus       243 ~~li~~~l~~~p~~Rps~~~ll~~  266 (294)
T 2rku_A          243 ASLIQKMLQTDPTARPTINELLND  266 (294)
T ss_dssp             HHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             HHHHHHHcccChhhCcCHHHHhhC
Confidence            9999999999999999 9998864

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.6e-34  Score=243.15  Aligned_cols=223  Identities=20%  Similarity=0.258  Sum_probs=169.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.+...   .......+.+|+..++.++||||+++++++...+..++|+||+
T Consensus        21 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   93 (276)
T 2h6d_A           21 VGTFGKVKIGEHQL-------TGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYV   93 (276)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CCCCeEEEEEEECC-------CCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEecc
Confidence            89999999999865       8999999998643   2234567899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.+++...       ..+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++.....
T Consensus        94 ~~~~L~~~l~~~-------~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~  163 (276)
T 2h6d_A           94 SGGELFDYICKH-------GRVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD  163 (276)
T ss_dssp             CSCBHHHHHHHH-------CSCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC
T ss_pred             CCCcHHHHHhcc-------CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCC
Confidence            999999999533       45899999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ...  .....|++.|.+|+.....            |++  +|+ |.. |+.. .......+....+....+  ...+..
T Consensus       164 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~-p~~~-~~~~~~~~~~~~~~~~~~--~~~~~~  237 (276)
T 2h6d_A          164 GEF--LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTL-PFDD-EHVPTLFKKIRGGVFYIP--EYLNRS  237 (276)
T ss_dssp             ---------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSC-SSCC-SSHHHHHHHHHHCCCCCC--TTSCHH
T ss_pred             Ccc--eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCC-CCCC-CcHHHHHHHhhcCcccCc--hhcCHH
Confidence            322  2345688899888875432            887  888 543 3322 222222222222222222  245678


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+++.+||+.||++|| +.++++.
T Consensus       238 l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          238 VATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHHccCChhhCCCHHHHHhC
Confidence            99999999999999999 9999874

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=3.6e-35  Score=263.66  Aligned_cols=217  Identities=15%  Similarity=0.202  Sum_probs=163.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.++..   .......+.+|+.+++.++||||+++++++...+..++||||+
T Consensus       158 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~  230 (446)
T 4ejn_A          158 KGTFGKVILVKEKA-------TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYA  230 (446)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEECCC
T ss_pred             eCcCEEEEEEEEcC-------CCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeC
Confidence            89999999999875       8999999998642   3334466889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP-RPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      ++|+|.+++..       ...+++..+..++.|++.||.|||   + .+|+||||||+|||++.++.+||+|||++....
T Consensus       231 ~~~~L~~~l~~-------~~~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~  300 (446)
T 4ejn_A          231 NGGELFFHLSR-------ERVFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGI  300 (446)
T ss_dssp             SSCBHHHHHHH-------HSCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTC
T ss_pred             CCCcHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCCEEEccCCCceecc
Confidence            99999999942       346899999999999999999999   7 899999999999999999999999999998654


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......||+.|++||+....           |++  ||+ |+. |+... ................+.  ..++.
T Consensus       301 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~-Pf~~~-~~~~~~~~i~~~~~~~p~--~~~~~  375 (446)
T 4ejn_A          301 KDGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL-PFYNQ-DHEKLFELILMEEIRFPR--TLGPE  375 (446)
T ss_dssp             C------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSC-SSCCS-SHHHHHHHHHHCCCCCCT--TSCHH
T ss_pred             CCCc-ccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCC-CCCCC-CHHHHHHHHHhCCCCCCc--cCCHH
Confidence            3222 23446799999888765322           888  888 543 43322 223333333333333332  56678


Q ss_pred             HHHHHhHhcCCCCCCCC
Q 044211          260 FAHLIFECVNESPVDRP  276 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP  276 (292)
                      +.+|+.+||+.||.+||
T Consensus       376 ~~~li~~~L~~dP~~R~  392 (446)
T 4ejn_A          376 AKSLLSGLLKKDPKQRL  392 (446)
T ss_dssp             HHHHHHHHTCSSTTTST
T ss_pred             HHHHHHHHcccCHHHhC
Confidence            99999999999999996

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.5e-34  Score=245.10  Aligned_cols=225  Identities=17%  Similarity=0.137  Sum_probs=168.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|...        +++.||+|.+.....  .....+.+|+.++++++||||+++++++...+..++||||+.
T Consensus        12 ~G~~g~V~~~~~~--------~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   83 (288)
T 1ob3_A           12 EGTYGVVYKAQNN--------YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLD   83 (288)
T ss_dssp             EETTEEEEEEEET--------TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCS
T ss_pred             cCCCEEEEEEEcC--------CCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecC
Confidence            7999999999985        899999999865432  234678899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      + +|.+++.      .....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++......
T Consensus        84 ~-~l~~~~~------~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  153 (288)
T 1ob3_A           84 Q-DLKKLLD------VCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP  153 (288)
T ss_dssp             E-EHHHHHH------TSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-
T ss_pred             C-CHHHHHH------hcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCcc
Confidence            5 9999984      22456899999999999999999999   899999999999999999999999999999876432


Q ss_pred             CccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhh---hc-----------------
Q 044211          196 ETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNE---II-----------------  240 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~---~~-----------------  240 (292)
                      .. ......||+.|++||....       +     |++  +|+ |.. |+........   +.                 
T Consensus       154 ~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (288)
T 1ob3_A          154 VR-KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTP-LFPGVSEADQLMRIFRILGTPNSKNWPNVTEL  231 (288)
T ss_dssp             ---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGS
T ss_pred             cc-ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHHCCCChhhchhhhcc
Confidence            21 2234567899988876432       1     888  888 653 3322111100   00                 


Q ss_pred             ---ccccccCCCCC---CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          241 ---DPLIMGDRSCS---GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       241 ---~~~~~~~~~~~---~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                         ++......+.+   .....++.+.+|+.+||+.||++|| +.|+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          232 PKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             TTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence               00000000000   0013567889999999999999999 999876

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.7e-34  Score=263.38  Aligned_cols=224  Identities=14%  Similarity=0.206  Sum_probs=177.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.+...   .......+.+|..++++++||||+++++++.....+++||||+
T Consensus       195 ~G~fG~Vy~a~~~~-------tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~  267 (543)
T 3c4z_A          195 RGGFGEVFACQMKA-------TGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIM  267 (543)
T ss_dssp             ECSSSEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             eCCCeEEEEEEECC-------CCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEec
Confidence            89999999999875       8999999998643   1233567889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++....   .....+++..+..++.||+.||.|||   +.+|+||||||+|||++.+|.+||+|||++..+..
T Consensus       268 ~gg~L~~~l~~~~---~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~  341 (543)
T 3c4z_A          268 NGGDIRYHIYNVD---EDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA  341 (543)
T ss_dssp             TTCBHHHHHHTSS---TTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             cCCCHHHHHHHhh---cccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence            9999999995332   23457999999999999999999999   89999999999999999999999999999987754


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc---chhhhcccccccCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED---RLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      .... .....||+.|++||+....           |++  ||+ |.. |+....   ....+...........+  ...+
T Consensus       342 ~~~~-~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~-PF~~~~~~~~~~~~~~~i~~~~~~~p--~~~s  417 (543)
T 3c4z_A          342 GQTK-TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARG-PFRARGEKVENKELKQRVLEQAVTYP--DKFS  417 (543)
T ss_dssp             TCCC-BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC-SSCCTTCCCCHHHHHHHHHHCCCCCC--TTSC
T ss_pred             CCcc-cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCC-CCCCCccchhHHHHHHHHhhcccCCC--cccC
Confidence            4322 2345799999888865433           888  888 544 443321   11222222233333222  3667


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HH
Q 044211          258 QAFAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~  278 (292)
                      +.+.+|+.+||+.||++|| +.
T Consensus       418 ~~~~~li~~lL~~dP~~R~~~~  439 (543)
T 3c4z_A          418 PASKDFCEALLQKDPEKRLGFR  439 (543)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCCB
T ss_pred             HHHHHHHHHhccCCHhHCCCCc
Confidence            7899999999999999999 73

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=5.9e-35  Score=255.18  Aligned_cols=225  Identities=17%  Similarity=0.228  Sum_probs=173.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||+|.++.. .......+.+|+.++++++||||+++++++...+..++||||+++
T Consensus        43 ~G~~g~V~~~~~~~-------~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~  115 (360)
T 3eqc_A           43 AGNGGVVFKVSHKP-------SGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDG  115 (360)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred             CCCCeEEEEEEECC-------CCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECCCC
Confidence            89999999999975       8999999999765 334456789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR-PVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~-~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      |+|.++++.       ...+++..+..++.|++.||.|||   .. +++|+||||+||+++.++.+||+|||++......
T Consensus       116 ~~L~~~l~~-------~~~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  185 (360)
T 3eqc_A          116 GSLDQVLKK-------AGRIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  185 (360)
T ss_dssp             CBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH
T ss_pred             CCHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc
Confidence            999999953       345899999999999999999999   64 8999999999999999999999999999765322


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccc--h-----------------------
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDR--L-----------------------  236 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~--~-----------------------  236 (292)
                         ......|++.|++|+.....           |++  +|+ |+. |+.....  .                       
T Consensus       186 ---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (360)
T 3eqc_A          186 ---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY-PIPPPDAKELELMFGCQVEGDAAETPPRPRTPG  261 (360)
T ss_dssp             ---C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSC-CSSCCCHHHHHHHHC------------------
T ss_pred             ---cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHhcccccccCCCCCCCcccCC
Confidence               12345788999888765433           888  888 653 2221110  0                       


Q ss_pred             ----------------hhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          237 ----------------NEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       237 ----------------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                      ....+.......+.......+..+.+|+.+||+.||++|| +.|+++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  325 (360)
T 3eqc_A          262 RPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH  325 (360)
T ss_dssp             ------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             CcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence                            0111111112222222224567899999999999999999 9999874

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1e-34  Score=251.31  Aligned_cols=224  Identities=19%  Similarity=0.223  Sum_probs=176.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++.+..       +++.||+|.+...   .....+.+.+|+.+++.++|+||+++++++...+..++||||+
T Consensus        51 ~G~~g~Vy~~~~~~-------~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  123 (335)
T 2owb_A           51 KGGFAKCFEISDAD-------TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELC  123 (335)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecC
Confidence            89999999999875       7889999998643   2334567899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+++|.+++..       ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.....
T Consensus       124 ~~~~L~~~~~~-------~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  193 (335)
T 2owb_A          124 RRRSLLELHKR-------RKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEY  193 (335)
T ss_dssp             TTCBHHHHHHH-------HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             CCCCHHHHHhc-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceeccc
Confidence            99999999842       346899999999999999999999   89999999999999999999999999999987653


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ... ......|+..|++||.....           |++  +|+ |.. ++.. ....+.+..........+  ...++.+
T Consensus       194 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~-~~~~~~~~~~~~~~~~~~--~~~~~~~  268 (335)
T 2owb_A          194 DGE-RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKP-PFET-SCLKETYLRIKKNEYSIP--KHINPVA  268 (335)
T ss_dssp             TTC-CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSC-TTCC-SSHHHHHHHHHHTCCCCC--TTSCHHH
T ss_pred             Ccc-cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcC-CCCC-CCHHHHHHHHhcCCCCCC--ccCCHHH
Confidence            322 22345688899888754322           888  888 543 3322 222222222222222222  2556689


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+|+.+||+.||++|| +.++++.
T Consensus       269 ~~li~~~l~~dp~~Rps~~ell~~  292 (335)
T 2owb_A          269 ASLIQKMLQTDPTARPTINELLND  292 (335)
T ss_dssp             HHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             HHHHHHHccCChhHCcCHHHHhcC
Confidence            9999999999999999 9998864

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=2.1e-34  Score=247.49  Aligned_cols=232  Identities=15%  Similarity=0.162  Sum_probs=170.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....       +++.||+|.++... ......+.+|+.++++++||||+++++++...+..++||||++ 
T Consensus        15 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-   86 (317)
T 2pmi_A           15 NGTYATVYKGLNKT-------TGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMD-   86 (317)
T ss_dssp             ----CEEEEEECSS-------SCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCC-
T ss_pred             CCCCEEEEEEEECC-------CCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecC-
Confidence            89999999999875       89999999987543 2344678899999999999999999999999999999999999 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++..... ......+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++.......
T Consensus        87 ~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~  162 (317)
T 2pmi_A           87 NDLKKYMDSRTV-GNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPV  162 (317)
T ss_dssp             CBHHHHHHHHHS-SSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCC
T ss_pred             CCHHHHHHhccc-cccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceecCCCc
Confidence            599999864321 123456899999999999999999999   8999999999999999999999999999998764322


Q ss_pred             ccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccch---hhhcc-----------------
Q 044211          197 THISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRL---NEIID-----------------  241 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~---~~~~~-----------------  241 (292)
                      . ......||+.|++||.....            |++  +|+ |+. |+......   ..+.+                 
T Consensus       163 ~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  240 (317)
T 2pmi_A          163 N-TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKP-LFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLP  240 (317)
T ss_dssp             C-CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCT
T ss_pred             c-cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCCChhHhhhhhhhh
Confidence            1 22345688999888864321            888  888 653 33221110   00000                 


Q ss_pred             ---cccccCCCCC--------CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 ---PLIMGDRSCS--------GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 ---~~~~~~~~~~--------~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                         +.+....+..        .....+..+.+|+.+||+.||++|| +.|+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h  294 (317)
T 2pmi_A          241 KYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH  294 (317)
T ss_dssp             TCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             hcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence               0000000000        0013456899999999999999999 9998763

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=9.3e-35  Score=244.95  Aligned_cols=233  Identities=14%  Similarity=0.154  Sum_probs=177.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv~e~  113 (292)
                      +|+||.||++....       +++.||+|.+....  ....+.+.+|+.++++++||||+++++++..  ....++||||
T Consensus        16 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~   88 (279)
T 2w5a_A           16 TGSYGRCQKIRRKS-------DGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEY   88 (279)
T ss_dssp             ECSSSEEEEEEETT-------TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCcEEEEEEECC-------CCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeC
Confidence            89999999999875       88999999997542  3345678999999999999999999998753  5678999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC-----cccCCCCCCceEecCCCceEEeeccc
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP-----VIFRDFKLSNILFNEENVAKLFDFSF  188 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~-----i~H~dlk~~nili~~~~~~kl~Dfg~  188 (292)
                      +++|+|.+++....   .....+++..++.++.|++.||.|||   ..+     ++|+||+|+||+++.++.+||+|||+
T Consensus        89 ~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~  162 (279)
T 2w5a_A           89 CEGGDLASVITKGT---KERQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGL  162 (279)
T ss_dssp             CTTEEHHHHHHHHH---HTTCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGGEEECSSSCEEECCCCH
T ss_pred             CCCCCHHHHHHhhc---ccCCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhhEEEcCCCCEEEecCch
Confidence            99999999996432   13456899999999999999999999   677     99999999999999999999999999


Q ss_pred             ccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCch
Q 044211          189 SISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       189 a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
                      +....... .......|+..|++||.....           |++  +|+ |.. |+... ...........+..+.. +.
T Consensus       163 ~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~-~~~~~~~~i~~~~~~~~-~~  238 (279)
T 2w5a_A          163 ARILNHDT-SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMP-PFTAF-SQKELAGKIREGKFRRI-PY  238 (279)
T ss_dssp             HHHC---C-HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSC-SSCCS-SHHHHHHHHHHTCCCCC-CT
T ss_pred             heeecccc-ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCC-CCccc-CHHHHHHHHhhcccccC-Cc
Confidence            98765432 223446788999888765432           888  888 543 33222 22222222222222111 13


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      .++..+.+++.+||+.||++|| +.++++.+...
T Consensus       239 ~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~  272 (279)
T 2w5a_A          239 RYSDELNEIITRMLNLKDYHRPSVEEILENPLIL  272 (279)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCC
T ss_pred             ccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhh
Confidence            5677899999999999999999 99999876543

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=261.55  Aligned_cols=226  Identities=15%  Similarity=0.121  Sum_probs=176.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||++....       +++.||+|+++..   .......+.+|..++..++||||+++++++...+.+++||||+
T Consensus        71 ~G~fG~V~~~~~~~-------~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~  143 (412)
T 2vd5_A           71 RGAFSEVAVVKMKQ-------TGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYY  143 (412)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCC
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEcCC
Confidence            99999999999875       8999999998642   1122345789999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.+.      +..+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.....
T Consensus       144 ~gg~L~~~l~~~------~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~  214 (412)
T 2vd5_A          144 VGGDLLTLLSKF------GERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRA  214 (412)
T ss_dssp             CSCBHHHHHHHH------SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             CCCcHHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechhheeccC
Confidence            999999999533      246899999999999999999999   89999999999999999999999999999988765


Q ss_pred             CCccchhhhhcccccccccccC-------------CC-----CeE--EEc-cchhhhhhccchhhhccccccc--CCCCC
Q 044211          195 GETHISELLSGLRAFDLARLNE-------------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMG--DRSCS  251 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~-------------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~  251 (292)
                      ..........||+.|++||+..             ++     |++  ||+ |+. |+.... ..+.+...+..  ....+
T Consensus       215 ~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~-Pf~~~~-~~~~~~~i~~~~~~~~~p  292 (412)
T 2vd5_A          215 DGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQT-PFYADS-TAETYGKIVHYKEHLSLP  292 (412)
T ss_dssp             TSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSC-TTCCSS-HHHHHHHHHTHHHHCCCC
T ss_pred             CCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCC-CCCCCC-HHHHHHHHHhcccCcCCC
Confidence            5444445568999999888653             12     888  888 644 443322 22222221111  01111


Q ss_pred             -CchHHHHHHHHHHhHhcCCCCCCC---C-HHHHHH
Q 044211          252 -GNQQQLQAFAHLIFECVNESPVDR---P-MVDVAK  282 (292)
Q Consensus       252 -~~~~~~~~l~~li~~Cl~~dP~~R---P-~~el~~  282 (292)
                       .....++.+.+||.+||. +|.+|   | +.|+++
T Consensus       293 ~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          293 LVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             ----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             ccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence             012456789999999999 99998   6 777764

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=3e-34  Score=245.92  Aligned_cols=225  Identities=19%  Similarity=0.253  Sum_probs=172.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       +++.||+|.+....  ....+.+|+.++++++||||+++++++...+..++||||+.++
T Consensus        39 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~  109 (314)
T 3com_A           39 EGSYGSVYKAIHKE-------TGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAG  109 (314)
T ss_dssp             ----CEEEEEEETT-------TCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTE
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCC
Confidence            89999999999875       79999999997643  3467899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++..      ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++........
T Consensus       110 ~L~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  180 (314)
T 3com_A          110 SVSDIIRL------RNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA  180 (314)
T ss_dssp             EHHHHHHH------HTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS
T ss_pred             CHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc
Confidence            99999942      2456899999999999999999999   89999999999999999999999999999987654322


Q ss_pred             cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                       ......|+..|.+|+....      +     |++  +|+ |.. |+......................+...+..+.++
T Consensus       181 -~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  258 (314)
T 3com_A          181 -KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKP-PYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDF  258 (314)
T ss_dssp             -CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSC-TTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHH
T ss_pred             -ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCC-CCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHH
Confidence             2234568888988776432      2     888  888 543 33332221111111011111111223456789999


Q ss_pred             HhHhcCCCCCCCC-HHHHHH
Q 044211          264 IFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+||+.||.+|| +.++++
T Consensus       259 i~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          259 VKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             HHHHTCSCTTTSCCHHHHTT
T ss_pred             HHHHccCChhhCcCHHHHHh
Confidence            9999999999999 999976

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=8.4e-35  Score=255.84  Aligned_cols=221  Identities=12%  Similarity=0.093  Sum_probs=161.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC---CCcchHHHHHHHH---HHHHhcCCCCcccee-------eeeecC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE---SKPRTYDCCINNI---VYASQMIHRCIFKLI-------GCCLET  104 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~---~~~~~~~~~~~e~---~~l~~l~h~niv~~~-------~~~~~~  104 (292)
                      +|+||.||+|.+..       +++.||||.+..   ......+.+.+|+   ..+++++||||++++       +++...
T Consensus        83 ~G~~g~V~~a~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~  155 (377)
T 3byv_A           83 QEDPYAYLEATDQE-------TGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDP  155 (377)
T ss_dssp             EETTEEEEEEEC-C-------CCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECT
T ss_pred             cCCCEEEEEEEECC-------CCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhcc
Confidence            89999999999864       899999999873   3334557789999   555566899999998       555544


Q ss_pred             C-----------------cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044211          105 Q-----------------IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRD  167 (292)
Q Consensus       105 ~-----------------~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~d  167 (292)
                      +                 ..++||||+. |+|.+++............+++..++.|+.|++.||.|||   +.+|+|||
T Consensus       156 ~~~~~~~~~~~~~~~~i~~~~lv~E~~~-g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrD  231 (377)
T 3byv_A          156 QKKKMIRVRLDERDMWVLSRFFLYPRMQ-SNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTY  231 (377)
T ss_dssp             TSCSEEEC------CEEESEEEEEECCS-EEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTEECSC
T ss_pred             CCccccccccCCCceEEEEEEEEEeccC-CCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCeecCC
Confidence            3                 2789999995 7999999654322222344556888899999999999999   89999999


Q ss_pred             CCCCceEecCCCceEEeecccccccCCCCccchhhhhccccccccccc-----------------CCC-----CeE--EE
Q 044211          168 FKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLN-----------------EDD-----GYV--VL  223 (292)
Q Consensus       168 lk~~nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~-----------------~~~-----Gvi--el  223 (292)
                      |||+|||++.++.+||+|||++.....    ......| +.|++||+.                 .++     |++  ||
T Consensus       232 ikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~el  306 (377)
T 3byv_A          232 LRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWI  306 (377)
T ss_dssp             CCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHH
T ss_pred             CCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHH
Confidence            999999999999999999999986432    2233456 888777653                 222     888  88


Q ss_pred             c-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          224 L-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       224 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      + |+. |+.... ............      ..+++.+.+|+.+||+.||++|| +.++++
T Consensus       307 ltg~~-Pf~~~~-~~~~~~~~~~~~------~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  359 (377)
T 3byv_A          307 WCADL-PITKDA-ALGGSEWIFRSC------KNIPQPVRALLEGFLRYPKEDRLLPLQAME  359 (377)
T ss_dssp             HHSSC-CC-------CCSGGGGSSC------CCCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred             HHCCC-CCcccc-cccchhhhhhhc------cCCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence            8 543 433222 222222222211      14456899999999999999999 999986

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=1.5e-34  Score=251.30  Aligned_cols=229  Identities=17%  Similarity=0.172  Sum_probs=174.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---ch--------------HHHHHHHHHHHHhcCCCCccceeee
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RT--------------YDCCINNIVYASQMIHRCIFKLIGC  100 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~--------------~~~~~~e~~~l~~l~h~niv~~~~~  100 (292)
                      +|+||.||+|.+         +++.||+|.+.....   ..              ...+.+|+.++++++||||++++++
T Consensus        41 ~G~~g~V~~~~~---------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~  111 (348)
T 2pml_X           41 QGKFNKIILCEK---------DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGI  111 (348)
T ss_dssp             CCSSCCEEEEEE---------TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEE
T ss_pred             CCCCeEEEEEEc---------CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEE
Confidence            899999999999         899999999864211   11              1779999999999999999999999


Q ss_pred             eecCCcceEEEeccCCCChhHHhhhhC-CCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCcccCCCCCCceEecCC
Q 044211          101 CLETQIPILVFEYINCGSLADRIRIHH-TPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP-RPVIFRDFKLSNILFNEE  178 (292)
Q Consensus       101 ~~~~~~~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-~~i~H~dlk~~nili~~~  178 (292)
                      +...+..++||||+++|+|.+++.... ........+++..+..++.|++.||.|||   . .+++|+||+|+||+++.+
T Consensus       112 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Nil~~~~  188 (348)
T 2pml_X          112 ITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNILMDKN  188 (348)
T ss_dssp             EESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGEEECTT
T ss_pred             EeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhEEEcCC
Confidence            999999999999999999999832110 01122578999999999999999999999   7 899999999999999999


Q ss_pred             CceEEeecccccccCCCCccchhhhhcccccccccccCCC-------------CeE--EEc-cchhhhhhccchhhhccc
Q 044211          179 NVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-------------GYV--VLL-DHIKKYFEEDRLNEIIDP  242 (292)
Q Consensus       179 ~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-------------Gvi--el~-~~~~~~~~~~~~~~~~~~  242 (292)
                      +.+||+|||++......   ......|+..|.+||.....             |++  +|+ |.. |+............
T Consensus       189 ~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~~~~~~~~  264 (348)
T 2pml_X          189 GRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVV-PFSLKISLVELFNN  264 (348)
T ss_dssp             SCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSC-SSCCSSCSHHHHHH
T ss_pred             CcEEEeccccccccccc---cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCC-CCCCCCcHHHHHHH
Confidence            99999999999876543   23345688889888765422             887  888 543 33322221222222


Q ss_pred             ccccCCCCCC-----------------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 LIMGDRSCSG-----------------NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 ~~~~~~~~~~-----------------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ...+....+.                 ....+..+.+|+.+||+.||.+|| +.|+++
T Consensus       265 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          265 IRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             HTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            2222111110                 024567899999999999999999 999986

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=2.4e-34  Score=249.55  Aligned_cols=223  Identities=20%  Similarity=0.244  Sum_probs=173.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|....       +++.||+|.++.....    ..+|+.++.++ +||||+++++++...+..++||||+++
T Consensus        32 ~G~~g~V~~~~~~~-------~~~~~avK~~~~~~~~----~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~g  100 (342)
T 2qr7_A           32 VGSYSVCKRCIHKA-------TNMEFAVKIIDKSKRD----PTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKG  100 (342)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEEETTTCC----CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEcccCC----hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCC
Confidence            89999999999876       8999999999765332    34688888888 799999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC----CceEEeeccccccc
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE----NVAKLFDFSFSISI  192 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~----~~~kl~Dfg~a~~~  192 (292)
                      |+|.+++.       ....+++..+..++.|++.||.|||   ..+|+||||||+|||+..+    +.+||+|||++...
T Consensus       101 g~L~~~i~-------~~~~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~  170 (342)
T 2qr7_A          101 GELLDKIL-------RQKFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQL  170 (342)
T ss_dssp             CBHHHHHH-------TCTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEEC
T ss_pred             CcHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccC
Confidence            99999993       3456999999999999999999999   8999999999999998543    35999999999876


Q ss_pred             CCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhc--cchhhhcccccccCCCCCC--ch
Q 044211          193 PEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEE--DRLNEIIDPLIMGDRSCSG--NQ  254 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~  254 (292)
                      ..... ......||+.|++||+....           |++  +|+ |.. |+...  ....+++.....+....+.  +.
T Consensus       171 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~-Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~  248 (342)
T 2qr7_A          171 RAENG-LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYT-PFANGPDDTPEEILARIGSGKFSLSGGYWN  248 (342)
T ss_dssp             BCTTC-CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SSCSSTTSCHHHHHHHHHHCCCCCCSTTTT
T ss_pred             cCCCC-ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCC-CCCCCCcCCHHHHHHHHccCCcccCccccc
Confidence            54322 22345789999888865322           888  888 544 44321  1222233322222222211  13


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..++.+.+|+.+||+.||++|| +.++++.
T Consensus       249 ~~s~~~~~li~~~L~~dP~~R~t~~~il~h  278 (342)
T 2qr7_A          249 SVSDTAKDLVSKMLHVDPHQRLTAALVLRH  278 (342)
T ss_dssp             TSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             cCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            5677899999999999999999 9998764

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=3.1e-34  Score=253.98  Aligned_cols=223  Identities=16%  Similarity=0.244  Sum_probs=164.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeec----CCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLE----TQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~----~~~~~lv~e  112 (292)
                      +|+||.||++.+..       +++.||||+++..     ..+.+|+.++.++ +||||+++++++..    ...+++|||
T Consensus        72 ~G~~g~V~~~~~~~-------~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E  139 (400)
T 1nxk_A           72 LGINGKVLQIFNKR-------TQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME  139 (400)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             eccCeEEEEEEECC-------CCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEE
Confidence            89999999999875       8999999999743     4567888887554 89999999999875    556899999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC---CCceEEeecccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE---ENVAKLFDFSFS  189 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~---~~~~kl~Dfg~a  189 (292)
                      |+++|+|.+++...     ....+++..+..++.|++.||.|||   ..+|+||||||+|||++.   ++.+||+|||++
T Consensus       140 ~~~gg~L~~~l~~~-----~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a  211 (400)
T 1nxk_A          140 CLDGGELFSRIQDR-----GDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  211 (400)
T ss_dssp             CCCSEEHHHHHHCC--------CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred             eCCCCcHHHHHHHh-----CCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEecccc
Confidence            99999999999421     2356999999999999999999999   899999999999999997   789999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchh---hhcccccccCCCC--
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLN---EIIDPLIMGDRSC--  250 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~---~~~~~~~~~~~~~--  250 (292)
                      .......  ......||+.|++||+....           |++  +|+ |+. |+.......   ........+....  
T Consensus       212 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~-pf~~~~~~~~~~~~~~~i~~~~~~~~~  288 (400)
T 1nxk_A          212 KETTSHN--SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYP-PFYSNHGLAISPGMKTRIRMGQYEFPN  288 (400)
T ss_dssp             EECC-------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSC-SCCCCTTCSSCCSHHHHHHHTCCCCCT
T ss_pred             cccCCCC--ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCC-CCCCCccccccHHHHHHHHcCcccCCC
Confidence            8765332  23456789999998876433           888  888 544 443322111   0111111122111  


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +....++..+.+||.+||+.||++|| +.++++.
T Consensus       289 ~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (400)
T 1nxk_A          289 PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  322 (400)
T ss_dssp             TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             cccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            11135677899999999999999999 9999875

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=2.2e-34  Score=243.44  Aligned_cols=222  Identities=18%  Similarity=0.196  Sum_probs=174.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.+...   .......+.+|+.++++++||||+++++++...+..++||||+
T Consensus        24 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   96 (284)
T 2vgo_A           24 KGKFGNVYLAREKQ-------NKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFA   96 (284)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             CCCCeEEEEEEEcC-------CCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEEEeC
Confidence            89999999999875       7889999998543   1223467899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++...       ..+++..+..++.|++.||.|||   +.+++|+||+|+||+++.++.+||+|||++.....
T Consensus        97 ~~~~L~~~l~~~-------~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~  166 (284)
T 2vgo_A           97 PRGELYKELQKH-------GRFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPS  166 (284)
T ss_dssp             TTEEHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSS
T ss_pred             CCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCcc
Confidence            999999999533       45899999999999999999999   89999999999999999999999999999876643


Q ss_pred             CCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ..   .....|+..|.+|+....      +     |++  +|+ |.. |+... ................+  ...+..+
T Consensus       167 ~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~-~~~~~~~~~~~~~~~~~--~~~~~~~  239 (284)
T 2vgo_A          167 LR---RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMP-PFDSP-SHTETHRRIVNVDLKFP--PFLSDGS  239 (284)
T ss_dssp             SC---BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSC-TTCCS-SHHHHHHHHHTTCCCCC--TTSCHHH
T ss_pred             cc---cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCC-CCCCC-CHhHHHHHHhccccCCC--CcCCHHH
Confidence            22   234568888987775432      2     888  888 543 33221 11111222222222222  2456789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+++.+||+.||.+|| +.++++.
T Consensus       240 ~~li~~~l~~~p~~Rps~~~ll~h  263 (284)
T 2vgo_A          240 KDLISKLLRYHPPQRLPLKGVMEH  263 (284)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred             HHHHHHHhhcCHhhCCCHHHHhhC
Confidence            9999999999999999 9999863

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=2.6e-34  Score=261.82  Aligned_cols=225  Identities=18%  Similarity=0.154  Sum_probs=175.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-------------chHHHHHHHHHHHHhcCCCCccceeeeeecC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-------------RTYDCCINNIVYASQMIHRCIFKLIGCCLET  104 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-------------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~  104 (292)
                      +|+||+||+|....       +++.||+|.+.....             ...+.+.+|+.++++++||||+++++++...
T Consensus        46 ~G~~g~V~~~~~~~-------~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  118 (504)
T 3q5i_A           46 SGAYGEVLLCKEKN-------GHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDK  118 (504)
T ss_dssp             C--CEEEEEEEETT-------TCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             ccCCeEEEEEEECC-------CCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            99999999999875       889999999865321             2346789999999999999999999999999


Q ss_pred             CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC---ce
Q 044211          105 QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN---VA  181 (292)
Q Consensus       105 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~---~~  181 (292)
                      ...++||||+++|+|.+++..       ...+++..+..++.|++.||.|||   ..+|+||||||+|||++.++   .+
T Consensus       119 ~~~~lv~e~~~gg~L~~~l~~-------~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~  188 (504)
T 3q5i_A          119 KYFYLVTEFYEGGELFEQIIN-------RHKFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNI  188 (504)
T ss_dssp             SEEEEEEECCTTCBHHHHHHH-------HSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSE
T ss_pred             CEEEEEEecCCCCcHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccE
Confidence            999999999999999999842       346999999999999999999999   89999999999999999775   69


Q ss_pred             EEeecccccccCCCCccchhhhhcccccccccccCCC----------CeE--EEc-cchhhhhhccchhhhcccccccCC
Q 044211          182 KLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR  248 (292)
Q Consensus       182 kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~  248 (292)
                      ||+|||++........  .....||+.|++|++....          |++  +|+ |.. |+.. ......+.....+..
T Consensus       189 kl~Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~-pf~~-~~~~~~~~~i~~~~~  264 (504)
T 3q5i_A          189 KIVDFGLSSFFSKDYK--LRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYP-PFGG-QNDQDIIKKVEKGKY  264 (504)
T ss_dssp             EECCCTTCEECCTTSC--BCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSC-SSCC-SSHHHHHHHHHHCCC
T ss_pred             EEEECCCCEEcCCCCc--cccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCC-CCCC-CCHHHHHHHHHcCCC
Confidence            9999999987754322  2345689999888775433          888  888 543 4332 233333333333333


Q ss_pred             CCCC--chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          249 SCSG--NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       249 ~~~~--~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+.  ....++.+.+|+.+||+.||.+|| +.|+++.
T Consensus       265 ~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h  302 (504)
T 3q5i_A          265 YFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNS  302 (504)
T ss_dssp             CCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            2221  123467899999999999999999 9998864

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=3e-34  Score=242.34  Aligned_cols=231  Identities=16%  Similarity=0.179  Sum_probs=175.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc------chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP------RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||+|....       +++.||+|.++....      ...+.+.+|+.++++++||||+++++++......++||
T Consensus        15 ~G~~g~V~~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   87 (283)
T 3bhy_A           15 SGQFAIVRKCRQKG-------TGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLIL   87 (283)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCceEEEEEEEcC-------CCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEEEEE
Confidence            89999999999875       789999999865321      23577999999999999999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC----ceEEeecc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN----VAKLFDFS  187 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~----~~kl~Dfg  187 (292)
                      ||+++++|.+++..       ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++    .+||+|||
T Consensus        88 e~~~~~~L~~~l~~-------~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg  157 (283)
T 3bhy_A           88 ELVSGGELFDFLAE-------KESLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFG  157 (283)
T ss_dssp             ECCCSCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCT
T ss_pred             eecCCCcHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEecc
Confidence            99999999999942       346899999999999999999999   89999999999999999877    79999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC-
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG-  252 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  252 (292)
                      ++........  .....|++.|.+|+.....           |++  +|+ |.. |+.... ...............+. 
T Consensus       158 ~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~~-~~~~~~~~~~~~~~~~~~  233 (283)
T 3bhy_A          158 IAHKIEAGNE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGAS-PFLGET-KQETLTNISAVNYDFDEE  233 (283)
T ss_dssp             TCEECC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC-TTCCSS-HHHHHHHHHTTCCCCCHH
T ss_pred             cceeccCCCc--ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCC-CCCCcc-hHHHHHHhHhcccCCcch
Confidence            9987654322  2345688899888765422           888  888 543 333221 11111111111111110 


Q ss_pred             -chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH--HHHHhhh
Q 044211          253 -NQQQLQAFAHLIFECVNESPVDRP-MVDVAK--KTQANVC  289 (292)
Q Consensus       253 -~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~--~L~~l~~  289 (292)
                       ....+..+.+++.+||+.||++|| +.++++  .++.++.
T Consensus       234 ~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~  274 (283)
T 3bhy_A          234 YFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRR  274 (283)
T ss_dssp             HHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHH
T ss_pred             hcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHH
Confidence             123456799999999999999999 999997  3565553

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=7.3e-34  Score=256.02  Aligned_cols=169  Identities=17%  Similarity=0.235  Sum_probs=131.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecC-----CcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET-----QIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-----~~~~lv  110 (292)
                      +|+||.||+|.+..       +++.||||.+...  .....+++.+|+.+|+.++||||+++++++...     ..+++|
T Consensus        63 ~G~~g~V~~~~~~~-------~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv  135 (458)
T 3rp9_A           63 TGSYGHVCEAYDKL-------EKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVV  135 (458)
T ss_dssp             -----CEEEEEECC---------CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEE
T ss_pred             ecCCeEEEEEEECC-------CCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEE
Confidence            89999999999875       8999999998654  233456799999999999999999999999543     468999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      |||+. |+|.++++       ....+++..+..++.||+.||.|||   ..+|+||||||+|||++.++.+||+|||+++
T Consensus       136 ~e~~~-~~L~~~~~-------~~~~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  204 (458)
T 3rp9_A          136 LEIAD-SDFKKLFR-------TPVYLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLAR  204 (458)
T ss_dssp             ECCCS-EEHHHHHH-------SSCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred             Eeccc-cchhhhcc-------cCCCCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccch
Confidence            99986 69999993       4567999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCc--------------------------cchhhhhccccccccccc--CCC----------CeE--EEc
Q 044211          191 SIPEGET--------------------------HISELLSGLRAFDLARLN--EDD----------GYV--VLL  224 (292)
Q Consensus       191 ~~~~~~~--------------------------~~~~~~~g~~~y~~~~~~--~~~----------Gvi--el~  224 (292)
                      .......                          .......||+.|++||+.  ...          ||+  ||+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ell  278 (458)
T 3rp9_A          205 TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELL  278 (458)
T ss_dssp             CTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHH
T ss_pred             hccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHH
Confidence            7643211                          112345689999999853  111          888  888

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=9.8e-34  Score=247.93  Aligned_cols=234  Identities=12%  Similarity=0.091  Sum_probs=176.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC---CCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI---HRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..  .....+++.||+|.++...   ..++..|..++..++   |+||+.+++++...+..++||||+
T Consensus        75 ~G~~g~Vy~~~~~~--~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~e~~  149 (365)
T 3e7e_A           75 EGAFAQVYEATQGD--LNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELY  149 (365)
T ss_dssp             ECSSEEEEEEEC---------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEECCC
T ss_pred             ccCCEEEEEEEecC--CcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEEecc
Confidence            89999999995310  0001178899999997653   456778888888876   999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-----------CCceEE
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-----------ENVAKL  183 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-----------~~~~kl  183 (292)
                      ++|+|.+++.....  .....+++..++.++.|++.||.|||   ..+|+||||||+|||++.           ++.+||
T Consensus       150 ~~g~L~~~l~~~~~--~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl  224 (365)
T 3e7e_A          150 SYGTLLNAINLYKN--TPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLAL  224 (365)
T ss_dssp             CSCBHHHHHHHHHT--STTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC------CTTEEE
T ss_pred             CCCcHHHHHHHhhc--ccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCccccccccCCEEE
Confidence            99999999964432  23567999999999999999999999   899999999999999998           899999


Q ss_pred             eecccccccCC-CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCC
Q 044211          184 FDFSFSISIPE-GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR  248 (292)
Q Consensus       184 ~Dfg~a~~~~~-~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~  248 (292)
                      +|||+|+.+.. ..........||..|++||+....           |++  ||+ |+. |+.............+... 
T Consensus       225 ~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~-pf~~~~~~~~~~~~~~~~~-  302 (365)
T 3e7e_A          225 IDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTY-MKVKNEGGECKPEGLFRRL-  302 (365)
T ss_dssp             CCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSC-CCEEEETTEEEECSCCTTC-
T ss_pred             eeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCC-ccccCCCCceeechhcccc-
Confidence            99999976532 122233456799999888865432           888  888 654 3333222111111111111 


Q ss_pred             CCCCchHHHHHHHHHHhHhcCCCCCCCC--HHHHHHHHHHhhh
Q 044211          249 SCSGNQQQLQAFAHLIFECVNESPVDRP--MVDVAKKTQANVC  289 (292)
Q Consensus       249 ~~~~~~~~~~~l~~li~~Cl~~dP~~RP--~~el~~~L~~l~~  289 (292)
                            .....+.+++..|++.+|.+||  +.++.+.|+++..
T Consensus       303 ------~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~  339 (365)
T 3e7e_A          303 ------PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQ  339 (365)
T ss_dssp             ------SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred             ------CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHH
Confidence                  1245678899999999999996  8888888877653

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=4e-34  Score=243.46  Aligned_cols=227  Identities=14%  Similarity=0.208  Sum_probs=165.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec-------------C
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE-------------T  104 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-------------~  104 (292)
                      +|+||.||+|....       +++.||+|.+... ....+.+.+|+.++++++||||+++++++..             .
T Consensus        16 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~   87 (303)
T 1zy4_A           16 QGAFGQVVKARNAL-------DSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKK   87 (303)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CE
T ss_pred             cCCcEEEEEEEEcC-------CCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccC
Confidence            89999999999865       8999999999653 2345678999999999999999999998864             3


Q ss_pred             CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          105 QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       105 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                      ...++||||+++|+|.+++..      ....+++..++.++.|++.||.|||   ..+++|+||+|+||+++.++.+||+
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~~kl~  158 (303)
T 1zy4_A           88 STLFIQMEYCENGTLYDLIHS------ENLNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIG  158 (303)
T ss_dssp             EEEEEEEECCCSCBHHHHHHH------SCGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEEC
T ss_pred             CceEEEEecCCCCCHHHhhhc------cccccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCCEEEe
Confidence            457899999999999999942      2456788999999999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCC-------------ccchhhhhcccccccccccCCC------------CeE--EEcc-chhhhhhccch
Q 044211          185 DFSFSISIPEGE-------------THISELLSGLRAFDLARLNEDD------------GYV--VLLD-HIKKYFEEDRL  236 (292)
Q Consensus       185 Dfg~a~~~~~~~-------------~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~~-~~~~~~~~~~~  236 (292)
                      |||++.......             ........|+..|.+|+.....            |++  +|+. ..... .....
T Consensus       159 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~p~~~~~-~~~~~  237 (303)
T 1zy4_A          159 DFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGM-ERVNI  237 (303)
T ss_dssp             CCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHSCCSSHH-HHHHH
T ss_pred             eCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHhccCCch-hHHHH
Confidence            999998664321             1122345688899888764321            887  7763 22111 11111


Q ss_pred             hhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          237 NEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ...+... ....+...+...+..+.+++.+||+.||++|| +.++++.
T Consensus       238 ~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  284 (303)
T 1zy4_A          238 LKKLRSV-SIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS  284 (303)
T ss_dssp             HHHHHST-TCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             HHhcccc-ccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence            1111111 11111111235567899999999999999999 9999864

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=2.1e-34  Score=252.16  Aligned_cols=224  Identities=18%  Similarity=0.261  Sum_probs=175.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--------chHHHHHHHHHHHHhc-CCCCccceeeeeecCCcce
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--------RTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPI  108 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~  108 (292)
                      .|+||.||+|.+..       +|+.||||++.....        ...+.+.+|+.+++++ +||||+++++++......+
T Consensus       104 ~G~~g~Vy~a~~~~-------~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~  176 (365)
T 2y7j_A          104 RGVSSVVRRCVHRA-------TGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMF  176 (365)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEE
T ss_pred             cCCCEEEEEEEECC-------CCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEE
Confidence            89999999999865       799999999875431        1134678999999999 7999999999999999999


Q ss_pred             EEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccc
Q 044211          109 LVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSF  188 (292)
Q Consensus       109 lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~  188 (292)
                      +||||+++++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||+
T Consensus       177 lv~e~~~g~~L~~~l~-------~~~~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~  246 (365)
T 2y7j_A          177 LVFDLMRKGELFDYLT-------EKVALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSDFGF  246 (365)
T ss_dssp             EEECCCTTCBHHHHHH-------HHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             EEEEeCCCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEecCc
Confidence            9999999999999994       2346899999999999999999999   89999999999999999999999999999


Q ss_pred             ccccCCCCccchhhhhccccccccccc------------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCC
Q 044211          189 SISIPEGETHISELLSGLRAFDLARLN------------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR  248 (292)
Q Consensus       189 a~~~~~~~~~~~~~~~g~~~y~~~~~~------------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~  248 (292)
                      +..+.....  .....||+.|++||+.            .++     |++  +|+ |.. |+.... ....+.....+..
T Consensus       247 ~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~-pf~~~~-~~~~~~~i~~~~~  322 (365)
T 2y7j_A          247 SCHLEPGEK--LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSP-PFWHRR-QILMLRMIMEGQY  322 (365)
T ss_dssp             CEECCTTCC--BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSC-SSCCSS-HHHHHHHHHHTCC
T ss_pred             ccccCCCcc--cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCC-CCCCCC-HHHHHHHHHhCCC
Confidence            987754332  2346789999888753            233     888  888 543 443322 1122222222222


Q ss_pred             CCCC--chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          249 SCSG--NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       249 ~~~~--~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ....  ....+..+.+++.+||+.||++|| +.++++
T Consensus       323 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          323 QFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             CCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            2111  013456799999999999999999 999986

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=5.1e-34  Score=246.16  Aligned_cols=228  Identities=16%  Similarity=0.162  Sum_probs=173.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.++..  .......+.+|+.++..+. ||||+++++++...+..++||||+
T Consensus        39 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~  111 (327)
T 3lm5_A           39 RGKFAVVRQCISKS-------TGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYA  111 (327)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CCCCeEEEEEEECC-------CCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEec
Confidence            89999999999875       8999999998753  2334577999999999994 699999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC---CCceEEeecccccc
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE---ENVAKLFDFSFSIS  191 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~---~~~~kl~Dfg~a~~  191 (292)
                      .+|+|.+++.     ......+++..+..++.|++.||.|||   ..+++|+||||+||+++.   ++.+||+|||++..
T Consensus       112 ~~~~L~~~~~-----~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~  183 (327)
T 3lm5_A          112 AGGEIFSLCL-----PELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRK  183 (327)
T ss_dssp             TTEEGGGGGS-----SCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEE
T ss_pred             CCCcHHHHHH-----HhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEeeCccccc
Confidence            9999999982     123467999999999999999999999   899999999999999997   78999999999987


Q ss_pred             cCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcc-cccccCCCCCCchHH
Q 044211          192 IPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIID-PLIMGDRSCSGNQQQ  256 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  256 (292)
                      ......  .....|++.|++|+.....           |++  +|+ |+. |+........... .......+......+
T Consensus       184 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~-pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  260 (327)
T 3lm5_A          184 IGHACE--LREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTS-PFVGEDNQETYLNISQVNVDYSEETFSSV  260 (327)
T ss_dssp             C-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC-SSCCSSHHHHHHHHHHTCCCCCTTTTTTS
T ss_pred             cCCccc--cccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCC-CCCCCCchHHHHHHHhcccccCchhhccc
Confidence            654322  2345789999888765422           888  888 543 3332221111100 011111222222356


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++.+.+++.+||+.||++|| +.++++.
T Consensus       261 ~~~~~~li~~~L~~dP~~Rpt~~~ll~h  288 (327)
T 3lm5_A          261 SQLATDFIQSLLVKNPEKRPTAEICLSH  288 (327)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence            77899999999999999999 9999764

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=3.4e-34  Score=243.79  Aligned_cols=224  Identities=18%  Similarity=0.239  Sum_probs=175.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---------chHHHHHHHHHHHHhcC-CCCccceeeeeecCCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---------RTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~  107 (292)
                      +|+||.||+|.+..       +++.||+|.++....         ...+.+.+|+.+++++. ||||+++++++...+..
T Consensus        27 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~   99 (298)
T 1phk_A           27 RGVSSVVRRCIHKP-------TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFF   99 (298)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CCCceEEEEEEEcC-------cCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCCeE
Confidence            89999999999975       889999999975431         12356889999999995 99999999999999999


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++||||+++++|.+++..       ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||
T Consensus       100 ~lv~e~~~~~~L~~~l~~-------~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg  169 (298)
T 1phk_A          100 FLVFDLMKKGELFDYLTE-------KVTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFG  169 (298)
T ss_dssp             EEEEECCTTCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             EEEEeccCCCcHHHHHhc-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEeccc
Confidence            999999999999999942       346899999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccC------------CC-----CeE--EEc-cchhhhhhccchhhhcccccccC
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNE------------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD  247 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~------------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~  247 (292)
                      ++........  .....|+..|.+|+...            ++     |++  +|+ |.. |+... ...........+.
T Consensus       170 ~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~-p~~~~-~~~~~~~~~~~~~  245 (298)
T 1phk_A          170 FSCQLDPGEK--LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSP-PFWHR-KQMLMLRMIMSGN  245 (298)
T ss_dssp             TCEECCTTCC--BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSC-SSCCS-SHHHHHHHHHHTC
T ss_pred             chhhcCCCcc--cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCC-CCcCc-cHHHHHHHHhcCC
Confidence            9987654332  23356788898887532            22     888  888 544 33222 1111111111222


Q ss_pred             CC--CCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          248 RS--CSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       248 ~~--~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ..  .+.....+..+.+++.+||+.||++|| +.++++
T Consensus       246 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          246 YQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             CCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             cccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence            11  112235677899999999999999999 999875

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=1.6e-34  Score=244.76  Aligned_cols=228  Identities=14%  Similarity=0.144  Sum_probs=163.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hH-HHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TY-DCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~-~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|....       +++.||+|.++..... .. ..+.++...++.++||||+++++++...+..++||||++
T Consensus        17 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   89 (290)
T 3fme_A           17 RGAYGVVEKMRHVP-------SGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMD   89 (290)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCS
T ss_pred             CCCCeEEEEEEecC-------CCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhc
Confidence            89999999999865       8999999999764222 22 334455556788899999999999999999999999998


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR-PVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~-~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                       |+|.+++....   .....+++..+..++.|++.||.|||   .. +++|+||||+||+++.++.+||+|||++.....
T Consensus        90 -~~l~~~l~~~~---~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  162 (290)
T 3fme_A           90 -TSLDKFYKQVI---DKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVD  162 (290)
T ss_dssp             -EEHHHHHHHHH---HTTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred             -cchHHHHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence             59988875322   23567999999999999999999999   77 999999999999999999999999999987654


Q ss_pred             CCccchhhhhcccccccccccC----C------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHH
Q 044211          195 GETHISELLSGLRAFDLARLNE----D------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQ  256 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~----~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (292)
                      ...  .....|++.|++|+...    .      +     |++  +|+ |+. |+.........+........+.......
T Consensus       163 ~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (290)
T 3fme_A          163 DVA--KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRF-PYDSWGTPFQQLKQVVEEPSPQLPADKF  239 (290)
T ss_dssp             ---------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSC-SSCCCSCHHHHHHHHHHSCCCCCCTTTS
T ss_pred             ccc--ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCC-CccccCchHHHHHHHhccCCCCcccccC
Confidence            322  23346899999888741    1      1     888  888 543 3332122222222222222222222356


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ++.+.+++.+||+.||++|| +.|+++
T Consensus       240 ~~~~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          240 SAEFVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence            77899999999999999999 999987

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=3.4e-34  Score=245.25  Aligned_cols=227  Identities=19%  Similarity=0.195  Sum_probs=167.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +++.||+|.+.....  ...+.+.+|+.++++++||||+++++++...+..++||||++
T Consensus        13 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (311)
T 4agu_A           13 EGSYGVVFKCRNRD-------TGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCD   85 (311)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             ecCCeEEEEEEeCC-------CCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeCC
Confidence            89999999999875       799999999865432  234668899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++.       ....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++......
T Consensus        86 ~~~l~~~~~-------~~~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  155 (311)
T 4agu_A           86 HTVLHELDR-------YQRGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGP  155 (311)
T ss_dssp             EEHHHHHHH-------TSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred             CchHHHHHh-------hhcCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc
Confidence            999998883       3456899999999999999999999   899999999999999999999999999999876533


Q ss_pred             CccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhh---------------------
Q 044211          196 ETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEI---------------------  239 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~---------------------  239 (292)
                      .. ......|+..|++|+....       +     |++  +|+ |.. |+.........                     
T Consensus       156 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (311)
T 4agu_A          156 SD-YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVP-LWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTN  233 (311)
T ss_dssp             -----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTC
T ss_pred             cc-ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhcccccccccccccc
Confidence            22 2234568889988875432       1     888  888 543 22221110000                     


Q ss_pred             --cccccccCCCCCC-----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          240 --IDPLIMGDRSCSG-----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       240 --~~~~~~~~~~~~~-----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                        ........+....     .+..+..+.+|+.+||+.||++|| +.|+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  285 (311)
T 4agu_A          234 QYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH  285 (311)
T ss_dssp             GGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred             cccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence              0000000000000     023456789999999999999999 9999864

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.2e-34  Score=255.71  Aligned_cols=225  Identities=20%  Similarity=0.231  Sum_probs=163.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcC-CCCccceeeeeecCC--cceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQ--IPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~--~~~lv~e  112 (292)
                      +|+||.||+|.+..       +++.||+|.+...  .......+.+|+.+++.+. ||||+++++++...+  ..++|||
T Consensus        19 ~G~~g~V~~~~~~~-------~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e   91 (388)
T 3oz6_A           19 KGAYGIVWKSIDRR-------TGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFD   91 (388)
T ss_dssp             -----CEEEEEETT-------TCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEE
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEec
Confidence            89999999999875       8999999998653  3344567889999999997 999999999997544  6899999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+. |+|.++++        ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+++.+
T Consensus        92 ~~~-~~L~~~~~--------~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~  159 (388)
T 3oz6_A           92 YME-TDLHAVIR--------ANILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSF  159 (388)
T ss_dssp             CCS-EEHHHHHH--------HTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEES
T ss_pred             ccC-cCHHHHHH--------cCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCcccccc
Confidence            998 59999993        246899999999999999999999   899999999999999999999999999999866


Q ss_pred             CCCC--------------------ccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchh
Q 044211          193 PEGE--------------------THISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLN  237 (292)
Q Consensus       193 ~~~~--------------------~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~  237 (292)
                      ....                    ........||+.|++||+....            |++  ||+ |+. |+.......
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~-pf~~~~~~~  238 (388)
T 3oz6_A          160 VNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKP-IFPGSSTMN  238 (388)
T ss_dssp             SSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHH
T ss_pred             cccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCC-CCCCCCHHH
Confidence            4311                    1112345789999888865331            888  888 643 332221111


Q ss_pred             hhcccccc--cCC-----------------------------CCC--------------CchHHHHHHHHHHhHhcCCCC
Q 044211          238 EIIDPLIM--GDR-----------------------------SCS--------------GNQQQLQAFAHLIFECVNESP  272 (292)
Q Consensus       238 ~~~~~~~~--~~~-----------------------------~~~--------------~~~~~~~~l~~li~~Cl~~dP  272 (292)
                      . +...+.  +.+                             ...              ....+++.+.+|+.+||+.||
T Consensus       239 ~-~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP  317 (388)
T 3oz6_A          239 Q-LERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNP  317 (388)
T ss_dssp             H-HHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSG
T ss_pred             H-HHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCc
Confidence            0 000000  000                             000              001345689999999999999


Q ss_pred             CCCC-HHHHHHH
Q 044211          273 VDRP-MVDVAKK  283 (292)
Q Consensus       273 ~~RP-~~el~~~  283 (292)
                      ++|| +.|+++.
T Consensus       318 ~~R~t~~e~l~H  329 (388)
T 3oz6_A          318 NKRISANDALKH  329 (388)
T ss_dssp             GGSCCHHHHTTS
T ss_pred             ccCCCHHHHhCC
Confidence            9999 9999865

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=9.7e-34  Score=253.30  Aligned_cols=169  Identities=18%  Similarity=0.238  Sum_probs=139.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecC-----CcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET-----QIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-----~~~~lv  110 (292)
                      +|+||.||+|.+..       +++.||||.++..  .....+++.+|+.++++++||||+++++++...     ...++|
T Consensus        36 ~G~~g~V~~a~~~~-------~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv  108 (432)
T 3n9x_A           36 RGSYGYVYLAYDKN-------TEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIV  108 (432)
T ss_dssp             EETTEEEEEEEETT-------TTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEE
T ss_pred             ecCCEEEEEEEECC-------CCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEE
Confidence            89999999999875       8999999999764  233456799999999999999999999999865     568999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      |||+. |+|.++++       ....+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+++
T Consensus       109 ~e~~~-~~L~~~~~-------~~~~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~  177 (432)
T 3n9x_A          109 LEIAD-SDLKKLFK-------TPIFLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLAR  177 (432)
T ss_dssp             EECCS-EEHHHHHH-------SSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             EecCC-cCHHHHHh-------ccCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcc
Confidence            99998 59999993       4567999999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCcc---------------------chhhhhccccccccccc--CCC----------CeE--EEc
Q 044211          191 SIPEGETH---------------------ISELLSGLRAFDLARLN--EDD----------GYV--VLL  224 (292)
Q Consensus       191 ~~~~~~~~---------------------~~~~~~g~~~y~~~~~~--~~~----------Gvi--el~  224 (292)
                      ........                     ......||+.|++||+.  ...          |++  ||+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell  246 (432)
T 3n9x_A          178 TINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELL  246 (432)
T ss_dssp             EC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHH
Confidence            77543211                     12456789999999853  211          888  888

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=6.7e-34  Score=256.28  Aligned_cols=223  Identities=16%  Similarity=0.216  Sum_probs=163.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC------cceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ------IPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~l  109 (292)
                      +|+||.||+|....       +++.||||.+...  .....+++.+|+.+++.++||||+++++++....      ..++
T Consensus        72 ~G~~g~V~~a~~~~-------~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~l  144 (464)
T 3ttj_A           72 SGAQGIVCAAYDAV-------LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYL  144 (464)
T ss_dssp             ECSSCEEEEEEETT-------TTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEE
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEE
Confidence            89999999999875       8999999999754  3344567899999999999999999999997653      4699


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ||||+.+ +|.+.+         ...+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.+||+|||++
T Consensus       145 v~E~~~~-~l~~~~---------~~~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a  211 (464)
T 3ttj_A          145 VMELMDA-NLCQVI---------QMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA  211 (464)
T ss_dssp             EEECCSE-EHHHHH---------TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC
T ss_pred             EEeCCCC-CHHHHH---------hhcCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEee
Confidence            9999985 677777         234899999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhh---hcc-----------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNE---IID-----------  241 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~---~~~-----------  241 (292)
                      +......  ......||+.|++||+...      +     |++  ||+ |+. ++........   ++.           
T Consensus       212 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~-pF~g~~~~~~~~~i~~~lg~p~~~~~~  288 (464)
T 3ttj_A          212 RTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKI-LFPGRDYIDQWNKVIEQLGTPCPEFMK  288 (464)
T ss_dssp             -----CC--CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSC-SSCCSSHHHHHHHHHHHHCSCCHHHHT
T ss_pred             eecCCCc--ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence            8765432  2344678999988876433      2     888  888 543 3322111000   000           


Q ss_pred             -------cccccCCC----------------CCC--chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 -------PLIMGDRS----------------CSG--NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 -------~~~~~~~~----------------~~~--~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                             ..+...+.                ...  ....++.+.+|+.+||+.||++|| +.|+++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          289 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             TSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                   00000000                000  011267799999999999999999 9999864

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=3.4e-34  Score=243.35  Aligned_cols=233  Identities=17%  Similarity=0.147  Sum_probs=173.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeee-ecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCC-LETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~-~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||+|.+.....  ...+.+|+.+++.++|++++..++.+ ...+..++||||+ +
T Consensus        19 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~   88 (296)
T 4hgt_A           19 SGSFGDIYLGTDIA-------AGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-G   88 (296)
T ss_dssp             ECSSSEEEEEEETT-------TTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-C
T ss_pred             CCCCeEEEEEEEcC-------CCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc-C
Confidence            89999999999765       899999998765422  23477899999999988877766666 4566789999999 7


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe---cCCCceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili---~~~~~~kl~Dfg~a~~~~  193 (292)
                      ++|.+++..      ....+++..+..++.|++.||.|||   +.+++|+||||+|||+   +.++.+||+|||++....
T Consensus        89 ~~L~~~~~~------~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~  159 (296)
T 4hgt_A           89 PSLEDLFNF------CSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR  159 (296)
T ss_dssp             CBHHHHHHH------TTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred             CCHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccceecc
Confidence            899999942      2456999999999999999999999   8999999999999999   788999999999998775


Q ss_pred             CCCc------cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccc--hhhhcccccccCCCCC
Q 044211          194 EGET------HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDR--LNEIIDPLIMGDRSCS  251 (292)
Q Consensus       194 ~~~~------~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~  251 (292)
                      ....      .......||..|++|+.....           |++  +|+ |+. |+.....  ....+........+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~  238 (296)
T 4hgt_A          160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSL-PWQGLKAATKRQKYERISEKKMSTP  238 (296)
T ss_dssp             CTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC-TTSSCCCSSSSSHHHHHHHHHHHSC
T ss_pred             CcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCC-CCcccchhhhhhhhhhhhcccccch
Confidence            4432      123356789999888765432           888  888 544 4332111  1111111111110000


Q ss_pred             C---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          252 G---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       252 ~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .   ...+++.+.+++.+||+.||++|| +.++++.|+++.++
T Consensus       239 ~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~  281 (296)
T 4hgt_A          239 IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR  281 (296)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence            0   013356899999999999999999 99999999997653

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=9.8e-35  Score=252.44  Aligned_cols=235  Identities=14%  Similarity=0.132  Sum_probs=168.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcch-----------HHHHHHHHHHHHhcCCCCccceeeeeec---
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRT-----------YDCCINNIVYASQMIHRCIFKLIGCCLE---  103 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~-----------~~~~~~e~~~l~~l~h~niv~~~~~~~~---  103 (292)
                      +|+||.||+|.+..    ...++..||+|.+.......           ...+.+|+..++.++||||+++++++..   
T Consensus        47 ~G~~g~Vy~~~~~~----~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~~  122 (345)
T 2v62_A           47 SGGFGLIYLAFPTN----KPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFK  122 (345)
T ss_dssp             -----CEEEEEESS----SCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEESS
T ss_pred             ecCCeEEEEEEecC----CCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecccccccC
Confidence            89999999999841    01146789999987653321           1236678888999999999999999987   


Q ss_pred             -CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC--c
Q 044211          104 -TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN--V  180 (292)
Q Consensus       104 -~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~--~  180 (292)
                       ....++||||+ +++|.+++.       ....+++..++.++.|++.||.|||   +.+++|+||||+|||++.++  .
T Consensus       123 ~~~~~~lv~e~~-~~~L~~~l~-------~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~  191 (345)
T 2v62_A          123 GRSYRFMVMERL-GIDLQKISG-------QNGTFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPDQ  191 (345)
T ss_dssp             SCEEEEEEEECE-EEEHHHHCB-------GGGBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTTS
T ss_pred             CCcEEEEEEecc-CCCHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCCc
Confidence             67789999999 899999993       2337999999999999999999999   88999999999999999877  9


Q ss_pred             eEEeecccccccCCCCc------cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc-chhhh
Q 044211          181 AKLFDFSFSISIPEGET------HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED-RLNEI  239 (292)
Q Consensus       181 ~kl~Dfg~a~~~~~~~~------~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~-~~~~~  239 (292)
                      +||+|||+++.+..+..      .......||..|++||.....           |++  ||+ |+. |+.... .....
T Consensus       192 ~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~-pf~~~~~~~~~~  270 (345)
T 2v62_A          192 VYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKL-PWEQNLKDPVAV  270 (345)
T ss_dssp             EEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSC-TTGGGTTCHHHH
T ss_pred             EEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCC-CccccccccHHH
Confidence            99999999987643221      112445789999888764432           888  888 544 332211 11100


Q ss_pred             --cccccccCCCCC-----CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          240 --IDPLIMGDRSCS-----GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       240 --~~~~~~~~~~~~-----~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                        .........+..     ....++..+.+++.+||+.||++|| +.+|++.|+++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~  327 (345)
T 2v62_A          271 QTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHG  327 (345)
T ss_dssp             HHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred             HHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence              001111111100     0013456899999999999999999 999999998754

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.8e-34  Score=248.15  Aligned_cols=227  Identities=19%  Similarity=0.184  Sum_probs=169.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-----hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-----TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-----~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||+|.+..       +++.||+|.++.....     ....+.+|+.++++++||||+++++++...+..++|||
T Consensus        20 ~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   92 (346)
T 1ua2_A           20 EGQFATVYKARDKN-------TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFD   92 (346)
T ss_dssp             EETTEEEEEEECSS-------CCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEE
T ss_pred             ecCCEEEEEEEECC-------CCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceEEEEE
Confidence            89999999999975       7899999998753221     12468899999999999999999999999999999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+.+ +|.+++.      .....+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++...
T Consensus        93 ~~~~-~l~~~~~------~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~  162 (346)
T 1ua2_A           93 FMET-DLEVIIK------DNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSF  162 (346)
T ss_dssp             CCSE-EHHHHHT------TCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTT
T ss_pred             cCCC-CHHHHHH------hcCcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEecccceec
Confidence            9995 9998883      23456888999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccch---hhhcccc-----------
Q 044211          193 PEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRL---NEIIDPL-----------  243 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~---~~~~~~~-----------  243 (292)
                      ..... ......||+.|++||.....            |++  +|+ |.. ++......   ..++...           
T Consensus       163 ~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  240 (346)
T 1ua2_A          163 GSPNR-AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVP-FLPGDSDLDQLTRIFETLGTPTEEQWPDM  240 (346)
T ss_dssp             TSCCC-CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSC-SSCCSSHHHHHHHHHHHHCCCCTTTSSST
T ss_pred             cCCcc-cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHcCCCChhhhhhh
Confidence            43322 22345689999888865321            888  888 543 32221111   0000000           


Q ss_pred             -------cccCCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          244 -------IMGDRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       244 -------~~~~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                             .....+..+    ....+..+.+|+.+||+.||++|| +.|+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          241 CSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             TSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             ccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence                   000000000    023457899999999999999999 9999864

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=3.7e-34  Score=268.47  Aligned_cols=218  Identities=15%  Similarity=0.209  Sum_probs=177.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       +++.||||+++..   .......+..|..++..+ +||||+++++++...+.+++||||
T Consensus       351 ~G~fG~V~~~~~~~-------~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~  423 (674)
T 3pfq_A          351 KGSFGKVMLSERKG-------TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEY  423 (674)
T ss_dssp             BTTTBCEEEEEESS-------SCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEEEC
T ss_pred             cCCCEEEEEEEECC-------CCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEEeC
Confidence            99999999999875       8899999998642   223456788999999988 799999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++...       ..+++..+..|+.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+++...
T Consensus       424 ~~gg~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~  493 (674)
T 3pfq_A          424 VNGGDLMYHIQQV-------GRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  493 (674)
T ss_dssp             CCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred             cCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence            9999999999533       46999999999999999999999   8999999999999999999999999999998654


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......||+.|++||+....           |++  ||+ |.. |+.. ....+.+...+......+.  ..++.
T Consensus       494 ~~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~-Pf~~-~~~~~~~~~i~~~~~~~p~--~~s~~  568 (674)
T 3pfq_A          494 WDGV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQA-PFEG-EDEDELFQSIMEHNVAYPK--SMSKE  568 (674)
T ss_dssp             CTTC-CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSC-SSCC-SSHHHHHHHHHSSCCCCCT--TSCHH
T ss_pred             cCCc-ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCC-CCCC-CCHHHHHHHHHhCCCCCCc--cCCHH
Confidence            3322 23456799999998876433           888  888 544 4433 3334444444444444433  66789


Q ss_pred             HHHHHhHhcCCCCCCCC-H
Q 044211          260 FAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~  277 (292)
                      +.+||.+||+.||++|| +
T Consensus       569 ~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          569 AVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             HHHHHHHHSCSSSTTCTTC
T ss_pred             HHHHHHHHccCCHHHCCCC
Confidence            99999999999999999 7

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=2.5e-34  Score=248.32  Aligned_cols=225  Identities=13%  Similarity=0.157  Sum_probs=162.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|....       +++.||+|.++....  .....+.+|+.++++++||||+++++++...+..++||||+.
T Consensus        44 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  116 (329)
T 3gbz_A           44 EGTYGEVYKAIDTV-------TNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAE  116 (329)
T ss_dssp             ECSSSEEEEEEETT-------TTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             ecCCeEEEEEEECC-------CCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEecCC
Confidence            89999999998765       899999999875432  234567899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec-----CCCceEEeeccccc
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN-----EENVAKLFDFSFSI  190 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~-----~~~~~kl~Dfg~a~  190 (292)
                       |+|.+++.       ....+++..+..++.|++.||.|||   +.+|+|+||||+|||++     .++.+||+|||++.
T Consensus       117 -~~L~~~~~-------~~~~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~  185 (329)
T 3gbz_A          117 -NDLKKYMD-------KNPDVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR  185 (329)
T ss_dssp             -EEHHHHHH-------HCTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHH
T ss_pred             -CCHHHHHh-------hcCCCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCCcc
Confidence             59999994       3346899999999999999999999   89999999999999994     45569999999998


Q ss_pred             ccCCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhccc--c----------
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDP--L----------  243 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~--~----------  243 (292)
                      ....... ......||..|++||.....            |++  +|+ |.. ++............  .          
T Consensus       186 ~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~  263 (329)
T 3gbz_A          186 AFGIPIR-QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTP-LFPGDSEIDQLFKIFEVLGLPDDTTWP  263 (329)
T ss_dssp             HHC------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSC-SSCCSSHHHHHHHHHHHHCCCCTTTST
T ss_pred             ccCCccc-ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCC-CcCCCCHHHHHHHHHHHhCCCchhhhh
Confidence            7653322 23345678999888764321            888  888 543 33222111111000  0          


Q ss_pred             -c------ccCCCCCC--------chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          244 -I------MGDRSCSG--------NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       244 -~------~~~~~~~~--------~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                       .      ....+...        ....++.+.+|+.+||+.||++|| +.|+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          264 GVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             TGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence             0      00000000        011456889999999999999999 999986

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=9.9e-34  Score=240.57  Aligned_cols=233  Identities=17%  Similarity=0.155  Sum_probs=174.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeee-ecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCC-LETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~-~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||+|.+.....  ...+.+|+.+++.++|++++..++.+ ...+..++||||+ +
T Consensus        19 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~   88 (296)
T 3uzp_A           19 SGSFGDIYLGTDIA-------AGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-G   88 (296)
T ss_dssp             EETTEEEEEEEETT-------TTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-C
T ss_pred             cCCCeEEEEEEEcC-------CCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec-C
Confidence            89999999999754       899999999875432  24588999999999988877666655 4566789999999 7


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec---CCCceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN---EENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~---~~~~~kl~Dfg~a~~~~  193 (292)
                      ++|.+++..      ....+++..+..++.|++.||.|||   +.+++|+||||+|||++   .++.+||+|||++....
T Consensus        89 ~~L~~~~~~------~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~  159 (296)
T 3uzp_A           89 PSLEDLFNF------CSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR  159 (296)
T ss_dssp             CBHHHHHHH------TTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred             CCHHHHHHh------hccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccc
Confidence            899999942      2456999999999999999999999   89999999999999994   78899999999998775


Q ss_pred             CCCcc------chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc--chhhhcccccccCCCCC
Q 044211          194 EGETH------ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED--RLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       194 ~~~~~------~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~  251 (292)
                      .....      ......|+..|++|+.....           |++  +|+ |+. |+....  .....+........+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~  238 (296)
T 3uzp_A          160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSL-PWQGLKAATKRQKYERISEKKMSTP  238 (296)
T ss_dssp             CTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC-TTSSCCCSSSSSHHHHHHHHHHHSC
T ss_pred             ccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCC-CCCCcCchhhhhhhhhhcccccCCc
Confidence            44321      12456789999888765432           888  888 544 333211  11111111110000000


Q ss_pred             C---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          252 G---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       252 ~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .   ...+++.+.+++.+||+.||++|| +.++++.|+++...
T Consensus       239 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  281 (296)
T 3uzp_A          239 IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR  281 (296)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHh
Confidence            0   013456899999999999999999 99999999998654

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=9.6e-34  Score=243.80  Aligned_cols=224  Identities=17%  Similarity=0.192  Sum_probs=168.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--------chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--------RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l  109 (292)
                      +|+||.||+|.+..       +++.||||.+.....        .....+.+|+.++++++||||+++++++.... .++
T Consensus        20 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-~~l   91 (322)
T 2ycf_A           20 SGACGEVKLAFERK-------TCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED-YYI   91 (322)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-EEE
T ss_pred             cCCCEEEEEEEEcC-------CCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-eEE
Confidence            89999999999875       889999999865321        12235789999999999999999999987654 899


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc---eEEeec
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV---AKLFDF  186 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~---~kl~Df  186 (292)
                      ||||+++|+|.+++       .....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.   +||+||
T Consensus        92 v~e~~~~~~L~~~~-------~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Df  161 (322)
T 2ycf_A           92 VLELMEGGELFDKV-------VGNKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDF  161 (322)
T ss_dssp             EEECCTTEETHHHH-------STTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECCC
T ss_pred             EEecCCCCcHHHHH-------hccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEccC
Confidence            99999999999999       24567999999999999999999999   899999999999999987654   999999


Q ss_pred             ccccccCCCCccchhhhhcccccccccccC---------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCC
Q 044211          187 SFSISIPEGETHISELLSGLRAFDLARLNE---------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRS  249 (292)
Q Consensus       187 g~a~~~~~~~~~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~  249 (292)
                      |++.......  ......|+..|++||...         ++     |++  +|+ |.. |+...............+...
T Consensus       162 g~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~  238 (322)
T 2ycf_A          162 GHSKILGETS--LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYP-PFSEHRTQVSLKDQITSGKYN  238 (322)
T ss_dssp             TTCEECCCCH--HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSC-SSCSTTCSSCHHHHHHHTCCC
T ss_pred             ccceeccccc--ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCC-CCcccchHHHHHHHHHhCccc
Confidence            9998765432  234567899998888631         11     888  888 543 433222111111111122221


Q ss_pred             CCC--chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          250 CSG--NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       250 ~~~--~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ..+  ....+..+.+++.+||+.||++|| +.++++
T Consensus       239 ~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          239 FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            111  013467899999999999999999 999885

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=239.41  Aligned_cols=228  Identities=14%  Similarity=0.164  Sum_probs=167.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-----cchHHHHHHHHHHHHhcC---CCCccceeeeeecCC----
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-----PRTYDCCINNIVYASQMI---HRCIFKLIGCCLETQ----  105 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~~----  105 (292)
                      +|+||.||+|.+..       +++.||+|.+....     ......+.+|+.+++.++   ||||+++++++....    
T Consensus        19 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~   91 (308)
T 3g33_A           19 VGAYGTVYKARDPH-------SGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDRE   91 (308)
T ss_dssp             CSSSCCEEEEECTT-------TCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSE
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCc
Confidence            89999999999865       89999999986321     122345677888777764   999999999998754    


Q ss_pred             -cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          106 -IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       106 -~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                       ..++|+||+. |+|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||||+|||++.++.+||+
T Consensus        92 ~~~~lv~e~~~-~~L~~~~~~~-----~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~  162 (308)
T 3g33_A           92 IKVTLVFEHVD-QDLRTYLDKA-----PPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKLA  162 (308)
T ss_dssp             EEEEEEEECCC-CBHHHHHHTC-----CTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEEC
T ss_pred             eeEEEEehhhh-cCHHHHHhhc-----cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEEe
Confidence             4789999998 5999999422     2345999999999999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCCccchhhhhcccccccccccC------CC-----CeE--EEccchhhhhhccchh---hhcccc---c-
Q 044211          185 DFSFSISIPEGETHISELLSGLRAFDLARLNE------DD-----GYV--VLLDHIKKYFEEDRLN---EIIDPL---I-  244 (292)
Q Consensus       185 Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~~~~~~~~~~~~~~---~~~~~~---~-  244 (292)
                      |||++........  .....||+.|++||...      ++     |++  +|++...|+.......   .++...   . 
T Consensus       163 Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~  240 (308)
T 3g33_A          163 DFGLARIYSYQMA--LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPE  240 (308)
T ss_dssp             SCSCTTTSTTCCC--SGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCT
T ss_pred             eCccccccCCCcc--cCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCh
Confidence            9999987653322  34567899998887643      22     888  8883333332221111   000000   0 


Q ss_pred             ----------ccCCC---CCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          245 ----------MGDRS---CSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       245 ----------~~~~~---~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                ....+   ...    ..+.+..+.+|+.+||+.||++|| +.|+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  297 (308)
T 3g33_A          241 DDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH  297 (308)
T ss_dssp             TTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             hhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence                      00000   000    013457889999999999999999 9999864

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=251.30  Aligned_cols=238  Identities=14%  Similarity=0.151  Sum_probs=172.5

Q ss_pred             ccCCCeeEeeecCCCC-ccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccc---------------eeeee
Q 044211           38 IKNGYKLYEGFFQNRP-ISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFK---------------LIGCC  101 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~-~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~---------------~~~~~  101 (292)
                      +|+||.||+|.+..-. .....+++.||+|.+...     ..+.+|+.++++++||||++               +++++
T Consensus        52 ~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~  126 (352)
T 2jii_A           52 RDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFG  126 (352)
T ss_dssp             EETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEE
T ss_pred             CCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCccCccchhhcc
Confidence            8999999999986200 000002789999998755     34779999999999999987               56666


Q ss_pred             ec-CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC-
Q 044211          102 LE-TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-  179 (292)
Q Consensus       102 ~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~-  179 (292)
                      .. ....++||||+ +++|.+++...     ....+++..++.++.|++.||.|||   +.+++|+||||+|||++.++ 
T Consensus       127 ~~~~~~~~lv~e~~-~~~L~~~l~~~-----~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIl~~~~~~  197 (352)
T 2jii_A          127 VHQDKYRFLVLPSL-GRSLQSALDVS-----PKHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAENIFVDPEDQ  197 (352)
T ss_dssp             EETTTEEEEEEECC-CEEHHHHHHHS-----GGGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGGGEEEETTEE
T ss_pred             ccCCcEEEEEecCC-CcCHHHHHHhC-----CcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEEcCCCC
Confidence            65 67789999999 89999999532     1367999999999999999999999   89999999999999999998 


Q ss_pred             -ceEEeecccccccCCCCcc------chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc-chh
Q 044211          180 -VAKLFDFSFSISIPEGETH------ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED-RLN  237 (292)
Q Consensus       180 -~~kl~Dfg~a~~~~~~~~~------~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~-~~~  237 (292)
                       .+||+|||++..+......      ......||+.|++|+.....           |++  +|+ |+. |+.... ...
T Consensus       198 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~-pf~~~~~~~~  276 (352)
T 2jii_A          198 SQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFL-PWTNCLPNTE  276 (352)
T ss_dssp             EEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCC-TTGGGTTCHH
T ss_pred             ceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCC-CcccCCcCHH
Confidence             8999999999876532211      12345789999888765432           888  888 553 333221 111


Q ss_pred             hhcc---cccccCCCCC----CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          238 EIID---PLIMGDRSCS----GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       238 ~~~~---~~~~~~~~~~----~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ....   ..........    .....+..+.+++.+||+.||++|| +.++++.|+++...
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~  337 (352)
T 2jii_A          277 DIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQD  337 (352)
T ss_dssp             HHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHh
Confidence            1111   0011111000    0013467899999999999999999 99999999998754

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=3e-34  Score=247.94  Aligned_cols=227  Identities=21%  Similarity=0.288  Sum_probs=167.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +++.||+|.+.....  ...+.+.+|+.++++++||||+++++++...+..++||||+.
T Consensus        35 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  107 (331)
T 4aaa_A           35 EGSYGMVMKCRNKD-------TGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVD  107 (331)
T ss_dssp             GGTTSSEEEEEETT-------TCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             ecCCEEEEEEEECC-------CCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEecCC
Confidence            89999999999875       799999999865432  234567899999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++......
T Consensus       108 ~~~l~~~~~-------~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  177 (331)
T 4aaa_A          108 HTILDDLEL-------FPNGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP  177 (331)
T ss_dssp             EEHHHHHHH-------STTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred             cchHHHHHh-------hccCCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCC
Confidence            988888872       3456999999999999999999999   899999999999999999999999999999866443


Q ss_pred             CccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhcc-------------------
Q 044211          196 ETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIID-------------------  241 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~-------------------  241 (292)
                      .. ......|+..|++||....       +     |++  +|+ |+. |+...........                   
T Consensus       178 ~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (331)
T 4aaa_A          178 GE-VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEP-LFPGDSDIDQLYHIMMCLGNLIPRHQELFNKN  255 (331)
T ss_dssp             -------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHC
T ss_pred             cc-ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCC-CCCCCCcHHHHHHHHHHhCCCChhhhhHhhhc
Confidence            22 2234568889988875432       1     888  888 653 3322211110000                   


Q ss_pred             cccccCC----C-CCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 PLIMGDR----S-CSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 ~~~~~~~----~-~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +...+..    . ...    .+.+++.+.+|+.+||+.||++|| +.|+++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  307 (331)
T 4aaa_A          256 PVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH  307 (331)
T ss_dssp             GGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             cccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            0000000    0 000    013467899999999999999999 9998864

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=240.09  Aligned_cols=226  Identities=14%  Similarity=0.212  Sum_probs=173.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC----cchHHHHHHHHHHHHhcCCCCccceeeeee--cCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK----PRTYDCCINNIVYASQMIHRCIFKLIGCCL--ETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~~~~~~~--~~~~~~lv~  111 (292)
                      +|+||.||++....       +++.||+|.++...    ......+.+|+.++++++||||+++++++.  .....++||
T Consensus        15 ~G~~g~V~~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~   87 (305)
T 2wtk_C           15 EGSYGKVKEVLDSE-------TLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVM   87 (305)
T ss_dssp             ECSSCEEEEEEBTT-------TCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEE
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEe
Confidence            89999999999875       88999999986531    234567999999999999999999999984  455789999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+.++ |.+++...     ....+++..+..++.|++.||.|||   +.+++|+||||+||+++.++.+||+|||++..
T Consensus        88 e~~~~~-l~~~~~~~-----~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~  158 (305)
T 2wtk_C           88 EYCVCG-MQEMLDSV-----PEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEA  158 (305)
T ss_dssp             ECCSEE-HHHHHHHS-----TTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             hhccCC-HHHHHHhC-----cccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeeccccccc
Confidence            999965 77777432     2456899999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCC-ccchhhhhcccccccccccCC--------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCch
Q 044211          192 IPEGE-THISELLSGLRAFDLARLNED--------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       192 ~~~~~-~~~~~~~~g~~~y~~~~~~~~--------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
                      ..... ........|+..|.+||....        +     |++  +|+ |.. |+.. ............+....+  .
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~-~~~~~~~~~i~~~~~~~~--~  234 (305)
T 2wtk_C          159 LHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLY-PFEG-DNIYKLFENIGKGSYAIP--G  234 (305)
T ss_dssp             CCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSC-SCCC-SSHHHHHHHHHHCCCCCC--S
T ss_pred             cCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCC-CCCC-chHHHHHHHHhcCCCCCC--C
Confidence            64322 222334568899988876532        1     888  888 543 3322 222222222222222222  2


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .+++.+.+++.+||+.||++|| +.++++.
T Consensus       235 ~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          235 DCGPPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             SSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             ccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            5677899999999999999999 9999864

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.6e-34  Score=246.71  Aligned_cols=227  Identities=18%  Similarity=0.218  Sum_probs=169.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeec------CCcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLE------TQIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~------~~~~~lv  110 (292)
                      +|+||.||+|.+..       +++.||+|.+.... .....+.+|+.+++++ +||||+++++++..      .+..++|
T Consensus        34 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv  105 (326)
T 2x7f_A           34 NGTYGQVYKGRHVK-------TGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLV  105 (326)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEE
T ss_pred             cCCCEEEEEEEECC-------CCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEE
Confidence            89999999999865       88999999987553 3346789999999999 79999999999986      4578999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      |||+++|+|.+++...     ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++.
T Consensus       106 ~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~  177 (326)
T 2x7f_A          106 MEFCGAGSVTDLIKNT-----KGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVSA  177 (326)
T ss_dssp             EECCTTEEHHHHHHHS-----GGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCTTTC
T ss_pred             EEcCCCCcHHHHHHhc-----ccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEEeeCcCce
Confidence            9999999999999532     2356899999999999999999999   8999999999999999999999999999998


Q ss_pred             ccCCCCccchhhhhcccccccccccC-----------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNE-----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      ...... .......|+..|++|+...           ++     |++  +|+ |.. |+......... ........+..
T Consensus       178 ~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~-p~~~~~~~~~~-~~~~~~~~~~~  254 (326)
T 2x7f_A          178 QLDRTV-GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAP-PLCDMHPMRAL-FLIPRNPAPRL  254 (326)
T ss_dssp             --------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSC-TTTTSCHHHHH-HHHHHSCCCCC
T ss_pred             ecCcCc-cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCC-CCCCCcHHHHH-HHhhcCccccC
Confidence            764322 1223456889998887643           22     888  888 543 43332221111 11111111111


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .....+..+.+++.+||+.||.+|| +.++++.
T Consensus       255 ~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  287 (326)
T 2x7f_A          255 KSKKWSKKFQSFIESCLVKNHSQRPATEQLMKH  287 (326)
T ss_dssp             SCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             CccccCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            1234567899999999999999999 9999873

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=2.9e-34  Score=244.60  Aligned_cols=233  Identities=18%  Similarity=0.272  Sum_probs=157.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||+|.+.... ....+.+.+|+..+++++||||+++++++...+..++||||+++
T Consensus        25 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   97 (303)
T 2vwi_A           25 SGATAVVQAAYCAP-------KKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSG   97 (303)
T ss_dssp             ---CCCEEEEEC-----------CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTT
T ss_pred             cccceEEEEEEECC-------CCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccC
Confidence            89999999999865       88999999986542 23456788999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          117 GSLADRIRIHHT-PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       117 gsL~~~l~~~~~-~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      ++|.+++..... .......+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.+||+|||++......
T Consensus        98 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~  174 (303)
T 2vwi_A           98 GSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATG  174 (303)
T ss_dssp             CBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC--
T ss_pred             CchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccchheeccC
Confidence            999999954211 1123567999999999999999999999   899999999999999999999999999999766432


Q ss_pred             Cc----cchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCC------
Q 044211          196 ET----HISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC------  250 (292)
Q Consensus       196 ~~----~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~------  250 (292)
                      ..    .......|++.|.+|+...       ++     |++  +|+ |+. |+.......... .......+.      
T Consensus       175 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~~~~~~-~~~~~~~~~~~~~~~  252 (303)
T 2vwi_A          175 GDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAA-PYHKYPPMKVLM-LTLQNDPPSLETGVQ  252 (303)
T ss_dssp             -------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSC-TTTTSCGGGHHH-HHHTSSCCCTTC---
T ss_pred             CCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCC-CCccCchhhHHH-HHhccCCCccccccc
Confidence            21    1123456888998887542       22     888  888 544 333222111111 011111100      


Q ss_pred             --CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          251 --SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       251 --~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                        ......+..+.+++.+||+.||.+|| +.++++
T Consensus       253 ~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          253 DKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             --CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             cchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence              00124456899999999999999999 999986

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=9.1e-34  Score=259.37  Aligned_cols=219  Identities=15%  Similarity=0.208  Sum_probs=173.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.+...   .......+.+|+.+++.++||||+++++++...+..++||||+
T Consensus       194 ~G~fG~Vy~a~~~~-------tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~  266 (576)
T 2acx_A          194 KGGFGEVCACQVRA-------TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLM  266 (576)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             eCCCEEEEEEEECC-------CCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcC
Confidence            89999999999875       8999999998642   2233466889999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++...     ....+++..+..++.||+.||.|||   ..+|+||||||+|||++.+|.+||+|||++.....
T Consensus       267 ~gg~L~~~l~~~-----~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~  338 (576)
T 2acx_A          267 NGGDLKFHIYHM-----GQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE  338 (576)
T ss_dssp             CSCBHHHHHHSS-----SSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             CCCcHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence            999999999422     2345999999999999999999999   89999999999999999999999999999987754


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccc---hhhhcccccccCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDR---LNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ...  .....||+.|++||+....           |++  ||+ |.. |+.....   ...+...........+  ...+
T Consensus       339 ~~~--~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~-PF~~~~~~~~~~~i~~~i~~~~~~~p--~~~s  413 (576)
T 2acx_A          339 GQT--IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQS-PFQQRKKKIKREEVERLVKEVPEEYS--ERFS  413 (576)
T ss_dssp             TCC--EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSC-SSSCSSSCCCHHHHHHHHHHCCCCCC--TTSC
T ss_pred             Ccc--ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCC-CCcccccchhHHHHHHHhhcccccCC--ccCC
Confidence            432  2335799999988865543           888  888 654 4433211   1111111111222222  3567


Q ss_pred             HHHHHHHhHhcCCCCCCCC
Q 044211          258 QAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP  276 (292)
                      +.+.+||.+||+.||.+||
T Consensus       414 ~~~~dLI~~lL~~dP~~R~  432 (576)
T 2acx_A          414 PQARSLCSQLLCKDPAERL  432 (576)
T ss_dssp             HHHHHHHHHHTCSSGGGST
T ss_pred             HHHHHHHHHhccCCHHHcC
Confidence            7899999999999999998

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-34  Score=251.80  Aligned_cols=222  Identities=18%  Similarity=0.178  Sum_probs=172.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC----cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK----PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||++....    +..+++.||||.++...    ......+.+|+.+++++ +||||+++++++...+..++|||
T Consensus        64 ~G~~g~Vy~~~~~~----~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e  139 (355)
T 1vzo_A           64 TGAYGKVFLVRKIS----GHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILD  139 (355)
T ss_dssp             ETTTEEEEEEEECS----STTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cCCCEEEEEEEEcc----cCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCceEEEEee
Confidence            89999999998731    11178999999986431    12335577899999999 69999999999999999999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+++|+|.+++..       ...+++..+..++.|++.||.|||   ..+|+|+||||+|||++.++.+||+|||++..+
T Consensus       140 ~~~~~~L~~~l~~-------~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~  209 (355)
T 1vzo_A          140 YINGGELFTHLSQ-------RERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEF  209 (355)
T ss_dssp             CCCSCBHHHHHHH-------HSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             cCCCCCHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCeec
Confidence            9999999999943       346899999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCccchhhhhcccccccccccCC--------C-----CeE--EEc-cchhhhhhcc---chhhhcccccccCCCCCCc
Q 044211          193 PEGETHISELLSGLRAFDLARLNED--------D-----GYV--VLL-DHIKKYFEED---RLNEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~--------~-----Gvi--el~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  253 (292)
                      ............||+.|++|++...        +     |++  ||+ |+. |+....   ....+........++.+  
T Consensus       210 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~--  286 (355)
T 1vzo_A          210 VADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGAS-PFTVDGEKNSQAEISRRILKSEPPYP--  286 (355)
T ss_dssp             CGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSC-TTSCTTSCCCHHHHHHHHHHCCCCCC--
T ss_pred             ccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCC-CCccCCccchHHHHHHHHhccCCCCC--
Confidence            5444444455679999988887542        1     888  888 544 332211   11222222222222222  


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                      ...+..+.+|+.+||+.||++||
T Consensus       287 ~~~~~~~~~li~~~L~~dP~~R~  309 (355)
T 1vzo_A          287 QEMSALAKDLIQRLLMKDPKKRL  309 (355)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGST
T ss_pred             cccCHHHHHHHHHHhhhCHHHhc
Confidence            35677899999999999999998

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=2e-33  Score=244.69  Aligned_cols=228  Identities=16%  Similarity=0.148  Sum_probs=168.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecC--------Ccc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET--------QIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~--------~~~  107 (292)
                      +|+||.||+|.+..       +++.||+|.+...  .......+.+|+.+++.++||||+++++++...        +..
T Consensus        27 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~   99 (351)
T 3mi9_A           27 QGTFGEVFKARHRK-------TGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSI   99 (351)
T ss_dssp             SCSTTSEEEEEETT-------TCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEE
T ss_pred             cCCCcEEEEEEECC-------CCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceE
Confidence            89999999999865       8999999998543  223346788999999999999999999999863        457


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++||||+.+ +|.+.+.      .....+++..+..++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||
T Consensus       100 ~lv~e~~~~-~l~~~l~------~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg  169 (351)
T 3mi9_A          100 YLVFDFCEH-DLAGLLS------NVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFG  169 (351)
T ss_dssp             EEEEECCSE-EHHHHHH------CTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             EEEEeccCC-CHHHHHh------hccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccch
Confidence            999999995 8887773      23456999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCC---ccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchh--hhcccccccC
Q 044211          188 FSISIPEGE---THISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLN--EIIDPLIMGD  247 (292)
Q Consensus       188 ~a~~~~~~~---~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~--~~~~~~~~~~  247 (292)
                      ++..+....   ........||+.|++||....       +     |++  +|+ |.. ++.......  ..+.......
T Consensus       170 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~-pf~~~~~~~~~~~i~~~~~~~  248 (351)
T 3mi9_A          170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSP-IMQGNTEQHQLALISQLCGSI  248 (351)
T ss_dssp             TCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHCCC
T ss_pred             hcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCC
Confidence            998764322   122234567999988885432       1     888  888 543 222211100  0000000000


Q ss_pred             C---------------------CCCCchH------HHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          248 R---------------------SCSGNQQ------QLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       248 ~---------------------~~~~~~~------~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .                     .......      .++.+.+|+.+||+.||++|| +.|+++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          249 TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             CTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             ChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence            0                     0000000      145688999999999999999 9999864

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=248.00  Aligned_cols=231  Identities=13%  Similarity=0.199  Sum_probs=170.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+.         + .||+|.++..  .....+.+.+|+.++++++||||+++++++...+..++|+||++
T Consensus        43 ~G~~g~V~~~~~~---------~-~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~  112 (319)
T 2y4i_B           43 KGRFGQVYHGRWH---------G-EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCK  112 (319)
T ss_dssp             CSSSSEEEEEEES---------S-SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCCC
T ss_pred             cCCceEEEEEEEc---------C-eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeeccc
Confidence            8999999999884         2 4999998653  22333557789999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|.+++.      .....+++..+..++.|++.||.|||   ..+++|+||||+||+++ ++.+||+|||++......
T Consensus       113 ~~~L~~~l~------~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~  182 (319)
T 2y4i_B          113 GRTLYSVVR------DAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVL  182 (319)
T ss_dssp             SEEHHHHTT------SSCCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC-----
T ss_pred             CCcHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCccccccc
Confidence            999999993      23457899999999999999999999   89999999999999998 679999999998765321


Q ss_pred             C----ccchhhhhcccccccccccCC---------------C-----CeE--EEc-cchhhhhhccchhhhcccccccCC
Q 044211          196 E----THISELLSGLRAFDLARLNED---------------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDR  248 (292)
Q Consensus       196 ~----~~~~~~~~g~~~y~~~~~~~~---------------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~  248 (292)
                      .    ........|+..|++||....               +     |++  +|+ |.. |+... ...........+..
T Consensus       183 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~-p~~~~-~~~~~~~~~~~~~~  260 (319)
T 2y4i_B          183 QAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREW-PFKTQ-PAEAIIWQMGTGMK  260 (319)
T ss_dssp             -----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSC-SSSSC-CHHHHHHHHHTTCC
T ss_pred             cccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCC-CCCCC-CHHHHHHHhccCCC
Confidence            1    112233458888988876532               1     888  888 543 33222 22222222222222


Q ss_pred             CCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          249 SCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       249 ~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +......++..+.+++.+||+.||++|| +.++++.|+++...
T Consensus       261 ~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~  303 (319)
T 2y4i_B          261 PNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKR  303 (319)
T ss_dssp             CCCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC---
T ss_pred             CCCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence            2222124456899999999999999999 99999999987754

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.1e-34  Score=248.99  Aligned_cols=222  Identities=14%  Similarity=0.137  Sum_probs=164.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC------cceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ------IPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~l  109 (292)
                      +|+||.||+|.+..       +++.||||.+...  .....+.+.+|+.+++.++||||+++++++....      ..++
T Consensus        35 ~G~~g~V~~a~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~l  107 (367)
T 1cm8_A           35 SGAYGAVCSAVDGR-------TGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYL  107 (367)
T ss_dssp             -----CEEEEEETT-------TCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEE
T ss_pred             ecCCeEEEEEEECC-------CCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEE
Confidence            89999999999865       8999999998653  2234567899999999999999999999997653      4599


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ||||+ +++|.++++        ...+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++
T Consensus       108 v~e~~-~~~L~~~~~--------~~~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a  175 (367)
T 1cm8_A          108 VMPFM-GTDLGKLMK--------HEKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLA  175 (367)
T ss_dssp             EEECC-SEEHHHHHH--------HCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             EEecC-CCCHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeecc
Confidence            99999 689999993        246899999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchh---hhccc---------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLN---EIIDP---------  242 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~---~~~~~---------  242 (292)
                      ......    .....+|..|++|+....       +     |++  ||+ |+. ++.......   .++..         
T Consensus       176 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~-pf~~~~~~~~l~~i~~~~g~~~~~~~  250 (367)
T 1cm8_A          176 RQADSE----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKT-LFKGSDHLDQLKEIMKVTGTPPAEFV  250 (367)
T ss_dssp             EECCSS----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSC-SSCCSSHHHHHHHHHHHHCCCCHHHH
T ss_pred             cccccc----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHhcCCCCHHHH
Confidence            876432    233567899988875432       2     888  888 554 332211110   00000         


Q ss_pred             -------------ccccCCC--C-CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          243 -------------LIMGDRS--C-SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       243 -------------~~~~~~~--~-~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                   .+.....  . ......++.+.+|+.+||+.||++|| +.++++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h  308 (367)
T 1cm8_A          251 QRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  308 (367)
T ss_dssp             HTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence                         0000000  0 00124467899999999999999999 9999873

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=4.3e-33  Score=243.33  Aligned_cols=169  Identities=16%  Similarity=0.139  Sum_probs=142.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-----CCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-----HRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-----h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||.||+|.+..       +++.||+|.++.. ......+..|+.+++.++     ||||+++++++...+..++|||
T Consensus        45 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e  116 (360)
T 3llt_A           45 DGTFGRVLLCQHID-------NKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFE  116 (360)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEEC
T ss_pred             ccCCeEEEEEEECC-------CCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEEc
Confidence            89999999999865       8899999999754 234466788999999986     9999999999999999999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC---------------
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE---------------  177 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~---------------  177 (292)
                      |+ +++|.+++...     ....+++..+..++.|++.||.|||   +.+|+||||||+|||++.               
T Consensus       117 ~~-~~~L~~~~~~~-----~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~  187 (360)
T 3llt_A          117 PL-GPSLYEIITRN-----NYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKSLITVRRVTD  187 (360)
T ss_dssp             CC-CCBHHHHHHHT-----TTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEEEEEEECTTT
T ss_pred             CC-CCCHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEccccccccccchhcccc
Confidence            99 78999999533     2345899999999999999999999   899999999999999975               


Q ss_pred             ----------CCceEEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cch
Q 044211          178 ----------ENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHI  227 (292)
Q Consensus       178 ----------~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~  227 (292)
                                ++.+||+|||++.......    ....||+.|++||.....           |++  +|+ |+.
T Consensus       188 ~~~~~~~~~~~~~~kl~DFG~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~  257 (360)
T 3llt_A          188 GKKIQIYRTKSTGIKLIDFGCATFKSDYH----GSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSL  257 (360)
T ss_dssp             CCEEEEEEESCCCEEECCCTTCEETTSCC----CSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred             cccccccccCCCCEEEEeccCceecCCCC----cCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCC
Confidence                      7899999999998654322    345689999888765432           888  888 643

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=4.8e-33  Score=235.61  Aligned_cols=225  Identities=16%  Similarity=0.191  Sum_probs=174.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|....       +++.||+|.+...  .......+.+|+.++++++||||+++++++...+..++|+||++
T Consensus        32 ~G~~g~V~~~~~~~-------~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~  104 (287)
T 2wei_A           32 KGSFGEVLKCKDRI-------TQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYT  104 (287)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             CCCCEEEEEEEEcC-------CCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEEccC
Confidence            89999999999865       8899999998643  23456789999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC---CceEEeeccccccc
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE---NVAKLFDFSFSISI  192 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~---~~~kl~Dfg~a~~~  192 (292)
                      +++|.+++..       ...+++..+..++.|++.||.|||   ..+++|+||+|+||+++.+   +.+||+|||++...
T Consensus       105 ~~~L~~~l~~-------~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~  174 (287)
T 2wei_A          105 GGELFDEIIK-------RKRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF  174 (287)
T ss_dssp             SCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTB
T ss_pred             CCCHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcceee
Confidence            9999998842       346899999999999999999999   8999999999999999754   46999999999876


Q ss_pred             CCCCccchhhhhcccccccccccCCC----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC--chHHH
Q 044211          193 PEGETHISELLSGLRAFDLARLNEDD----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG--NQQQL  257 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~~----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  257 (292)
                      .....  .....|+..|.+|+.....          |++  +|+ |.. |+... ...........+..+.+.  ....+
T Consensus       175 ~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~-p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  250 (287)
T 2wei_A          175 QQNTK--MKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTP-PFYGK-NEYDILKRVETGKYAFDLPQWRTIS  250 (287)
T ss_dssp             CCCSS--CSCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSC-SSCCS-SHHHHHHHHHHCCCCCCSGGGTTSC
T ss_pred             cCCCc--cccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCC-CCCCC-CHHHHHHHHHcCCCCCCchhhhhcC
Confidence            54332  2234578888877754432          888  888 543 33222 222222222222222111  12456


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+.+++.+||+.||++|| +.++++.
T Consensus       251 ~~~~~li~~~l~~dp~~Rps~~ell~h  277 (287)
T 2wei_A          251 DDAKDLIRKMLTFHPSLRITATQCLEH  277 (287)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHHHHcccChhhCcCHHHHhcC
Confidence            7899999999999999999 9999873

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=2.1e-33  Score=245.74  Aligned_cols=225  Identities=14%  Similarity=0.142  Sum_probs=170.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecC-----CcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLET-----QIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-----~~~~lv~  111 (292)
                      +|+||.||+|....       +++.||+|.+.... ......+.+|+.++++++||||+++++++...     ...++|+
T Consensus        37 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~  109 (364)
T 3qyz_A           37 EGAYGMVCSAYDNL-------NKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQ  109 (364)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEE
T ss_pred             cCCCeEEEEEEECC-------CCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEE
Confidence            89999999999865       88999999997543 33446789999999999999999999999764     3578999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+. |+|.++++        ...+++..+..++.|++.||.|||   +.+++|+||||+|||++.++.+||+|||++..
T Consensus       110 e~~~-~~L~~~l~--------~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~  177 (364)
T 3qyz_A          110 DLME-TDLYKLLK--------TQHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARV  177 (364)
T ss_dssp             ECCS-EEHHHHHH--------HCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             cccC-cCHHHHHH--------hCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceEe
Confidence            9999 59999993        345999999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCccc--hhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhhhcccccc--c------
Q 044211          192 IPEGETHI--SELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIM--G------  246 (292)
Q Consensus       192 ~~~~~~~~--~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~--~------  246 (292)
                      ........  .....||+.|++|+...       ++     |++  +|+ |+. |+..... ...+.....  +      
T Consensus       178 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~-pf~~~~~-~~~~~~i~~~~~~~~~~~  255 (364)
T 3qyz_A          178 ADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRP-IFPGKHY-LDQLNHILGILGSPSQED  255 (364)
T ss_dssp             CCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSC-SSCCSSG-GGHHHHHHHHHCSCCHHH
T ss_pred             cCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCC-CCCCCCh-HHHHHHHHHHhCCCCHHH
Confidence            65332211  23457899998888531       11     888  888 653 3322211 111100000  0      


Q ss_pred             -----------------CCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          247 -----------------DRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       247 -----------------~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                       ......    ....++.+.+|+.+||+.||++|| +.|+++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  314 (364)
T 3qyz_A          256 LNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  314 (364)
T ss_dssp             HHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                             000000    013456799999999999999999 9999863

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.9e-34  Score=245.96  Aligned_cols=226  Identities=16%  Similarity=0.163  Sum_probs=163.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||+|.+...... ....+.+|+.++++++||||+++++++...+..++||||+. 
T Consensus        12 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-   83 (324)
T 3mtl_A           12 EGTYATVYKGKSKL-------TDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-   83 (324)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCS-
T ss_pred             CCCCEEEEEEEECC-------CCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccc-
Confidence            89999999999875       8899999998654321 11235679999999999999999999999999999999998 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++..      ....+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++.......
T Consensus        84 ~~l~~~~~~------~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~  154 (324)
T 3mtl_A           84 KDLKQYLDD------CGNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT  154 (324)
T ss_dssp             EEHHHHHHH------TTTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC----
T ss_pred             cCHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCc
Confidence            599999842      2456899999999999999999999   8999999999999999999999999999997654322


Q ss_pred             ccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhccccc--ccCC-----------
Q 044211          197 THISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDPLI--MGDR-----------  248 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~--~~~~-----------  248 (292)
                       .......||..|++|+.....            |++  +|+ |+. |+..... .+......  .+.+           
T Consensus       155 -~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~-pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~  231 (324)
T 3mtl_A          155 -KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRP-LFPGSTV-EEQLHFIFRILGTPTEETWPGILSN  231 (324)
T ss_dssp             ---------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSC-SCCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGC
T ss_pred             -cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCH-HHHHHHHHHHhCCCChHhchhhhcc
Confidence             222345678999888764321            888  888 653 3322111 11000000  0000           


Q ss_pred             --------C---CCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          249 --------S---CSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       249 --------~---~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                              +   ...    ....++.+.+|+.+||+.||++|| +.|+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  282 (324)
T 3mtl_A          232 EEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH  282 (324)
T ss_dssp             HHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             hhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence                    0   000    013456789999999999999999 9999863

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=5.7e-33  Score=243.61  Aligned_cols=223  Identities=16%  Similarity=0.206  Sum_probs=160.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC------cceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ------IPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~l  109 (292)
                      +|+||.||+|....       +++.||||.+...  .......+.+|+.+++.++||||+++++++....      ..++
T Consensus        35 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~l  107 (371)
T 2xrw_A           35 SGAQGIVCAAYDAI-------LERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYI  107 (371)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEE
T ss_pred             ecCCEEEEEEEECC-------CCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEE
Confidence            89999999999865       8999999999753  2334467889999999999999999999997654      5799


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ||||+. |+|.+.+.         ..+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++
T Consensus       108 v~e~~~-~~l~~~~~---------~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a  174 (371)
T 2xrw_A          108 VMELMD-ANLCQVIQ---------MELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA  174 (371)
T ss_dssp             EEECCS-EEHHHHHH---------SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC-
T ss_pred             EEEcCC-CCHHHHHh---------hccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeecc
Confidence            999998 58988882         34889999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccch---hhhcccc---------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRL---NEIIDPL---------  243 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~---~~~~~~~---------  243 (292)
                      .......  ......||+.|++||....      +     |++  +|+ |+. |+......   ..++...         
T Consensus       175 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~~~~~~~~~~i~~~~~~~~~~~~~  251 (371)
T 2xrw_A          175 RTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGV-LFPGTDHIDQWNKVIEQLGTPCPEFMK  251 (371)
T ss_dssp             -----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSC-SSCCSSHHHHHHHHHC-CCCCCHHHHT
T ss_pred             ccccccc--ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            8664322  2234578999988876432      2     888  888 643 33221111   0000000         


Q ss_pred             ---------cccCC----------------CCCC--chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          244 ---------IMGDR----------------SCSG--NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       244 ---------~~~~~----------------~~~~--~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                               ....+                +...  ....+..+.+|+.+||+.||++|| +.|+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  319 (371)
T 2xrw_A          252 KLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  319 (371)
T ss_dssp             TSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             HhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence                     00000                0000  012367899999999999999999 9999874

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=3.3e-33  Score=240.90  Aligned_cols=230  Identities=15%  Similarity=0.180  Sum_probs=158.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHH-HHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIV-YASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~-~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +++.||+|.++.... ....++..|+. +++.++||||+++++++...+..++||||+.
T Consensus        32 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~  104 (327)
T 3aln_A           32 RGAYGSVNKMVHKP-------SGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMS  104 (327)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCS
T ss_pred             cCCCEEEEEEEEcC-------CCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecC
Confidence            89999999999865       899999999976532 33345666666 6777899999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR-PVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~-~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      + +|.+++.....  .....+++..+..++.|++.||.|||   .. +++|+||||+||+++.++.+||+|||++.....
T Consensus       105 ~-~l~~~~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~  178 (327)
T 3aln_A          105 T-SFDKFYKYVYS--VLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVD  178 (327)
T ss_dssp             E-EHHHHHHHHHH--TTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC---
T ss_pred             C-ChHHHHHHHHh--hhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCceeccc
Confidence            5 88888843211  13567899999999999999999999   77 999999999999999999999999999987654


Q ss_pred             CCccchhhhhcccccccccccC----------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC---c
Q 044211          195 GETHISELLSGLRAFDLARLNE----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG---N  253 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  253 (292)
                      ...  .....|+..|++||...          ++     |++  +|+ |.. |+.........+.....+..+...   .
T Consensus       179 ~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (327)
T 3aln_A          179 SIA--KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRF-PYPKWNSVFDQLTQVVKGDPPQLSNSEE  255 (327)
T ss_dssp             -----------------------------CCSHHHHHHHHHHHHHHHHSCC-CSSCC-------CCCCCSCCCCCCCCSS
T ss_pred             ccc--cccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCC-CCCCcchHHHHHHHHhcCCCCCCCCccc
Confidence            322  23346889998888752          11     888  888 543 433322222222223332222111   1


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..+++.+.+|+.+||+.||++|| +.++++.
T Consensus       256 ~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  286 (327)
T 3aln_A          256 REFSPSFINFVNLCLTKDESKRPKYKELLKH  286 (327)
T ss_dssp             CCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             ccCCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence            24677899999999999999999 9999763

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=1.5e-32  Score=237.04  Aligned_cols=220  Identities=16%  Similarity=0.170  Sum_probs=168.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeeec--CCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLE--TQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~--~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||+|.++...   .+.+.+|+.++++++ ||||+++++++..  ....++||||+
T Consensus        46 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~  115 (330)
T 3nsz_A           46 RGKYSEVFEAINIT-------NNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV  115 (330)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECC
T ss_pred             ccCCeEEEEEEECC-------CCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEecc
Confidence            89999999998865       89999999997543   467899999999997 9999999999987  55689999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC-ceEEeecccccccC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFSISIP  193 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~-~~kl~Dfg~a~~~~  193 (292)
                      .+++|.++++          .+++..+..++.|++.||.|||   ..+++|+||||+|||++.++ .+||+|||++....
T Consensus       116 ~~~~l~~~~~----------~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~  182 (330)
T 3nsz_A          116 NNTDFKQLYQ----------TLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH  182 (330)
T ss_dssp             CCCCHHHHGG----------GCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred             CchhHHHHHH----------hCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcC
Confidence            9999999982          3889999999999999999999   89999999999999999776 89999999998765


Q ss_pred             CCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccch-h---------------hhccc
Q 044211          194 EGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRL-N---------------EIIDP  242 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~-~---------------~~~~~  242 (292)
                      ....  .....|+..|++|+....       +     |++  +|+ |+. |+...... .               ..++.
T Consensus       183 ~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~-p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  259 (330)
T 3nsz_A          183 PGQE--YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKE-PFFHGHDNYDQLVRIAKVLGTEDLYDYIDK  259 (330)
T ss_dssp             TTCC--CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCS-SSSCCSSHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CCCc--cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCC-CcccCCchHHHHHHHHHhcCCchhhhHHHH
Confidence            4332  234567888988776433       1     888  888 654 22111100 0               00000


Q ss_pred             -------------------ccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          243 -------------------LIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       243 -------------------~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                         ..............++.+.+|+.+||+.||++|| +.|+++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h  320 (330)
T 3nsz_A          260 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  320 (330)
T ss_dssp             TTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             hccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence                               0000000011123567899999999999999999 9999873

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=1.3e-33  Score=247.77  Aligned_cols=223  Identities=8%  Similarity=-0.039  Sum_probs=153.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHHHHHhc--CCCCcccee-------eeeecC-
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIVYASQM--IHRCIFKLI-------GCCLET-  104 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l--~h~niv~~~-------~~~~~~-  104 (292)
                      +|+||.||+|.+..       +++.||+|.+.....   ...+.+.+|+.+++.|  +||||++++       +++... 
T Consensus        72 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~  144 (371)
T 3q60_A           72 VGDRSVVFLVRDVE-------RLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQS  144 (371)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEETT
T ss_pred             CCCCEEEEEEEECC-------CCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecCC
Confidence            89999999999865       899999999987532   2345677885555555  699988755       333322 


Q ss_pred             ----------------CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHH------HHHHHHHHHHHHHhhcCCCCC
Q 044211          105 ----------------QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR------LKIAMDIANAIAYLHVGFPRP  162 (292)
Q Consensus       105 ----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~------~~i~~~i~~~l~~lh~~~~~~  162 (292)
                                      ...++||||++ |+|.++++...      ..+++..+      ..++.|++.||.|||   ..+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~------~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~  214 (371)
T 3q60_A          145 QPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD------FVYVFRGDEGILALHILTAQLIRLAANLQ---SKG  214 (371)
T ss_dssp             SCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH------HSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred             CCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc------cccchhhhhhhhhHHHHHHHHHHHHHHHH---HCC
Confidence                            23799999999 89999996432      22344445      677899999999999   899


Q ss_pred             cccCCCCCCceEecCCCceEEeecccccccCCCCccchhhhhcccccccccccCC--C-----------CeE--EEc-cc
Q 044211          163 VIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNED--D-----------GYV--VLL-DH  226 (292)
Q Consensus       163 i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~--~-----------Gvi--el~-~~  226 (292)
                      |+||||||+|||++.++.+||+|||++.......    ....+++.|++||....  .           |++  ||+ |+
T Consensus       215 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~  290 (371)
T 3q60_A          215 LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRG----PASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLF  290 (371)
T ss_dssp             EEETTCSGGGEEECTTSCEEECCGGGEEETTCEE----EGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred             CccCcCCHHHEEECCCCCEEEEecceeeecCCCc----cCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999998664321    13456789988887654  1           888  888 54


Q ss_pred             hhhhhhccc-hhhhccc-----ccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          227 IKKYFEEDR-LNEIIDP-----LIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       227 ~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      . |+..... ....+..     ........+....+++.+.+|+.+||+.||++|| +.++++
T Consensus       291 ~-Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          291 L-PFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             C-STTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             C-CCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            4 4433211 1111110     0111111221235677999999999999999999 999875

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=6.7e-33  Score=237.56  Aligned_cols=225  Identities=14%  Similarity=0.213  Sum_probs=166.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcC--CCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMI--HRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||++...        +++.||+|.+...  .......+.+|+.++++++  |+||+++++++...+..++||| 
T Consensus        38 ~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-  108 (313)
T 3cek_A           38 SGGSSKVFQVLNE--------KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-  108 (313)
T ss_dssp             CCSSEEEEEEECT--------TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEEC-
T ss_pred             CCCCEEEEEEEcC--------CCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEe-
Confidence            8999999999986        8899999998654  3334577899999999997  5999999999999999999999 


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +.+++|.+++.       ....+++..+..++.|++.||.|||   ..+++|+||||+||++++ +.+||+|||++....
T Consensus       109 ~~~~~L~~~l~-------~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~  177 (313)
T 3cek_A          109 CGNIDLNSWLK-------KKKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQ  177 (313)
T ss_dssp             CCSEEHHHHHH-------HCSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC--
T ss_pred             cCCCcHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeecccccccc
Confidence            55689999994       3356899999999999999999999   899999999999999965 799999999998775


Q ss_pred             CCCcc-chhhhhcccccccccccCC-----------------C-----CeE--EEc-cchhhhhhccchhhhcccccccC
Q 044211          194 EGETH-ISELLSGLRAFDLARLNED-----------------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGD  247 (292)
Q Consensus       194 ~~~~~-~~~~~~g~~~y~~~~~~~~-----------------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~  247 (292)
                      ..... ......|++.|++||....                 +     |++  +|+ |+. |+.........+...+...
T Consensus       178 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~-pf~~~~~~~~~~~~~~~~~  256 (313)
T 3cek_A          178 PDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKT-PFQQIINQISKLHAIIDPN  256 (313)
T ss_dssp             ------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSC-TTTTCCSHHHHHHHHHCTT
T ss_pred             CccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHhcc
Confidence            43322 2234568999988887532                 1     888  888 544 3322211111111111111


Q ss_pred             CCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          248 RSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       248 ~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .....+...+..+.+++.+||+.||++|| +.++++.
T Consensus       257 ~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  293 (313)
T 3cek_A          257 HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH  293 (313)
T ss_dssp             SCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence            11111123456899999999999999999 9999864

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=5.9e-33  Score=238.16  Aligned_cols=225  Identities=18%  Similarity=0.237  Sum_probs=163.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec--------------
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE--------------  103 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--------------  103 (292)
                      +|+||.||+|.+..       +++.||+|.+........+.+.+|+.++++++||||+++++++..              
T Consensus        21 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~   93 (320)
T 2i6l_A           21 CGGNGLVFSAVDND-------CDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTE   93 (320)
T ss_dssp             -----CEEEEEETT-------TTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCS
T ss_pred             cCCCeEEEEEEECC-------CCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccc
Confidence            89999999999975       799999999987766667789999999999999999999998743              


Q ss_pred             CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec-CCCceE
Q 044211          104 TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN-EENVAK  182 (292)
Q Consensus       104 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~-~~~~~k  182 (292)
                      ....++||||+. |+|.+++        ....+++..+..++.|++.||.|||   +.+++|+||||+||+++ .++.+|
T Consensus        94 ~~~~~lv~e~~~-~~L~~~~--------~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~k  161 (320)
T 2i6l_A           94 LNSVYIVQEYME-TDLANVL--------EQGPLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLK  161 (320)
T ss_dssp             CSEEEEEEECCS-EEHHHHH--------TTCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEEE
T ss_pred             cCceeEEeeccC-CCHHHHh--------hcCCccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeEE
Confidence            356789999998 6999999        2356899999999999999999999   89999999999999997 567999


Q ss_pred             EeecccccccCCCCcc--chhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhcccccc
Q 044211          183 LFDFSFSISIPEGETH--ISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIM  245 (292)
Q Consensus       183 l~Dfg~a~~~~~~~~~--~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~  245 (292)
                      |+|||++.........  ......++..|.+|+....       +     |++  +|+ |+. |+...... ..+.....
T Consensus       162 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~-pf~~~~~~-~~~~~~~~  239 (320)
T 2i6l_A          162 IGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKT-LFAGAHEL-EQMQLILE  239 (320)
T ss_dssp             ECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSC-SSCCSSHH-HHHHHHHH
T ss_pred             EccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCC-CCCCCCHH-HHHHHHHH
Confidence            9999999876432211  1233456888888875422       1     888  888 543 33221111 00000000


Q ss_pred             c------------------------CCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          246 G------------------------DRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       246 ~------------------------~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      .                        ..+...    ....+..+.+++.+||+.||++|| +.++++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (320)
T 2i6l_A          240 SIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH  306 (320)
T ss_dssp             HSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             hcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence            0                        000000    013466899999999999999999 9999863

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.98  E-value=3.3e-33  Score=244.63  Aligned_cols=222  Identities=15%  Similarity=0.147  Sum_probs=152.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecC------CcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLET------QIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~------~~~~l  109 (292)
                      +|+||.||+|....       +++.||||.+...  .......+.+|+.+++.++||||+++++++...      ...++
T Consensus        39 ~G~~g~V~~a~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~l  111 (367)
T 2fst_X           39 SGAYGSVCAAFDTK-------TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYL  111 (367)
T ss_dssp             ----CCEEEEEETT-------TTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEE
T ss_pred             ecCCeEEEEEEECC-------CCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEE
Confidence            89999999999765       8999999998754  233456788999999999999999999998754      55799


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      |+|++ +++|.++++        ...+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++
T Consensus       112 v~e~~-~~~L~~~~~--------~~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a  179 (367)
T 2fst_X          112 VTHLM-GADLNNIVK--------CQKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLA  179 (367)
T ss_dssp             EEECC-CEECC-------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC----
T ss_pred             Eeccc-CCCHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeecccc
Confidence            99999 579999882        356999999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchh---hhcc----------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLN---EIID----------  241 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~---~~~~----------  241 (292)
                      ......    .....||..|++|+....       +     |++  ||+ |+. ++.......   .++.          
T Consensus       180 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~-pf~~~~~~~~l~~i~~~~g~p~~~~~  254 (367)
T 2fst_X          180 RHTADE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT-LFPGTDHIDQLKLILRLVGTPGAELL  254 (367)
T ss_dssp             ---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHCSCCHHHH
T ss_pred             cccccc----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence            866432    234578999988875432       2     888  888 653 332211110   0000          


Q ss_pred             -c-----------ccccCCCCCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 -P-----------LIMGDRSCSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 -~-----------~~~~~~~~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                       .           .+........   ....++.+.+|+.+||+.||++|| +.++++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          255 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             TTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence             0           0000000000   012356789999999999999999 9999864

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.98  E-value=1.8e-32  Score=240.44  Aligned_cols=220  Identities=13%  Similarity=0.151  Sum_probs=165.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcc------eE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIP------IL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~------~l  109 (292)
                      +|+||.||+|.+..       +++.||+|.+....  ......+.+|+.+++.++||||+++++++...+..      ++
T Consensus        52 ~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~l  124 (371)
T 4exu_A           52 SGAYGSVCSAIDKR-------SGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYL  124 (371)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEE
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEE
Confidence            89999999999875       89999999997642  23356789999999999999999999999876654      99


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ||||+. ++|.+++         ...+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++
T Consensus       125 v~e~~~-~~l~~~~---------~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a  191 (371)
T 4exu_A          125 VMPFMQ-TDLQKIM---------GMEFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLA  191 (371)
T ss_dssp             EEECCC-EEHHHHT---------TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC
T ss_pred             EEcccc-ccHHHHh---------hcCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcc
Confidence            999999 5998888         234999999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhccccc----------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLI----------  244 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~----------  244 (292)
                      ......    .....||+.|++|+....       +     |++  +|+ |+. |+...... +.+...+          
T Consensus       192 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~-pf~~~~~~-~~~~~i~~~~~~~~~~~  265 (371)
T 4exu_A          192 RHADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKT-LFKGKDYL-DQLTQILKVTGVPGTEF  265 (371)
T ss_dssp             ------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSC-SCCCSSHH-HHHHHHHHHHCCCCHHH
T ss_pred             cccccC----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCC-CCCCCChH-HHHHHHHHHhCCCcHHH
Confidence            866432    234567899988875433       1     888  888 543 33221111 0000000          


Q ss_pred             -------------cc--CCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          245 -------------MG--DRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       245 -------------~~--~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                   ..  ..+...    ....++.+.+|+.+||+.||++|| +.|+++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          266 VQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             HTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence                         00  000000    013467899999999999999999 9999864

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.98  E-value=5.9e-33  Score=241.68  Aligned_cols=226  Identities=16%  Similarity=0.123  Sum_probs=168.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecC-----CcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLET-----QIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-----~~~~lv~  111 (292)
                      +|+||.||+|.+..       +++.||||.+.... ......+.+|+.++++++||||+++++++...     ...++|+
T Consensus        21 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~   93 (353)
T 2b9h_A           21 EGAYGVVCSATHKP-------TGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQ   93 (353)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEE
T ss_pred             CCCCeEEEEEEECC-------CCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEE
Confidence            89999999999875       89999999997543 33446788999999999999999999988754     5689999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+. |+|.+++.        ...+++..+..++.|++.||.|||   ..+++|+||||+|||++.++.+||+|||++..
T Consensus        94 e~~~-~~L~~~~~--------~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~  161 (353)
T 2b9h_A           94 ELMQ-TDLHRVIS--------TQMLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARI  161 (353)
T ss_dssp             CCCS-EEHHHHHH--------HCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             eccC-ccHHHHHh--------hcCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEecccccc
Confidence            9998 59999983        246899999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCccc---------hhhhhcccccccccccCC----C--------CeE--EEc-cchhhhhhccchhhh---cc---
Q 044211          192 IPEGETHI---------SELLSGLRAFDLARLNED----D--------GYV--VLL-DHIKKYFEEDRLNEI---ID---  241 (292)
Q Consensus       192 ~~~~~~~~---------~~~~~g~~~y~~~~~~~~----~--------Gvi--el~-~~~~~~~~~~~~~~~---~~---  241 (292)
                      ........         .....||..|++|+....    +        |++  +|+ |+. |+.........   ..   
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~  240 (353)
T 2b9h_A          162 IDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRP-IFPGRDYRHQLLLIFGIIG  240 (353)
T ss_dssp             CC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHC
T ss_pred             cccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCC-CCCCCCcHHHHHHHHHHhC
Confidence            65322111         123467899988885322    1        888  888 543 33221110000   00   


Q ss_pred             -----------------ccccc--CCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 -----------------PLIMG--DRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 -----------------~~~~~--~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                       ..+..  ..+...    .+..++.+.+|+.+||+.||++|| +.|+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (353)
T 2b9h_A          241 TPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH  306 (353)
T ss_dssp             CCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                             00000  000000    024567899999999999999999 9999863

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.98  E-value=1.5e-32  Score=245.71  Aligned_cols=230  Identities=19%  Similarity=0.237  Sum_probs=161.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||+||.+...        +++.||||.+...   ..+.+.+|+.+++++ +||||+++++++...+..++||||+. 
T Consensus        25 ~G~~g~V~~~~~~--------~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-   92 (434)
T 2rio_A           25 YGSSGTVVFQGSF--------QGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-   92 (434)
T ss_dssp             ECSTTCEEEEEES--------SSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-
T ss_pred             eCCCeEEEEEEEE--------CCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-
Confidence            8999999765443        8999999998653   245678999999987 89999999999999999999999997 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC-------------CceEE
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE-------------NVAKL  183 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~-------------~~~kl  183 (292)
                      |+|.+++.............++..++.++.|++.||.|||   +.+|+||||||+|||++.+             +.+||
T Consensus        93 gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL  169 (434)
T 2rio_A           93 LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILI  169 (434)
T ss_dssp             EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEE
T ss_pred             CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEEEE
Confidence            6999999533221111111233456789999999999999   8999999999999999754             48999


Q ss_pred             eecccccccCCCCcc---chhhhhcccccccccccCC-------------C-----CeE--EEc-cchhhhhhccchh-h
Q 044211          184 FDFSFSISIPEGETH---ISELLSGLRAFDLARLNED-------------D-----GYV--VLL-DHIKKYFEEDRLN-E  238 (292)
Q Consensus       184 ~Dfg~a~~~~~~~~~---~~~~~~g~~~y~~~~~~~~-------------~-----Gvi--el~-~~~~~~~~~~~~~-~  238 (292)
                      +|||++.........   ......||+.|++||+...             +     |++  ||+ +...|+....... .
T Consensus       170 ~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~  249 (434)
T 2rio_A          170 SDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESN  249 (434)
T ss_dssp             CCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHHH
T ss_pred             cccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHHH
Confidence            999999887654322   1234578999998886532             1     888  888 4665554322111 1


Q ss_pred             hcccccc-cCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          239 IIDPLIM-GDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ++..... ...........++.+.+++.+||+.||++|| +.++++
T Consensus       250 i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          250 IIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             HHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence            1111111 1111122246788999999999999999999 999985

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.98  E-value=8.7e-33  Score=241.53  Aligned_cols=224  Identities=16%  Similarity=0.142  Sum_probs=160.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-----------chHHHHHHHHHHHHhcCCCCccceeeeeec---
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-----------RTYDCCINNIVYASQMIHRCIFKLIGCCLE---  103 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-----------~~~~~~~~e~~~l~~l~h~niv~~~~~~~~---  103 (292)
                      +|+||.||+|...        +++.||||.+.....           ...+.+.+|+.++++++||||+++++++..   
T Consensus        32 ~G~~g~V~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  103 (362)
T 3pg1_A           32 SGSYGAVCAGVDS--------EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEE  103 (362)
T ss_dssp             EETTEEEEEEECT--------TSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEECCT
T ss_pred             cCCCEEEEEEECC--------CCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEeccC
Confidence            8999999999986        899999999854211           123678999999999999999999999854   


Q ss_pred             --CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCce
Q 044211          104 --TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVA  181 (292)
Q Consensus       104 --~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~  181 (292)
                        ....++||||+. |+|.+++.      .....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+
T Consensus       104 ~~~~~~~lv~e~~~-~~l~~~~~------~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~  173 (362)
T 3pg1_A          104 PAMHKLYLVTELMR-TDLAQVIH------DQRIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILLADNNDI  173 (362)
T ss_dssp             TTCCEEEEEEECCS-EEHHHHHH------CTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCE
T ss_pred             CCcceEEEEEccCC-CCHHHHHH------hcccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEEEcCCCCE
Confidence              335799999999 68988883      33457999999999999999999999   8999999999999999999999


Q ss_pred             EEeecccccccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccch----------
Q 044211          182 KLFDFSFSISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRL----------  236 (292)
Q Consensus       182 kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~----------  236 (292)
                      ||+|||++........  .....|+..|++|+....       +     |++  +|+ |+. |+......          
T Consensus       174 kl~Dfg~~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~-pf~~~~~~~~~~~i~~~~  250 (362)
T 3pg1_A          174 TICDFNLAREDTADAN--KTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKA-LFRGSTFYNQLNKIVEVV  250 (362)
T ss_dssp             EECCTTC-----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHH
T ss_pred             EEEecCcccccccccc--cceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHc
Confidence            9999999975543322  234568888988886433       1     888  888 543 22221100          


Q ss_pred             ----------------hhhcccccccCCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          237 ----------------NEIIDPLIMGDRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       237 ----------------~~~~~~~~~~~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                      ...+....... +...    ....++.+.+|+.+||+.||++|| +.|+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  317 (362)
T 3pg1_A          251 GTPKIEDVVMFSSPSARDYLRNSLSNV-PARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH  317 (362)
T ss_dssp             CCCCHHHHHHTSCHHHHHHTTTCCCCC-CCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CCCChHHhhhccchhhhHHHHhhcccC-ChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence                            00000001100 0000    013356799999999999999999 9999864

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.98  E-value=9.9e-33  Score=243.11  Aligned_cols=225  Identities=16%  Similarity=0.157  Sum_probs=165.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecC-------------
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLET-------------  104 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-------------  104 (292)
                      +|+||.||+|....       +++.||+|.+......    ..+|+.+++.++||||+++++++...             
T Consensus        17 ~G~fg~V~~a~~~~-------~~~~vAiK~~~~~~~~----~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~   85 (383)
T 3eb0_A           17 TGSFGIVCEVFDIE-------SGKRFALKKVLQDPRY----KNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDD   85 (383)
T ss_dssp             CC-CEEEEEEEETT-------TCCEEEEEEEECCTTS----CCHHHHHHTTCCCTTBCCEEEEEEEC-------------
T ss_pred             eccCEEEEEEEECC-------CCCEEEEEEEecCcch----HHHHHHHHHHcCCCCccchhheeeecCcccccccccccc
Confidence            89999999999865       8999999998755322    23799999999999999999998543             


Q ss_pred             -------------------------CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 044211          105 -------------------------QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF  159 (292)
Q Consensus       105 -------------------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~  159 (292)
                                               ...++||||++ |+|.+.+....   .....+++..+..++.|++.||.|||   
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~---~~~~~l~~~~~~~i~~qi~~aL~~LH---  158 (383)
T 3eb0_A           86 HNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFI---RSGRSIPMNLISIYIYQLFRAVGFIH---  158 (383)
T ss_dssp             ------------------------CCEEEEEECCCS-EEHHHHHHHHH---HTTCCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             cccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence                                     23789999999 58888875332   23567999999999999999999999   


Q ss_pred             CCCcccCCCCCCceEec-CCCceEEeecccccccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc
Q 044211          160 PRPVIFRDFKLSNILFN-EENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL  224 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~  224 (292)
                      ..+|+||||||+|||++ .++.+||+|||++........  .....||..|++|+....       +     |++  ||+
T Consensus       159 ~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell  236 (383)
T 3eb0_A          159 SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP--SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELI  236 (383)
T ss_dssp             TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC--CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHH
T ss_pred             HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC--CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHH
Confidence            89999999999999998 688999999999987654332  234567888988875322       1     888  888


Q ss_pred             -cchhhhhhccchhhhcc-----------------ccccc-CCC---CC-----CchHHHHHHHHHHhHhcCCCCCCCC-
Q 044211          225 -DHIKKYFEEDRLNEIID-----------------PLIMG-DRS---CS-----GNQQQLQAFAHLIFECVNESPVDRP-  276 (292)
Q Consensus       225 -~~~~~~~~~~~~~~~~~-----------------~~~~~-~~~---~~-----~~~~~~~~l~~li~~Cl~~dP~~RP-  276 (292)
                       |+. |+...........                 +.... ..+   ..     .+...++.+.+|+.+||+.||++|| 
T Consensus       237 ~g~~-pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  315 (383)
T 3eb0_A          237 LGKP-LFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRIN  315 (383)
T ss_dssp             HSSC-SSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCC
T ss_pred             hCCC-CCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCC
Confidence             653 3332221111100                 00000 000   00     0123466799999999999999999 


Q ss_pred             HHHHHHH
Q 044211          277 MVDVAKK  283 (292)
Q Consensus       277 ~~el~~~  283 (292)
                      +.|+++.
T Consensus       316 ~~e~l~h  322 (383)
T 3eb0_A          316 PYEAMAH  322 (383)
T ss_dssp             HHHHHTS
T ss_pred             HHHHhcC
Confidence            9999853

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.98  E-value=3.2e-32  Score=235.79  Aligned_cols=223  Identities=16%  Similarity=0.222  Sum_probs=148.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec----CCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE----TQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~----~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       +++.||+|.+....    ....+....++.+.||||+++++++..    ....++||||
T Consensus        39 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~  107 (336)
T 3fhr_A           39 LGVNGKVLECFHRR-------TGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMEC  107 (336)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEEC
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEec
Confidence            89999999999875       89999999987541    222223334566799999999999976    3458999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC---CCceEEeeccccc
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE---ENVAKLFDFSFSI  190 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~---~~~~kl~Dfg~a~  190 (292)
                      +++|+|.+++...     ....+++..++.++.|++.||.|||   ..+++|+||||+||+++.   ++.+||+|||++.
T Consensus       108 ~~gg~L~~~l~~~-----~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~  179 (336)
T 3fhr_A          108 MEGGELFSRIQER-----GDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAK  179 (336)
T ss_dssp             CTTEEHHHHHHTC------CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred             cCCCCHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEeccccce
Confidence            9999999999422     2357999999999999999999999   889999999999999986   4559999999998


Q ss_pred             ccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchh---hhcccccccC--CCCC
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLN---EIIDPLIMGD--RSCS  251 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~---~~~~~~~~~~--~~~~  251 (292)
                      ......   .....||+.|++|+.....           |++  +|+ |.. |+.......   ..........  .+.+
T Consensus       180 ~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (336)
T 3fhr_A          180 ETTQNA---LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFP-PFYSNTGQAISPGMKRRIRLGQYGFPNP  255 (336)
T ss_dssp             EC-------------------------CHHHHHHHHHHHHHHHHHHHHSSC-CC---------------------CCCTT
T ss_pred             eccccc---cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCC-CCCCccchhhhhhHHHhhhccccccCch
Confidence            665332   2345678999988876433           888  888 544 332221110   0011111111  1111


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ....++..+.+|+.+||+.||++|| +.|+++.
T Consensus       256 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  288 (336)
T 3fhr_A          256 EWSEVSEDAKQLIRLLLKTDPTERLTITQFMNH  288 (336)
T ss_dssp             TSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             hhccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            1235677899999999999999999 9999874

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.98  E-value=3.5e-32  Score=237.03  Aligned_cols=221  Identities=14%  Similarity=0.154  Sum_probs=165.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCc------ceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQI------PIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~------~~l  109 (292)
                      +|+||.||+|.+..       +++.||||.+....  ......+.+|+.+++.++||||+++++++.....      .++
T Consensus        34 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~l  106 (353)
T 3coi_A           34 SGAYGSVCSAIDKR-------SGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYL  106 (353)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEE
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEE
Confidence            89999999999865       89999999997642  2334678999999999999999999999987654      499


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ||||+. |+|.+++         ...+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+|||++
T Consensus       107 v~e~~~-~~l~~~~---------~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~  173 (353)
T 3coi_A          107 VMPFMQ-TDLQKIM---------GLKFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLA  173 (353)
T ss_dssp             EEECCS-EEGGGTT---------TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCT
T ss_pred             Eecccc-CCHHHHh---------cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecccc
Confidence            999998 5998887         234899999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchh---hh------------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLN---EI------------  239 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~---~~------------  239 (292)
                      ......    .....|+..|++|+....       +     |++  +|+ |.. |+.......   .+            
T Consensus       174 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~-pf~~~~~~~~~~~i~~~~~~~~~~~~  248 (353)
T 3coi_A          174 RHADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKT-LFKGKDYLDQLTQILKVTGVPGTEFV  248 (353)
T ss_dssp             TC------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSC-SSBSSCHHHHHHHHHHHHCBCCHHHH
T ss_pred             cCCCCC----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence            865432    233567889988875432       2     888  888 543 332211100   00            


Q ss_pred             -----------cccccccCC-CC-CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          240 -----------IDPLIMGDR-SC-SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       240 -----------~~~~~~~~~-~~-~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                 +........ .. ......++.+.+|+.+||+.||++|| +.++++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  306 (353)
T 3coi_A          249 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  306 (353)
T ss_dssp             TTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence                       000000000 00 00125577899999999999999999 9999863

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.98  E-value=1.6e-32  Score=247.87  Aligned_cols=231  Identities=16%  Similarity=0.174  Sum_probs=173.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCC-CCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIH-RCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||||+++....  ...+..|+.+++.++| +++..+..++...+..++||||+ +
T Consensus        17 ~G~fG~Vy~a~~~~-------~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-g   86 (483)
T 3sv0_A           17 SGSFGEIYLGTNIQ-------TNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-G   86 (483)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-C
T ss_pred             eCCCEEEEEEEECC-------CCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-C
Confidence            89999999999865       899999999875432  2347899999999987 55666666666778889999999 7


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe---cCCCceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF---NEENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili---~~~~~~kl~Dfg~a~~~~  193 (292)
                      ++|.+++...      ...+++..++.|+.||+.||.|||   ..+|+||||||+||||   +.++.+||+|||++..+.
T Consensus        87 ~sL~~ll~~~------~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~  157 (483)
T 3sv0_A           87 PSLEDLFNFC------SRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYR  157 (483)
T ss_dssp             CBHHHHHHHT------TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred             CCHHHHHHhh------cCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcceecc
Confidence            8999999422      456999999999999999999999   8999999999999999   588999999999998775


Q ss_pred             CCCcc------chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc--chhhhcc----cccccC
Q 044211          194 EGETH------ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED--RLNEIID----PLIMGD  247 (292)
Q Consensus       194 ~~~~~------~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~--~~~~~~~----~~~~~~  247 (292)
                      .....      ......||..|++++.....           |++  ||+ |+. |+....  .....+.    ..+...
T Consensus       158 ~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~-Pf~~~~~~~~~~~~~~i~~~~~~~~  236 (483)
T 3sv0_A          158 DTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSL-PWQGLKAGTKKQKYEKISEKKVATS  236 (483)
T ss_dssp             CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC-TTSSCCCSSHHHHHHHHHHHHHHSC
T ss_pred             CCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCC-CCccccchhHHHHHHHHhhcccccc
Confidence            44321      12356789999888765432           888  888 544 332211  1111111    111000


Q ss_pred             CCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          248 RSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       248 ~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .. .....++..+.+|+.+||+.||++|| +.+|++.|+++..
T Consensus       237 ~~-~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~  278 (483)
T 3sv0_A          237 IE-ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFI  278 (483)
T ss_dssp             HH-HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred             HH-HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence            00 00013356899999999999999999 9999999998754

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.5e-32  Score=243.74  Aligned_cols=179  Identities=18%  Similarity=0.193  Sum_probs=128.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..     ..+++.||+|.+....  ....+.+|+.++++++||||+++++++..  ....++||||+.
T Consensus        31 ~G~~g~Vy~~~~~~-----~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~  103 (405)
T 3rgf_A           31 RGTYGHVYKAKRKD-----GKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE  103 (405)
T ss_dssp             -----EEEEEEESS-----SSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS
T ss_pred             ecCCeEEEEEEEcc-----CCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC
Confidence            89999999999641     0157899999997543  23568899999999999999999999954  667899999998


Q ss_pred             CCChhHHhhhhCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe----cCCCceEEeecccc
Q 044211          116 CGSLADRIRIHHT--PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF----NEENVAKLFDFSFS  189 (292)
Q Consensus       116 ~gsL~~~l~~~~~--~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili----~~~~~~kl~Dfg~a  189 (292)
                       |+|.+++..+..  .......+++..+..++.|++.||.|||   ..+|+||||||+|||+    +.++.+||+|||++
T Consensus       104 -~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a  179 (405)
T 3rgf_A          104 -HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFA  179 (405)
T ss_dssp             -EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCC
T ss_pred             -CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCc
Confidence             589888853321  1123346999999999999999999999   8999999999999999    67789999999999


Q ss_pred             cccCCCCc--cchhhhhcccccccccccCCC------------CeE--EEc-cch
Q 044211          190 ISIPEGET--HISELLSGLRAFDLARLNEDD------------GYV--VLL-DHI  227 (292)
Q Consensus       190 ~~~~~~~~--~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~  227 (292)
                      ..+.....  .......||+.|++||+....            |++  +|+ |+.
T Consensus       180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~  234 (405)
T 3rgf_A          180 RLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEP  234 (405)
T ss_dssp             C----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             eecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCC
Confidence            87754322  223456789999888865431            888  888 543

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.97  E-value=8.5e-32  Score=229.32  Aligned_cols=208  Identities=17%  Similarity=0.288  Sum_probs=157.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHH-HhcCCCCccceeeeeec----CCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYA-SQMIHRCIFKLIGCCLE----TQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~~~~~~~~----~~~~~lv~e  112 (292)
                      +|+||.||++....       +++.||+|.++..     ..+.+|+..+ +.++||||+++++++..    ....++|||
T Consensus        28 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e   95 (299)
T 3m2w_A           28 LGINGKVLQIFNKR-------TQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME   95 (299)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEC
T ss_pred             cCCCeEEEEEEEcC-------CCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEe
Confidence            89999999999865       8999999999753     4567888888 55589999999999876    667899999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC---CCceEEeecccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE---ENVAKLFDFSFS  189 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~---~~~~kl~Dfg~a  189 (292)
                      |+++|+|.+++...     ....+++..+..++.|++.||.|||   ..+++|+||||+||+++.   ++.+||+|||++
T Consensus        96 ~~~~~~L~~~l~~~-----~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a  167 (299)
T 3m2w_A           96 CLDGGELFSRIQDR-----GDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  167 (299)
T ss_dssp             CCCSCBHHHHHHHC-----TTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred             ecCCCcHHHHHHhc-----cCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEeccccc
Confidence            99999999999532     2356999999999999999999999   899999999999999997   788999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCCC-----CeE--EEc-cchhhhhhccchh---hhcccccccCCCCCC--chHH
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNEDD-----GYV--VLL-DHIKKYFEEDRLN---EIIDPLIMGDRSCSG--NQQQ  256 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----Gvi--el~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~  256 (292)
                      .......                 ++.++     |++  +|+ |.. |+.......   .............+.  ....
T Consensus       168 ~~~~~~~-----------------~~~~~DiwslG~il~el~tg~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (299)
T 3m2w_A          168 KETTGEK-----------------YDKSCDMWSLGVIMYILLCGYP-PFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEV  229 (299)
T ss_dssp             EECTTCG-----------------GGGHHHHHHHHHHHHHHHHSSC-SCCC-------CCSCCSSCTTCCSSCHHHHTTS
T ss_pred             ccccccc-----------------CCchhhHHHHHHHHHHHHHCCC-CCCCCcchhhhHHHHHHHhhccccCCchhcccC
Confidence            7664322                 12222     777  777 543 332221111   111111111111111  0245


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ++.+.+++.+||+.||++|| +.|+++.
T Consensus       230 ~~~~~~li~~~l~~dP~~Rps~~e~l~h  257 (299)
T 3m2w_A          230 SEEVKMLIRNLLKTEPTQRMTITEFMNH  257 (299)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            77899999999999999999 9999874

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.97  E-value=4e-32  Score=242.53  Aligned_cols=223  Identities=15%  Similarity=0.161  Sum_probs=160.0

Q ss_pred             ccCCCeeE-eeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLY-EGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~-~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+|+ ++..         +++.||||.+......   .+.+|+.+++.+ +||||+++++++......++||||+.
T Consensus        34 ~G~~G~V~~~~~~---------~~~~vAvK~~~~~~~~---~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~  101 (432)
T 3p23_A           34 HGAEGTIVYRGMF---------DNRDVAVKRILPECFS---FADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA  101 (432)
T ss_dssp             ECGGGCEEEEEES---------SSSEEEEEEECTTTEE---ECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             cCcCEEEEEEEEe---------CCeEEEEEEECHHHHH---HHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC
Confidence            89999854 4444         8999999999764322   256899999999 79999999999999999999999998


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-----CCceEEeeccccc
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-----ENVAKLFDFSFSI  190 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-----~~~~kl~Dfg~a~  190 (292)
                       |+|.+++..      ....+.+..+..++.|++.||.|||   +.+|+||||||+|||++.     ...+||+|||++.
T Consensus       102 -g~L~~~l~~------~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~  171 (432)
T 3p23_A          102 -ATLQEYVEQ------KDFAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCK  171 (432)
T ss_dssp             -EEHHHHHHS------SSCCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEE
T ss_pred             -CCHHHHHHh------cCCCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEeccccee
Confidence             599999942      2233444566789999999999999   899999999999999953     2358899999998


Q ss_pred             ccCCCCc--cchhhhhcccccccccccCC---------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          191 SIPEGET--HISELLSGLRAFDLARLNED---------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       191 ~~~~~~~--~~~~~~~g~~~y~~~~~~~~---------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      .......  .......||+.|++||+...         +     |++  ||+ +...|+.....................
T Consensus       172 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~  251 (432)
T 3p23_A          172 KLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLH  251 (432)
T ss_dssp             CC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHHTTCCCCTTSC
T ss_pred             eccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHhccCCccccC
Confidence            7754322  22344678999999987642         1     888  888 466555332211111000000111111


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .....+..+.+|+.+||+.||++|| +.++++
T Consensus       252 ~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          252 PEKHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             TTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence            1235677789999999999999999 999984

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.97  E-value=9.8e-32  Score=227.55  Aligned_cols=212  Identities=12%  Similarity=0.033  Sum_probs=161.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +++.||+|.+.....   .....+.+|+..+++++||||+++++++...+..++||||+
T Consensus        41 ~G~~g~Vy~a~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  113 (286)
T 3uqc_A           41 GVPPLQFWQALDTA-------LDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWI  113 (286)
T ss_dssp             BSTTCEEEEEEETT-------TTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             ccCCeEEEEEEecC-------CCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEEec
Confidence            89999999999975       799999999976432   33467999999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++++|.++++        .. .....+..++.|++.||.|||   ..+|+|+||||+|||++.++.+||++++...    
T Consensus       114 ~g~~L~~~l~--------~~-~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~~~~----  177 (286)
T 3uqc_A          114 RGGSLQEVAD--------TS-PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPATMP----  177 (286)
T ss_dssp             CEEEHHHHHT--------TC-CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCCCCT----
T ss_pred             CCCCHHHHHh--------cC-CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEeccccC----
Confidence            9999999992        12 355678999999999999999   8999999999999999999999998665431    


Q ss_pred             CCccchhhhhcccccccccccCCC-----CeE--EEccchhhhhhccchhhh--cccccccCCCCC--CchHHHHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----GYV--VLLDHIKKYFEEDRLNEI--IDPLIMGDRSCS--GNQQQLQAFAHL  263 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----Gvi--el~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~l~~l  263 (292)
                                        .++.++     |++  ||+....|+........+  ....+.+..+.+  ....+++.+.++
T Consensus       178 ------------------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  239 (286)
T 3uqc_A          178 ------------------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAV  239 (286)
T ss_dssp             ------------------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHH
T ss_pred             ------------------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHH
Confidence                              112222     777  788333344333221111  111112211110  012456789999


Q ss_pred             HhHhcCCCCCCCCHHHHHHHHHHhhhc
Q 044211          264 IFECVNESPVDRPMVDVAKKTQANVCS  290 (292)
Q Consensus       264 i~~Cl~~dP~~RP~~el~~~L~~l~~~  290 (292)
                      +.+||+.||++|-+.|+++.|+++...
T Consensus       240 i~~~l~~dP~~Rs~~el~~~L~~~~~~  266 (286)
T 3uqc_A          240 AARSVQGDGGIRSASTLLNLMQQATAV  266 (286)
T ss_dssp             HHHHHCTTSSCCCHHHHHHHHHHHHC-
T ss_pred             HHHHcccCCccCCHHHHHHHHHHHhcc
Confidence            999999999999999999999987643

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.97  E-value=1.9e-32  Score=244.07  Aligned_cols=225  Identities=18%  Similarity=0.169  Sum_probs=164.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecC------CcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLET------QIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~------~~~~lv~  111 (292)
                      +|+||.||+|.+..       +++.||||.+......    ..+|+.+++.++||||+++++++...      ..+++||
T Consensus        64 ~G~fg~Vy~~~~~~-------~~~~vaiK~~~~~~~~----~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~  132 (420)
T 1j1b_A           64 NGSFGVVYQAKLCD-------SGELVAIKKVLQDKRF----KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVL  132 (420)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEECCTTS----CCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEE
T ss_pred             eCCCEEEEEEEECC-------CCcEEEEEEecccchh----HHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeeh
Confidence            89999999999975       7999999998754321    23799999999999999999998642      1267899


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC-CceEEeeccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE-NVAKLFDFSFSI  190 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~-~~~kl~Dfg~a~  190 (292)
                      ||+.+ +|.+.+....   .....+++..+..++.|++.||.|||   ..+|+||||||+|||++.+ +.+||+|||+++
T Consensus       133 e~~~~-~l~~~~~~~~---~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~  205 (420)
T 1j1b_A          133 DYVPE-TVYRVARHYS---RAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK  205 (420)
T ss_dssp             ECCCE-EHHHHHHHHH---HTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             hcccc-cHHHHHHHHh---hccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchhhh
Confidence            99995 7777764321   23567999999999999999999999   8999999999999999955 678999999998


Q ss_pred             ccCCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchh---hhcc-----------
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLN---EIID-----------  241 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~---~~~~-----------  241 (292)
                      .+.....  .....||..|++||+....            |++  ||+ |+. +|.......   .++.           
T Consensus       206 ~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~-pf~~~~~~~~l~~i~~~lg~p~~~~~~  282 (420)
T 1j1b_A          206 QLVRGEP--NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP-IFPGDSGVDQLVEIIKVLGTPTREQIR  282 (420)
T ss_dssp             ECCTTCC--CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC-SSCCSSHHHHHHHHHHHHCSCCHHHHH
T ss_pred             hcccCCC--ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            7654332  2335689999888864321            888  888 654 332221111   1110           


Q ss_pred             ---ccccc-CCCC---C-----CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 ---PLIMG-DRSC---S-----GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 ---~~~~~-~~~~---~-----~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                         +.... ..+.   .     .+...++.+.+|+.+||+.||.+|| +.|+++.
T Consensus       283 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h  337 (420)
T 1j1b_A          283 EMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH  337 (420)
T ss_dssp             HHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence               00000 0000   0     0013457899999999999999999 9998863

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.97  E-value=8.3e-32  Score=240.49  Aligned_cols=169  Identities=16%  Similarity=0.141  Sum_probs=140.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc------CCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM------IHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||+|....       +++.||||++... ......+.+|+.+++.+      .|+||+++++++...+..++||
T Consensus       107 ~G~fg~V~~a~~~~-------~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~  178 (429)
T 3kvw_A          107 KGSFGQVVKAYDHK-------VHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTF  178 (429)
T ss_dssp             ESSSEEEEEEEETT-------TTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEE
T ss_pred             cCccEEEEEEEECC-------CCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEE
Confidence            89999999998875       7899999999764 23345678888888887      5679999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc--eEEeecccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV--AKLFDFSFS  189 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~--~kl~Dfg~a  189 (292)
                      ||+. ++|.+++...     ....+++..+..++.|++.||.|||   ..+|+||||||+|||++.++.  +||+|||++
T Consensus       179 e~~~-~~L~~~l~~~-----~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a  249 (429)
T 3kvw_A          179 ELLS-MNLYELIKKN-----KFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGSS  249 (429)
T ss_dssp             CCCC-CBHHHHHHHT-----TTCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred             eccC-CCHHHHHHhc-----cCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeecccc
Confidence            9997 6999999533     2345899999999999999999999   889999999999999999887  999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC------C-----CeE--EEc-cch
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHI  227 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~  227 (292)
                      .......    ....||+.|++||+...      +     |++  ||+ |..
T Consensus       250 ~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~  297 (429)
T 3kvw_A          250 CYEHQRV----YTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYP  297 (429)
T ss_dssp             EETTCCC----CSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             eecCCcc----cccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCC
Confidence            7654322    23578899988876432      2     888  888 643

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.1e-32  Score=236.10  Aligned_cols=216  Identities=19%  Similarity=0.239  Sum_probs=165.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc------hHHHHHHHHHHHHhc----CCCCccceeeeeecCCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR------TYDCCINNIVYASQM----IHRCIFKLIGCCLETQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~------~~~~~~~e~~~l~~l----~h~niv~~~~~~~~~~~~  107 (292)
                      +|+||.||+|.+..       +++.||+|.++.....      ....+.+|+.++.++    +|+||+++++++...+..
T Consensus        41 ~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~~  113 (312)
T 2iwi_A           41 KGGFGTVFAGHRLT-------DRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGF  113 (312)
T ss_dssp             EETTEEEEEEECTT-------TCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-----C
T ss_pred             cCCCEEEEEEEEcc-------CCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCeE
Confidence            89999999999865       8899999999654321      123456799999998    899999999999998999


Q ss_pred             eEEEec-cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec-CCCceEEee
Q 044211          108 ILVFEY-INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN-EENVAKLFD  185 (292)
Q Consensus       108 ~lv~e~-~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~-~~~~~kl~D  185 (292)
                      ++|+|+ +.+++|.+++..       ...+++..++.++.|++.||.|||   ..+++|+||+|+||+++ .++.+||+|
T Consensus       114 ~~v~e~~~~~~~L~~~l~~-------~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~d  183 (312)
T 2iwi_A          114 MLVLERPLPAQDLFDYITE-------KGPLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKLID  183 (312)
T ss_dssp             EEEEECCSSEEEHHHHHHH-------HCSCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEEECC
T ss_pred             EEEEEecCCCCCHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEEEEE
Confidence            999999 788999999943       345899999999999999999999   89999999999999999 889999999


Q ss_pred             cccccccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCC
Q 044211          186 FSFSISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       186 fg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      ||++........   ....|+..|.+||....       +     |++  +|+ |+. ++.....   .....    ...
T Consensus       184 fg~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~---~~~~~----~~~  252 (312)
T 2iwi_A          184 FGSGALLHDEPY---TDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDI-PFERDQE---ILEAE----LHF  252 (312)
T ss_dssp             CSSCEECCSSCB---CCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSC-SCCSHHH---HHHTC----CCC
T ss_pred             cchhhhcccCcc---cccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCC-CCCChHH---Hhhhc----cCC
Confidence            999987754322   33568888988875421       1     888  888 543 3322211   11111    111


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +  ...+..+.+++.+||+.||++|| +.|+++.
T Consensus       253 ~--~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  284 (312)
T 2iwi_A          253 P--AHVSPDCCALIRRCLAPKPSSRPSLEEILLD  284 (312)
T ss_dssp             C--TTSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             c--ccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            1  24566899999999999999999 9999873

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.97  E-value=5.2e-32  Score=232.27  Aligned_cols=226  Identities=17%  Similarity=0.219  Sum_probs=157.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hH-HHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TY-DCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~-~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|.+..       +++.||+|.+...... .. +.+.++..+++.++||||+++++++...+..++||||+ 
T Consensus        35 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-  106 (318)
T 2dyl_A           35 SGTCGQVWKMRFRK-------TGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-  106 (318)
T ss_dssp             -----CEEEEEETT-------TCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC-
T ss_pred             ecCCeeEEEEEEec-------CCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEecc-
Confidence            89999999999875       8999999999765332 22 23445555778889999999999999999999999999 


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR-PVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~-~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++.+..+....      ...+++..+..++.|++.||.|||   .. +++|+||+|+||+++.++.+||+|||++.....
T Consensus       107 ~~~~~~l~~~~------~~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  177 (318)
T 2dyl_A          107 GTCAEKLKKRM------QGPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVD  177 (318)
T ss_dssp             SEEHHHHHHHH------TSCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred             CCcHHHHHHHh------ccCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence            45666555322      356899999999999999999999   74 999999999999999999999999999976644


Q ss_pred             CCccchhhhhcccccccccccC-----------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC-Cch
Q 044211          195 GETHISELLSGLRAFDLARLNE-----------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS-GNQ  254 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~-----------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  254 (292)
                      ...  .....|++.|.+|+...           ++     |++  +|+ |. .|+.........+.....+..+.. ...
T Consensus       178 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~-~pf~~~~~~~~~~~~~~~~~~~~~~~~~  254 (318)
T 2dyl_A          178 DKA--KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQ-FPYKNCKTDFEVLTKVLQEEPPLLPGHM  254 (318)
T ss_dssp             -----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSS-CTTTTCCSHHHHHHHHHHSCCCCCCSSS
T ss_pred             Ccc--ccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCC-CCCCCCCccHHHHHHHhccCCCCCCccC
Confidence            322  23456888998887753           11     888  888 54 344332222222222222222211 112


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      ..++.+.+++.+||+.||.+|| +.++++.
T Consensus       255 ~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (318)
T 2dyl_A          255 GFSGDFQSFVKDCLTKDHRKRPKYNKLLEH  284 (318)
T ss_dssp             CCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             CCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            4567899999999999999999 9998863

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.97  E-value=1.9e-31  Score=230.46  Aligned_cols=229  Identities=17%  Similarity=0.169  Sum_probs=171.0

Q ss_pred             ccCCCeeEeeec-CCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCC------ccceeeeeecCCcceEE
Q 044211           38 IKNGYKLYEGFF-QNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRC------IFKLIGCCLETQIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~-~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~~~~~~~~~~~~~lv  110 (292)
                      +|+||.||+|.+ ..       +++.||+|.++.. ....+.+.+|+.+++.++|+|      ++++++++...+..++|
T Consensus        24 ~G~~g~V~~~~~~~~-------~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv   95 (339)
T 1z57_A           24 EGAFGKVVECIDHKA-------GGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIV   95 (339)
T ss_dssp             EETTEEEEEEEETTT-------TTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEE
T ss_pred             cCCCeEEEEEEecCC-------CCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEE
Confidence            899999999986 32       7889999999754 234567889999999987654      99999999999999999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-------------
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-------------  177 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-------------  177 (292)
                      |||+ +++|.+++...     ....+++..+..++.|++.||.|||   +.+++|+||||+|||++.             
T Consensus        96 ~e~~-~~~l~~~l~~~-----~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~  166 (339)
T 1z57_A           96 FELL-GLSTYDFIKEN-----GFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKR  166 (339)
T ss_dssp             EECC-CCBHHHHHHHT-----TTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----C
T ss_pred             EcCC-CCCHHHHHHhc-----CCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCcccc
Confidence            9999 68999999532     2346899999999999999999999   899999999999999987             


Q ss_pred             ------CCceEEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccch-
Q 044211          178 ------ENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRL-  236 (292)
Q Consensus       178 ------~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~-  236 (292)
                            ++.+||+|||++.......    ....||..|++||.....           |++  ||+ |.. |+...... 
T Consensus       167 ~~~~~~~~~~kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~-pf~~~~~~~  241 (339)
T 1z57_A          167 DERTLINPDIKVVDFGSATYDDEHH----STLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFT-VFPTHDSKE  241 (339)
T ss_dssp             EEEEESCCCEEECCCSSCEETTSCC----CSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSC-SCCCSCHHH
T ss_pred             ccccccCCCceEeeCcccccCcccc----ccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCC-CCCCCChHH
Confidence                  6689999999998654322    335688999888765432           888  888 644 22111100 


Q ss_pred             -hhhccccccc---------------------------------------CCCCCCchHHHHHHHHHHhHhcCCCCCCCC
Q 044211          237 -NEIIDPLIMG---------------------------------------DRSCSGNQQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       237 -~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                       ...+......                                       ..........++.+.+|+.+||+.||.+||
T Consensus       242 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp  321 (339)
T 1z57_A          242 HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRI  321 (339)
T ss_dssp             HHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred             HHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccccc
Confidence             0000000000                                       000011135678899999999999999999


Q ss_pred             -HHHHHHH--HHHhh
Q 044211          277 -MVDVAKK--TQANV  288 (292)
Q Consensus       277 -~~el~~~--L~~l~  288 (292)
                       +.|+++.  ++.++
T Consensus       322 t~~ell~hp~f~~~~  336 (339)
T 1z57_A          322 TLREALKHPFFDLLK  336 (339)
T ss_dssp             CHHHHTTSGGGGGGG
T ss_pred             CHHHHhcCHHHHHHh
Confidence             9999864  44443

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.97  E-value=1.3e-32  Score=236.60  Aligned_cols=216  Identities=18%  Similarity=0.233  Sum_probs=169.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc------hHHHHHHHHHHHHhcC--CCCccceeeeeecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR------TYDCCINNIVYASQMI--HRCIFKLIGCCLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~------~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~~~~l  109 (292)
                      +|+||.||+|.+..       +++.||+|.+......      ....+.+|+.++++++  |+||+++++++...+..++
T Consensus        53 ~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~l  125 (320)
T 3a99_A           53 SGGFGSVYSGIRVS-------DNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVL  125 (320)
T ss_dssp             SSSSCEEEEEEETT-------TTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEE
T ss_pred             eCCCeEEEEEEECC-------CCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEE
Confidence            89999999999865       8999999998653211      1234678999999996  5999999999999999999


Q ss_pred             EEeccCC-CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec-CCCceEEeecc
Q 044211          110 VFEYINC-GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN-EENVAKLFDFS  187 (292)
Q Consensus       110 v~e~~~~-gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~-~~~~~kl~Dfg  187 (292)
                      |+|++.+ ++|.+++..       ...+++..+..++.|++.||.|||   +.+++|+||||+|||++ +++.+||+|||
T Consensus       126 v~e~~~~~~~L~~~l~~-------~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg  195 (320)
T 3a99_A          126 ILERPEPVQDLFDFITE-------RGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFG  195 (320)
T ss_dssp             EEECCSSEEEHHHHHHH-------HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred             EEEcCCCCccHHHHHhc-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence            9999986 899999942       356899999999999999999999   89999999999999999 78899999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (292)
                      ++........   ....||..|++||....       +     |++  ||+ |+. |+......   ...    ....+ 
T Consensus       196 ~~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~-pf~~~~~~---~~~----~~~~~-  263 (320)
T 3a99_A          196 SGALLKDTVY---TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI-PFEHDEEI---IRG----QVFFR-  263 (320)
T ss_dssp             TCEECCSSCB---CCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSC-SCCSHHHH---HHC----CCCCS-
T ss_pred             cccccccccc---cCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCC-CCCChhhh---hcc----ccccc-
Confidence            9987754322   33568899988875421       1     888  888 544 33222111   111    11111 


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                       ...++.+.+++.+||+.||++|| +.++++.
T Consensus       264 -~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  294 (320)
T 3a99_A          264 -QRVSSECQHLIRWCLALRPSDRPTFEEIQNH  294 (320)
T ss_dssp             -SCCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             -ccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             24456899999999999999999 9999863

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.97  E-value=2.2e-31  Score=246.27  Aligned_cols=234  Identities=15%  Similarity=0.158  Sum_probs=174.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeec------CCcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE------TQIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~------~~~~~lv  110 (292)
                      +|+||.||+|.+..       +++.||+|.++.. .......+.+|+.++++++||||+++++++..      .+..++|
T Consensus        24 ~G~fG~Vyla~~~~-------tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LV   96 (676)
T 3qa8_A           24 TGGFGYVLRWIHQD-------TGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLA   96 (676)
T ss_dssp             BCSSSBCCCCCCTT-------TTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCE
T ss_pred             eCCCeEEEEEEECC-------CCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEE
Confidence            89999999999865       8999999998764 33445679999999999999999999999765      6678999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc---eEEeecc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV---AKLFDFS  187 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~---~kl~Dfg  187 (292)
                      |||+++|+|.+++....    ....+++..+..++.|++.||.|||   ..+++|+||+|+||+++.++.   +||+|||
T Consensus        97 mEy~~ggsL~~~L~~~~----~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DFG  169 (676)
T 3qa8_A           97 MEYCEGGDLRKYLNQFE----NCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLG  169 (676)
T ss_dssp             EECCSSCBHHHHHHSSS----CTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred             EEeCCCCCHHHHHHhcc----cCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEcccc
Confidence            99999999999995322    2346888999999999999999999   899999999999999997664   9999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchh-------------hhc
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLN-------------EII  240 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~-------------~~~  240 (292)
                      ++........  .....|+..|.+|+.....           |++  +|+ |.. |+.......             ...
T Consensus       170 ~a~~~~~~~~--~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~-Pf~~~~~~~~~~~~i~~~~~~~~~~  246 (676)
T 3qa8_A          170 YAKELDQGEL--CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFR-PFLPNWQPVQWHGKVREKSNEHIVV  246 (676)
T ss_dssp             CCCBTTSCCC--CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCS-SCCSSCHHHHSSTTCC------CCS
T ss_pred             cccccccccc--cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCC-CCCcccchhhhhhhhhcccchhhhh
Confidence            9987754432  2345789999888876432           888  888 543 332211100             001


Q ss_pred             ccccccC------CC--CCCchHHHHHHHHHHhHhcCCCCCCCC-HHH-----HHHHHHHhh
Q 044211          241 DPLIMGD------RS--CSGNQQQLQAFAHLIFECVNESPVDRP-MVD-----VAKKTQANV  288 (292)
Q Consensus       241 ~~~~~~~------~~--~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~e-----l~~~L~~l~  288 (292)
                      .....+.      .+  .......++.+.+++.+||+.||++|| +.+     .++.++.+.
T Consensus       247 ~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL  308 (676)
T 3qa8_A          247 YDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSIL  308 (676)
T ss_dssp             CCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHH
T ss_pred             hhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHH
Confidence            1111111      11  111245788999999999999999999 987     455565554

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.97  E-value=4.4e-32  Score=239.56  Aligned_cols=223  Identities=14%  Similarity=0.166  Sum_probs=166.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC--------CCCccceeeeee----cCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI--------HRCIFKLIGCCL----ETQ  105 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~--------h~niv~~~~~~~----~~~  105 (292)
                      +|+||.||+|....       +++.||+|.++.. ....+.+.+|+.+++.++        |+||+++++++.    ...
T Consensus        47 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~  118 (397)
T 1wak_A           47 WGHFSTVWLSWDIQ-------GKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGT  118 (397)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEE
T ss_pred             ecCCeeEEEEEecC-------CCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCc
Confidence            89999999998865       8999999999754 334567889999999995        788999999987    456


Q ss_pred             cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceEecCCC-----
Q 044211          106 IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR-PVIFRDFKLSNILFNEEN-----  179 (292)
Q Consensus       106 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~-~i~H~dlk~~nili~~~~-----  179 (292)
                      ..++||||+. ++|.+.+...     ....+++..+..++.|++.||.|||   .. +|+||||||+|||++.++     
T Consensus       119 ~~~lv~e~~~-~~l~~~~~~~-----~~~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDikp~NIll~~~~~~~~~  189 (397)
T 1wak_A          119 HICMVFEVLG-HHLLKWIIKS-----NYQGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIKPENILLSVNEQYIRR  189 (397)
T ss_dssp             EEEEEECCCC-CBHHHHHHHT-----TTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCSGGGEEECCCHHHHHH
T ss_pred             eEEEEEeccC-ccHHHHHHhc-----ccCCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHeeEeccchhhhh
Confidence            7899999995 5777766322     2356999999999999999999999   77 999999999999999775     


Q ss_pred             --------------------------------------------ceEEeecccccccCCCCccchhhhhccccccccccc
Q 044211          180 --------------------------------------------VAKLFDFSFSISIPEGETHISELLSGLRAFDLARLN  215 (292)
Q Consensus       180 --------------------------------------------~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~  215 (292)
                                                                  .+||+|||++......    .....||..|++||..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----~~~~~gt~~y~aPE~~  265 (397)
T 1wak_A          190 LAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----FTEDIQTRQYRSLEVL  265 (397)
T ss_dssp             HHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----SCSCCSCGGGCCHHHH
T ss_pred             hhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----CccCCCCCcccCChhh
Confidence                                                        7999999999876533    2334689999888754


Q ss_pred             CC------C-----CeE--EEc-cchhhhhhccc---------hhhhcc---c-----------------------cccc
Q 044211          216 ED------D-----GYV--VLL-DHIKKYFEEDR---------LNEIID---P-----------------------LIMG  246 (292)
Q Consensus       216 ~~------~-----Gvi--el~-~~~~~~~~~~~---------~~~~~~---~-----------------------~~~~  246 (292)
                      ..      +     |++  ||+ |+. |+.....         ...+..   .                       .+..
T Consensus       266 ~~~~~~~~~DiwslG~il~elltg~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  344 (397)
T 1wak_A          266 IGSGYNTPADIWSTACMAFELATGDY-LFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITK  344 (397)
T ss_dssp             HTSCCCTHHHHHHHHHHHHHHHHSSC-SCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCC
T ss_pred             cCCCCCcHHHHHHHHHHHHHHhhCCC-CCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccc
Confidence            32      2     888  888 643 2221100         000000   0                       0000


Q ss_pred             CCC----------CCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          247 DRS----------CSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       247 ~~~----------~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ..+          ...+...+..+.+|+.+||+.||++|| +.|+++
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          345 LKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             CCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             cCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence            000          011246778899999999999999999 999986

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.97  E-value=9.3e-32  Score=234.74  Aligned_cols=229  Identities=15%  Similarity=0.117  Sum_probs=161.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCc-------ceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQI-------PILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~-------~~lv  110 (292)
                      +|+||.||+|.+..       +++.||||.+.... .......+++..++.++||||+++++++...+.       .++|
T Consensus        33 ~G~~g~V~~~~~~~-------~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv  104 (360)
T 3e3p_A           33 QGTFGTVQLGKEKS-------TGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVV  104 (360)
T ss_dssp             ------CEEEEETT-------TCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEE
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEE
Confidence            89999999999865       89999999986542 223456788888999999999999999976433       7899


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-CCceEEeecccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-ENVAKLFDFSFS  189 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-~~~~kl~Dfg~a  189 (292)
                      |||+.+ +|...+....   .....+++..+..++.|++.||.|||.. ..+++|+||||+|||++. ++.+||+|||++
T Consensus       105 ~e~~~~-~l~~~~~~~~---~~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a  179 (360)
T 3e3p_A          105 MEYVPD-TLHRCCRNYY---RRQVAPPPILIKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLVNEADGTLKLCDFGSA  179 (360)
T ss_dssp             EECCSC-BHHHHHHHHH---TTTCCCCHHHHHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEEETTTTEEEECCCTTC
T ss_pred             eecccc-cHHHHHHHHh---hcccCCCHHHHHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEEeCCCCcEEEeeCCCc
Confidence            999995 6665553221   2456789999999999999999999943 578999999999999996 899999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhcccccc---------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIM---------  245 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~---------  245 (292)
                      ........  .....||..|++|+....       +     |++  +|+ |+. |+...... ..+.....         
T Consensus       180 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~-pf~~~~~~-~~~~~~~~~~~~~~~~~  255 (360)
T 3e3p_A          180 KKLSPSEP--NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEP-IFRGDNSA-GQLHEIVRVLGCPSREV  255 (360)
T ss_dssp             BCCCTTSC--CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC-SSCCSSHH-HHHHHHHHHHCCCCHHH
T ss_pred             eecCCCCC--cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCC-CcCCCChH-HHHHHHHHHcCCCCHHH
Confidence            87754332  234568899988885421       1     888  888 653 33222111 00000000         


Q ss_pred             --------------cCCCC-------CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          246 --------------GDRSC-------SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       246 --------------~~~~~-------~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                    .....       ......++.+.+|+.+||+.||.+|| +.|+++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  315 (360)
T 3e3p_A          256 LRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH  315 (360)
T ss_dssp             HHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             HHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence                          00000       00012567899999999999999999 9999864

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.97  E-value=4.6e-32  Score=239.69  Aligned_cols=224  Identities=17%  Similarity=0.158  Sum_probs=162.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCc------ceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQI------PILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~------~~lv~  111 (292)
                      +|+||.||+|.+.        .+..||+|.+......    ..+|+.+++.++||||+++++++.....      .++||
T Consensus        50 ~G~~g~V~~a~~~--------~~~~~aikk~~~~~~~----~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~  117 (394)
T 4e7w_A           50 NGSFGVVFQAKLV--------ESDEVAIKKVLQDKRF----KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVL  117 (394)
T ss_dssp             EETTEEEEEEEET--------TTEEEEEEEEECCTTS----CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEE
T ss_pred             eCCCeEEEEEEEC--------CCCeEEEEEEecCcch----HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEe
Confidence            8999999999987        5666999987654221    2269999999999999999999965433      78999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec-CCCceEEeeccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN-EENVAKLFDFSFSI  190 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~-~~~~~kl~Dfg~a~  190 (292)
                      ||+.+ ++...+....   .....+++..+..++.|++.||.|||   ..+|+||||||+|||++ .++.+||+|||+++
T Consensus       118 e~~~~-~l~~~~~~~~---~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~  190 (394)
T 4e7w_A          118 EYVPE-TVYRASRHYA---KLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAK  190 (394)
T ss_dssp             ECCSE-EHHHHHHHHH---HTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             eccCc-cHHHHHHHHH---hhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence            99996 5554442211   13567999999999999999999999   89999999999999999 78999999999998


Q ss_pred             ccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhh---cc-----------
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEI---ID-----------  241 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~---~~-----------  241 (292)
                      .......  .....||+.|++||....       +     |++  ||+ |+. |+.........   +.           
T Consensus       191 ~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~-pf~~~~~~~~l~~i~~~~g~p~~~~~~  267 (394)
T 4e7w_A          191 ILIAGEP--NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQP-LFPGESGIDQLVEIIKVLGTPSREQIK  267 (394)
T ss_dssp             ECCTTCC--CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC-SSCCSSHHHHHHHHHHHHCCCCHHHHH
T ss_pred             cccCCCC--CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            7754332  234567889988885422       1     888  888 643 33222111100   00           


Q ss_pred             ---ccc-ccCCC---CCC-----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 ---PLI-MGDRS---CSG-----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 ---~~~-~~~~~---~~~-----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                         +.. ....+   ...     +...++.+.+|+.+||+.||.+|| +.|+++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  322 (394)
T 4e7w_A          268 TMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH  322 (394)
T ss_dssp             HHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             hhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence               000 00000   000     013566899999999999999999 9999864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.97  E-value=1.2e-31  Score=252.44  Aligned_cols=217  Identities=18%  Similarity=0.266  Sum_probs=166.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCc-----ceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQI-----PILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~-----~~lv~  111 (292)
                      +|+||.||+|.+..      .+++.||||.+... .......+.+|+.++++++||||+++++++...+.     .++||
T Consensus        90 ~G~~g~Vy~a~~~~------~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~  163 (681)
T 2pzi_A           90 HGGLGWIYLALDRN------VNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVM  163 (681)
T ss_dssp             EETTEEEEEEEEGG------GTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEE
T ss_pred             eCCCeEEEEEEEcC------CCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEE
Confidence            89999999998741      05789999998654 33444678999999999999999999999987665     69999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+++++|.+++         ...+++..++.++.|++.||.|||   +.+|+||||||+|||++.+ .+||+|||++..
T Consensus       164 E~~~g~~L~~~~---------~~~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~  230 (681)
T 2pzi_A          164 EYVGGQSLKRSK---------GQKLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSR  230 (681)
T ss_dssp             ECCCCEECC-------------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred             EeCCCCcHHHHH---------hCCCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccchh
Confidence            999999999887         126999999999999999999999   8999999999999999986 899999999987


Q ss_pred             cCCCCccchhhhhcccccccccccCC-----C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          192 IPEGETHISELLSGLRAFDLARLNED-----D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~~-----~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ....     ....||+.|++||....     +     |++  +|+ |.. ++... ..    + .+   +........++
T Consensus       231 ~~~~-----~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~-~~~~~-~~----~-~~---~~~~~~~~~~~  295 (681)
T 2pzi_A          231 INSF-----GYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLP-TRNGR-YV----D-GL---PEDDPVLKTYD  295 (681)
T ss_dssp             TTCC-----SCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCC-EETTE-EC----S-SC---CTTCHHHHHCH
T ss_pred             cccC-----CccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCC-CCccc-cc----c-cc---cccccccccCH
Confidence            6543     33568999988886432     2     888  777 532 22211 10    0 01   11111124567


Q ss_pred             HHHHHHhHhcCCCCCCCC--HHHHHHHHHHhh
Q 044211          259 AFAHLIFECVNESPVDRP--MVDVAKKTQANV  288 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP--~~el~~~L~~l~  288 (292)
                      .+.+|+.+||+.||++||  +.++.+.|..+.
T Consensus       296 ~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  327 (681)
T 2pzi_A          296 SYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL  327 (681)
T ss_dssp             HHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence            899999999999999999  566777776543

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.97  E-value=9.2e-32  Score=231.56  Aligned_cols=226  Identities=15%  Similarity=0.170  Sum_probs=164.9

Q ss_pred             ccCCCeeEeeecC-CCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhc---CCCCccceeeeee-----cCCc
Q 044211           38 IKNGYKLYEGFFQ-NRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQM---IHRCIFKLIGCCL-----ETQI  106 (292)
Q Consensus        38 ~G~~g~V~~~~~~-~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l---~h~niv~~~~~~~-----~~~~  106 (292)
                      +|+||.||+|.+. .       +++.||+|.++...  ......+.+|+.+++.+   +||||+++++++.     ....
T Consensus        21 ~G~~g~V~~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   93 (326)
T 1blx_A           21 EGAYGKVFKARDLKN-------GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETK   93 (326)
T ss_dssp             EETTEEEEEEEETTT-------TTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEE
T ss_pred             ccccEEEEEEEecCC-------CCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCce
Confidence            8999999999873 3       78899999986421  22223466777777766   8999999999987     4566


Q ss_pred             ceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          107 PILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       107 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      .++|+||+. |+|.+++...     ....+++..+..++.|++.||.|||   ..+++|+||||+||+++.++.+||+||
T Consensus        94 ~~lv~e~~~-~~L~~~l~~~-----~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~Df  164 (326)
T 1blx_A           94 LTLVFEHVD-QDLTTYLDKV-----PEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADF  164 (326)
T ss_dssp             EEEEEECCS-CBHHHHHHHS-----CTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSC
T ss_pred             EEEEEecCC-CCHHHHHHhc-----ccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEecC
Confidence            899999999 6999999533     2345899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchh---hhccc-------
Q 044211          187 SFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLN---EIIDP-------  242 (292)
Q Consensus       187 g~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~---~~~~~-------  242 (292)
                      |++.......  ......|+..|++|+.....           |++  +|+ |+. |+.......   .++..       
T Consensus       165 g~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~-pf~~~~~~~~~~~i~~~~~~~~~~  241 (326)
T 1blx_A          165 GLARIYSFQM--ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKP-LFRGSSDVDQLGKILDVIGLPGEE  241 (326)
T ss_dssp             CSCCCCCGGG--GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHCCCCGG
T ss_pred             cccccccCCC--CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHcCCCCcc
Confidence            9997664321  23345688899888765432           888  888 543 332211110   00000       


Q ss_pred             -----------ccccCCCC---CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 -----------LIMGDRSC---SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 -----------~~~~~~~~---~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                                 ........   ......+..+.+|+.+||+.||++|| +.++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          242 DWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             GSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                       00000000   00124567899999999999999999 999985

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.97  E-value=2.1e-31  Score=233.54  Aligned_cols=222  Identities=14%  Similarity=0.157  Sum_probs=167.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-----------CCCccceeeeeecCC-
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-----------HRCIFKLIGCCLETQ-  105 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~~~~~~~~~~-  105 (292)
                      +|+||.||+|....       +++.||+|.+... ......+.+|+.++++++           |+||+++++++...+ 
T Consensus        29 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~  100 (373)
T 1q8y_A           29 WGHFSTVWLAKDMV-------NNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGP  100 (373)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEET
T ss_pred             ecCCeEEEEEEecC-------CCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCC
Confidence            89999999999865       8999999999754 234466889999999886           899999999998644 


Q ss_pred             ---cceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CcccCCCCCCceEec-----
Q 044211          106 ---IPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR-PVIFRDFKLSNILFN-----  176 (292)
Q Consensus       106 ---~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~-~i~H~dlk~~nili~-----  176 (292)
                         ..++|+||+ +++|.+++...     ....+++..+..++.|++.||.|||   .. +|+|+||||+|||++     
T Consensus       101 ~~~~~~lv~e~~-~~~L~~~~~~~-----~~~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~~~~  171 (373)
T 1q8y_A          101 NGVHVVMVFEVL-GENLLALIKKY-----EHRGIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIVDSP  171 (373)
T ss_dssp             TEEEEEEEECCC-CEEHHHHHHHT-----TTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEEETT
T ss_pred             CCceEEEEEecC-CCCHHHHHHHh-----hccCCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChHHeEEeccCCC
Confidence               688999999 78999999533     2345899999999999999999999   77 999999999999995     


Q ss_pred             -CCCceEEeecccccccCCCCccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhcc-------
Q 044211          177 -EENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEED-------  234 (292)
Q Consensus       177 -~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~-------  234 (292)
                       ..+.+||+|||++.......    ....||+.|++||....      +     |++  ||+ |.. |+....       
T Consensus       172 ~~~~~~kl~Dfg~a~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~-pf~~~~~~~~~~~  246 (373)
T 1q8y_A          172 ENLIQIKIADLGNACWYDEHY----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDF-LFEPDEGHSYTKD  246 (373)
T ss_dssp             TTEEEEEECCCTTCEETTBCC----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSC-CC---------CH
T ss_pred             cCcceEEEcccccccccCCCC----CCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCC-CCCCCcccccCCh
Confidence             34479999999998764322    23468899988875432      2     888  888 643 322111       


Q ss_pred             --chhhhcc--------------------------------------cccccCCCCCCchHHHHHHHHHHhHhcCCCCCC
Q 044211          235 --RLNEIID--------------------------------------PLIMGDRSCSGNQQQLQAFAHLIFECVNESPVD  274 (292)
Q Consensus       235 --~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~  274 (292)
                        ....++.                                      ..+.....  .+...+..+.+|+.+||+.||++
T Consensus       247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~  324 (373)
T 1q8y_A          247 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYK--FSKDEAKEISDFLSPMLQLDPRK  324 (373)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTC--CCHHHHHHHHHHHGGGGCSSTTT
T ss_pred             HHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhccc--CCcchHHHHHHHHHHHhccCccc
Confidence              0000000                                      00000111  12477889999999999999999


Q ss_pred             CC-HHHHHHH
Q 044211          275 RP-MVDVAKK  283 (292)
Q Consensus       275 RP-~~el~~~  283 (292)
                      || +.|+++.
T Consensus       325 Rpt~~ell~h  334 (373)
T 1q8y_A          325 RADAGGLVNH  334 (373)
T ss_dssp             CBCHHHHHTC
T ss_pred             cCCHHHHhhC
Confidence            99 9999863

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.97  E-value=8.1e-31  Score=228.01  Aligned_cols=223  Identities=12%  Similarity=0.141  Sum_probs=166.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCC-eEEEEEeecCCCcchHHHHHHHHHHHHhcCCCC------ccceeeeeecCCcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQE-RPVSVMKFDESKPRTYDCCINNIVYASQMIHRC------IFKLIGCCLETQIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~-~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~~~~~~~~~~~~~lv  110 (292)
                      +|+||.||+|....       ++ +.||+|.++.. ......+.+|+.+++.++|++      ++.+++++...+..++|
T Consensus        29 ~G~~g~V~~~~~~~-------~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv  100 (355)
T 2eu9_A           29 EGTFGKVVECLDHA-------RGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIA  100 (355)
T ss_dssp             EETTEEEEEEEETT-------TTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEEE
T ss_pred             ccCCeEEEEEEecC-------CCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEEE
Confidence            89999999999753       44 78999999754 234567889999999997765      89999999999999999


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEe---------------
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF---------------  175 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili---------------  175 (292)
                      |||+. ++|.+++...     ....+++..+..++.|++.||.|||   +.+|+|+||||+|||+               
T Consensus       101 ~e~~~-~~l~~~l~~~-----~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~  171 (355)
T 2eu9_A          101 FELLG-KNTFEFLKEN-----NFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSC  171 (355)
T ss_dssp             EECCC-CBHHHHHHHT-----TTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CC
T ss_pred             EeccC-CChHHHHHhc-----cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecccccccccccccc
Confidence            99995 6777777422     2356899999999999999999999   8999999999999999               


Q ss_pred             ----cCCCceEEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchh
Q 044211          176 ----NEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLN  237 (292)
Q Consensus       176 ----~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~  237 (292)
                          +.++.+||+|||++.......    ....||..|++||.....           |++  ||+ |+. |+.......
T Consensus       172 ~~~~~~~~~~kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~-pf~~~~~~~  246 (355)
T 2eu9_A          172 EEKSVKNTSIRVADFGSATFDHEHH----TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFT-LFQTHENRE  246 (355)
T ss_dssp             CEEEESCCCEEECCCTTCEETTSCC----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHH
T ss_pred             cccccCCCcEEEeecCccccccccc----cCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCC-CCCCCCHHH
Confidence                567899999999998654322    335689999888765432           888  888 644 322211100


Q ss_pred             --hhccccccc---------------------------------------CCCCCCchHHHHHHHHHHhHhcCCCCCCCC
Q 044211          238 --EIIDPLIMG---------------------------------------DRSCSGNQQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       238 --~~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                        ..+......                                       ..........+..+.+|+.+||+.||++||
T Consensus       247 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp  326 (355)
T 2eu9_A          247 HLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRI  326 (355)
T ss_dssp             HHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred             HHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCc
Confidence              000000000                                       000011125567899999999999999999


Q ss_pred             -HHHHHH
Q 044211          277 -MVDVAK  282 (292)
Q Consensus       277 -~~el~~  282 (292)
                       +.|+++
T Consensus       327 t~~e~l~  333 (355)
T 2eu9_A          327 TLAEALL  333 (355)
T ss_dssp             CHHHHTT
T ss_pred             CHHHHhc
Confidence             999975

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.97  E-value=2.4e-30  Score=227.74  Aligned_cols=171  Identities=17%  Similarity=0.150  Sum_probs=139.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CC-----CccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HR-----CIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~-----niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||+|....       +++.||||.++.. ......+..|+.+++.++ |+     +|+++++++...+..++||
T Consensus        64 ~G~~g~V~~~~~~~-------~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~  135 (382)
T 2vx3_A           64 KGSFGQVVKAYDRV-------EQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVF  135 (382)
T ss_dssp             EETTEEEEEEEETT-------TTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEEE
T ss_pred             ecCCEEEEEEEEcC-------CCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEEE
Confidence            99999999999865       8899999999754 234466788999988885 55     4999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec--CCCceEEeecccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN--EENVAKLFDFSFS  189 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~--~~~~~kl~Dfg~a  189 (292)
                      ||+. |+|.+++...     ....+++..+..++.|++.||.|||.. ..+|+||||||+|||++  .++.+||+|||++
T Consensus       136 e~~~-~~L~~~l~~~-----~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a  208 (382)
T 2vx3_A          136 EMLS-YNLYDLLRNT-----NFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSS  208 (382)
T ss_dssp             ECCC-CBHHHHHHHT-----TTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred             ecCC-CCHHHHHhhc-----CcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCc
Confidence            9997 5999999533     224589999999999999999999932 36899999999999995  4778999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cch
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHI  227 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~  227 (292)
                      .......    ....||+.|++||+....           |++  ||+ |+.
T Consensus       209 ~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~  256 (382)
T 2vx3_A          209 CQLGQRI----YQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEP  256 (382)
T ss_dssp             EETTCCC----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             eeccccc----ccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence            8774322    235688899888765432           888  888 653

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.97  E-value=6.8e-31  Score=227.34  Aligned_cols=215  Identities=12%  Similarity=0.126  Sum_probs=154.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--------cchHHHHHHHHHHHHhcC---------CCCccceeee
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--------PRTYDCCINNIVYASQMI---------HRCIFKLIGC  100 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--------~~~~~~~~~e~~~l~~l~---------h~niv~~~~~  100 (292)
                      +|+||.||+|.+         +++.||||.+....        ....+.+.+|+.+++.++         ||||+++.++
T Consensus        30 ~G~~g~V~~~~~---------~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~  100 (336)
T 2vuw_A           30 EGVFGEVFQTIA---------DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSV  100 (336)
T ss_dssp             EETTEEEEEEEE---------TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEE
T ss_pred             ccCceEEEEEEe---------CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcce
Confidence            999999999998         78999999987542        223477889999999886         6666555554


Q ss_pred             -----------------eec-------------CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHH
Q 044211          101 -----------------CLE-------------TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN  150 (292)
Q Consensus       101 -----------------~~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~  150 (292)
                                       +..             .+..++||||+++|++.+.+.        ...+++..+..++.|++.
T Consensus       101 ~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~--------~~~~~~~~~~~i~~qi~~  172 (336)
T 2vuw_A          101 HCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMR--------TKLSSLATAKSILHQLTA  172 (336)
T ss_dssp             EEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGT--------TTCCCHHHHHHHHHHHHH
T ss_pred             eEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHH--------hcCCCHHHHHHHHHHHHH
Confidence                             333             678999999999997776661        256899999999999999


Q ss_pred             HHHHhhcCCCCCcccCCCCCCceEecCCC--------------------ceEEeecccccccCCCCccchhhhhcccccc
Q 044211          151 AIAYLHVGFPRPVIFRDFKLSNILFNEEN--------------------VAKLFDFSFSISIPEGETHISELLSGLRAFD  210 (292)
Q Consensus       151 ~l~~lh~~~~~~i~H~dlk~~nili~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~  210 (292)
                      ||.|||+  +.+|+||||||+|||++.++                    .+||+|||+|+.....      ...||+.|+
T Consensus       173 aL~~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------~~~gt~~y~  244 (336)
T 2vuw_A          173 SLAVAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG------IVVFCDVSM  244 (336)
T ss_dssp             HHHHHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT------EEECCCCTT
T ss_pred             HHHHHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC------cEEEeeccc
Confidence            9999993  36899999999999999887                    8999999999877532      347899999


Q ss_pred             cccccCCC-----------CeE--EEccchhhhhhccc----hhhhcccc-cccCCCCCCchHHHHHHHHHHhHhcCCCC
Q 044211          211 LARLNEDD-----------GYV--VLLDHIKKYFEEDR----LNEIIDPL-IMGDRSCSGNQQQLQAFAHLIFECVNESP  272 (292)
Q Consensus       211 ~~~~~~~~-----------Gvi--el~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~Cl~~dP  272 (292)
                      +||.....           |..  +++....|+.....    ...+.... .........+...++.+.+|+.+||+.| 
T Consensus       245 aPE~~~g~~~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d-  323 (336)
T 2vuw_A          245 DEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS-  323 (336)
T ss_dssp             CSGGGCCCSSHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS-
T ss_pred             ChhhhcCCCccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC-
Confidence            99876543           221  44422233322111    11111111 1111111112467899999999999965 


Q ss_pred             CCCCHHHHH
Q 044211          273 VDRPMVDVA  281 (292)
Q Consensus       273 ~~RP~~el~  281 (292)
                         .+.|++
T Consensus       324 ---sa~e~l  329 (336)
T 2vuw_A          324 ---SATDLL  329 (336)
T ss_dssp             ---SHHHHH
T ss_pred             ---CHHHHH
Confidence               467766

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.96  E-value=5.2e-31  Score=234.28  Aligned_cols=222  Identities=11%  Similarity=0.093  Sum_probs=158.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHHHHHhcCC-CCcccee---------------
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIVYASQMIH-RCIFKLI---------------   98 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h-~niv~~~---------------   98 (292)
                      +|+||.||+|.+..       +++.||||+++....   ...+.+.+|+.+++.++| +|...+.               
T Consensus        88 ~G~fG~Vy~a~~~~-------~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  160 (413)
T 3dzo_A           88 QEDPYAYLEATDQE-------TGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDP  160 (413)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECC
T ss_pred             cCCCEEEEEEEecC-------CCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccC
Confidence            89999999999865       899999999874322   235678999999999977 3321111               


Q ss_pred             ------eeeec-----CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC
Q 044211           99 ------GCCLE-----TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRD  167 (292)
Q Consensus        99 ------~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~d  167 (292)
                            .++..     ....+++|+++. ++|.++++...........+++..++.++.|++.||.|||   ..+|+|||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~iiHrD  236 (413)
T 3dzo_A          161 QKKKMIRVRLDERDMWVLSRFFLYPRMQ-SNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTY  236 (413)
T ss_dssp             C---------------CCSEEEEEECCS-EEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEECSC
T ss_pred             CCCccccccCCCccccccceEEEeehhc-CCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCC
Confidence                  11111     123466777665 7999999543221234566888899999999999999999   89999999


Q ss_pred             CCCCceEecCCCceEEeecccccccCCCCccchhhhhccccccccccc----------C------CC-----CeE--EEc
Q 044211          168 FKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLN----------E------DD-----GYV--VLL  224 (292)
Q Consensus       168 lk~~nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~----------~------~~-----Gvi--el~  224 (292)
                      |||+|||++.++.+||+|||+++.....    .....| +.|++||..          .      ++     |++  ||+
T Consensus       237 iKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ell  311 (413)
T 3dzo_A          237 LRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIW  311 (413)
T ss_dssp             CCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHH
T ss_pred             cccceEEEecCCeEEEEeccceeecCCc----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHH
Confidence            9999999999999999999998765432    234566 889888866          2      22     888  888


Q ss_pred             -cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          225 -DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                       |+. |+... .........+....      ..++.+.+|+.+||+.||++|| +.++++.
T Consensus       312 tg~~-Pf~~~-~~~~~~~~~~~~~~------~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~  364 (413)
T 3dzo_A          312 CADL-PNTDD-AALGGSEWIFRSCK------NIPQPVRALLEGFLRYPKEDRLLPLQAMET  364 (413)
T ss_dssp             HSSC-CCCTT-GGGSCSGGGGSSCC------CCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             HCCC-CCCCc-chhhhHHHHHhhcc------cCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence             544 43322 22223333333222      3345899999999999999999 9888653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.94  E-value=7.6e-28  Score=221.40  Aligned_cols=158  Identities=17%  Similarity=0.095  Sum_probs=122.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC----------cchHHHHHHHHHHHHhc-CCCCccceeeeeecCCc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK----------PRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQI  106 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~----------~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~  106 (292)
                      .|++|.+..+..       .+.|+.|++|.+....          ....++|.+|+.+|+++ .|+||+++++++.+++.
T Consensus       244 ~~~~~~h~~~rr-------~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~  316 (569)
T 4azs_A          244 AGAGLAHKRSRR-------YFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQS  316 (569)
T ss_dssp             --------CCEE-------EEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSE
T ss_pred             cCCccccccccc-------ccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCE
Confidence            455555554433       2378899999986431          12235699999999999 69999999999999999


Q ss_pred             ceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          107 PILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       107 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      .||||||++|++|.++++       ...++++.   .|+.||+.||.|+|   +.+|+||||||+|||++++|.+||+||
T Consensus       317 ~yLVMEyv~G~~L~d~i~-------~~~~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DF  383 (569)
T 4azs_A          317 GWLVMEKLPGRLLSDMLA-------AGEEIDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDF  383 (569)
T ss_dssp             EEEEEECCCSEEHHHHHH-------TTCCCCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCC
T ss_pred             EEEEEecCCCCcHHHHHH-------hCCCCCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeec
Confidence            999999999999999994       34456654   47899999999999   999999999999999999999999999


Q ss_pred             ccccccCCCCccchhhhhcccccccccccC
Q 044211          187 SFSISIPEGETHISELLSGLRAFDLARLNE  216 (292)
Q Consensus       187 g~a~~~~~~~~~~~~~~~g~~~y~~~~~~~  216 (292)
                      |+|+....+.. ......||+.|++||...
T Consensus       384 GlAr~~~~~~~-~~~t~vGTp~YmAPE~l~  412 (569)
T 4azs_A          384 GSIVTTPQDCS-WPTNLVQSFFVFVNELFA  412 (569)
T ss_dssp             TTEESCC---C-CSHHHHHHHHHHHHHHC-
T ss_pred             ccCeeCCCCCc-cccCceechhhccHHHhC
Confidence            99987765433 345578999998877654

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.91  E-value=1.6e-24  Score=198.28  Aligned_cols=149  Identities=15%  Similarity=0.129  Sum_probs=121.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--c------hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--R------TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--~------~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~l  109 (292)
                      +|+||.||+|.+         .++.+++|.......  .      ..+++.+|+.++++++||||+++..++...+..++
T Consensus       346 ~G~fg~Vy~~~~---------~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~l  416 (540)
T 3en9_A          346 KGAEADIKRDSY---------LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRI  416 (540)
T ss_dssp             --CCEEEEEEEC---------SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEE
T ss_pred             eCCCEEEEEEEE---------CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEE
Confidence            899999999976         788999998644211  1      12458999999999999999966666667778899


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ||||+++++|.+++.       .        +..++.|++.||.|||   +.+|+||||||+|||++.  .+||+|||++
T Consensus       417 VmE~~~ggsL~~~l~-------~--------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla  476 (540)
T 3en9_A          417 MMSYINGKLAKDVIE-------D--------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLG  476 (540)
T ss_dssp             EEECCCSEEHHHHST-------T--------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTC
T ss_pred             EEECCCCCCHHHHHH-------H--------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccC
Confidence            999999999999992       1        5689999999999999   899999999999999999  9999999999


Q ss_pred             cccCCCCccc------hhhhhccccccccccc
Q 044211          190 ISIPEGETHI------SELLSGLRAFDLARLN  215 (292)
Q Consensus       190 ~~~~~~~~~~------~~~~~g~~~y~~~~~~  215 (292)
                      +.........      .....||+.|++||+.
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~  508 (540)
T 3en9_A          477 KISNLDEDKAVDLIVFKKAVLSTHHEKFDEIW  508 (540)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             EECCCccccccchhhhhhhhcCCCCcCCHHHH
Confidence            9875533221      2467789999888744

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.87  E-value=4.5e-22  Score=167.63  Aligned_cols=126  Identities=13%  Similarity=0.130  Sum_probs=104.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc------------------chHHHHHHHHHHHHhcCCCCccceee
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP------------------RTYDCCINNIVYASQMIHRCIFKLIG   99 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~------------------~~~~~~~~e~~~l~~l~h~niv~~~~   99 (292)
                      +|+||.||+|.+.        +++.||+|.++....                  .....+.+|+.++++++  | +++.+
T Consensus       100 ~G~~g~Vy~~~~~--------~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~  168 (282)
T 1zar_A          100 EGKESAVFNCYSE--------KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPK  168 (282)
T ss_dssp             ECSSEEEEEEEET--------TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCC
T ss_pred             cCCCceEEEEEeC--------CCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCe
Confidence            8999999999994        899999999864321                  12356889999999999  5 67777


Q ss_pred             eeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC
Q 044211          100 CCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN  179 (292)
Q Consensus       100 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~  179 (292)
                      ++.. +..++||||+++|+|.+ +.           .  .....++.|++.||.|||   ..+++||||||+|||++ ++
T Consensus       169 ~~~~-~~~~lvmE~~~g~~L~~-l~-----------~--~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~-~~  229 (282)
T 1zar_A          169 VYAW-EGNAVLMELIDAKELYR-VR-----------V--ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS-EE  229 (282)
T ss_dssp             EEEE-ETTEEEEECCCCEEGGG-CC-----------C--SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE-TT
T ss_pred             EEec-cceEEEEEecCCCcHHH-cc-----------h--hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE-CC
Confidence            5543 56799999999999988 51           1  124479999999999999   89999999999999999 99


Q ss_pred             ceEEeecccccccC
Q 044211          180 VAKLFDFSFSISIP  193 (292)
Q Consensus       180 ~~kl~Dfg~a~~~~  193 (292)
                      .+||+|||+|....
T Consensus       230 ~vkl~DFG~a~~~~  243 (282)
T 1zar_A          230 GIWIIDFPQSVEVG  243 (282)
T ss_dssp             EEEECCCTTCEETT
T ss_pred             cEEEEECCCCeECC
Confidence            99999999997654

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.80  E-value=1.1e-19  Score=151.14  Aligned_cols=132  Identities=11%  Similarity=0.114  Sum_probs=100.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeE--EEEEeecCCCcch------------------------HHHHHHHHHHHHhcCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERP--VSVMKFDESKPRT------------------------YDCCINNIVYASQMIH   91 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~--vaiK~~~~~~~~~------------------------~~~~~~e~~~l~~l~h   91 (292)
                      +|+||.||+|.+..       +|+.  ||||.++......                        ...+.+|+..+.++.|
T Consensus        57 ~G~~g~Vy~a~~~~-------~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~  129 (258)
T 1zth_A           57 TGKEANVFYADGVF-------DGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKE  129 (258)
T ss_dssp             ECSSEEEEEEEEEE-------TTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecceEEEEEEEEcC-------CCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999833       8888  9999875431110                        1257899999999988


Q ss_pred             CCc--cceeeeeecCCcceEEEeccCC-C----ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 044211           92 RCI--FKLIGCCLETQIPILVFEYINC-G----SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVI  164 (292)
Q Consensus        92 ~ni--v~~~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~  164 (292)
                      +++  ..++++    +..++||||+.+ |    +|.++..          ..++..+..++.|++.||.|||.  ..+++
T Consensus       130 ~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~----------~~~~~~~~~i~~qi~~~l~~lH~--~~giv  193 (258)
T 1zth_A          130 AGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGR----------ELKELDVEGIFNDVVENVKRLYQ--EAELV  193 (258)
T ss_dssp             TTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGG----------GGGGSCHHHHHHHHHHHHHHHHH--TSCEE
T ss_pred             CCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhh----------ccChHHHHHHHHHHHHHHHHHHH--HCCEE
Confidence            864  344432    367899999942 4    6666551          12345678899999999999994  46899


Q ss_pred             cCCCCCCceEecCCCceEEeecccccccCC
Q 044211          165 FRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       165 H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ||||||+|||++.  .++|+|||+|.....
T Consensus       194 HrDlkp~NILl~~--~~~liDFG~a~~~~~  221 (258)
T 1zth_A          194 HADLSEYNIMYID--KVYFIDMGQAVTLRH  221 (258)
T ss_dssp             CSSCSTTSEEESS--SEEECCCTTCEETTS
T ss_pred             eCCCCHHHEEEcC--cEEEEECcccccCCC
Confidence            9999999999998  999999999986643

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.66  E-value=4.3e-17  Score=141.45  Aligned_cols=128  Identities=13%  Similarity=0.164  Sum_probs=92.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc--------------chHHH--------HHHHHHHHHhcCCCCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP--------------RTYDC--------CINNIVYASQMIHRCIF   95 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~--------------~~~~~--------~~~e~~~l~~l~h~niv   95 (292)
                      +|+||.||+|...        +|+.||||+++....              .....        ...|...|.++.+.++.
T Consensus       105 ~Gk~a~VY~a~d~--------~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~  176 (397)
T 4gyi_A          105 VGKESDIMIVADE--------KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP  176 (397)
T ss_dssp             ECSSEEEEEEECT--------TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             eCCceEEEEEECC--------CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999986        899999998753210              00011        12456666666544432


Q ss_pred             --ceeeeeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCce
Q 044211           96 --KLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNI  173 (292)
Q Consensus        96 --~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~ni  173 (292)
                        ..+++    ...++||||+++++|.++..           .  .....++.|++.+|.+||   ..+|+||||||.||
T Consensus       177 vp~p~~~----~~~~LVME~i~G~~L~~l~~-----------~--~~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NI  236 (397)
T 4gyi_A          177 VPEPIAQ----SRHTIVMSLVDALPMRQVSS-----------V--PDPASLYADLIALILRLA---KHGLIHGDFNEFNI  236 (397)
T ss_dssp             CCCEEEE----ETTEEEEECCSCEEGGGCCC-----------C--SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSE
T ss_pred             CCeeeec----cCceEEEEecCCccHhhhcc-----------c--HHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHE
Confidence              22221    23479999999988866551           1  123567899999999999   89999999999999


Q ss_pred             EecCCC----------ceEEeecccccccC
Q 044211          174 LFNEEN----------VAKLFDFSFSISIP  193 (292)
Q Consensus       174 li~~~~----------~~kl~Dfg~a~~~~  193 (292)
                      |+++++          .+.|.||+-+....
T Consensus       237 Ll~~dgd~~d~~~~~~~~~iID~~Q~V~~~  266 (397)
T 4gyi_A          237 LIREEKDAEDPSSITLTPIIIXFPQMVSMD  266 (397)
T ss_dssp             EEEEEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred             EEeCCCCcccccccccceEEEEeCCcccCC
Confidence            999876          38999999887654

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.40  E-value=6.7e-13  Score=110.18  Aligned_cols=132  Identities=14%  Similarity=-0.042  Sum_probs=101.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|+++.||+...         .++.+++|............+.+|+.+++.+. +.++.++++++...+..|+||||++|
T Consensus        24 g~s~~~v~~~~~---------~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G   94 (263)
T 3tm0_A           24 GMSPAKVYKLVG---------ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADG   94 (263)
T ss_dssp             CCSSSEEEEEEC---------SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSS
T ss_pred             CCCCCeEEEEEC---------CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCC
Confidence            456688999886         67899999986521122345889999999984 67788999999888889999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC--------------------------------------
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVG--------------------------------------  158 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~--------------------------------------  158 (292)
                      .+|.+.+.            +......++.+++.+|..||.-                                      
T Consensus        95 ~~l~~~~~------------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (263)
T 3tm0_A           95 VLCSEEYE------------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT  162 (263)
T ss_dssp             EEHHHHCC------------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTC
T ss_pred             eehhhccC------------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccc
Confidence            99877650            1122346788899999999951                                      


Q ss_pred             ------------------CCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          159 ------------------FPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       159 ------------------~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                                        ....++|+|++|.||+++.+....|.||+.+.
T Consensus       163 ~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          163 PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             SSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             cCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                              01448999999999999876566799998875

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.28  E-value=2.5e-11  Score=100.31  Aligned_cols=129  Identities=13%  Similarity=-0.020  Sum_probs=94.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCC--ccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRC--IFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|..+.||+....        +|..+++|......   ...+..|..+++.+.+.+  +.+++++....+..++||||++
T Consensus        30 gg~~~~v~~~~~~--------~g~~~vlK~~~~~~---~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~   98 (264)
T 1nd4_A           30 GCSDAAVFRLSAQ--------GRPVLFVKTDLSGA---LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVP   98 (264)
T ss_dssp             TTSSCEEEEEECT--------TSCCEEEEEECSCT---TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCS
T ss_pred             CCCCceEEEEecC--------CCCeEEEEeCCccc---chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecC
Confidence            3445899999875        77889999976542   244778999999986444  4568888877778899999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC------------------------------------
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF------------------------------------  159 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~------------------------------------  159 (292)
                      |.+|.  ..          ..+   ...++.+++..|..||...                                    
T Consensus        99 G~~l~--~~----------~~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (264)
T 1nd4_A           99 GQDLL--SS----------HLA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ  163 (264)
T ss_dssp             SEETT--TS----------CCC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGT
T ss_pred             CcccC--cC----------cCC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhcc
Confidence            98874  30          011   1245667777777777321                                    


Q ss_pred             -------------------CCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          160 -------------------PRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       160 -------------------~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                                         ...++|+|++|.||+++.++.+.|.||+.+...
T Consensus       164 ~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g  215 (264)
T 1nd4_A          164 GLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVA  215 (264)
T ss_dssp             TCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             CccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcccC
Confidence                               112899999999999987766779999997543

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.18  E-value=1.6e-10  Score=100.30  Aligned_cols=136  Identities=13%  Similarity=0.170  Sum_probs=100.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeec--CCC-cchHHHHHHHHHHHHhcC--CCCccceeeeeecC---CcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFD--ESK-PRTYDCCINNIVYASQMI--HRCIFKLIGCCLET---QIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~--~~~-~~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~---~~~~l  109 (292)
                      .|.++.||+...         .+..+++|...  ... ......+.+|..+++.+.  +..+.+++.++...   +..++
T Consensus        48 ~G~sn~~y~v~~---------~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~  118 (359)
T 3dxp_A           48 GGQSNPTFKLVT---------PGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY  118 (359)
T ss_dssp             C-CCSCEEEEEC---------SSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred             CcccceEEEEEE---------CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence            677899999887         55788888876  321 122346788999999996  45578888888765   45899


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC------------------------------
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF------------------------------  159 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~------------------------------  159 (292)
                      ||||++|.++.+..         ...++......++.+++..|..||.-.                              
T Consensus       119 vme~v~G~~l~~~~---------~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (359)
T 3dxp_A          119 IMEFVSGRVLWDQS---------LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLS  189 (359)
T ss_dssp             EEECCCCBCCCCTT---------CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCeecCCCc---------cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhc
Confidence            99999987774322         234678888899999999999999520                              


Q ss_pred             -------------------------CCCcccCCCCCCceEecCCCc--eEEeecccccc
Q 044211          160 -------------------------PRPVIFRDFKLSNILFNEENV--AKLFDFSFSIS  191 (292)
Q Consensus       160 -------------------------~~~i~H~dlk~~nili~~~~~--~kl~Dfg~a~~  191 (292)
                                               ...++|+|+++.||+++.++.  +.|.||+.+..
T Consensus       190 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          190 ETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             CCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             CCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                                     246899999999999997653  68999998864

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.60  E-value=3.5e-07  Score=75.74  Aligned_cols=134  Identities=13%  Similarity=0.043  Sum_probs=92.6

Q ss_pred             ccCCC-eeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGY-KLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g-~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|..+ .||+.....       .+..+++|.-...   ....+..|...|+.+. +-.+.++++++...+..++|||+++
T Consensus        34 ~G~S~~~v~rl~~~~-------~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~  103 (272)
T 4gkh_A           34 VGQSGATIYRLYGKP-------NAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIP  103 (272)
T ss_dssp             CSSSSCEEEEEECCT-------TCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCC
T ss_pred             CCCcCCeEEEEEecC-------CCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeC
Confidence            45554 588877653       5678999986533   3456888999999884 3346788888888888999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC-------------------------------------
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVG-------------------------------------  158 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~-------------------------------------  158 (292)
                      +.++.+....           .......+..+++..|..||.-                                     
T Consensus       104 G~~~~~~~~~-----------~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (272)
T 4gkh_A          104 GKTAFQVLEE-----------YPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERN  172 (272)
T ss_dssp             SEEHHHHHHH-----------CGGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGT
T ss_pred             CccccccccC-----------CHHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhcccccc
Confidence            8777665511           1112233445555555555521                                     


Q ss_pred             ------------------CCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          159 ------------------FPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       159 ------------------~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                                        ....++|+|+.+.||+++.++.+-|.||+.+..-
T Consensus       173 ~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~g  224 (272)
T 4gkh_A          173 GWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIA  224 (272)
T ss_dssp             TCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             chHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccccC
Confidence                              0113689999999999998777789999887543

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.57  E-value=3e-07  Score=77.68  Aligned_cols=132  Identities=19%  Similarity=0.168  Sum_probs=91.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCC--ccceeeeeecCC---cceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRC--IFKLIGCCLETQ---IPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~n--iv~~~~~~~~~~---~~~lv~  111 (292)
                      .|.+..||+..            ..+++|.....  .....+.+|..+++.+. +..  +..++.......   ..|+||
T Consensus        30 ~G~~n~v~~v~------------~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm   95 (304)
T 3sg8_A           30 EGNDCIAYEIN------------RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGF   95 (304)
T ss_dssp             ECSSEEEEEST------------TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEE
T ss_pred             CCCcceEEEEC------------CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEE
Confidence            67777888753            34888986432  34567889999999884 333  345555443332   358999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC---------------------------------
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVG---------------------------------  158 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~---------------------------------  158 (292)
                      ++++|.+|.+..         ...++..+...++.+++..+..||.-                                 
T Consensus        96 ~~i~G~~l~~~~---------~~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (304)
T 3sg8_A           96 TKIKGVPLTPLL---------LNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELK  166 (304)
T ss_dssp             ECCCCEECCHHH---------HHTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSC
T ss_pred             cccCCeECCccc---------cccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCC
Confidence            999998876543         12356666677777777777777731                                 


Q ss_pred             ----------------------CCCCcccCCCCCCceEecC--CCceEEeeccccccc
Q 044211          159 ----------------------FPRPVIFRDFKLSNILFNE--ENVAKLFDFSFSISI  192 (292)
Q Consensus       159 ----------------------~~~~i~H~dlk~~nili~~--~~~~kl~Dfg~a~~~  192 (292)
                                            ....++|+|++|.||+++.  ...+.+.||+.+..-
T Consensus       167 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~  224 (304)
T 3sg8_A          167 GPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS  224 (304)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred             cccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence                                  0135799999999999998  556889999988643

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.37  E-value=2.5e-06  Score=72.08  Aligned_cols=132  Identities=11%  Similarity=0.008  Sum_probs=84.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCC---Cccceeeeee-cCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHR---CIFKLIGCCL-ETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~~~~~~~-~~~~~~lv~e~  113 (292)
                      .|....||+.            +..+++|....  ......+..|..+|+.+.+.   .+.+++.+.. ..+..++|||+
T Consensus        29 ~G~~n~v~~v------------g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~   94 (306)
T 3tdw_A           29 EGFRNYAILV------------NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRK   94 (306)
T ss_dssp             ECSSEEEEEE------------TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEEC
T ss_pred             CCcceeEEEE------------CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEec
Confidence            5555677775            23588888432  23456788999999999642   3556666664 34557899999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC-----------------------------------
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVG-----------------------------------  158 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~-----------------------------------  158 (292)
                      ++|.++....         -..++......++.+++..|..||.-                                   
T Consensus        95 i~G~~l~~~~---------~~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~  165 (306)
T 3tdw_A           95 VQGQILGEDG---------MAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLD  165 (306)
T ss_dssp             CCSEECHHHH---------HTTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSC
T ss_pred             cCCeECchhh---------hhhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccc
Confidence            9987776532         01123333334444444444444421                                   


Q ss_pred             ----------------------CCCCcccCCCCCCceEecC---CCc-eEEeeccccccc
Q 044211          159 ----------------------FPRPVIFRDFKLSNILFNE---ENV-AKLFDFSFSISI  192 (292)
Q Consensus       159 ----------------------~~~~i~H~dlk~~nili~~---~~~-~kl~Dfg~a~~~  192 (292)
                                            ....++|+|+.|.||+++.   ++. ..|.||+.+..-
T Consensus       166 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g  225 (306)
T 3tdw_A          166 ESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS  225 (306)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred             hhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence                                  1345699999999999997   345 589999987543

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.20  E-value=2.9e-06  Score=73.17  Aligned_cols=82  Identities=4%  Similarity=-0.161  Sum_probs=49.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcC-C--CCccceeeeeecC---Ccce
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMI-H--RCIFKLIGCCLET---QIPI  108 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~-h--~niv~~~~~~~~~---~~~~  108 (292)
                      .|....+|+....... .+..++..+++|......   ......+..|..+++.|. +  -.+.++++++...   +..+
T Consensus        31 ~G~~n~~y~v~~~~~~-~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~g~~~  109 (357)
T 3ats_A           31 TGMSSETIILTARWQQ-DGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVLGTPF  109 (357)
T ss_dssp             TSSEEEEEEEEEEEEE-TTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTTSSCE
T ss_pred             CCccceEEEEEEeccc-CCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCccCCce
Confidence            5667788887651000 000016789999864321   001234678888888884 3  3466788777654   3568


Q ss_pred             EEEeccCCCChh
Q 044211          109 LVFEYINCGSLA  120 (292)
Q Consensus       109 lv~e~~~~gsL~  120 (292)
                      +||||++|.++.
T Consensus       110 ~v~e~l~G~~l~  121 (357)
T 3ats_A          110 FLMDYVEGVVPP  121 (357)
T ss_dssp             EEEECCCCBCCC
T ss_pred             EEEEecCCCChh
Confidence            999999976654

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.98  E-value=6.1e-05  Score=64.20  Aligned_cols=31  Identities=16%  Similarity=0.246  Sum_probs=28.0

Q ss_pred             CCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          160 PRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      ...++|+|+.+.||+++.++.+.|.||+.+.
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            5789999999999999877889999999875

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.92  E-value=2.5e-05  Score=68.31  Aligned_cols=70  Identities=11%  Similarity=0.033  Sum_probs=45.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-------chHHHHHHHHHHHHhcCC--C-CccceeeeeecCCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-------RTYDCCINNIVYASQMIH--R-CIFKLIGCCLETQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~e~~~l~~l~h--~-niv~~~~~~~~~~~~  107 (292)
                      .|.++.||++....       .++.|++|.......       ....++..|...++.+..  + .+.+++.+  .....
T Consensus        40 ~G~~n~vyrv~~~~-------~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~  110 (397)
T 2olc_A           40 DGNLNYVFHIYDQE-------HDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMA  110 (397)
T ss_dssp             SSSSEEEEEEEC-----------CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTT
T ss_pred             CCceEEEEEEEECC-------CCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCcc
Confidence            67889999997642       567899998653211       123457789999988742  3 33455543  34557


Q ss_pred             eEEEeccCC
Q 044211          108 ILVFEYINC  116 (292)
Q Consensus       108 ~lv~e~~~~  116 (292)
                      ++||||+++
T Consensus       111 ~lvmE~l~g  119 (397)
T 2olc_A          111 VTVMEDLSH  119 (397)
T ss_dssp             EEEECCCTT
T ss_pred             EEEEEeCCC
Confidence            899999975

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.83  E-value=0.00013  Score=60.84  Aligned_cols=69  Identities=12%  Similarity=0.118  Sum_probs=50.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCC---CccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHR---CIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|..+.||+....        +|+.|++|............+..|...|+.|.-.   -+.+++++.    ..++||||.
T Consensus        25 ~G~~~~vyrv~l~--------DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~l   92 (288)
T 3f7w_A           25 HSHRWHLYRVELA--------DGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWV   92 (288)
T ss_dssp             EETTEEEEEEEET--------TSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECC
T ss_pred             CCCCeEEEEEEEC--------CCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEee
Confidence            6788999999987        8999999987655444445678899999988422   344555542    357999998


Q ss_pred             CCCC
Q 044211          115 NCGS  118 (292)
Q Consensus       115 ~~gs  118 (292)
                      +.+.
T Consensus        93 ~~~~   96 (288)
T 3f7w_A           93 DERP   96 (288)
T ss_dssp             CCCC
T ss_pred             cccC
Confidence            8654

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.72  E-value=0.00032  Score=59.26  Aligned_cols=137  Identities=11%  Similarity=0.030  Sum_probs=87.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC---CCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI---HRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|.+..+|+...         ++..+++|.....   ....+..|...|+.|.   ...+.+++.+....+..++||||+
T Consensus        46 gG~~n~~y~v~~---------~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l  113 (312)
T 3jr1_A           46 SGEMNEIWLIND---------EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEAL  113 (312)
T ss_dssp             CSSSSEEEEEES---------SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECC
T ss_pred             CccceeeeEEEE---------CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEec
Confidence            677799999876         6778899987543   3566888999998884   256778888887778899999999


Q ss_pred             CCCCh--------hHHhhh-hCCCCCC-----------------CCCCCHHHHH---HHH----------------HHHH
Q 044211          115 NCGSL--------ADRIRI-HHTPQPQ-----------------HEPLLLTHRL---KIA----------------MDIA  149 (292)
Q Consensus       115 ~~gsL--------~~~l~~-~~~~~~~-----------------~~~l~~~~~~---~i~----------------~~i~  149 (292)
                      ++.++        ...+.+ |......                 ...-+|....   ++.                ..++
T Consensus       114 ~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~  193 (312)
T 3jr1_A          114 NKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIV  193 (312)
T ss_dssp             CCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHH
T ss_pred             cCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence            98654        233333 2211100                 0011232221   111                1122


Q ss_pred             HHH-HHhhc-CCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          150 NAI-AYLHV-GFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       150 ~~l-~~lh~-~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ..+ ..|.. .....++|+|+.+.|++++.++ +.+.||.
T Consensus       194 ~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          194 QIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             HHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence            222 23321 1246789999999999999887 8899984

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.22  E-value=0.0062  Score=53.51  Aligned_cols=32  Identities=16%  Similarity=0.373  Sum_probs=28.0

Q ss_pred             CCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          160 PRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      ...++|+|++|.|||++.++ +++.||+.+..-
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            67899999999999999876 999999887643

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.10  E-value=0.0056  Score=51.87  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=27.9

Q ss_pred             CCCcccCCCCCCceEecCC----CceEEeeccccccc
Q 044211          160 PRPVIFRDFKLSNILFNEE----NVAKLFDFSFSISI  192 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~----~~~kl~Dfg~a~~~  192 (292)
                      ...++|+|+.+.||+++.+    +.+.|.||+.+..-
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            4678999999999999874    67999999887643

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=97.08  E-value=0.014  Score=49.13  Aligned_cols=143  Identities=14%  Similarity=0.133  Sum_probs=78.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCC--Cccceeee-----eecCCcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHR--CIFKLIGC-----CLETQIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~--niv~~~~~-----~~~~~~~~lv  110 (292)
                      .|....||+....        +|+.+++|...... .....+..|...++.+...  .+.+++..     ....+..+++
T Consensus        35 ~g~~n~~y~v~~~--------~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l  105 (328)
T 1zyl_A           35 NSYENRVYQFQDE--------DRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAV  105 (328)
T ss_dssp             CCSSSEEEEECCT--------TCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEE
T ss_pred             cCcccceEEEEcC--------CCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEE
Confidence            3556678887764        67789999987432 1345667788888877422  23444433     1123455789


Q ss_pred             EeccCCCChh-----------HHhhh-hC--C--CCCCCCCCCHHHH----------------------HHHHHHHHHHH
Q 044211          111 FEYINCGSLA-----------DRIRI-HH--T--PQPQHEPLLLTHR----------------------LKIAMDIANAI  152 (292)
Q Consensus       111 ~e~~~~gsL~-----------~~l~~-~~--~--~~~~~~~l~~~~~----------------------~~i~~~i~~~l  152 (292)
                      +++++|.++.           ..+.+ |.  .  .......++....                      ...+..++..+
T Consensus       106 ~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  185 (328)
T 1zyl_A          106 FPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAV  185 (328)
T ss_dssp             EECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHH
Confidence            9999864432           11111 11  0  0001112221111                      11122222223


Q ss_pred             HHhhc-CCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          153 AYLHV-GFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       153 ~~lh~-~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      .-+.. .....++|+|+++.||+++ + .+.+.||+.+..
T Consensus       186 ~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          186 TAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             HHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             HHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            22211 1145689999999999999 4 899999987753

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.04  E-value=0.0062  Score=52.75  Aligned_cols=148  Identities=18%  Similarity=0.136  Sum_probs=81.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|-...+|+.....-.+....+++.|++|..... ......+.+|..+++.|. +.-..++++.+..    .+|+||++|
T Consensus        60 GG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e~i~G  134 (379)
T 3feg_A           60 GGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQYIPS  134 (379)
T ss_dssp             ----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEECCSE
T ss_pred             CcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEEEecC
Confidence            4556788888763100000013478999986432 223455678999998884 3333567766643    389999987


Q ss_pred             CChh--------------HHhhh-hCCCCCCCCCC--CHHHHHHHHHHHHH-------------------HHHH----hh
Q 044211          117 GSLA--------------DRIRI-HHTPQPQHEPL--LLTHRLKIAMDIAN-------------------AIAY----LH  156 (292)
Q Consensus       117 gsL~--------------~~l~~-~~~~~~~~~~l--~~~~~~~i~~~i~~-------------------~l~~----lh  156 (292)
                      .+|.              +.+++ |..........  -+.++.++..++..                   .+..    |.
T Consensus       135 ~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~L~  214 (379)
T 3feg_A          135 RPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLE  214 (379)
T ss_dssp             EECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHHHHH
T ss_pred             ccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHh
Confidence            4442              22222 22111111122  23455555544322                   1222    22


Q ss_pred             c-CCCCCcccCCCCCCceEecCC----CceEEeeccccc
Q 044211          157 V-GFPRPVIFRDFKLSNILFNEE----NVAKLFDFSFSI  190 (292)
Q Consensus       157 ~-~~~~~i~H~dlk~~nili~~~----~~~kl~Dfg~a~  190 (292)
                      . .....++|+|+.+.||+++.+    +.+.+.||..+.
T Consensus       215 ~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          215 STPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             TSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             hcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence            1 113468999999999999876    789999998875

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.76  E-value=0.0085  Score=50.01  Aligned_cols=31  Identities=19%  Similarity=0.190  Sum_probs=25.4

Q ss_pred             CCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          160 PRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ...++|+|+.+.||+ ..++.+.+.||..+..
T Consensus       172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CCEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             CceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            456899999999999 5566789999988753

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.67  E-value=0.012  Score=49.46  Aligned_cols=142  Identities=13%  Similarity=0.127  Sum_probs=73.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCC--ccceeee------eecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRC--IFKLIGC------CLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~~~~~------~~~~~~~~l  109 (292)
                      .|....+|+...         ++..+++|......  ....+..|..++..|...+  +.+++..      ....+..++
T Consensus        32 ~G~~n~~~~v~~---------~~g~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~  100 (322)
T 2ppq_A           32 EGVENSNFLLHT---------TKDPLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAA  100 (322)
T ss_dssp             C---EEEEEEEE---------SSCCEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEE
T ss_pred             CCcccceEEEEe---------CCccEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEE
Confidence            355578888876         33478899887521  1234556777777764222  2333321      112345689


Q ss_pred             EEeccCCCChh-----------HHhhh-hC--CCCCCC--CCCC---HHHHHH------------HHHHHHHHHHHhhc-
Q 044211          110 VFEYINCGSLA-----------DRIRI-HH--TPQPQH--EPLL---LTHRLK------------IAMDIANAIAYLHV-  157 (292)
Q Consensus       110 v~e~~~~gsL~-----------~~l~~-~~--~~~~~~--~~l~---~~~~~~------------i~~~i~~~l~~lh~-  157 (292)
                      +++|++|..+.           ..+.+ |.  ......  ....   +.....            +...+...+..+.. 
T Consensus       101 l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~  180 (322)
T 2ppq_A          101 LISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAH  180 (322)
T ss_dssp             EEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Confidence            99999875432           11211 11  000000  0011   111000            00113333444431 


Q ss_pred             ---CCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          158 ---GFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       158 ---~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                         .....++|+|+.+.||+++.++...+.||+.+.
T Consensus       181 ~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          181 WPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             CCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             CcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence               113568999999999999987666899998875

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=96.64  E-value=0.018  Score=51.25  Aligned_cols=70  Identities=7%  Similarity=-0.089  Sum_probs=43.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCc-cceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCI-FKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|-...+|+.....       .+..+++|+......... ....|..+++.|...++ .++++.+.  +  .+|+||+++
T Consensus       118 gG~tN~~y~v~~~~-------~~~~~vLRi~g~~~~~~i-dR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G  185 (458)
T 2qg7_A          118 GGITNILIKVKDMS-------KQAKYLIRLYGPKTDEII-NREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDG  185 (458)
T ss_dssp             C--CEEEEEEEETT-------TTEEEEEEEECC-CCSCS-CHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCS
T ss_pred             CCeEeEEEEEEECC-------CCceEEEEECCCChhhhc-CHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCC
Confidence            45568899988741       247899998754322111 12478999998865444 47777663  2  369999986


Q ss_pred             CCh
Q 044211          117 GSL  119 (292)
Q Consensus       117 gsL  119 (292)
                      .+|
T Consensus       186 ~~l  188 (458)
T 2qg7_A          186 YAL  188 (458)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            433

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.52  E-value=0.017  Score=50.93  Aligned_cols=73  Identities=15%  Similarity=-0.010  Sum_probs=44.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCc-cceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCI-FKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|-...+|+.....-.......+..+++|+.....  ....+.+|..+++.|...++ .++++.+..    .+|+||++|
T Consensus        83 gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~--~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e~l~G  156 (429)
T 1nw1_A           83 GGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--TESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEEYIPS  156 (429)
T ss_dssp             CCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--CHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEECCCCE
T ss_pred             CCcccceEEEEeCCCccccCCCCceEEEEEeCCCC--cHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEEEeCC
Confidence            45568899987631000000024689999984421  12456689999998853333 567766532    389999975

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=96.38  E-value=0.031  Score=47.53  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=27.7

Q ss_pred             CCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          160 PRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ...++|+|+.+.||+++.++.+.|.||+.+..
T Consensus       205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            35689999999999999888899999987753

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=96.15  E-value=0.014  Score=50.23  Aligned_cols=76  Identities=9%  Similarity=-0.071  Sum_probs=40.9

Q ss_pred             ccCCCeeEeeecCCCC-ccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCC-ccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRP-ISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRC-IFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~-~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      .|....+|+.....-. ......+..+++|+....... ......|..+++.+...+ +.++++..    .-++|+||++
T Consensus        43 ~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~----~~~~v~e~i~  117 (369)
T 3c5i_A           43 SGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTF----NGGRIEEWLY  117 (369)
T ss_dssp             ---CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEE----TTEEEEECCC
T ss_pred             CcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEec----CCcEEEEEec
Confidence            4556789988763000 000001267888887543211 112357888888875333 34666544    2478999998


Q ss_pred             CCC
Q 044211          116 CGS  118 (292)
Q Consensus       116 ~gs  118 (292)
                      |.+
T Consensus       118 G~~  120 (369)
T 3c5i_A          118 GDP  120 (369)
T ss_dssp             SEE
T ss_pred             CCc
Confidence            643

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=95.10  E-value=0.07  Score=46.85  Aligned_cols=77  Identities=9%  Similarity=-0.052  Sum_probs=43.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|-...+|+.....-.......++.|++|......... -...+|..+++.+. +.-..++++.+    .-++|+||++|
T Consensus        80 GG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~-idR~~E~~~l~~L~~~gi~P~l~~~~----~~~~I~efI~G  154 (424)
T 3mes_A           80 SGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKF-YDSKVELDVFRYLSNINIAPNIIADF----PEGRIEEFIDG  154 (424)
T ss_dssp             CCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CC-CCHHHHHHHHHHHHHTTSSCCEEEEE----TTEEEEECCCS
T ss_pred             CCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchh-cCHHHHHHHHHHHHhcCCCCCEEEEc----CCCEEEEEeCC
Confidence            45567888887631000000015789999865432111 12357888888884 33334666543    23789999997


Q ss_pred             CCh
Q 044211          117 GSL  119 (292)
Q Consensus       117 gsL  119 (292)
                      .+|
T Consensus       155 ~~l  157 (424)
T 3mes_A          155 EPL  157 (424)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            553

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=90.86  E-value=0.027  Score=50.15  Aligned_cols=58  Identities=7%  Similarity=-0.063  Sum_probs=16.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEE------EeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSV------MKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE  103 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vai------K~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~  103 (292)
                      -| ||.||+|.+..       +..+||+      |..+..  ..+....+.+|..+++.++|+|+++.+++...
T Consensus       150 lG-fG~v~~g~~~~-------~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          150 VG-YTTLNREPAYK-------KHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             SS-BCCC----------------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred             CC-chhhhcccccc-------cCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence            45 99999999953       3468888      665542  22334568889999999999999999888754

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=90.08  E-value=1  Score=35.42  Aligned_cols=87  Identities=14%  Similarity=0.151  Sum_probs=61.7

Q ss_pred             CCCCccceeeeeecCCcceEEEeccC-CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHH-HhhcCCCCCcccCC
Q 044211           90 IHRCIFKLIGCCLETQIPILVFEYIN-CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIA-YLHVGFPRPVIFRD  167 (292)
Q Consensus        90 ~h~niv~~~~~~~~~~~~~lv~e~~~-~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~-~lh~~~~~~i~H~d  167 (292)
                      .||+.  -..+-...+.+.+.++.-+ .-++....           ..+...+++++..++.-.. +++     .-+|--
T Consensus        48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~-----------~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~  109 (219)
T 4ano_A           48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR-----------KTTLLSRIRAAIHLVSKVKHHSA-----RRLIFI  109 (219)
T ss_dssp             SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH-----------TSCHHHHHHHHHHHHHHHSSCCS-----SSEECC
T ss_pred             cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH-----------hcCHHHHHHHHHHHHHHHHHhhh-----CceeEE
Confidence            46766  3334456667666666653 23444333           4788889999998877555 444     457788


Q ss_pred             CCCCceEecCCCceEEeecccccccCC
Q 044211          168 FKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       168 lk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      +.|+||+++.++.+++.-.|+...+.+
T Consensus       110 l~P~NL~f~~~~~p~i~hRGi~~~lpP  136 (219)
T 4ano_A          110 VCPENLMFNRALEPFFLHVGVKESLPP  136 (219)
T ss_dssp             CCGGGEEECTTCCEEESCCEETTTBSS
T ss_pred             EeCceEEEeCCCcEEEEEcCCcccCCC
Confidence            999999999999999999999776644

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=89.29  E-value=0.77  Score=36.01  Aligned_cols=89  Identities=6%  Similarity=0.015  Sum_probs=63.6

Q ss_pred             CCCCccceeeeeecCCcceEEEeccC-CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCC
Q 044211           90 IHRCIFKLIGCCLETQIPILVFEYIN-CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDF  168 (292)
Q Consensus        90 ~h~niv~~~~~~~~~~~~~lv~e~~~-~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dl  168 (292)
                      .||+.+.. .+-...+.+.+.++.-. .-++.. +          ...+...+++++..|+.-..+++     .-+|--+
T Consensus        43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-i----------k~~~~~eKlr~l~ni~~l~~~~~-----~r~tf~L  105 (215)
T 4ann_A           43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-I----------KSFTKNEKLRYLLNIKNLEEVNR-----TRYTFVL  105 (215)
T ss_dssp             CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-G----------GGSCHHHHHHHHHHGGGGGGGGG-----SSEECCC
T ss_pred             cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-H----------HhcCHHHHHHHHHHHHHHHHHhc-----CceEEEE
Confidence            46777755 45556666555555543 223433 2          35788899999999988775555     3467889


Q ss_pred             CCCceEecCCCceEEeecccccccCCC
Q 044211          169 KLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       169 k~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      .|+|++++.++.+++.-.|+...+.+-
T Consensus       106 ~P~NL~f~~~~~p~i~~RGik~~l~P~  132 (215)
T 4ann_A          106 APDELFFTRDGLPIAKTRGLQNVVDPL  132 (215)
T ss_dssp             SGGGEEECTTSCEEESCCEETTTBSCC
T ss_pred             ecceEEEcCCCCEEEEEccCccCCCCC
Confidence            999999999999999999987666543

>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A

Probab=87.94  E-value=12  Score=34.13  Aligned_cols=119  Identities=14%  Similarity=0.125  Sum_probs=61.8

Q ss_pred             EEEEEeecCCCcchHHHHHHHHHHHHhc-C--CCC-ccceeeeeecCCcceEEEeccCCC----------ChhHHhhhhC
Q 044211           62 PVSVMKFDESKPRTYDCCINNIVYASQM-I--HRC-IFKLIGCCLETQIPILVFEYINCG----------SLADRIRIHH  127 (292)
Q Consensus        62 ~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~--h~n-iv~~~~~~~~~~~~~lv~e~~~~g----------sL~~~l~~~~  127 (292)
                      .+++|.  ..+......+..=+.++.++ .  ..+ -+..|.+....... =+.|++++.          ++.++++++.
T Consensus       367 ~~i~K~--gDDLRQD~~~~Ql~~l~n~il~~~~ldL~i~~Y~Vipls~~~-GlIE~V~~~tl~~il~~~~~l~~~f~~~~  443 (614)
T 3ls8_A          367 PVIFKH--GDDLRQDQLILQIISLMDKLLRKENLDLKLTPYKVLATSTKH-GFMQFIQSVPVAEVLDTEGSIQNFFRKYA  443 (614)
T ss_dssp             EEEEEE--SSCCHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCEEESSSSE-EEEECCCCEEHHHHHHHTSSHHHHHHHHS
T ss_pred             EEEEec--CCcchHHHHHHHHHHHHHHHHHhcCCCceeeccEEEEecCCC-ceEEEeCCccHHHHHHccChHHHHHHHhC
Confidence            355565  23333444444444555444 1  111 13445555444332 345666543          4444554443


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHH--HHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          128 TPQPQHEPLLLTHRLKIAMDIA--NAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       128 ~~~~~~~~l~~~~~~~i~~~i~--~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      ..........+..+..++..+|  +-+.|+=     ++  +|=.++||||+.+|.+.-+|||...
T Consensus       444 ~~~~~~~~~~~~a~~nF~~S~A~ySvv~YIL-----Gi--gDRH~~NILld~tG~v~HIDFG~~f  501 (614)
T 3ls8_A          444 PSENGPNGISAEVMDTYVKSCAGYCVITYIL-----GV--GDRHLDNLLLTKTGKLFHIDFGYIL  501 (614)
T ss_dssp             BCTTSGGGBCHHHHHHHHHHHHHHHHHHHHH-----TC--CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred             CCccccccccHHHHHHHHHHHHHHhHhheee-----ec--cCCCCcceeEcCCCCEeeeehHHhh
Confidence            2111111123344455555443  3344444     22  6788999999999999999999974

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=80.45  E-value=0.9  Score=39.35  Aligned_cols=29  Identities=31%  Similarity=0.446  Sum_probs=24.3

Q ss_pred             CcccCCCCCCceEe------cCCCceEEeeccccc
Q 044211          162 PVIFRDFKLSNILF------NEENVAKLFDFSFSI  190 (292)
Q Consensus       162 ~i~H~dlk~~nili------~~~~~~kl~Dfg~a~  190 (292)
                      .+.|+|+.+.||++      +++..+++.||..|.
T Consensus       245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~  279 (401)
T 3g15_A          245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS  279 (401)
T ss_dssp             EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred             eeEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence            35699999999999      456779999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	292
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-21
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-18
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-18
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	4e-18
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	6e-18
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	6e-18
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	9e-18
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-17
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-17
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-17
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-17
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-16
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-16
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-16
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-16
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	3e-16
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	4e-16
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	7e-16
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-15
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-15
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-15
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-15
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-15
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	4e-15
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	5e-15
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	6e-15
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	7e-15
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-14
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-14
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	4e-14
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	7e-14
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	8e-14
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	9e-14
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-13
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	4e-13
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-12
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-12
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	8e-12
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-11
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	5e-11
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	6e-11
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-10
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-10
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	7e-10
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-09
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-09
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-09
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	7e-09
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	7e-09
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	8e-09
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-08
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-08
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-08
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-08
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	8e-08
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-07
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	3e-06
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-05
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	6e-05
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-04

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 3e-21
 Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 31/241 (12%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADR 122
           V ++      P+      N +    +  H  I   +G     Q+  +V ++    SL   
Sbjct: 35  VKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQL-AIVTQWCEGSSLYHH 93

Query: 123 IRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAK 182
           + I  T         +   + IA   A  + YLH    + +I RD K +NI  +E+   K
Sbjct: 94  LHIIETK------FEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVK 144

Query: 183 LFDFSFSISIPEGE-THISELLSG---LRAFDLARLNEDDGY----------VVLLDHI- 227
           + DF  +        +H  E LSG     A ++ R+ + + Y          +VL + + 
Sbjct: 145 IGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 204

Query: 228 -KKYFEEDRLNEIIDPLIMGD----RSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVA 281
            +  +      + I  ++                 +A   L+ EC+ +   +RP    + 
Sbjct: 205 GQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 264

Query: 282 K 282
            
Sbjct: 265 A 265

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (198), Expect = 2e-18
 Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 24/230 (10%)

Query: 60  ERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSL 119
           +  V++    E    + D  I        + H  + +L G C + +   ++ EY+  G L
Sbjct: 28  QYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCL 86

Query: 120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
            + +      +           L++  D+  A+ YL     +  + RD    N L N++ 
Sbjct: 87  LNYL------REMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQG 137

Query: 180 VAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGY-------------VVLLDH 226
           V K+ DF  S  + + E   S        +    +     +               +   
Sbjct: 138 VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSL 197

Query: 227 IKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP 276
            K  +E    +E  + +  G R         +    +++ C +E   +RP
Sbjct: 198 GKMPYERFTNSETAEHIAQGLRLYR-PHLASEKVYTIMYSCWHEKADERP 246

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 3e-18
 Identities = 35/224 (15%), Positives = 64/224 (28%), Gaps = 36/224 (16%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHE---------------- 134
           H  I  L+G C  +    L+FEY   G L + +R       + E                
Sbjct: 100 HENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLN 159

Query: 135 PLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE 194
            L     L  A  +A  + +L     +  + RD    N+L     V K+ DF  +  I  
Sbjct: 160 VLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMS 216

Query: 195 GETHIS-------------ELLSGLRAFDLARLNEDDGYVV--LLDHIKKYFEEDRLNEI 239
              ++              E L     + +       G ++  +       +    ++  
Sbjct: 217 DSNYVVRGNARLPVKWMAPESLFE-GIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDAN 275

Query: 240 IDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK 282
              LI             +    ++  C       RP   ++  
Sbjct: 276 FYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTS 319

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 4e-18
 Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 24/230 (10%)

Query: 60  ERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSL 119
              V+V    +    + D  +       Q+ H+ + +L     +  I  ++ EY+  GSL
Sbjct: 37  HTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI-YIITEYMENGSL 94

Query: 120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
            D ++      P    L +   L +A  IA  +A++     R  I RD + +NIL ++  
Sbjct: 95  VDFLK-----TPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTL 146

Query: 180 VAKLFDFSFSISIPEGETHISELLSG-LRAFDLARLNED--------DGYVVLLDHI--- 227
             K+ DF  +  I + E    E     ++      +N            + +LL  I   
Sbjct: 147 SCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTH 206

Query: 228 -KKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP 276
            +  +      E+I  L  G R         +    L+  C  E P DRP
Sbjct: 207 GRIPYPGMTNPEVIQNLERGYRMVR-PDNCPEELYQLMRLCWKERPEDRP 255

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (196), Expect = 6e-18
 Identities = 36/240 (15%), Positives = 72/240 (30%), Gaps = 26/240 (10%)

Query: 61  RPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLA 120
              +    D       +  +  I   +   H  I KL+          ++ E+   G++ 
Sbjct: 38  VLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVD 97

Query: 121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV 180
             +           PL  +    +     +A+ YLH      +I RD K  NILF  +  
Sbjct: 98  AVM------LELERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAGNILFTLDGD 148

Query: 181 AKLFDFSFSISIPEGETHIS-----------ELLSGLRAFDLARLNEDDGY---VVL--L 224
            KL DF  S                      E++    + D     + D +   + L  +
Sbjct: 149 IKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEM 208

Query: 225 DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL-QAFAHLIFECVNESPVDRPMVDVAKK 283
             I+    E     ++  +   +        +    F   + +C+ ++   R       +
Sbjct: 209 AEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ 268

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (195), Expect = 6e-18
 Identities = 42/227 (18%), Positives = 83/227 (36%), Gaps = 28/227 (12%)

Query: 71  SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLADRIRIHHTP 129
               T    +      +Q+ H  + +L+G  +E +  + +V EY+  GSL D +R     
Sbjct: 39  KNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRG-- 96

Query: 130 QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
                 L     LK ++D+  A+ YL        + RD    N+L +E+NVAK+ DF  +
Sbjct: 97  ---RSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT 150

Query: 190 ISIPEGETHIS--------ELLSGLR---AFDLARLNEDDGYVV--LLDHIKKYFEEDRL 236
                 +            E L   +     D+       G ++  +    +  +    L
Sbjct: 151 KEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSF----GILLWEIYSFGRVPYPRIPL 206

Query: 237 NEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK 282
            +++  +  G +          A   ++  C +     RP  + + +
Sbjct: 207 KDVVPRVEKGYKM-DAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLRE 252

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (196), Expect = 9e-18
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 9/129 (6%)

Query: 70  ESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTP 129
           E KP   +  I  +    +     I    G         +  E+++ GSL   ++     
Sbjct: 42  EIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK----- 96

Query: 130 QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS 189
             +   +      K+++ +   + YL       ++ RD K SNIL N     KL DF  S
Sbjct: 97  --KAGRIPEQILGKVSIAVIKGLTYLR--EKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

Query: 190 ISIPEGETH 198
             + +   +
Sbjct: 153 GQLIDSMAN 161

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.3 bits (195), Expect = 1e-17
 Identities = 38/229 (16%), Positives = 73/229 (31%), Gaps = 24/229 (10%)

Query: 67  KFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH 126
              +     +   I  + +  ++ H    +  GC L      LV EY    +        
Sbjct: 50  YSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEV-- 107

Query: 127 HTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
                  +PL       +       +AYLH      +I RD K  NIL +E  + KL DF
Sbjct: 108 -----HKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDF 159

Query: 187 SFSISIPEGETHISELLSGLRAFDLARLNEDDGY----------VVLLDHI--KKYFEED 234
             +  +    + +        A ++    ++  Y          +  ++    K      
Sbjct: 160 GSASIMAPANSFVGTP--YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM 217

Query: 235 RLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRPMVDVAKK 283
                +  +   +     +    + F + +  C+ + P DRP  +V  K
Sbjct: 218 NAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK 266

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 1e-17
 Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 29/218 (13%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHH-----------TPQPQHEPLLLT 139
           H  I  L+G C      +++ EY   G L + +R                +     L L 
Sbjct: 86  HMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLE 145

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHI 199
             L  +  +A  +A+L     +  I RD    NIL     + K+ DF  +  I     ++
Sbjct: 146 DLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYV 202

Query: 200 SELLSGLRAFDLARLNEDDGY--------------VVLLDHIKKYFEEDRLNEIIDPLIM 245
            +  + L    +A  +  +                  L       +    ++     +I 
Sbjct: 203 VKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIK 262

Query: 246 GDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK 282
                   +        ++  C +  P+ RP    + +
Sbjct: 263 EGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 300

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 2e-17
 Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 19/229 (8%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLET--QIPILVFEYINCGSLA 120
              + +           ++ +    ++ H  I +     ++       +V EY   G LA
Sbjct: 34  WKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLA 93

Query: 121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLH--VGFPRPVIFRDFKLSNILFNEE 178
             I        + + L     L++   +  A+   H        V+ RD K +N+  + +
Sbjct: 94  SVI---TKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGK 150

Query: 179 NVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNED------DGY---VVL--LDHI 227
              KL DF  +  +    +     +         ++N        D +    +L  L  +
Sbjct: 151 QNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCAL 210

Query: 228 KKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP 276
              F      E+   +  G        +       +I   +N     RP
Sbjct: 211 MPPFTAFSQKELAGKIREGKFR-RIPYRYSDELNEIITRMLNLKDYHRP 258

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (192), Expect = 2e-17
 Identities = 37/236 (15%), Positives = 81/236 (34%), Gaps = 24/236 (10%)

Query: 61  RPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLA 120
             V+V    E      +  +       ++ H  + +L+G C       ++ E++  G+L 
Sbjct: 43  LTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLL 101

Query: 121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV 180
           D +R  +      + +     L +A  I++A+ YL     +  I RD    N L  E ++
Sbjct: 102 DYLRECN-----RQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHL 153

Query: 181 AKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGY-------------VVLLDHI 227
            K+ DF  S  +                +        + +               +  + 
Sbjct: 154 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 213

Query: 228 KKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK 282
              +    L+++ + L+  D      +   +    L+  C   +P DRP   ++ +
Sbjct: 214 MSPYPGIDLSQVYE-LLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ 268

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.4 bits (187), Expect = 1e-16
 Identities = 45/246 (18%), Positives = 81/246 (32%), Gaps = 36/246 (14%)

Query: 69  DESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH-- 126
           +E+               ++  +  I KL+G C   +   L+FEY+  G L + +R    
Sbjct: 53  EEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSP 112

Query: 127 ---------------HTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLS 171
                              P   PL    +L IA  +A  +AYL     R  + RD    
Sbjct: 113 HTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATR 169

Query: 172 NILFNEENVAKLFDFSFSISIPEGE-THISELLSGLRAFDLARLNEDDGY---------- 220
           N L  E  V K+ DF  S +I   +        +    +        + Y          
Sbjct: 170 NCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYG 229

Query: 221 ---VVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP- 276
                +  +  + +      E+I  +  G+   +  +       +L+  C ++ P DRP 
Sbjct: 230 VVLWEIFSYGLQPYYGMAHEEVIYYVRDGNIL-ACPENCPLELYNLMRLCWSKLPADRPS 288

Query: 277 MVDVAK 282
              + +
Sbjct: 289 FCSIHR 294

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 1e-16
 Identities = 38/245 (15%), Positives = 93/245 (37%), Gaps = 28/245 (11%)

Query: 59  QERPVSVMKFD-ESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG 117
           ++  V++      ++    +  +       Q+ +  I +LIG C + +  +LV E    G
Sbjct: 35  KQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGG 93

Query: 118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE 177
            L   +        + E + +++  ++   ++  + YL     +  + RD    N+L   
Sbjct: 94  PLHKFLV------GKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVN 144

Query: 178 ENVAKLFDFSFSISIPEGETHISELLSGL-----RAFDLARLNEDDGYV----------V 222
            + AK+ DF  S ++   +++ +   +G       A +     +                
Sbjct: 145 RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWE 204

Query: 223 LLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVA 281
            L + +K +++ +  E++  +  G R      +       L+ +C      DRP  + V 
Sbjct: 205 ALSYGQKPYKKMKGPEVMAFIEQGKRM-ECPPECPPELYALMSDCWIYKWEDRPDFLTVE 263

Query: 282 KKTQA 286
           ++ +A
Sbjct: 264 QRMRA 268

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 1e-16
 Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 21/228 (9%)

Query: 65  VMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIR 124
           + K    K          +   S + H  I +L G   +     L+ EY   G++   ++
Sbjct: 39  LFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ 98

Query: 125 IHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF 184
                  +              ++ANA++Y H    + VI RD K  N+L       K+ 
Sbjct: 99  -------KLSKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIA 148

Query: 185 DFSFSISIPEGETHISELLSGLRAFDLARLNEDD------GYVVLLDHI---KKYFEEDR 235
           DF +S+  P                ++      D         VL       K  FE + 
Sbjct: 149 DFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT 208

Query: 236 LNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRPMVDVAKK 283
             E    +   + +        +    LI   +  +P  RPM+    +
Sbjct: 209 YQETYKRISRVEFTFPDFVT--EGARDLISRLLKHNPSQRPMLREVLE 254

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 2e-16
 Identities = 39/231 (16%), Positives = 82/231 (35%), Gaps = 31/231 (13%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADR 122
           V ++K + + P   D  +       Q+ +  I ++IG C E +  +LV E    G L   
Sbjct: 39  VKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWMLVMEMAELGPLNKY 97

Query: 123 IRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAK 182
           +        Q+  +   + +++   ++  + YL        + RD    N+L   ++ AK
Sbjct: 98  L-------QQNRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAK 147

Query: 183 LFDFSFSISIPEGETHIS--------------ELLSGLR---AFDLARLNEDDGYVVLLD 225
           + DF  S ++   E +                E ++  +     D+              
Sbjct: 148 ISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWE--AFS 205

Query: 226 HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP 276
           + +K +   + +E+   L  G+R         +    L+  C      +RP
Sbjct: 206 YGQKPYRGMKGSEVTAMLEKGERM-GCPAGCPREMYDLMNLCWTYDVENRP 255

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.2 bits (184), Expect = 3e-16
 Identities = 34/243 (13%), Positives = 79/243 (32%), Gaps = 29/243 (11%)

Query: 59  QERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG 117
           +E  V++         +     ++      Q  H  +  L G   ++   +++ E++  G
Sbjct: 53  REIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENG 112

Query: 118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE 177
           SL   +R +       +       + +   IA  + YL        + RD    NIL N 
Sbjct: 113 SLDSFLRQNDGQFTVIQ------LVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNS 163

Query: 178 ENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-------------GYVVLL 224
             V K+ DF  S  + +  +  +   +      +     +               Y +++
Sbjct: 164 NLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVM 223

Query: 225 DHI----KKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVD 279
             +    ++ + +    ++I+ +    R          A   L+ +C  +    RP    
Sbjct: 224 WEVMSYGERPYWDMTNQDVINAIEQDYRL-PPPMDCPSALHQLMLDCWQKDRNHRPKFGQ 282

Query: 280 VAK 282
           +  
Sbjct: 283 IVN 285

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 4e-16
 Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 24/229 (10%)

Query: 61  RPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLA 120
             V++         + +  +       ++ H  + +L     E  I I V EY++ GSL 
Sbjct: 42  TRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLL 99

Query: 121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV 180
           D ++   T +    P      + +A  IA+ +AY+        + RD + +NIL  E  V
Sbjct: 100 DFLK-GETGKYLRLP----QLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLV 151

Query: 181 AKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGY-------------VVLLDHI 227
            K+ DF  +  I + E    +       +          +               L    
Sbjct: 152 CKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKG 211

Query: 228 KKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP 276
           +  +      E++D +  G R      +  ++   L+ +C  + P +RP
Sbjct: 212 RVPYPGMVNREVLDQVERGYRM-PCPPECPESLHDLMCQCWRKEPEERP 259

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (181), Expect = 7e-16
 Identities = 37/257 (14%), Positives = 71/257 (27%), Gaps = 65/257 (25%)

Query: 81  NNIVYASQMIHRCIFKLIGCCLETQIPI----LVFEYINCGSLADRIRIHHTPQPQHEPL 136
             I     + H  I   I    +         LV +Y   GSL D +            +
Sbjct: 46  AEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN--------RYTV 97

Query: 137 LLTHRLKIAMDIANAIAYLHVGF-----PRPVIFRDFKLSNILFNEENVAKLFDFSFSIS 191
            +   +K+A+  A+ +A+LH+          +  RD K  NIL  +     + D   ++ 
Sbjct: 98  TVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157

Query: 192 IPEGETHIS-------------------------------------------ELLSGLRA 208
                  I                                            E+      
Sbjct: 158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSI 217

Query: 209 FDLARLNEDDGY-VVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFEC 267
             +    +   Y +V  D   +   +    + + P I        + + L+  A ++ EC
Sbjct: 218 GGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQ---SCEALRVMAKIMREC 274

Query: 268 VNESPVDRP-MVDVAKK 283
              +   R   + + K 
Sbjct: 275 WYANGAARLTALRIKKT 291

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 1e-15
 Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 25/225 (11%)

Query: 67  KFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH 126
               S+P   D  I  +     + HR + +L G  L   +  +V E    GSL DR+R H
Sbjct: 46  PDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPM-KMVTELAPLGSLLDRLRKH 104

Query: 127 HTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
                     LL    + A+ +A  + YL     +  I RD    N+L    ++ K+ DF
Sbjct: 105 Q------GHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDF 155

Query: 187 SFSISIPEGETH--ISELLSGLRAFDLARLNEDDGY-------------VVLLDHIKKYF 231
               ++P+ + H  + E      A+      +   +               +  + ++ +
Sbjct: 156 GLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW 215

Query: 232 EEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP 276
                ++I+  +          +   Q   +++ +C    P DRP
Sbjct: 216 IGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRP 260

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (176), Expect = 2e-15
 Identities = 48/235 (20%), Positives = 80/235 (34%), Gaps = 23/235 (9%)

Query: 61  RPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLA 120
             V++    E    + +  I       ++ H  + +L G CLE     LVFE++  G L+
Sbjct: 30  DKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLS 88

Query: 121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV 180
           D +R                 L + +D+   +AYL       VI RD    N L  E  V
Sbjct: 89  DYLRTQRGLFAAET------LLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQV 139

Query: 181 AKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGY---------VVLLDHI---K 228
            K+ DF  +  + + +   S        +    +     Y          VL+  +    
Sbjct: 140 IKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEG 199

Query: 229 KYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK 282
           K   E+R N  +   I         +        ++  C  E P DRP    + +
Sbjct: 200 KIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLR 254

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 2e-15
 Identities = 44/206 (21%), Positives = 62/206 (30%), Gaps = 24/206 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQ---------HEPLLLTHR 141
           H  I  L+G C       L  EY   G+L D +R     +              L     
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 129

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISE 201
           L  A D+A  + YL     +  I RD    NIL  E  VAK+ DF  S            
Sbjct: 130 LHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG 186

Query: 202 LLS-GLRAFDLARLNEDDGYV----------VLLDHIKKYFEEDRLNEIIDPLIMGDRSC 250
            L     A +    +                 ++      +      E+ + L  G R  
Sbjct: 187 RLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRL- 245

Query: 251 SGNQQQLQAFAHLIFECVNESPVDRP 276
                       L+ +C  E P +RP
Sbjct: 246 EKPLNCDDEVYDLMRQCWREKPYERP 271

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (177), Expect = 2e-15
 Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 11/140 (7%)

Query: 61  RPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLA 120
           + V++ + +  +    +  IN I+   +  +  I   +   L      +V EY+  GSL 
Sbjct: 46  QEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLT 105

Query: 121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV 180
           D +      + Q           +  +   A+ +LH      VI RD K  NIL   +  
Sbjct: 106 DVVTETCMDEGQ--------IAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGS 154

Query: 181 AKLFDFSFSISIPEGETHIS 200
            KL DF F   I   ++  S
Sbjct: 155 VKLTDFGFCAQITPEQSKRS 174

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 2e-15
 Identities = 38/238 (15%), Positives = 78/238 (32%), Gaps = 27/238 (11%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPI-LVFEYINCGSLAD 121
           V ++K   +            +      H  +  L+G C +   P+ ++ E+   G+L+ 
Sbjct: 48  VKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLST 107

Query: 122 RIRIHHTPQPQHE---------PLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSN 172
            +R        ++          L L H +  +  +A  + +L     R  I RD    N
Sbjct: 108 YLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARN 164

Query: 173 ILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGY------------ 220
           IL +E+NV K+ DF  +  I +   ++ +  + L    +A     D              
Sbjct: 165 ILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGV 224

Query: 221 --VVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP 276
               +       +   +++E     +                   + +C +  P  RP
Sbjct: 225 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRP 282

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 71.6 bits (175), Expect = 4e-15
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 10/108 (9%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
           H  I +L           LVF+ +  G L D +        +   L      KI   +  
Sbjct: 69  HPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT-------EKVTLSEKETRKIMRALLE 121

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
            I  LH      ++ RD K  NIL +++   KL DF FS  +  GE  
Sbjct: 122 VICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKL 166

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 5e-15
 Identities = 42/238 (17%), Positives = 81/238 (34%), Gaps = 28/238 (11%)

Query: 55  SGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEY 113
            G   + PV++ +  E+  P+     ++     + + +  + +L+G CL + + ++  + 
Sbjct: 33  EGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT-QL 91

Query: 114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNI 173
           +  G L D +R H               L   + IA  + YL     R ++ RD    N+
Sbjct: 92  MPFGCLLDYVREHKDNIGSQY------LLNWCVQIAKGMNYLE---DRRLVHRDLAARNV 142

Query: 174 LFNEENVAKLFDFSFSISIPEGETHIS-------------ELLSGLRAFDLARLNEDDGY 220
           L       K+ DF  +  +   E                 E +   R +         G 
Sbjct: 143 LVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILH-RIYTHQSDVWSYGV 201

Query: 221 VV--LLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP 276
            V  L+    K ++    +EI   L  G+R              ++ +C       RP
Sbjct: 202 TVWELMTFGSKPYDGIPASEISSILEKGERL-PQPPICTIDVYMIMVKCWMIDADSRP 258

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 6e-15
 Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 10/119 (8%)

Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
              I     + H  + K  G   E  I  L  EY + G L DRI            +   
Sbjct: 51  KKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE-------PDIGMPEP 103

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
              +    +   + YLH      +  RD K  N+L +E +  K+ DF  +         
Sbjct: 104 DAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 159

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 71.6 bits (175), Expect = 7e-15
 Identities = 19/142 (13%), Positives = 48/142 (33%), Gaps = 11/142 (7%)

Query: 61  RPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLA 120
              +            +     I   S + H  +  L     +    ++++E+++ G L 
Sbjct: 52  NNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELF 111

Query: 121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN--EE 178
           +++        +H  +     ++    +   + ++H       +  D K  NI+F     
Sbjct: 112 EKV------ADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRS 162

Query: 179 NVAKLFDFSFSISIPEGETHIS 200
           N  KL DF  +  +   ++   
Sbjct: 163 NELKLIDFGLTAHLDPKQSVKV 184

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 70.1 bits (171), Expect = 2e-14
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 11/140 (7%)

Query: 61  RPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLA 120
           R       +   P       N I   +Q+ H  +  L     +    +L+ E+++ G L 
Sbjct: 55  RVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELF 114

Query: 121 DRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF--NEE 178
           DRI        + E       +         + ++H      ++  D K  NI+    + 
Sbjct: 115 DRIAAEDYKMSEAE------VINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKA 165

Query: 179 NVAKLFDFSFSISIPEGETH 198
           +  K+ DF  +  +   E  
Sbjct: 166 SSVKIIDFGLATKLNPDEIV 185

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (171), Expect = 2e-14
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 10/114 (8%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           S      I  +            + + +N G L   +        QH           A 
Sbjct: 62  STGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS-------QHGVFSEADMRFYAA 114

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHIS 200
           +I   + ++H    R V++RD K +NIL +E    ++ D   +    + + H S
Sbjct: 115 EIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 165

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 4e-14
 Identities = 34/244 (13%), Positives = 84/244 (34%), Gaps = 29/244 (11%)

Query: 59  QERPVSVMKFD-ESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ-IPILVFEYINC 116
           ++   +V   +  +        +   +      H  +  L+G CL ++  P++V  Y+  
Sbjct: 54  KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKH 113

Query: 117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN 176
           G L + IR         +       +   + +A  + +L     +  + RD    N + +
Sbjct: 114 GDLRNFIRNETHNPTVKD------LIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLD 164

Query: 177 EENVAKLFDFSFSISIPEGETHISELLSGLR------AFDLARLNEDD--------GYVV 222
           E+   K+ DF  +  + + E       +G +      A +  +  +          G ++
Sbjct: 165 EKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLL 224

Query: 223 --LLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVD 279
             L+      + +    +I   L+ G R     +        ++ +C +     RP   +
Sbjct: 225 WELMTRGAPPYPDVNTFDITVYLLQGRRLLQP-EYCPDPLYEVMLKCWHPKAEMRPSFSE 283

Query: 280 VAKK 283
           +  +
Sbjct: 284 LVSR 287

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 7e-14
 Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 36/244 (14%)

Query: 59  QERPVSVMKFDE-SKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG 117
               V++      +     +  +   +   Q  H  I KLIG   E  + I + E    G
Sbjct: 34  PALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI-IMELCTLG 92

Query: 118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE 177
            L   +++            L   +  A  ++ A+AYL     +  + RD    N+L + 
Sbjct: 93  ELRSFLQVRKYSLD------LASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSS 143

Query: 178 ENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGYVV-------------LL 224
            +  KL DF  S  + +   + +        +          +               +L
Sbjct: 144 NDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 203

Query: 225 DHIKKYFEEDRLNEIIDPLIMGDR-----SCSGNQQQLQAFAHLIFECVNESPVDRP-MV 278
            H  K F+  + N++I  +  G+R     +C            L+ +C    P  RP   
Sbjct: 204 MHGVKPFQGVKNNDVIGRIENGERLPMPPNCP------PTLYSLMTKCWAYDPSRRPRFT 257

Query: 279 DVAK 282
           ++  
Sbjct: 258 ELKA 261

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (165), Expect = 8e-14
 Identities = 27/249 (10%), Positives = 62/249 (24%), Gaps = 64/249 (25%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLET----QIPILVFEYINCGS 118
              ++  +                  + H  I +       T    +  +LV E +  G+
Sbjct: 39  WCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGT 98

Query: 119 LADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE 178
           L   ++       + + + +         I   + +LH   P P+I RD K  NI     
Sbjct: 99  LKTYLK-------RFKVMKIKVLRSWCRQILKGLQFLHTRTP-PIIHRDLKCDNIFITGP 150

Query: 179 N-VAKLFDFSFSISIPEGETH------------------------------ISELLSGLR 207
               K+ D   +                                       + E+ +   
Sbjct: 151 TGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEY 210

Query: 208 AFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFEC 267
            +      E      +   +    +    +++  P                    +I  C
Sbjct: 211 PYS-----ECQNAAQIYRRVTSGVKPASFDKVAIP----------------EVKEIIEGC 249

Query: 268 VNESPVDRP 276
           + ++  +R 
Sbjct: 250 IRQNKDERY 258

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 9e-14
 Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 28/216 (12%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQH---------EPLLLTHR 141
           H+ I  L+G C +     ++ EY + G+L + ++    P  ++         E L     
Sbjct: 78  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 137

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISE 201
           +  A  +A  + YL     +  I RD    N+L  E+NV K+ DF  +  I   + +   
Sbjct: 138 VSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 194

Query: 202 LLSGLRAFDLARLNEDDGYV--------------VLLDHIKKYFEEDRLNEIIDPLIMGD 247
               L    +A     D                  +       +    + E+   L  G 
Sbjct: 195 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGH 254

Query: 248 RSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK 282
           R              ++ +C +  P  RP    + +
Sbjct: 255 RM-DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE 289

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 3e-13
 Identities = 39/242 (16%), Positives = 87/242 (35%), Gaps = 23/242 (9%)

Query: 60  ERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGS 118
           E  V++   +E+   R     +N      +     + +L+G   + Q  +++ E +  G 
Sbjct: 50  ETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGD 109

Query: 119 LADRIRIHH---TPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF 175
           L   +R         P   P  L+  +++A +IA+ +AYL+       + RD    N + 
Sbjct: 110 LKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMV 166

Query: 176 NEENVAKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDDGYV-------------- 221
            E+   K+ DF  +  I E + +       L    ++  +  DG                
Sbjct: 167 AEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLW 226

Query: 222 VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDV 280
            +    ++ ++     +++  ++ G                L+  C   +P  RP  +++
Sbjct: 227 EIATLAEQPYQGLSNEQVLRFVMEGGLL-DKPDNCPDMLFELMRMCWQYNPKMRPSFLEI 285

Query: 281 AK 282
             
Sbjct: 286 IS 287

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (160), Expect = 4e-13
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 87  SQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
           S++ H    KL     + +       Y   G L   I        +      T       
Sbjct: 63  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI-------RKIGSFDETCTRFYTA 115

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
           +I +A+ YLH    + +I RD K  NIL NE+   ++ DF  +  +      
Sbjct: 116 EIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 164

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 1e-12
 Identities = 39/256 (15%), Positives = 80/256 (31%), Gaps = 28/256 (10%)

Query: 43  KLYEGFFQNRPISGFFQERPVSVMKFD-ESKPRTYDCCINNIVYASQMIHRCIFKLIGCC 101
           ++Y+G  +    S   +E PV++         +     +       Q  H  I +L G  
Sbjct: 22  EVYKGMLKT---SSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVI 78

Query: 102 LETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPR 161
            + +  +++ EY+  G+      +    + +     +   + +   IA  + YL      
Sbjct: 79  SKYKPMMIITEYMENGA------LDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NM 129

Query: 162 PVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHIS--------------ELLSGLR 207
             + RD    NIL N   V K+ DF  S  + +                    E +S  +
Sbjct: 130 NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRK 189

Query: 208 AFDLARLNEDDGYVVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLIFEC 267
               + +      +  +    +    +  N  +   I              A   L+ +C
Sbjct: 190 FTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQC 249

Query: 268 VNESPVDRP-MVDVAK 282
             +    RP   D+  
Sbjct: 250 WQQERARRPKFADIVS 265

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 1e-12
 Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query: 65  VMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIR 124
           + KF + K          I   +   HR I  L       +  +++FE+I+   + +RI 
Sbjct: 34  MAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERIN 93

Query: 125 IHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF--NEENVAK 182
                  + E       +     +  A+ +LH      +   D +  NI++     +  K
Sbjct: 94  TSAFELNERE------IVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIK 144

Query: 183 LFDFSFSISIPEGETH 198
           + +F  +  +  G+  
Sbjct: 145 IIEFGQARQLKPGDNF 160

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 8e-12
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 83  IVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRL 142
            V +    H  +  +       +    V EY+N G L   I+             L+   
Sbjct: 54  RVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQ-------SCHKFDLSRAT 106

Query: 143 KIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHIS 200
             A +I   + +LH    + +++RD KL NIL +++   K+ DF        G+   +
Sbjct: 107 FYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTN 161

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (148), Expect = 2e-11
 Identities = 37/220 (16%), Positives = 67/220 (30%), Gaps = 39/220 (17%)

Query: 91  HRCIFKLIGCC----LETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAM 146
              I +++          +  ++V E ++ G L  RI+         +        +I  
Sbjct: 64  CPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRG-----DQAFTEREASEIMK 118

Query: 147 DIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN---VAKLFDFSFSISIPEGETHIS--- 200
            I  AI YLH      +  RD K  N+L+  +    + KL DF F+       +  +   
Sbjct: 119 SIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY 175

Query: 201 -------ELLSGLR---AFDLARLNEDDGYVVL-LDHIKKYFEEDRLNEIIDPLIMGDRS 249
                  E+L   +   + D+  L    G ++  L      F  +    I   +    R 
Sbjct: 176 TPYYVAPEVLGPEKYDKSCDMWSL----GVIMYILLCGYPPFYSNHGLAISPGMKTRIRM 231

Query: 250 CSGNQQQL------QAFAHLIFECVNESPVDRPMVDVAKK 283
                         +    LI   +   P  R  +     
Sbjct: 232 GQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 271

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.0 bits (145), Expect = 5e-11
 Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 8/138 (5%)

Query: 61  RPVSVMKFDESKPRTYDCCINN-IVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSL 119
           + V++    +      +  + N I    ++ H  I  L           L+ + ++ G L
Sbjct: 35  KLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGEL 94

Query: 120 ADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
            DRI        +          ++   + +A+ YLH         +   L     +E++
Sbjct: 95  FDRIV-------EKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDS 147

Query: 180 VAKLFDFSFSISIPEGET 197
              + DF  S     G  
Sbjct: 148 KIMISDFGLSKMEDPGSV 165

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 6e-11
 Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 10/136 (7%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADR 122
           + +    E+K       +  I    ++ H  I  L+          LVF+++        
Sbjct: 31  IKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVII 90

Query: 123 IRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAK 182
                   P H            +     + YLH      ++ RD K +N+L +E  V K
Sbjct: 91  KDNSLVLTPSH-------IKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLK 140

Query: 183 LFDFSFSISIPEGETH 198
           L DF  + S       
Sbjct: 141 LADFGLAKSFGSPNRA 156

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.8 bits (139), Expect = 3e-10
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 10/133 (7%)

Query: 67  KFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH 126
           K    + +  +   +  +  S + H  I ++ G   + Q   ++ +YI  G L   +R  
Sbjct: 39  KEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS 98

Query: 127 HTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
                             A ++  A+ YLH    + +I+RD K  NIL ++    K+ DF
Sbjct: 99  QRFPNPV-------AKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDF 148

Query: 187 SFSISIPEGETHI 199
            F+  +P+    +
Sbjct: 149 GFAKYVPDVTYTL 161

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 56.7 bits (136), Expect = 4e-10
 Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 15/145 (10%)

Query: 63  VSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLET----QIPILVFEYINCG 117
           V V++ D ++ P  Y         A+ + H  I  +            +P +V EY++  
Sbjct: 37  VKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGV 96

Query: 118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE 177
           +L D +           P+     +++  D   A+ + H      +I RD K +NI+ + 
Sbjct: 97  TLRDIVH-------TEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISA 146

Query: 178 ENVAKLFDFSFSISIPEGETHISEL 202
            N  K+ DF  + +I +    +++ 
Sbjct: 147 TNAVKVMDFGIARAIADSGNSVTQT 171

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 56.4 bits (135), Expect = 7e-10
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 10/136 (7%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADR 122
           +  ++ ++         I  I    ++ H  I KL       +  +LVFE+++       
Sbjct: 31  LKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLL 90

Query: 123 IRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAK 182
                        L         + + N IAY H    R V+ RD K  N+L N E   K
Sbjct: 91  DV-------CEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELK 140

Query: 183 LFDFSFSISIPEGETH 198
           + DF  + +       
Sbjct: 141 IADFGLARAFGIPVRK 156

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 16/118 (13%)

Query: 84  VYASQMIHRCIFKLIGCCLE--TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR 141
           +  +      I  L     +  ++ P LVFE++N        +           L     
Sbjct: 82  ILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ----------TLTDYDI 131

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFSISIPEGETH 198
                +I  A+ Y H      ++ RD K  N++ + E+   +L D+  +     G+ +
Sbjct: 132 RFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY 186

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 32/202 (15%), Positives = 57/202 (28%), Gaps = 24/202 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
              + +L+         +L+ E                   +               +  
Sbjct: 68  FSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEEL------ARSFFWQVLE 121

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFSISIPEGETHISELLSGLRAF 209
           A+ + H      V+ RD K  NIL +      KL DF     + +      +        
Sbjct: 122 AVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPP 178

Query: 210 DLARLNEDDGY--------VVLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFA 261
           +  R +   G         ++L D +      +   EII   +   +  S          
Sbjct: 179 EWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVS------SECQ 232

Query: 262 HLIFECVNESPVDRPMVDVAKK 283
           HLI  C+   P DRP  +  + 
Sbjct: 233 HLIRWCLALRPSDRPTFEEIQN 254

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 4e-09
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 14/121 (11%)

Query: 87  SQMIHRCIFKLIGCCLETQIP------ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTH 140
            ++ H  I +L      +          LV +Y+         R+        + L + +
Sbjct: 68  RKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVY----RVARHYSRAKQTLPVIY 123

Query: 141 RLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFSISIPEGETHI 199
                  +  ++AY+H      +  RD K  N+L + +  V KL DF  +  +  GE ++
Sbjct: 124 VKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNV 180

Query: 200 S 200
           S
Sbjct: 181 S 181

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 7e-09
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 10/138 (7%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADR 122
           +  ++ D+         +  I    ++ H+ I +L       +   LVFE+ +       
Sbjct: 32  LKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYF 91

Query: 123 IRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAK 182
              +    P+               +   + + H    R V+ RD K  N+L N     K
Sbjct: 92  DSCNGDLDPEI-------VKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELK 141

Query: 183 LFDFSFSISIPEGETHIS 200
           L +F  + +        S
Sbjct: 142 LANFGLARAFGIPVRCYS 159

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 7e-09
 Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 14/134 (10%)

Query: 69  DESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHT 128
              +  + +     +    ++ H  +  L          IL+ E +  G L D       
Sbjct: 50  SSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFD------- 102

Query: 129 PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVA----KLF 184
              + E L      +    I N + YLH      +   D K  NI+  + NV     K+ 
Sbjct: 103 FLAEKESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKII 159

Query: 185 DFSFSISIPEGETH 198
           DF  +  I  G   
Sbjct: 160 DFGLAHKIDFGNEF 173

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 8e-09
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 16/145 (11%)

Query: 61  RPVSVMKFDESKPRTY-DCCINNIVYASQMIHRCIFKLIGCC----LETQIPILVFEYIN 115
             V++ K    + +TY    +  I    +  H  I  +        +E    + +  ++ 
Sbjct: 34  VRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLM 93

Query: 116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILF 175
              L   ++         + L   H       I   + Y+H      V+ RD K SN+L 
Sbjct: 94  GADLYKLLK--------TQHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLL 142

Query: 176 NEENVAKLFDFSFSISIPEGETHIS 200
           N     K+ DF  +        H  
Sbjct: 143 NTTCDLKICDFGLARVADPDHDHTG 167

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 1e-08
 Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 9/138 (6%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADR 122
           +  ++ D          I  I    ++ H  I KL+          LVFE+++       
Sbjct: 32  LKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFM 91

Query: 123 IRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAK 182
                T  P                +   +A+ H      V+ RD K  N+L N E   K
Sbjct: 92  DASALTGIPLPL------IKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIK 142

Query: 183 LFDFSFSISIPEGETHIS 200
           L DF  + +        +
Sbjct: 143 LADFGLARAFGVPVRTYT 160

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 1e-08
 Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 4/138 (2%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADR 122
           V V   +E  P +    +  + +     H  + +L   C  ++        +    +   
Sbjct: 41  VRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQD 100

Query: 123 IRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAK 182
           +  +    P+   +       +   +   + +LH      V+ RD K  NIL       K
Sbjct: 101 LTTYLDKVPEP-GVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIK 156

Query: 183 LFDFSFSISIPEGETHIS 200
           L DF  +          S
Sbjct: 157 LADFGLARIYSFQMALTS 174

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (124), Expect = 2e-08
 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 10/133 (7%)

Query: 67  KFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIH 126
           K    K +  +  +N       +    + KL     +     +V EY+  G +   +   
Sbjct: 76  KQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL--- 132

Query: 127 HTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF 186
                +       H    A  I     YLH      +I+RD K  N+L +++   ++ DF
Sbjct: 133 ----RRIGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDF 185

Query: 187 SFSISIPEGETHI 199
            F+  +      +
Sbjct: 186 GFAKRVKGRTWTL 198

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 2e-08
 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 10/119 (8%)

Query: 80  INNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLT 139
           +          H  +  L            V EY N G L   +        +       
Sbjct: 53  VTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-------RERVFTEE 105

Query: 140 HRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETH 198
                  +I +A+ YLH    R V++RD KL N++ +++   K+ DF            
Sbjct: 106 RARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT 161

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 8e-08
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 18/144 (12%)

Query: 63  VSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPI--------LVFEYI 114
           +  +  +  K       +  I     + H  +  LI  C     P         LVF++ 
Sbjct: 40  LKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFC 99

Query: 115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNIL 174
                                  L+   ++   + N    L+      ++ RD K +N+L
Sbjct: 100 EHDLAGLLSN-------VLVKFTLSEIKRVMQMLLNG---LYYIHRNKILHRDMKAANVL 149

Query: 175 FNEENVAKLFDFSFSISIPEGETH 198
              + V KL DF  + +    +  
Sbjct: 150 ITRDGVLKLADFGLARAFSLAKNS 173

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 28/119 (23%), Positives = 40/119 (33%), Gaps = 10/119 (8%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
              +  L           L+ +YIN G L   +        Q E            +I  
Sbjct: 88  SPFLVTLHYAFQTETKLHLILDYINGGELFTHLS-------QRERFTEHEVQIYVGEIVL 140

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGETHISELLSGLRAF 209
           A+ +LH      +I+RD KL NIL +      L DF  S      ET  +    G   +
Sbjct: 141 ALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEY 196

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.6 bits (107), Expect = 3e-06
 Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 15/113 (13%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
              I  +     E    +LV + +                       +      A  +  
Sbjct: 60  CTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDL-------CGRKFSVKTVAMAAKQMLA 112

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNE-----ENVAKLFDFSFSISIPEGETH 198
            +  +H    + +++RD K  N L         N+  + DF       +  T 
Sbjct: 113 RVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTK 162

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 13/111 (11%)

Query: 91  HRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIAN 150
              I  +  C  E    ++V E +                       L   L +A  + +
Sbjct: 62  GVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNF-------CSRKFSLKTVLLLADQMIS 114

Query: 151 AIAYLHVGFPRPVIFRDFKLSNILFNEENVAKL---FDFSFSISIPEGETH 198
            I Y+H    +  I RD K  N L        L    DF  +    +  TH
Sbjct: 115 RIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH 162

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 82  NIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHR 141
           +      M    I KL+          +    +      + + +    + +  PL   + 
Sbjct: 70  DNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPL--IYV 127

Query: 142 LKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN 179
            +I+  +   + Y+H      +I  D K  N+L    +
Sbjct: 128 KQISKQLLLGLDYMH--RRCGIIHTDIKPENVLMEIVD 163

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 22/109 (20%)

Query: 88  QMIHRCIFKLIGCCLETQI----PILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLK 143
           +   R + KL G  +          ++ E I+                +   + + +  +
Sbjct: 62  RNEFRALQKLQGLAVPKVYAWEGNAVLMELIDAK--------------ELYRVRVENPDE 107

Query: 144 IAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI 192
           +   I   +A  +    R ++  D    N+L +EE +  + DF  S+ +
Sbjct: 108 VLDMILEEVAKFY---HRGIVHGDLSQYNVLVSEEGI-WIIDFPQSVEV 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	292
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.95
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.86
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.61
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	98.1
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.51
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	97.08
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.23
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	95.9
d1cjaa_	342	Actin-fragmin kinase, catalytic domain {Physarum p	80.51

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-48  Score=324.12  Aligned_cols=234  Identities=21%  Similarity=0.296  Sum_probs=181.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||+||+|.+.        +++.||||.++... ...+++.+|+.++++++||||++++|++..++..++||||+++|
T Consensus        15 ~G~fg~Vy~~~~~--------~~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g   85 (263)
T d1sm2a_          15 SGQFGLVHLGYWL--------NKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHG   85 (263)
T ss_dssp             CCSSCCEEEEEET--------TTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred             eCCCeEEEEEEEC--------CCCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCC
Confidence            8999999999997        88899999997653 34577999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.      .....+++..++.++.|+|.||.|||   +.+|+||||||+|||+++++.+||+|||+|+.......
T Consensus        86 ~L~~~l~------~~~~~~~~~~~~~i~~qia~gl~~lH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~  156 (263)
T d1sm2a_          86 CLSDYLR------TQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY  156 (263)
T ss_dssp             BHHHHHH------TTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCTTCSGGGEEECGGGCEEECSCC----------
T ss_pred             cHHHHhh------ccccCCCHHHHHHHHHHHHHHHHhhh---ccceeecccchhheeecCCCCeEecccchheeccCCCc
Confidence            9999983      34567899999999999999999999   89999999999999999999999999999988766555


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......||..|++||+....           |++  ||+ ++.+ ++......+++.....+.+.. .+..+++.+.+|
T Consensus       157 ~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~-~~~~~~~~~~~~~i~~~~~~~-~p~~~~~~l~~l  234 (263)
T d1sm2a_         157 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKI-PYENRSNSEVVEDISTGFRLY-KPRLASTHVYQI  234 (263)
T ss_dssp             --------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCC-TTCSCCHHHHHHHHHHTCCCC-CCTTSCHHHHHH
T ss_pred             eeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCC-CCCCCCHHHHHHHHHhcCCCC-CccccCHHHHHH
Confidence            445556789999888765533           999  888 4443 334334344443333333222 224677899999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      +.+||+.||++|| ++||++.|+++.+++
T Consensus       235 i~~cl~~~p~~Rps~~~il~~L~~i~esg  263 (263)
T d1sm2a_         235 MNHCWKERPEDRPAFSRLLRQLAEIAESG  263 (263)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             HHHHccCCHhHCcCHHHHHHHHHHHHhCC
Confidence            9999999999999 999999999998875

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-47  Score=320.04  Aligned_cols=235  Identities=17%  Similarity=0.251  Sum_probs=191.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||+||+|.+..       +++.||||.++... ...+++.+|+.+|++++||||++++|++..++..++||||+++|
T Consensus        27 ~G~fg~Vy~a~~~~-------~~~~vAvK~i~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g   98 (287)
T d1opja_          27 GGQYGEVYEGVWKK-------YSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYG   98 (287)
T ss_dssp             TTTTSSEEEEEEGG-------GTEEEEEEECCTTC-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred             eCCCeEEEEEEECC-------CCeEEEEEEECCcc-chHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecccCc
Confidence            99999999999875       78999999997653 34578999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...     ....+++..+..++.|++.||.|||   +.+|+||||||+|||+++++.+||+|||+|+....+..
T Consensus        99 ~l~~~l~~~-----~~~~~~~~~~~~i~~qi~~gL~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~  170 (287)
T d1opja_          99 NLLDYLREC-----NRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY  170 (287)
T ss_dssp             BHHHHHHHS-----CTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSS
T ss_pred             chHHHhhhc-----cccchHHHHHHHHHHHHHHHHHHHH---HCCcccCccccCeEEECCCCcEEEccccceeecCCCCc
Confidence            999998432     3567999999999999999999999   89999999999999999999999999999998766555


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......|++.|++|++....           |++  ||+ +.. |++.......+.+.. .....++.+..+++.+.+|
T Consensus       171 ~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~-p~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~l~~l  248 (287)
T d1opja_         171 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGM-SPYPGIDLSQVYELL-EKDYRMERPEGCPEKVYEL  248 (287)
T ss_dssp             EEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSC-CSSTTCCHHHHHHHH-HTTCCCCCCTTCCHHHHHH
T ss_pred             eeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCC-CCCCcchHHHHHHHH-hcCCCCCCCccchHHHHHH
Confidence            555556688889888764322           998  888 444 333333333333322 2222222234678899999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +.+||+.||++|| +.||++.|+.+.+.
T Consensus       249 i~~cl~~dP~~Rps~~ei~~~L~~~~~~  276 (287)
T d1opja_         249 MRACWQWNPSDRPSFAEIHQAFETMFQE  276 (287)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHTTSS
T ss_pred             HHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence            9999999999999 99999999987654

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-46  Score=318.55  Aligned_cols=235  Identities=15%  Similarity=0.221  Sum_probs=176.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCe---EEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQER---PVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~---~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||+||+|.+..       +++   .||||.+... .....+.|.+|+.+|++++|||||+++|++..++..++||||
T Consensus        36 ~G~fg~Vy~~~~~~-------~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~Ey  108 (299)
T d1jpaa_          36 AGEFGEVCSGHLKL-------PGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEF  108 (299)
T ss_dssp             ECSSSEEEEEEECC----------CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             eCCCeEEEEEEEeC-------CCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEe
Confidence            99999999999853       433   5899998754 334456799999999999999999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++.      .....+++..++.++.||+.||.|||   +.+++||||||+|||++.++.+||+|||+|+.+.
T Consensus       109 ~~~g~L~~~~~------~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~  179 (299)
T d1jpaa_         109 MENGSLDSFLR------QNDGQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLE  179 (299)
T ss_dssp             CTTEEHHHHHH------TTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred             cCCCcceeeec------cccCCCCHHHHHHHHHHHHHHHHHHh---hCCCccCccccceEEECCCCcEEECCcccceEcc
Confidence            99999999884      23457999999999999999999999   8999999999999999999999999999998775


Q ss_pred             CCCccc----hhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchH
Q 044211          194 EGETHI----SELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQ  255 (292)
Q Consensus       194 ~~~~~~----~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (292)
                      ......    .....||+.|++|+.....           ||+  ||+ ....|+... ...+++.....+.++ +.+.+
T Consensus       180 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~-~~~~~~~~i~~~~~~-~~~~~  257 (299)
T d1jpaa_         180 DDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDM-TNQDVINAIEQDYRL-PPPMD  257 (299)
T ss_dssp             ----------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-CHHHHHHHHHTTCCC-CCCTT
T ss_pred             CCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCC-CHHHHHHHHHcCCCC-CCCcc
Confidence            433221    1224578889888765422           999  888 445555443 233333333333222 22347


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ++..+.+|+.+||+.||++|| +.||++.|+++.++
T Consensus       258 ~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~  293 (299)
T d1jpaa_         258 CPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRN  293 (299)
T ss_dssp             CCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcC
Confidence            888999999999999999999 99999999997654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-46  Score=314.60  Aligned_cols=234  Identities=19%  Similarity=0.266  Sum_probs=189.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        +++.||||.++... ...+.+.+|+.++++++|||||+++|++.. +..++||||+++|
T Consensus        23 ~G~fg~Vy~~~~~--------~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~Ey~~~g   92 (272)
T d1qpca_          23 AGQFGEVWMGYYN--------GHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENG   92 (272)
T ss_dssp             EETTEEEEEEEET--------TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECCTTC
T ss_pred             cCCCcEEEEEEEC--------CCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCeEEEEEeCCCC
Confidence            8999999999986        78899999997653 345779999999999999999999998754 5679999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++...     ....+++..++.|+.||+.||.|||   ..+|+||||||+|||+++++.+||+|||+|+....+..
T Consensus        93 ~L~~~~~~~-----~~~~l~~~~~~~i~~qi~~gl~~lH---~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~  164 (272)
T d1qpca_          93 SLVDFLKTP-----SGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY  164 (272)
T ss_dssp             BHHHHTTSH-----HHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE
T ss_pred             cHHHHHhhc-----CCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccchhheeeecccceeeccccceEEccCCcc
Confidence            999988321     2345899999999999999999999   89999999999999999999999999999998876655


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......||+.|++||+....           |++  ||+ ++.++ +......+.+.....+.++. .+..+++.+.+|
T Consensus       165 ~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~-~~~~~~~~~~~~i~~~~~~~-~p~~~~~~l~~l  242 (272)
T d1qpca_         165 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMV-RPDNCPEELYQL  242 (272)
T ss_dssp             ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCS-STTCCHHHHHHHHHTTCCCC-CCTTCCHHHHHH
T ss_pred             ccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCC-CCCCCHHHHHHHHHhcCCCC-CcccChHHHHHH
Confidence            555567789999888765432           998  888 44433 33333333333333333222 224678899999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      +.+||+.||++|| +.+|++.|+++-.++
T Consensus       243 i~~cl~~~P~~Rpt~~ei~~~L~~~ftst  271 (272)
T d1qpca_         243 MRLCWKERPEDRPTFDYLRSVLEDFFTAT  271 (272)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCCHhHCcCHHHHHHHhhhhhhcC
Confidence            9999999999999 999999999976654

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-45  Score=308.77  Aligned_cols=234  Identities=21%  Similarity=0.259  Sum_probs=179.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+|++.         + .||||.++..  .....+.|.+|+.++++++||||++++|++.. +.+++||||++
T Consensus        18 ~G~fg~Vy~~~~~---------~-~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~Ey~~   86 (276)
T d1uwha_          18 SGSFGTVYKGKWH---------G-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQWCE   86 (276)
T ss_dssp             ECSSCEEEEEESS---------S-EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCC
T ss_pred             eCCCcEEEEEEEC---------C-EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEEecCC
Confidence            9999999999874         3 4999998653  34556789999999999999999999998754 56899999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++.      .....+++..++.++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+.....
T Consensus        87 ~g~L~~~l~------~~~~~~~~~~~~~i~~qi~~gl~yLH---~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~  157 (276)
T d1uwha_          87 GSSLYHHLH------IIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRW  157 (276)
T ss_dssp             EEEHHHHHH------TSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTSSEEECCCCCSCC----
T ss_pred             CCCHHHHHh------hccCCCCHHHHHHHHHHHHHHHHHHh---cCCEeccccCHHHEEEcCCCCEEEccccceeecccc
Confidence            999999993      23456999999999999999999999   899999999999999999999999999999876543


Q ss_pred             C-ccchhhhhcccccccccccC---------CC-----CeE--EEccchhhhhhccchhhhcccccccCCCC---CCchH
Q 044211          196 E-THISELLSGLRAFDLARLNE---------DD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSC---SGNQQ  255 (292)
Q Consensus       196 ~-~~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  255 (292)
                      . ........||+.|++||+..         ++     ||+  ||+.+..|+...............+..++   ..+..
T Consensus       158 ~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~  237 (276)
T d1uwha_         158 SGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSN  237 (276)
T ss_dssp             --------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTT
T ss_pred             CCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhcccc
Confidence            2 22344567999999998642         12     999  99933345544332222222111111111   11236


Q ss_pred             HHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          256 QLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       256 ~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      +++.+.+|+.+||+.||++|| +.||++.|+.+.++.
T Consensus       238 ~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~~  274 (276)
T d1uwha_         238 CPKAMKRLMAECLKKKRDERPLFPQILASIELLARSL  274 (276)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHcC
Confidence            678999999999999999999 999999999998764

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-46  Score=307.07  Aligned_cols=230  Identities=17%  Similarity=0.228  Sum_probs=189.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||+||+|+++        +++.||||.++.... ..+.+.+|+.++++++||||++++|++..++.+++||||+++|
T Consensus        14 ~G~fg~Vy~~~~~--------~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g   84 (258)
T d1k2pa_          14 TGQFGVVKYGKWR--------GQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANG   84 (258)
T ss_dssp             EETTEEEEEEEET--------TTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTE
T ss_pred             cCCCeEEEEEEEC--------CCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCC
Confidence            8999999999996        889999999986533 4578999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.      .....+++..+.+++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++..+.....
T Consensus        85 ~l~~~~~------~~~~~~~~~~~~~i~~qi~~gl~~LH---~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~  155 (258)
T d1k2pa_          85 CLLNYLR------EMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY  155 (258)
T ss_dssp             EHHHHHH------SGGGCCCHHHHHHHHHHHHHHHHHHH---HTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSC
T ss_pred             cHHHhhh------ccccCCcHHHHHHHHHHHHHHHHHHh---hcCcccccccceeEEEcCCCcEEECcchhheeccCCCc
Confidence            9999973      33567889999999999999999999   89999999999999999999999999999987766555


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEcc-chhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLLD-HIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......||+.|++||+....           |++  ||+. ...|+.. ....++......+.+ .+.+..+++.+.+|
T Consensus       156 ~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~-~~~~~~~~~i~~~~~-~~~p~~~~~~l~~l  233 (258)
T d1k2pa_         156 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYER-FTNSETAEHIAQGLR-LYRPHLASEKVYTI  233 (258)
T ss_dssp             CCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT-SCHHHHHHHHHTTCC-CCCCTTCCHHHHHH
T ss_pred             eeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCC-CCHHHHHHHHHhCCC-CCCcccccHHHHHH
Confidence            555556789999888775422           998  8883 4444433 233344333333332 23335778899999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +.+||+.||++|| +.+|++.|.++
T Consensus       234 i~~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         234 MYSCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             HHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             HHHHccCCHhHCcCHHHHHHHhhCC
Confidence            9999999999999 99999998753

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-45  Score=309.79  Aligned_cols=226  Identities=18%  Similarity=0.266  Sum_probs=184.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||+||+|.+..       +|+.||||.++.......+.+.+|+.++++++||||+++++++..++.+++||||+++|
T Consensus        30 ~G~fg~Vy~a~~~~-------~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg  102 (293)
T d1yhwa1          30 QGASGTVYTAMDVA-------TGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGG  102 (293)
T ss_dssp             CSSSCEEEEEEBTT-------TCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTC
T ss_pred             cCcCcEEEEEEECC-------CCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCC
Confidence            99999999999875       89999999997654455678999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.        ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+|+.+..+..
T Consensus       103 ~L~~~~~--------~~~l~~~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~  171 (293)
T d1yhwa1         103 SLTDVVT--------ETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  171 (293)
T ss_dssp             BHHHHHH--------HSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             cHHHHhh--------ccCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCcHHHeEECCCCcEeeccchhheeeccccc
Confidence            9999883        346899999999999999999999   89999999999999999999999999999987754332


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHLI  264 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  264 (292)
                       ......||+.|++||+....           ||+  +|+.+..||...............+.+....+...++.+.+||
T Consensus       172 -~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li  250 (293)
T d1yhwa1         172 -KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFL  250 (293)
T ss_dssp             -CBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHH
T ss_pred             -cccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHH
Confidence             23456799999888866543           999  8883344554433332222222222233333356788999999


Q ss_pred             hHhcCCCCCCCC-HHHHHH
Q 044211          265 FECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       265 ~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+||+.||++|| +.|+++
T Consensus       251 ~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         251 NRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             HHHTCSSTTTSCCHHHHTT
T ss_pred             HHHccCChhHCcCHHHHhc
Confidence            999999999999 999875

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-46  Score=308.85  Aligned_cols=227  Identities=19%  Similarity=0.212  Sum_probs=179.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||+||+|.+..       +++.||||.++... ....+.+.+|+.++++++||||+++++++..++..++||||+++
T Consensus        15 ~G~fg~V~~~~~~~-------~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~g   87 (271)
T d1nvra_          15 EGAYGEVQLAVNRV-------TEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSG   87 (271)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             cCcCeEEEEEEECC-------CCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCC
Confidence            89999999999875       89999999987543 23345689999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++.       ....+++..+..++.|++.||.|||   +.+|+||||||+|||+++++.+||+|||+|+.+..+.
T Consensus        88 g~L~~~l~-------~~~~l~e~~~~~i~~qi~~al~ylH---~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~  157 (271)
T d1nvra_          88 GELFDRIE-------PDIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNN  157 (271)
T ss_dssp             EEGGGGSB-------TTTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred             CcHHHHHh-------cCCCCCHHHHHHHHHHHHHHHHHHH---HcCCccCcccHHHEEECCCCCEEEccchhheeeccCC
Confidence            99999992       4567999999999999999999999   8999999999999999999999999999998775433


Q ss_pred             -ccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 -THISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 -~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                       ........||+.|++||+....            ||+  ||+ |+. |+..........................++.+
T Consensus       158 ~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  236 (271)
T d1nvra_         158 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGEL-PWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAP  236 (271)
T ss_dssp             EECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSC-SCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHH
T ss_pred             ccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCC-CCCCCChHHHHHHHHhcCCCCCCccccCCHHH
Confidence             2223456899999999865332            999  888 644 43332221111111112222222224567789


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+|+.+||+.||++|| +.|+++
T Consensus       237 ~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         237 LALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             HHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             HHHHHHHcCCChhHCcCHHHHhc
Confidence            9999999999999999 999876

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-45  Score=307.78  Aligned_cols=239  Identities=18%  Similarity=0.230  Sum_probs=180.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.++.   .+......||||.++.... .....|.+|+.++++++|||||+++|++...+..++||||+.+
T Consensus        17 ~G~fG~Vy~~~~~~---~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~v~e~~~~   93 (283)
T d1mqba_          17 AGEFGEVYKGMLKT---SSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMEN   93 (283)
T ss_dssp             ECSSSEEEEEEEEC------CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred             eCCCeEEEEEEEeC---CCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEEEEEeccc
Confidence            89999999999852   0000124799999976433 3445789999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |++.+++.      .....+++..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+|+....+.
T Consensus        94 ~~l~~~~~------~~~~~~~~~~~~~i~~~i~~gl~~lH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~  164 (283)
T d1mqba_          94 GALDKFLR------EKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  164 (283)
T ss_dssp             EEHHHHHH------HTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC--------
T ss_pred             Ccchhhhh------cccccccHHHHHHHHHHHHHhhhhcc---ccccccCccccceEEECCCCeEEEcccchhhcccCCC
Confidence            99998884      23467999999999999999999999   8999999999999999999999999999998775443


Q ss_pred             cc--chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 TH--ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~--~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ..  ......||+.|++||+....           |++  ||+ ++.+++ ......+++.....+.+++ .+..++..+
T Consensus       165 ~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~~~~~l  242 (283)
T d1mqba_         165 EATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPY-WELSNHEVMKAINDGFRLP-TPMDCPSAI  242 (283)
T ss_dssp             ---------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTT-TTCCHHHHHHHHHTTCCCC-CCTTCBHHH
T ss_pred             ccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCcc-ccCCHHHHHHHHhccCCCC-CchhhHHHH
Confidence            22  23345688999998865432           999  888 444433 3333344443333333322 224678899


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+|+.+||+.||++|| +.||++.|+.+.+.
T Consensus       243 ~~li~~cl~~~p~~RPt~~eil~~L~~l~~~  273 (283)
T d1mqba_         243 YQLMMQCWQQERARRPKFADIVSILDKLIRA  273 (283)
T ss_dssp             HHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence            9999999999999999 99999999988654

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-45  Score=306.86  Aligned_cols=234  Identities=17%  Similarity=0.218  Sum_probs=184.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.++.     ..++..||||.++.. .....++|.+|+.+|++++|||||+++|++.. +.+++||||+++
T Consensus        19 ~G~fg~Vy~~~~~~-----~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lvmE~~~~   92 (285)
T d1u59a_          19 CGNFGSVRQGVYRM-----RKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGG   92 (285)
T ss_dssp             CCTTEEEEEEEEC--------CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             cccCeEEEEEEEec-----CCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEEEEeCCC
Confidence            89999999998742     014557999999764 33445789999999999999999999999865 568999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++.      ..+..+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+|+.+....
T Consensus        93 g~L~~~l~------~~~~~l~~~~~~~i~~qi~~gL~ylH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~  163 (285)
T d1u59a_          93 GPLHKFLV------GKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD  163 (285)
T ss_dssp             EEHHHHHT------TCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred             CcHHHHhh------ccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCcCchhheeeccCCceeeccchhhhcccccc
Confidence            99999982      33567999999999999999999999   8999999999999999999999999999998876543


Q ss_pred             ccc--hhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          197 THI--SELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       197 ~~~--~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ...  .....||+.|++||+....           ||+  ||+ ....|+... ...++......+.++ +.+..+++.+
T Consensus       164 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~-~~~~~~~~i~~~~~~-~~p~~~~~~l  241 (285)
T d1u59a_         164 SYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM-KGPEVMAFIEQGKRM-ECPPECPPEL  241 (285)
T ss_dssp             CEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC-CTHHHHHHHHTTCCC-CCCTTCCHHH
T ss_pred             cccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCC-CHHHHHHHHHcCCCC-CCCCcCCHHH
Confidence            322  2345678899888764322           998  887 344455433 233333333333332 2235788899


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          261 AHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      .+||.+||+.||++|| +.+|.+.|+.+.
T Consensus       242 ~~li~~cl~~~p~~RPs~~~i~~~L~~~~  270 (285)
T d1u59a_         242 YALMSDCWIYKWEDRPDFLTVEQRMRACY  270 (285)
T ss_dssp             HHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            9999999999999999 999999998754

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-45  Score=304.83  Aligned_cols=232  Identities=18%  Similarity=0.211  Sum_probs=180.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+|.+..     ..+++.||||+++..  +....+++.+|+.+|++++||||++++|++.. +..++||||++
T Consensus        17 ~G~fG~Vy~~~~~~-----~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~   90 (277)
T d1xbba_          17 SGNFGTVKKGYYQM-----KKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAE   90 (277)
T ss_dssp             ECSSEEEEEEEEEC-----SSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred             cCCCeEEEEEEEcc-----CCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCC
Confidence            89999999998641     014578999999653  33345679999999999999999999999865 45789999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.++++       ....+++..++.++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|+.+...
T Consensus        91 ~g~L~~~l~-------~~~~l~~~~~~~i~~qi~~gl~ylH---~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~  160 (277)
T d1xbba_          91 LGPLNKYLQ-------QNRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRAD  160 (277)
T ss_dssp             TEEHHHHHH-------HCTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTT
T ss_pred             CCcHHHHHh-------hccCCCHHHHHHHHHHHHHHHhhHH---hCCcccCCCcchhhcccccCcccccchhhhhhcccc
Confidence            999999994       3456999999999999999999999   899999999999999999999999999999877544


Q ss_pred             Ccc--chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          196 ETH--ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       196 ~~~--~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      ...  ......||+.|++||.....           |++  ||+ ....|+... ...++......+.++ +.+..+++.
T Consensus       161 ~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~-~~~~~~~~i~~~~~~-~~p~~~~~~  238 (277)
T d1xbba_         161 ENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM-KGSEVTAMLEKGERM-GCPAGCPRE  238 (277)
T ss_dssp             CSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC-CHHHHHHHHHTTCCC-CCCTTCCHH
T ss_pred             ccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCC-CHHHHHHHHHcCCCC-CCCcccCHH
Confidence            332  23345688999888855322           998  888 344454432 233333333333332 223477889


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      +.+|+.+||+.||++|| +.+|++.|+..
T Consensus       239 ~~~li~~cl~~dp~~RPs~~~i~~~L~~~  267 (277)
T d1xbba_         239 MYDLMNLCWTYDVENRPGFAAVELRLRNY  267 (277)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHhhCH
Confidence            99999999999999999 99999988775

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-45  Score=309.08  Aligned_cols=227  Identities=15%  Similarity=0.171  Sum_probs=184.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       +++.||+|.++.......+.+.+|+.+|++++||||+++++++..++..++||||+++|
T Consensus        22 ~G~fg~Vy~~~~~~-------~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g   94 (288)
T d2jfla1          22 DGAFGKVYKAQNKE-------TSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGG   94 (288)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTE
T ss_pred             eCCCcEEEEEEECC-------CCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCCC
Confidence            99999999999876       89999999998766666778999999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|.+++.+      ....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+|...... .
T Consensus        95 ~L~~~~~~------~~~~l~e~~~~~i~~qi~~gL~ylH---~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~-~  164 (288)
T d2jfla1          95 AVDAVMLE------LERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT-I  164 (288)
T ss_dssp             EHHHHHHH------HTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHH-H
T ss_pred             cHHHHHHh------cCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEEeecChhheeECCCCCEEEEechhhhccCCC-c
Confidence            99999842      2356999999999999999999999   899999999999999999999999999999765322 1


Q ss_pred             cchhhhhccccccccccc-----------CCC-----CeE--EEccchhhhhhccchhhhcccccccCCC-CCCchHHHH
Q 044211          198 HISELLSGLRAFDLARLN-----------EDD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRS-CSGNQQQLQ  258 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~-----------~~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  258 (292)
                      .......||+.|++||+.           .++     ||+  ||+....|+.... ..+.+.....+.++ ...+..+++
T Consensus       165 ~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~-~~~~~~~i~~~~~~~~~~~~~~s~  243 (288)
T d2jfla1         165 QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELN-PMRVLLKIAKSEPPTLAQPSRWSS  243 (288)
T ss_dssp             HHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSC-GGGHHHHHHHSCCCCCSSGGGSCH
T ss_pred             ccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCC-HHHHHHHHHcCCCCCCCccccCCH
Confidence            123456799999999864           122     999  8883334544432 23333333333332 223356788


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+.+|+.+||+.||++|| +.|+++
T Consensus       244 ~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         244 NFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             HHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             HHHHHHHHHccCChhHCcCHHHHhc
Confidence            999999999999999999 999976

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-45  Score=302.45  Aligned_cols=225  Identities=16%  Similarity=0.228  Sum_probs=179.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeec----CCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE----TQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~----~~~~~lv~  111 (292)
                      +|+||+||+|.+..       +++.||+|.+...  .....+.+.+|+++|++++||||+++++++..    ...+++||
T Consensus        19 ~G~fg~Vy~~~~~~-------~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          19 RGSFKTVYKGLDTE-------TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             cCcCcEEEEEEECC-------CCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            99999999999875       8899999998653  33345678999999999999999999999865    34578999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--cccCCCCCCceEec-CCCceEEeeccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRP--VIFRDFKLSNILFN-EENVAKLFDFSF  188 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~--i~H~dlk~~nili~-~~~~~kl~Dfg~  188 (292)
                      ||+++|+|.+++.+       ...+++..+..++.|++.||.|||   +.+  |+||||||+|||++ +++.+||+|||+
T Consensus        92 E~~~~g~L~~~l~~-------~~~~~~~~~~~~~~qi~~gl~yLH---~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGl  161 (270)
T d1t4ha_          92 ELMTSGTLKTYLKR-------FKVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGL  161 (270)
T ss_dssp             ECCCSCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTG
T ss_pred             eCCCCCcHHHHHhc-------cccccHHHHHHHHHHHHHHHHHHH---HCCCCEEeCCcChhhceeeCCCCCEEEeecCc
Confidence            99999999999943       346899999999999999999999   666  99999999999997 578999999999


Q ss_pred             ccccCCCCccchhhhhcccccccccccCCC----------CeE--EEccchhhhhhccchhhhcccccccCCCCCCchHH
Q 044211          189 SISIPEGETHISELLSGLRAFDLARLNEDD----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQ  256 (292)
Q Consensus       189 a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (292)
                      |.......   .....||+.|++||+....          ||+  ||+....|+........+......+..+...+...
T Consensus       162 a~~~~~~~---~~~~~GT~~Y~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~  238 (270)
T d1t4ha_         162 ATLKRASF---AKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVA  238 (270)
T ss_dssp             GGGCCTTS---BEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCC
T ss_pred             ceeccCCc---cCCcccCccccCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCCCcccCccC
Confidence            98654332   2456799999999876544          999  88833445554444444444333333333222345


Q ss_pred             HHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          257 LQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       257 ~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      ++.+.+|+.+||+.||++|| +.|+++
T Consensus       239 ~~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         239 IPEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence            67899999999999999999 999976

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-45  Score=305.29  Aligned_cols=232  Identities=18%  Similarity=0.217  Sum_probs=179.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+.        +++.||||.++... ...+.|.+|+.++++++|||||+++|++. .+..++||||+++|
T Consensus        27 ~G~fg~Vy~~~~~--------~~~~vAiK~l~~~~-~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~Ey~~~g   96 (285)
T d1fmka3          27 QGCFGEVWMGTWN--------GTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMSKG   96 (285)
T ss_dssp             ECSSCEEEEEEET--------TTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEECCCTTC
T ss_pred             eCCCeEEEEEEEC--------CCCEEEEEEECccc-CCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEEecCCC
Confidence            9999999999997        77889999997653 34577999999999999999999999985 46689999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCCc
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGET  197 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~~  197 (292)
                      +|..++...     ....+++..++.++.||+.||+|||   ..+|+||||||+||||+.++.+||+|||+|+....+..
T Consensus        97 ~l~~~~~~~-----~~~~l~~~~~~~i~~~i~~gl~~LH---~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~  168 (285)
T d1fmka3          97 SLLDFLKGE-----TGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY  168 (285)
T ss_dssp             BHHHHHSHH-----HHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC-------
T ss_pred             chhhhhhhc-----ccccchHHHHHHHHHHHHHHHHHHh---hhheecccccceEEEECCCCcEEEcccchhhhccCCCc
Confidence            999998322     2346999999999999999999999   88999999999999999999999999999987765554


Q ss_pred             cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHHH
Q 044211          198 HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAHL  263 (292)
Q Consensus       198 ~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  263 (292)
                      .......||+.|++|++....           |++  ||+ +.. +++......+.+.....+...+ .+..++..+.++
T Consensus       169 ~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~-p~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~l~~l  246 (285)
T d1fmka3         169 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-VPYPGMVNREVLDQVERGYRMP-CPPECPESLHDL  246 (285)
T ss_dssp             -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTC-CSSTTCCHHHHHHHHHTTCCCC-CCTTSCHHHHHH
T ss_pred             eeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCC-CCCCCCCHHHHHHHHHhcCCCC-CCcccCHHHHHH
Confidence            445556789999887765433           888  888 444 3333334444444333333222 234778899999


Q ss_pred             HhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          264 IFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       264 i~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      +.+||+.||++|| +.+|++.|+....
T Consensus       247 i~~cl~~dP~~Rps~~~i~~~L~~~~~  273 (285)
T d1fmka3         247 MCQCWRKEPEERPTFEYLQAFLEDYFT  273 (285)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHTTTS
T ss_pred             HHHHcccCHhHCcCHHHHHHHHhhhhc
Confidence            9999999999999 9999999987653

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-44  Score=300.43  Aligned_cols=221  Identities=19%  Similarity=0.263  Sum_probs=182.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||+||+|.+..       +++.||+|.+...   .......+.+|+.++++++||||+++++++.+++..++||||+
T Consensus        16 ~G~fg~Vy~~~~~~-------~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivmEy~   88 (263)
T d2j4za1          16 KGKFGNVYLAREKQ-------SKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYA   88 (263)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cCCCcEEEEEEECC-------CCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEEeec
Confidence            89999999999975       8999999998642   2234567899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++..       ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+|.....
T Consensus        89 ~~g~L~~~l~~-------~~~l~e~~~~~i~~qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~  158 (263)
T d2j4za1          89 PLGTVYRELQK-------LSKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS  158 (263)
T ss_dssp             TTCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCC
T ss_pred             CCCcHHHHHhh-------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeeeeccccceecCCCCEeecccceeeecCC
Confidence            99999999943       346999999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ..   .....||+.|++||+....           ||+  ||+ |+. |+ ......+.+..........+  ...++.+
T Consensus       159 ~~---~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~-Pf-~~~~~~~~~~~i~~~~~~~p--~~~s~~~  231 (263)
T d2j4za1         159 SR---RTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP-PF-EANTYQETYKRISRVEFTFP--DFVTEGA  231 (263)
T ss_dssp             CC---CEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSC-TT-CCSSHHHHHHHHHTTCCCCC--TTSCHHH
T ss_pred             Cc---ccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCC-CC-CCCCHHHHHHHHHcCCCCCC--ccCCHHH
Confidence            33   2346799999888765433           999  888 654 44 33334444444444444333  2567889


Q ss_pred             HHHHhHhcCCCCCCCC-HHHHHH
Q 044211          261 AHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      .+|+.+||+.||++|| +.|+++
T Consensus       232 ~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         232 RDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHccCCHhHCcCHHHHHc
Confidence            9999999999999999 999986

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-44  Score=305.05  Aligned_cols=243  Identities=16%  Similarity=0.181  Sum_probs=182.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+|.+....  .......||+|.+... .......+.+|+.+++++ +|||||++++++...+..++|||||+
T Consensus        47 ~G~fG~Vy~a~~~~~~--~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~  124 (325)
T d1rjba_          47 SGAFGKVMNATAYGIS--KTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCC  124 (325)
T ss_dssp             ECSSEEEEEEEEESCS--SSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             eCCCeEEEEEEEcCCC--cccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEEEEcCC
Confidence            8999999999875200  0112347999998654 333446789999999998 89999999999999999999999999


Q ss_pred             CCChhHHhhhhCCC----------------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC
Q 044211          116 CGSLADRIRIHHTP----------------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN  179 (292)
Q Consensus       116 ~gsL~~~l~~~~~~----------------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~  179 (292)
                      +|+|.++++.....                ......+++..++.++.|++.||.|||   +.+|+||||||+|||++.++
T Consensus       125 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH---~~~IiHRDlKp~Nill~~~~  201 (325)
T d1rjba_         125 YGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGK  201 (325)
T ss_dssp             TCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGGGEEEETTT
T ss_pred             CCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCchhccccccCC
Confidence            99999999543211                112356899999999999999999999   89999999999999999999


Q ss_pred             ceEEeecccccccCCCCcc-chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhccccc
Q 044211          180 VAKLFDFSFSISIPEGETH-ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLI  244 (292)
Q Consensus       180 ~~kl~Dfg~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~  244 (292)
                      .+||+|||+|+........ ......||+.|++||+....           ||+  ||+ .+..|+..... ...+...+
T Consensus       202 ~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~-~~~~~~~~  280 (325)
T d1rjba_         202 VVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV-DANFYKLI  280 (325)
T ss_dssp             EEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHH
T ss_pred             eEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCH-HHHHHHHH
Confidence            9999999999876544332 23456689999988854322           999  888 45555543322 22222233


Q ss_pred             ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHH
Q 044211          245 MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQA  286 (292)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~  286 (292)
                      .....++.+..+++.+.+||.+||+.||++|| +.||++.|..
T Consensus       281 ~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~  323 (325)
T d1rjba_         281 QNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGC  323 (325)
T ss_dssp             HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             hcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHhC
Confidence            33333333357788999999999999999999 9999999853

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.3e-44  Score=304.48  Aligned_cols=221  Identities=19%  Similarity=0.240  Sum_probs=180.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc---chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP---RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||+||+|.+..       +++.||||.++....   ...+.+.+|+.++++++|||||++++++..++..++|||||
T Consensus        25 ~G~fg~Vy~a~~~~-------~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~   97 (309)
T d1u5ra_          25 HGSFGAVYFARDVR-------NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYC   97 (309)
T ss_dssp             ECSSSEEEEEEETT-------TTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEec
Confidence            89999999999865       899999999976432   23456899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+|+|..++.       ....+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|.....
T Consensus        98 ~~g~l~~~~~-------~~~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (309)
T d1u5ra_          98 LGSASDLLEV-------HKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  167 (309)
T ss_dssp             SEEHHHHHHH-------HTSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred             CCCchHHHHH-------hCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEECCCCCEEEeecccccccCC
Confidence            9998877662       3457999999999999999999999   89999999999999999999999999999986643


Q ss_pred             CCccchhhhhcccccccccccC---------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          195 GETHISELLSGLRAFDLARLNE---------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~---------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      .     ....||+.|++||+..         ++     ||+  ||+ |.. |+..... ...+.....+..+...+..++
T Consensus       168 ~-----~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~-Pf~~~~~-~~~~~~i~~~~~~~~~~~~~s  240 (309)
T d1u5ra_         168 A-----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP-PLFNMNA-MSALYHIAQNESPALQSGHWS  240 (309)
T ss_dssp             B-----CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSC-TTTTSCH-HHHHHHHHHSCCCCCSCTTSC
T ss_pred             C-----CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCC-CCCCCCH-HHHHHHHHhCCCCCCCCCCCC
Confidence            2     3457999999998642         22     999  888 554 5544332 223333334444433334667


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+.+|+.+||+.||++|| +.|+++
T Consensus       241 ~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         241 EYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHHHHCcCChhHCcCHHHHHh
Confidence            8999999999999999999 999875

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-44  Score=298.54  Aligned_cols=237  Identities=17%  Similarity=0.201  Sum_probs=174.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..    ....+..||||.++.... ...+.+.+|+.++++++||||++++|++. .+..++||||+++
T Consensus        17 ~G~fg~Vy~a~~~~----~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~iv~E~~~~   91 (273)
T d1mp8a_          17 EGQFGDVHQGIYMS----PENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTL   91 (273)
T ss_dssp             ECSSSEEEEEEECC----C--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECCTT
T ss_pred             eCCCcEEEEEEEec----CCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEEEEEeccC
Confidence            89999999998752    000235699999876433 33467999999999999999999999985 4678999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++.      .....+++..++.++.|++.||.|||   +.+++||||||+||++++++.+||+|||+|+......
T Consensus        92 g~l~~~~~------~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~  162 (273)
T d1mp8a_          92 GELRSFLQ------VRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST  162 (273)
T ss_dssp             EEHHHHHH------HTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC-----------
T ss_pred             CcHHhhhh------ccCCCCCHHHHHHHHHHHHHHhhhhc---ccCeeccccchhheeecCCCcEEEccchhheeccCCc
Confidence            99999874      23457899999999999999999999   8999999999999999999999999999998876555


Q ss_pred             ccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                      ........||+.|++|+.....           ||+  ||+ +..+|+.. ....+++.....+.++. .+..+++.+.+
T Consensus       163 ~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~-~~~~~~~~~i~~~~~~~-~~~~~~~~~~~  240 (273)
T d1mp8a_         163 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG-VKNNDVIGRIENGERLP-MPPNCPPTLYS  240 (273)
T ss_dssp             --------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTT-CCGGGHHHHHHTTCCCC-CCTTCCHHHHH
T ss_pred             ceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCC-CCHHHHHHHHHcCCCCC-CCCCCCHHHHH
Confidence            5555566789999888775422           988  887 44544433 33344444333333322 23478889999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      ||.+||+.||++|| +.||++.|+.+.+.
T Consensus       241 li~~cl~~dp~~Rps~~ei~~~L~~i~~~  269 (273)
T d1mp8a_         241 LMTKCWAYDPSRRPRFTELKAQLSTILEE  269 (273)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence            99999999999999 99999999988653

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-43  Score=298.54  Aligned_cols=238  Identities=15%  Similarity=0.235  Sum_probs=183.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeec-CCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE-TQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~~~  115 (292)
                      +|+||+||+|.+..    ...+...||||.++.. .....++|.+|+.+|++++||||++++|++.. ++..++||||++
T Consensus        37 ~G~fg~Vyk~~~~~----~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~~  112 (311)
T d1r0pa_          37 RGHFGCVYHGTLLD----NDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMK  112 (311)
T ss_dssp             EETTEEEEEEEECC--------CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECCT
T ss_pred             ecCCeEEEEEEEEC----CCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEee
Confidence            99999999999852    0002236999999754 44456789999999999999999999999875 457899999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|+|.+++.      .....+++..++.++.|++.||.|||   ..+|+||||||+|||+++++.+||+|||+++.....
T Consensus       113 ~g~l~~~~~------~~~~~~~~~~~~~i~~qia~gL~~lH---~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~  183 (311)
T d1r0pa_         113 HGDLRNFIR------NETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  183 (311)
T ss_dssp             TCBHHHHHH------CTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTT
T ss_pred             cCchhhhhc------cccccchHHHHHHHHHHHHHhhhhhc---ccCcccCCccHHhEeECCCCCEEEecccchhhcccc
Confidence            999999983      34556788899999999999999999   899999999999999999999999999999877544


Q ss_pred             Cccc---hhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          196 ETHI---SELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       196 ~~~~---~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ....   .....||+.|++|+.....           |++  ||+ ++. |+.......+.......+.++. .+..+++
T Consensus       184 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~-p~~~~~~~~~~~~~i~~g~~~~-~p~~~~~  261 (311)
T d1r0pa_         184 EFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGA-PPYPDVNTFDITVYLLQGRRLL-QPEYCPD  261 (311)
T ss_dssp             TCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC-CSCC------CHHHHHTTCCCC-CCTTCCH
T ss_pred             ccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCC-CCCCCCCHHHHHHHHHcCCCCC-CcccCcH
Confidence            3222   2335678889777654322           888  888 444 3433333333333334444333 2356788


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      .+.+||.+||+.||++|| +.||++.|+++..+
T Consensus       262 ~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         262 PLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence            999999999999999999 99999999998754

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-44  Score=298.86  Aligned_cols=231  Identities=14%  Similarity=0.148  Sum_probs=169.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeec--CCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLE--TQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       +++.||+|.++...  ....+.+.+|+.++++++||||+++++++.+  ++.+|+||||
T Consensus        14 ~G~fg~Vy~~~~~~-------~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy   86 (269)
T d2java1          14 TGSYGRCQKIRRKS-------DGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEY   86 (269)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEEC
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEec
Confidence            89999999999875       89999999997643  3344678999999999999999999999864  4568999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC--CCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF--PRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      |++|+|.+++.+..   .....+++..++.++.|++.||.|||+..  ..+|+||||||+|||++.++.+||+|||+|+.
T Consensus        87 ~~~g~L~~~i~~~~---~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~  163 (269)
T d2java1          87 CEGGDLASVITKGT---KERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI  163 (269)
T ss_dssp             CTTEEHHHHHHHHH---HHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHH
T ss_pred             CCCCcHHHHHHhcc---ccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceee
Confidence            99999999995432   13567999999999999999999999321  13599999999999999999999999999988


Q ss_pred             cCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          192 IPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      +..+.. ......||+.|++||+....           ||+  ||+ |.. |+.. ....++......+..+.. +..++
T Consensus       164 ~~~~~~-~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~-Pf~~-~~~~~~~~~i~~~~~~~~-~~~~s  239 (269)
T d2java1         164 LNHDTS-FAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMP-PFTA-FSQKELAGKIREGKFRRI-PYRYS  239 (269)
T ss_dssp             C------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC-SCCC-SSHHHHHHHHHHTCCCCC-CTTSC
T ss_pred             cccCCC-ccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCC-CCCC-CCHHHHHHHHHcCCCCCC-CcccC
Confidence            754332 23457899999998876433           999  888 643 4432 233333333333333322 23677


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+.+|+.+||+.||++|| +.|+++
T Consensus       240 ~~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         240 DELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHHHcCCChhHCcCHHHHHh
Confidence            8899999999999999999 999875

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-43  Score=299.91  Aligned_cols=244  Identities=20%  Similarity=0.234  Sum_probs=188.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||+||+|++...  ....+++.||||+++..... ..+++.+|+.++++++||||+++++++...+..++++||+++
T Consensus        23 ~G~fG~Vy~a~~~~~--~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~~v~e~~~~  100 (301)
T d1lufa_          23 EGAFGRVFQARAPGL--LPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAY  100 (301)
T ss_dssp             ECSSCEEEEEEEETS--STTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             eCCCeEEEEEEECCC--ccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCceEEEEEecCC
Confidence            999999999987310  01125688999999765333 456799999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCC-----------------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC
Q 044211          117 GSLADRIRIHHTP-----------------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN  179 (292)
Q Consensus       117 gsL~~~l~~~~~~-----------------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~  179 (292)
                      |+|.+++......                 ......+++..++.++.|++.||+|||   +.+++||||||+|||++.++
T Consensus       101 g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH---~~~ivHrDlKp~NILld~~~  177 (301)
T d1lufa_         101 GDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENM  177 (301)
T ss_dssp             CBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG
T ss_pred             CcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcc---cCCeEeeEEcccceEECCCC
Confidence            9999999543211                 122346899999999999999999999   89999999999999999999


Q ss_pred             ceEEeecccccccCCCCc-cchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhccccc
Q 044211          180 VAKLFDFSFSISIPEGET-HISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLI  244 (292)
Q Consensus       180 ~~kl~Dfg~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~  244 (292)
                      .+||+|||+|+...+... .......|++.|++|++...      +     ||+  ||+ +..+|+... ...+++....
T Consensus       178 ~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~-~~~e~~~~v~  256 (301)
T d1lufa_         178 VVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM-AHEEVIYYVR  256 (301)
T ss_dssp             CEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS-CHHHHHHHHH
T ss_pred             cEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCC-CHHHHHHHHH
Confidence            999999999987654332 22345668888987775443      2     999  898 555454443 3444444444


Q ss_pred             ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          245 MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      .+..+. .+..+++++.+|+.+||+.||++|| |.||++.|++|.
T Consensus       257 ~~~~~~-~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~  300 (301)
T d1lufa_         257 DGNILA-CPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC  300 (301)
T ss_dssp             TTCCCC-CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             cCCCCC-CCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence            444332 2247788999999999999999999 999999999875

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-43  Score=294.00  Aligned_cols=228  Identities=19%  Similarity=0.238  Sum_probs=175.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec-CCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE-TQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+         +|+.||||+++...  ..+.+.+|+.++++++||||++++|++.. ++.+++||||+++
T Consensus        17 ~G~fg~Vy~~~~---------~~~~vAvK~i~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~   85 (262)
T d1byga_          17 KGEFGDVMLGDY---------RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK   85 (262)
T ss_dssp             ECSSCEEEEEEE---------TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTT
T ss_pred             cCCCeEEEEEEE---------CCeEEEEEEECcHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCC
Confidence            899999999998         78899999997643  34679999999999999999999999865 4668999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEGE  196 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~~  196 (292)
                      |+|.+++...     ....+++..+++++.||+.||.|||   +.+++||||||+|||++.++.+||+|||+++..... 
T Consensus        86 g~L~~~l~~~-----~~~~l~~~~~~~i~~~i~~al~ylH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~-  156 (262)
T d1byga_          86 GSLVDYLRSR-----GRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-  156 (262)
T ss_dssp             EEHHHHHHHH-----HHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC--------
T ss_pred             CCHHHHHHhc-----CCCCCCHHHHHHHHHHHHhhccccc---cCceeccccchHhheecCCCCEeecccccceecCCC-
Confidence            9999999432     1235899999999999999999999   899999999999999999999999999999866432 


Q ss_pred             ccchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHHHH
Q 044211          197 THISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAFAH  262 (292)
Q Consensus       197 ~~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (292)
                         .....++..|++|++..      ++     |++  ||+ +..+|+ ......++++....+..+.. +..+++.+.+
T Consensus       157 ---~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~-~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~  231 (262)
T d1byga_         157 ---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY-PRIPLKDVVPRVEKGYKMDA-PDGCPPAVYE  231 (262)
T ss_dssp             --------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSC-TTSCGGGHHHHHTTTCCCCC-CTTCCHHHHH
T ss_pred             ---CccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHcCCCCCC-CccCCHHHHH
Confidence               23345778887777553      22     998  988 444443 33344444444333333322 2467789999


Q ss_pred             HHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          263 LIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       263 li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      |+.+||+.||++|| +.++++.|++++..
T Consensus       232 li~~cl~~dP~~Rps~~~l~~~L~~i~~~  260 (262)
T d1byga_         232 VMKNCWHLDAAMRPSFLQLREQLEHIKTH  260 (262)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcccCHhHCcCHHHHHHHHHHHHhC
Confidence            99999999999999 99999999998764

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-43  Score=298.39  Aligned_cols=224  Identities=16%  Similarity=0.160  Sum_probs=179.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||+||+|.+..       +++.||||+++..   .....+.+.+|+.++++++||||+++++++.+++.+|+||||+
T Consensus        18 ~G~fg~Vy~a~~~~-------~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~   90 (288)
T d1uu3a_          18 EGSFSTVVLARELA-------TSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYA   90 (288)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECCC
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEcc
Confidence            89999999999875       8999999998642   2234567999999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   +.+|+||||||+|||+++++.+||+|||+|+.+..
T Consensus        91 ~gg~L~~~~~-------~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~  160 (288)
T d1uu3a_          91 KNGELLKYIR-------KIGSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSP  160 (288)
T ss_dssp             TTEEHHHHHH-------HHSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECC-
T ss_pred             CCCCHHHhhh-------ccCCCCHHHHHHHHHHHHHHHHhhc---cccEEcCcCCccccccCCCceEEecccccceeccc
Confidence            9999999984       3456999999999999999999999   89999999999999999999999999999987754


Q ss_pred             CC-ccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          195 GE-THISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       195 ~~-~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .. ........||+.|++||+....           ||+  ||+ |. .||.. .+....+..........+  ...++.
T Consensus       161 ~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~-~Pf~~-~~~~~~~~~i~~~~~~~p--~~~s~~  236 (288)
T d1uu3a_         161 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL-PPFRA-GNEYLIFQKIIKLEYDFP--EKFFPK  236 (288)
T ss_dssp             ---------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSS-CSSCC-SSHHHHHHHHHTTCCCCC--TTCCHH
T ss_pred             CCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCC-CCCCC-cCHHHHHHHHHcCCCCCC--ccCCHH
Confidence            33 2233456799999999876433           999  888 54 34433 333333344444444333  366788


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+||.+||+.||++|| +.|++.
T Consensus       237 ~~~li~~~L~~dP~~R~t~~e~~~  260 (288)
T d1uu3a_         237 ARDLVEKLLVLDATKRLGCEEMEG  260 (288)
T ss_dssp             HHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred             HHHHHHHHccCCHhHCcCHHHHcC
Confidence            99999999999999999 998643

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-43  Score=296.10  Aligned_cols=248  Identities=16%  Similarity=0.210  Sum_probs=179.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhc-CCCCccceeeeeecC-CcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQM-IHRCIFKLIGCCLET-QIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~-~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..  .....+++.||||.++... ....+.+.+|...+.++ +|+||+.+++++... ..+++|||||
T Consensus        23 ~G~fG~Vy~a~~~~--~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~iv~E~~  100 (299)
T d1ywna1          23 RGAFGQVIEADAFG--IDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFC  100 (299)
T ss_dssp             ECSSCEEEEEEEES--TTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECC
T ss_pred             ecCCeEEEEEEEcC--CCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEEEEEec
Confidence            99999999998642  0112256789999997643 33456788888888888 689999999998764 4689999999


Q ss_pred             CCCChhHHhhhhCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEee
Q 044211          115 NCGSLADRIRIHHTP---------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFD  185 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~D  185 (292)
                      ++|+|.++++.....         ......+++..+..++.||+.||.|||   +.+|+||||||+|||+++++.+||+|
T Consensus       101 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~ivHrDlKp~NILl~~~~~~Kl~D  177 (299)
T d1ywna1         101 KFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICD  177 (299)
T ss_dssp             TTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECC
T ss_pred             CCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHH---hCCCcCCcCCccceeECCCCcEEEcc
Confidence            999999999543210         112456899999999999999999999   89999999999999999999999999


Q ss_pred             cccccccCCCCc-cchhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCC
Q 044211          186 FSFSISIPEGET-HISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       186 fg~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      ||+|+....... .......||+.|++||+..      ++     |++  ||+ +..+|+........+.. .+.....+
T Consensus       178 FGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~-~~~~~~~~  256 (299)
T d1ywna1         178 FGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR-RLKEGTRM  256 (299)
T ss_dssp             ------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHH-HHHHTCCC
T ss_pred             CcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHH-HHhcCCCC
Confidence            999987654433 2344567899998888543      22     999  888 65555544332222222 22222222


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      ..+..+++.+.+++.+||+.||++|| +.||+++|+++.+++
T Consensus       257 ~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq~n  298 (299)
T d1ywna1         257 RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  298 (299)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhCC
Confidence            23346788999999999999999999 999999999988764

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-43  Score=297.22  Aligned_cols=233  Identities=18%  Similarity=0.238  Sum_probs=179.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCe----EEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQER----PVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~----~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||+||+|.+..       +++    .||+|.++.. .....+++.+|+.++++++|||||+++|+|..+ ..++++|
T Consensus        19 ~G~fG~Vy~~~~~~-------~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~v~e   90 (317)
T d1xkka_          19 SGAFGTVYKGLWIP-------EGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQ   90 (317)
T ss_dssp             ECSSEEEEEEEECC-----------CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEEEEE
T ss_pred             cCCCeEEEEEEEcC-------CCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeEEEE
Confidence            89999999999864       554    6899988653 344567899999999999999999999999864 5678899


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+.+|+|.+.+..      ....+++..++.++.||+.||.|||   ..+|+||||||+|||++.++.+||+|||+|+..
T Consensus        91 ~~~~~~l~~~~~~------~~~~~~~~~~~~i~~qi~~gl~yLH---~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~  161 (317)
T d1xkka_          91 LMPFGCLLDYVRE------HKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  161 (317)
T ss_dssp             CCTTCBHHHHHHH------TSSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCCSHHHHT
T ss_pred             eccCCcccccccc------cccCCCHHHHHHHHHHHHHHHHHHH---HcCcccCcchhhcceeCCCCCeEeeccccceec
Confidence            9999999998842      3567899999999999999999999   899999999999999999999999999999887


Q ss_pred             CCCCcc-chhhhhccccccccccc------CCC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHH
Q 044211          193 PEGETH-ISELLSGLRAFDLARLN------EDD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQL  257 (292)
Q Consensus       193 ~~~~~~-~~~~~~g~~~y~~~~~~------~~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (292)
                      ...... ......||+.|++||+.      .++     |++  ||+ ++.+|+.. ....++......+.++ +.+..++
T Consensus       162 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~-~~~~~~~~~i~~~~~~-~~p~~~~  239 (317)
T d1xkka_         162 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG-IPASEISSILEKGERL-PQPPICT  239 (317)
T ss_dssp             TTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT-SCGGGHHHHHHHTCCC-CCCTTBC
T ss_pred             ccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHcCCCC-CCCcccC
Confidence            654433 23445689999888853      333     999  898 45545433 3333333333333322 2224778


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      +.+.+|+.+||+.||++|| +.||++.|+.+..
T Consensus       240 ~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~  272 (317)
T d1xkka_         240 IDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  272 (317)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHh
Confidence            8999999999999999999 9999999988754

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-42  Score=293.62  Aligned_cols=249  Identities=17%  Similarity=0.213  Sum_probs=186.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|......+....++..||||+++.... ....++.+|...+.++ +||||++++++|..++..++||||++
T Consensus        23 ~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~v~e~~~  102 (299)
T d1fgka_          23 EGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYAS  102 (299)
T ss_dssp             -----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred             ecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEEEEEccC
Confidence            999999999987532222223456899999976543 3457789999999998 79999999999999999999999999


Q ss_pred             CCChhHHhhhhCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeec
Q 044211          116 CGSLADRIRIHHTP---------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       116 ~gsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      +|+|.+++......         ......+++..++.++.|++.||+|||   +.+++||||||+|||++.++.+||+||
T Consensus       103 ~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH---~~~ivHrDiKp~NiLl~~~~~~kl~df  179 (299)
T d1fgka_         103 KGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADF  179 (299)
T ss_dssp             TCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECST
T ss_pred             CCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhh---hCCEEeeeecccceeecCCCCeEeccc
Confidence            99999999644211         123467899999999999999999999   899999999999999999999999999


Q ss_pred             ccccccCCCCcc-chhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCC
Q 044211          187 SFSISIPEGETH-ISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS  251 (292)
Q Consensus       187 g~a~~~~~~~~~-~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
                      |+++........ ......|++.|++|++...      +     |++  ||+ ++.+|+ .......++.....+.. ++
T Consensus       180 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~-~~~~~~~~~~~i~~~~~-~~  257 (299)
T d1fgka_         180 GLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY-PGVPVEELFKLLKEGHR-MD  257 (299)
T ss_dssp             TCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSS-TTCCHHHHHHHHHTTCC-CC
T ss_pred             hhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCC-CCCCHHHHHHHHHcCCC-CC
Confidence            999877544322 2345668888977765532      2     998  888 445444 33344444333323322 22


Q ss_pred             CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhcC
Q 044211          252 GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCSG  291 (292)
Q Consensus       252 ~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~~  291 (292)
                      .+..+++.+.+|+.+||+.||++|| +.||++.|+++..-+
T Consensus       258 ~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a~~  298 (299)
T d1fgka_         258 KPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALT  298 (299)
T ss_dssp             CCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             CCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHhhcC
Confidence            2346778999999999999999999 999999999987544

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=2e-42  Score=298.26  Aligned_cols=226  Identities=13%  Similarity=0.191  Sum_probs=184.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|.+..       +|+.||||.+........+.+.+|+.+|++++||||+++++++...+.+++||||+++|
T Consensus        36 ~G~fg~Vy~~~~~~-------~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg  108 (350)
T d1koaa2          36 TGAFGVVHRVTERA-------TGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGG  108 (350)
T ss_dssp             EETTEEEEEEEETT-------TTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCCSC
T ss_pred             cCcCeEEEEEEECC-------CCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCC
Confidence            99999999999875       89999999998765556677899999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC--CCceEEeecccccccCCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE--ENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~--~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|.+++.      .....+++..+..++.||+.||.|||   +.+|+||||||+|||++.  ++.+||+|||+|..+...
T Consensus       109 ~L~~~l~------~~~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~  179 (350)
T d1koaa2         109 ELFEKVA------DEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK  179 (350)
T ss_dssp             BHHHHHT------CTTSCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTT
T ss_pred             CHHHHHH------hhcCCCCHHHHHHHHHHHHHHHHHHH---hcCCeeeeechhHeeeccCCCCeEEEeecchheecccc
Confidence            9999992      23557999999999999999999999   899999999999999964  578999999999887544


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC--chHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG--NQQQLQA  259 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  259 (292)
                      ..  .....||+.|++||+....           ||+  +|+ |+. |+. .....+.+..........+.  ....++.
T Consensus       180 ~~--~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~-Pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  255 (350)
T d1koaa2         180 QS--VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLS-PFG-GENDDETLRNVKSCDWNMDDSAFSGISED  255 (350)
T ss_dssp             SC--EEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSC-SSC-CSSHHHHHHHHHHTCCCSCCGGGGGCCHH
T ss_pred             cc--cceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCC-CCC-CCCHHHHHHHHHhCCCCCCcccccCCCHH
Confidence            32  3456789999999876533           998  888 644 443 22333333333333322221  1356778


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+||.+||+.||++|| +.|+++.
T Consensus       256 ~~~li~~~L~~dP~~R~t~~eil~h  280 (350)
T d1koaa2         256 GKDFIRKLLLADPNTRMTIHQALEH  280 (350)
T ss_dssp             HHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHHccCChhHCcCHHHHhcC
Confidence            99999999999999999 9999874

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-43  Score=301.12  Aligned_cols=225  Identities=16%  Similarity=0.201  Sum_probs=174.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC-CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES-KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||+||+|.+..       +++.||+|.++.. +.....++.+|+.+|++++|||||+++++|.+++.+++||||+++
T Consensus        16 ~G~fg~V~~~~~~~-------~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy~~g   88 (322)
T d1s9ja_          16 AGNGGVVFKVSHKP-------SGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDG   88 (322)
T ss_dssp             CCSSCCEEEEEETT-------TTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCC
Confidence            89999999999876       8999999999764 334456799999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFP-RPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~-~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      |+|.+++.+       ...+++..+..++.|++.||.|||   + ++|+||||||+|||+++++.+||+|||+|......
T Consensus        89 g~L~~~l~~-------~~~l~~~~~~~~~~qil~aL~yLH---~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~  158 (322)
T d1s9ja_          89 GSLDQVLKK-------AGRIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  158 (322)
T ss_dssp             EEHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH
T ss_pred             CcHHHHHhh-------cCCCCHHHHHHHHHHHHHHHHHHH---HhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCC
Confidence            999999953       346899999999999999999999   6 48999999999999999999999999999876432


Q ss_pred             CccchhhhhcccccccccccCC------C-----CeE--EEc-cchhhhhhccch-h-hh--------------------
Q 044211          196 ETHISELLSGLRAFDLARLNED------D-----GYV--VLL-DHIKKYFEEDRL-N-EI--------------------  239 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~------~-----Gvi--el~-~~~~~~~~~~~~-~-~~--------------------  239 (292)
                      .   .....||+.|++||+...      +     ||+  ||+ |+. |+...... . ..                    
T Consensus       159 ~---~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~-Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (322)
T d1s9ja_         159 M---ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY-PIPPPDAKELELMFGCQVEGDAAETPPRPRTPG  234 (322)
T ss_dssp             T---C---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSC-CSSCCCTTHHHHHC-------------------
T ss_pred             c---cccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHhcCCcccCCccccccc
Confidence            2   245689999988876543      2     999  898 654 33221100 0 00                    


Q ss_pred             -------------------cccccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          240 -------------------IDPLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       240 -------------------~~~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                         .+......++..+....+.++.+|+.+||+.||++|| +.|+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~H  298 (322)
T d1s9ja_         235 RPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH  298 (322)
T ss_dssp             -----------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccccccccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence                               0000011111111112356899999999999999999 9999874

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.6e-43  Score=295.29  Aligned_cols=225  Identities=15%  Similarity=0.202  Sum_probs=165.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||+||+|.+..       +++.||||.+..... .....+.+|+.+|++++||||+++++++.+++.+++|||||++
T Consensus        19 ~G~fg~Vy~~~~~~-------~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~~g   91 (307)
T d1a06a_          19 TGAFSEVILAEDKR-------TQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSG   91 (307)
T ss_dssp             SGGGGGEEEEEETT-------TCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             eccCeEEEEEEECC-------CCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCC
Confidence            89999999999875       899999999975432 2335678999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec---CCCceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN---EENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~---~~~~~kl~Dfg~a~~~~  193 (292)
                      |+|.+++.       ....+++..+..++.|++.||.|||   +.+|+||||||+|||+.   +++.+||+|||+|+...
T Consensus        92 g~L~~~l~-------~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~  161 (307)
T d1a06a_          92 GELFDRIV-------EKGFYTERDASRLIFQVLDAVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMED  161 (307)
T ss_dssp             CBHHHHHH-------TCSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCC-------
T ss_pred             CcHHHhhh-------cccCCCHHHHHHHHHHHHHHHHhhh---hceeeeEEecccceeecccCCCceEEEeccceeEEcc
Confidence            99999993       3567999999999999999999999   89999999999999995   47899999999998765


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCC--CCchHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC--SGNQQQL  257 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  257 (292)
                      .+..  .....||+.|++||+....           ||+  ||+ |.. |+... ................  +.+...+
T Consensus       162 ~~~~--~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~-Pf~~~-~~~~~~~~i~~~~~~~~~~~~~~~s  237 (307)
T d1a06a_         162 PGSV--LSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYP-PFYDE-NDAKLFEQILKAEYEFDSPYWDDIS  237 (307)
T ss_dssp             -------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC-SCCCS-SHHHHHHHHHTTCCCCCTTTTTTSC
T ss_pred             CCCe--eeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCC-CCCCC-CHHHHHHHHhccCCCCCCccccCCC
Confidence            4332  3456799999998875433           999  888 543 44332 2233333333333222  2224677


Q ss_pred             HHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          258 QAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       258 ~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+.+|+.+||+.||++|| +.|+++.
T Consensus       238 ~~~~~li~~~L~~dP~~R~s~~eil~h  264 (307)
T d1a06a_         238 DSAKDFIRHLMEKDPEKRFTCEQALQH  264 (307)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence            8999999999999999999 9999873

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-43  Score=291.55  Aligned_cols=235  Identities=20%  Similarity=0.273  Sum_probs=174.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+...    ......||||+++..   .....+.|.+|+.++++++||||++++|++.+ +..++||||+
T Consensus        18 ~G~fg~Vy~~~~~~~----~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~lv~e~~   92 (273)
T d1u46a_          18 DGSFGVVRRGEWDAP----SGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMKMVTELA   92 (273)
T ss_dssp             ----CCCEEEEEECT----TSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECC
T ss_pred             cCCCeEEEEEEEECC----CCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchheeeeee
Confidence            899999999987420    002347999998753   33445689999999999999999999999975 4678999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|++.+++...      ...+++..++.++.|++.||.|||   +.+|+||||||+||+++.++.+||+|||++..+..
T Consensus        93 ~~~~l~~~~~~~------~~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~  163 (273)
T d1u46a_          93 PLGSLLDRLRKH------QGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQ  163 (273)
T ss_dssp             TTCBHHHHHHHH------GGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC
T ss_pred             cCcchhhhhhcc------cCCCCHHHHHHHHHHHHHHHHHhh---hCCEeeeeecHHHhccccccceeeccchhhhhccc
Confidence            999999988432      356999999999999999999999   89999999999999999999999999999998755


Q ss_pred             CCcc--chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          195 GETH--ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       195 ~~~~--~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ....  ......|+..|++|++....           |++  ||+ .+..|+.. ....+.+.........++.+..+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~-~~~~~~~~~i~~~~~~~~~~~~~~~  242 (273)
T d1u46a_         164 NDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIG-LNGSQILHKIDKEGERLPRPEDCPQ  242 (273)
T ss_dssp             -CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTT-CCHHHHHHHHHTSCCCCCCCTTCCH
T ss_pred             CCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCC-cCHHHHHHHHHhCCCCCCCcccccH
Confidence            4332  23345577888877755433           988  888 34555433 3344443433333333333356788


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHHh
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQAN  287 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~l  287 (292)
                      .+.+|+.+||+.||++|| +.+|.+.|++.
T Consensus       243 ~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         243 DIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            999999999999999999 99999999875

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=2.1e-42  Score=298.23  Aligned_cols=226  Identities=15%  Similarity=0.196  Sum_probs=184.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||.||+|....       +++.||||.++.........+.+|+.+|++++||||+++++++..++.+|+|||||++|
T Consensus        39 ~G~fg~V~~a~~~~-------~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg  111 (352)
T d1koba_          39 SGAFGVVHRCVEKA-------TGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGG  111 (352)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCC
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCC
Confidence            99999999999875       89999999998765555567889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec--CCCceEEeecccccccCCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN--EENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~--~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +|.+++.      .....+++..+..|+.||+.||.|||   +.+|+||||||+|||++  .++.+||+|||+|..+..+
T Consensus       112 ~L~~~~~------~~~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~  182 (352)
T d1koba_         112 ELFDRIA------AEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD  182 (352)
T ss_dssp             BHHHHTT------CTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT
T ss_pred             hHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccccccccccccCCCeEEEeecccceecCCC
Confidence            9998882      33557999999999999999999999   89999999999999998  6789999999999887654


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCC--CchHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS--GNQQQLQA  259 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  259 (292)
                      ..  .....||+.|++|++....           ||+  ||+ |.. ||... .....+..........+  .....++.
T Consensus       183 ~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~-Pf~~~-~~~~~~~~i~~~~~~~~~~~~~~~s~~  258 (352)
T d1koba_         183 EI--VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLS-PFAGE-DDLETLQNVKRCDWEFDEDAFSSVSPE  258 (352)
T ss_dssp             SC--EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCC-SSCCS-SHHHHHHHHHHCCCCCCSSTTTTSCHH
T ss_pred             Cc--eeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCC-CCCCC-CHHHHHHHHHhCCCCCCcccccCCCHH
Confidence            33  3446789999888876544           999  888 644 44332 22333333333332222  22356788


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                      +.+||.+||+.||++|| +.|+++.
T Consensus       259 ~~~li~~~L~~dp~~R~s~~eil~H  283 (352)
T d1koba_         259 AKDFIKNLLQKEPRKRLTVHDALEH  283 (352)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHHccCChhHCcCHHHHhcC
Confidence            99999999999999999 9999763

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-42  Score=293.84  Aligned_cols=247  Identities=16%  Similarity=0.201  Sum_probs=189.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc-chHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP-RTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||.||+|++...  ....+++.||||+++.... .....+.+|+.+++++ +||||++++|++...+..++||||++
T Consensus        33 ~G~fg~Vy~a~~~~~--~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvmE~~~  110 (311)
T d1t46a_          33 AGAFGKVVEATAYGL--IKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCC  110 (311)
T ss_dssp             ECSSEEEEEEEEESS--SSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             ecCCeEEEEEEEecc--ccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEEEcCC
Confidence            999999999986310  0112678999999986533 3445789999999999 69999999999999999999999999


Q ss_pred             CCChhHHhhhhCCC-----------CCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          116 CGSLADRIRIHHTP-----------QPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       116 ~gsL~~~l~~~~~~-----------~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                      +|+|.++++.....           ......+++..+..++.||+.||+|||   ..+++||||||+||+++.++.+|++
T Consensus       111 ~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH---~~~ivHrDLKp~NIl~~~~~~~ki~  187 (311)
T d1t46a_         111 YGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKIC  187 (311)
T ss_dssp             TEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEETTTEEEEC
T ss_pred             CCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccccccccccccCccccc
Confidence            99999999654321           123457899999999999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCCc-cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCC
Q 044211          185 DFSFSISIPEGET-HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRS  249 (292)
Q Consensus       185 Dfg~a~~~~~~~~-~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~  249 (292)
                      |||+++....... .......||+.|++|++....           |++  ||+ ++.++ +........+...+.....
T Consensus       188 DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~-~~~~~~~~~~~~~i~~~~~  266 (311)
T d1t46a_         188 DFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSP-YPGMPVDSKFYKMIKEGFR  266 (311)
T ss_dssp             CCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCS-STTCCSSHHHHHHHHHTCC
T ss_pred             ccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCC-CCCCCHHHHHHHHHhcCCC
Confidence            9999987765433 334456789999888765433           988  898 44433 3333332222222222222


Q ss_pred             CCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          250 CSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       250 ~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                      +..+..++..+.+||.+||+.||++|| |.+|++.|+++..+
T Consensus       267 ~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~~  308 (311)
T d1t46a_         267 MLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (311)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhhcc
Confidence            233346678999999999999999999 99999999886543

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-42  Score=295.41  Aligned_cols=239  Identities=19%  Similarity=0.212  Sum_probs=184.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCe--EEEEEeecCC-CcchHHHHHHHHHHHHhc-CCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQER--PVSVMKFDES-KPRTYDCCINNIVYASQM-IHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~--~vaiK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||.||+|.+..       ++.  .||||.++.. .....+.+.+|+.+|+++ +||||++++|++...+..++||||
T Consensus        20 ~G~fg~Vy~~~~~~-------~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey   92 (309)
T d1fvra_          20 EGNFGQVLKARIKK-------DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEY   92 (309)
T ss_dssp             CGGGCEEEEEEEEE-------TTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             eCCCcEEEEEEECC-------CCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEe
Confidence            99999999999864       554  5788888653 333456799999999999 799999999999999999999999


Q ss_pred             cCCCChhHHhhhhCC---------CCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEe
Q 044211          114 INCGSLADRIRIHHT---------PQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLF  184 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~---------~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~  184 (292)
                      +++|+|.+++.....         .......+++..+..++.||+.||.|||   +.+++||||||+|||++.++.+||+
T Consensus        93 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH---~~~iiHrDlkp~NIL~~~~~~~kl~  169 (309)
T d1fvra_          93 APHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIA  169 (309)
T ss_dssp             CTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEEC
T ss_pred             cCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhh---cCCccccccccceEEEcCCCceEEc
Confidence            999999999943210         0123567999999999999999999999   8999999999999999999999999


Q ss_pred             ecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCC
Q 044211          185 DFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSC  250 (292)
Q Consensus       185 Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
                      |||+|+.......  .....||..|++|+.....           |++  ||+ |..+|+ ......++++....+.++.
T Consensus       170 DfG~a~~~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~-~~~~~~~~~~~i~~~~~~~  246 (309)
T d1fvra_         170 DFGLSRGQEVYVK--KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY-CGMTCAELYEKLPQGYRLE  246 (309)
T ss_dssp             CTTCEESSCEECC--C----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTT-TTCCHHHHHHHGGGTCCCC
T ss_pred             ccccccccccccc--ccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCC-CCCCHHHHHHHHHhcCCCC
Confidence            9999976543222  2345678888776655433           888  888 554444 4444455544444443332


Q ss_pred             CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          251 SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       251 ~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                       .+..+++.+.+||.+||+.||++|| +.||++.|+.+.+.
T Consensus       247 -~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~  286 (309)
T d1fvra_         247 -KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  286 (309)
T ss_dssp             -CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             -CCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence             2347788999999999999999999 99999999997653

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-42  Score=293.49  Aligned_cols=245  Identities=17%  Similarity=0.193  Sum_probs=189.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+....  ...+++.||||+++... ......+.+|+.++++++||||++++|++...+..++||||+++
T Consensus        30 ~G~fG~Vy~a~~~~~~--~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lv~e~~~~  107 (308)
T d1p4oa_          30 QGSFGMVYEGVAKGVV--KDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTR  107 (308)
T ss_dssp             ECSSSEEEEEEEEEEE--TTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             eCCCeEEEEEEECCcc--cCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCceeEEEeecCC
Confidence            9999999999873100  00145789999997643 33445689999999999999999999999999999999999999


Q ss_pred             CChhHHhhhhC---CCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          117 GSLADRIRIHH---TPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~---~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      |+|.+++..+.   ........+++..+..++.|++.||.|||   ..+|+||||||+|||++.++++||+|||+|+...
T Consensus       108 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH---~~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~  184 (308)
T d1p4oa_         108 GDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIY  184 (308)
T ss_dssp             CBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGG
T ss_pred             CCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeeceEcCCceeecCCceEEEeecccceecc
Confidence            99999985431   11123356789999999999999999999   8999999999999999999999999999998775


Q ss_pred             CCCcc-chhhhhcccccccccccC------CC-----CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHH
Q 044211          194 EGETH-ISELLSGLRAFDLARLNE------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQ  258 (292)
Q Consensus       194 ~~~~~-~~~~~~g~~~y~~~~~~~------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (292)
                      ..... ......||+.|++|+...      ++     |++  ||+ ++..|+. .....+.+.....+..+. .+..+++
T Consensus       185 ~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~-~~~~~~~~~~i~~~~~~~-~p~~~~~  262 (308)
T d1p4oa_         185 ETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQ-GLSNEQVLRFVMEGGLLD-KPDNCPD  262 (308)
T ss_dssp             GGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTT-TSCHHHHHHHHHTTCCCC-CCTTCCH
T ss_pred             CCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHhCCCCC-CcccchH
Confidence            43332 234456889998877543      22     888  899 6554443 334444444333433322 2246778


Q ss_pred             HHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          259 AFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       259 ~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+.+||.+||+.||++|| +.+|++.|++..+
T Consensus       263 ~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         263 MLFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            999999999999999999 9999999987643

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-41  Score=291.79  Aligned_cols=217  Identities=16%  Similarity=0.214  Sum_probs=180.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|....       +++.||||.++..   .......+.+|+.+|++++||||+++++++.+.+.+++||||+
T Consensus        15 ~G~fg~V~~~~~~~-------~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ey~   87 (337)
T d1o6la_          15 KGTFGKVILVREKA-------TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYA   87 (337)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cCcCeEEEEEEECC-------CCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccceecc
Confidence            89999999999876       8999999998643   2334577899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|.+++.       ....+++..+..++.|++.||.|||   +.+|+||||||+|||++++|.+||+|||+|+....
T Consensus        88 ~gg~L~~~~~-------~~~~~~e~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~  157 (337)
T d1o6la_          88 NGGELFFHLS-------RERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS  157 (337)
T ss_dssp             TTCBHHHHHH-------HHSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred             CCCchhhhhh-------cccCCcHHHHHHHHHHHhhhhhhhh---hcCccccccCHHHeEecCCCCEEEeeccccccccc
Confidence            9999999994       3456899999999999999999999   89999999999999999999999999999987654


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ... .....+||+.|++||+....           ||+  ||+ |+. |+.. .....+......+....+.  ..++.+
T Consensus       158 ~~~-~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~-pf~~-~~~~~~~~~i~~~~~~~p~--~~s~~~  232 (337)
T d1o6la_         158 DGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL-PFYN-QDHERLFELILMEEIRFPR--TLSPEA  232 (337)
T ss_dssp             TTC-CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSC-SSCC-SSHHHHHHHHHHCCCCCCT--TSCHHH
T ss_pred             CCc-ccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCC-CCCC-cCHHHHHHHHhcCCCCCCc--cCCHHH
Confidence            332 23457899999999887644           999  888 654 3332 3334444444444444433  677889


Q ss_pred             HHHHhHhcCCCCCCCC
Q 044211          261 AHLIFECVNESPVDRP  276 (292)
Q Consensus       261 ~~li~~Cl~~dP~~RP  276 (292)
                      .+||.+||+.||++||
T Consensus       233 ~dli~~~L~~dP~~R~  248 (337)
T d1o6la_         233 KSLLAGLLKKDPKQRL  248 (337)
T ss_dssp             HHHHHHHTCSSTTTST
T ss_pred             HHHHHhhccCCchhhc
Confidence            9999999999999999

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-41  Score=287.36  Aligned_cols=225  Identities=16%  Similarity=0.176  Sum_probs=179.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC------cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK------PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||+||+|.+..       +|+.||||+++...      ....+.+.+|+.+|++++||||+++++++.+.+..++||
T Consensus        20 ~G~fg~Vy~~~~~~-------~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~   92 (293)
T d1jksa_          20 SGQFAVVKKCREKS-------TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILIL   92 (293)
T ss_dssp             ECSSEEEEEEEETT-------TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            89999999999875       89999999986431      123567999999999999999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC----ceEEeecc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN----VAKLFDFS  187 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~----~~kl~Dfg  187 (292)
                      |||++|+|.+++..       ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++    .+||+|||
T Consensus        93 E~~~gg~L~~~i~~-------~~~l~~~~~~~~~~qi~~al~yLH---~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG  162 (293)
T d1jksa_          93 ELVAGGELFDFLAE-------KESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFG  162 (293)
T ss_dssp             ECCCSCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSSSSCCEEECCCT
T ss_pred             EcCCCccccchhcc-------ccccchhHHHHHHHHHHHHHHhhh---hcceeecccccceEEEecCCCcccceEecchh
Confidence            99999999999943       346999999999999999999999   89999999999999999776    49999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccchhhhcccccccCCCCCC--
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDRSCSG--  252 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  252 (292)
                      +|........  .....||+.|++||+....           ||+  ||+....|+... ...+.+..........+.  
T Consensus       163 ~a~~~~~~~~--~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~-~~~~~~~~i~~~~~~~~~~~  239 (293)
T d1jksa_         163 LAHKIDFGNE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-TKQETLANVSAVNYEFEDEY  239 (293)
T ss_dssp             TCEECTTSCB--CSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-SHHHHHHHHHTTCCCCCHHH
T ss_pred             hhhhcCCCcc--ccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCC-CHHHHHHHHHhcCCCCCchh
Confidence            9987754332  2345789999888866433           998  888333444332 223333333333322221  


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +...++.+.+||.+||+.||++|| +.|+++
T Consensus       240 ~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         240 FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             cCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            124567899999999999999999 999986

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-41  Score=285.80  Aligned_cols=233  Identities=18%  Similarity=0.233  Sum_probs=172.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHH--HHHHHHhcCCCCccceeeeeecCC----cceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCIN--NIVYASQMIHRCIFKLIGCCLETQ----IPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~--e~~~l~~l~h~niv~~~~~~~~~~----~~~lv~  111 (292)
                      +|+||.||+|++         +|+.||||+++...   ...+..  |+..++.++||||++++|++...+    .+++||
T Consensus        13 ~G~fg~Vy~~~~---------~g~~vAvK~~~~~~---~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~   80 (303)
T d1vjya_          13 KGRFGEVWRGKW---------RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             CCSSSEEEEEEE---------TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             eCCCeEEEEEEE---------CCEEEEEEEECccc---hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEE
Confidence            899999999998         88999999996542   333434  455556789999999999998654    478999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCcccCCCCCCceEecCCCceEEeec
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGF-----PRPVIFRDFKLSNILFNEENVAKLFDF  186 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~-----~~~i~H~dlk~~nili~~~~~~kl~Df  186 (292)
                      ||+++|+|.++++        ...+++..++.++.|+|.||.|+|+..     .++|+||||||+||||+.++.+||+||
T Consensus        81 Ey~~~g~L~~~l~--------~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DF  152 (303)
T d1vjya_          81 DYHEHGSLFDYLN--------RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  152 (303)
T ss_dssp             ECCTTCBHHHHHH--------HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCC
T ss_pred             ecccCCCHHHHHh--------cCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEec
Confidence            9999999999994        235899999999999999999999421     269999999999999999999999999


Q ss_pred             ccccccCCCCcc---chhhhhcccccccccccCC------------C-----CeE--EEc-cchhhhhhcc---------
Q 044211          187 SFSISIPEGETH---ISELLSGLRAFDLARLNED------------D-----GYV--VLL-DHIKKYFEED---------  234 (292)
Q Consensus       187 g~a~~~~~~~~~---~~~~~~g~~~y~~~~~~~~------------~-----Gvi--el~-~~~~~~~~~~---------  234 (292)
                      |++.........   ......||+.|++||+...            +     |++  ||+ |..+......         
T Consensus       153 Gl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~  232 (303)
T d1vjya_         153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV  232 (303)
T ss_dssp             TTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTS
T ss_pred             CccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcc
Confidence            999877543322   2345679999999887432            2     988  888 5432111000         


Q ss_pred             ----chhhh----cccccccCCCC-CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhhc
Q 044211          235 ----RLNEI----IDPLIMGDRSC-SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVCS  290 (292)
Q Consensus       235 ----~~~~~----~~~~~~~~~~~-~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~~  290 (292)
                          .....    .........+. ....+++..+.+|+.+||+.||++|| +.||++.|+++.+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         233 PSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence                00001    11111111111 01135677899999999999999999 99999999998864

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-41  Score=286.61  Aligned_cols=220  Identities=16%  Similarity=0.261  Sum_probs=180.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||+||+|.+..       +|+.||||+++..   .....+.+.+|+.++++++||||+++++++..++.+++||||+
T Consensus        14 ~G~fg~Vy~a~~~~-------~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~   86 (316)
T d1fota_          14 TGSFGRVHLIRSRH-------NGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYI   86 (316)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCC
T ss_pred             cCcCcEEEEEEECC-------CCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEeeec
Confidence            89999999999865       8999999998642   2334577999999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      ++|+|..++.       ....+++..+..++.||+.||.|||   +.+|+||||||+|||++.+|.+||+|||+|+....
T Consensus        87 ~gg~l~~~~~-------~~~~~~~~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~  156 (316)
T d1fota_          87 EGGELFSLLR-------KSQRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD  156 (316)
T ss_dssp             CSCBHHHHHH-------HTSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSS
T ss_pred             CCcccccccc-------ccccccccHHHHHHHHHHHhhhhhc---cCcEEccccCchheeEcCCCCEEEecCccceEecc
Confidence            9999999993       4556888999999999999999999   99999999999999999999999999999988754


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ..    ....||+.|++||.....           ||+  ||+ |+ .|+.. ....+.+.....+....+.  ..++.+
T Consensus       157 ~~----~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~-~Pf~~-~~~~~~~~~i~~~~~~~p~--~~s~~~  228 (316)
T d1fota_         157 VT----YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGY-TPFYD-SNTMKTYEKILNAELRFPP--FFNEDV  228 (316)
T ss_dssp             CB----CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSS-CTTCC-SSHHHHHHHHHHCCCCCCT--TSCHHH
T ss_pred             cc----ccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCC-CCCCC-cCHHHHHHHHHcCCCCCCC--CCCHHH
Confidence            32    346799999888876433           999  888 64 34433 3334444444444444333  567789


Q ss_pred             HHHHhHhcCCCCCCC-----C-HHHHHH
Q 044211          261 AHLIFECVNESPVDR-----P-MVDVAK  282 (292)
Q Consensus       261 ~~li~~Cl~~dP~~R-----P-~~el~~  282 (292)
                      .+++.+||+.||.+|     | +.++++
T Consensus       229 ~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         229 KDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             HHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHhhhCHHhccccchhhHHHHHc
Confidence            999999999999999     5 666664

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.4e-41  Score=282.60  Aligned_cols=226  Identities=17%  Similarity=0.231  Sum_probs=180.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc---------hHHHHHHHHHHHHhcC-CCCccceeeeeecCCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR---------TYDCCINNIVYASQMI-HRCIFKLIGCCLETQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~---------~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~  107 (292)
                      +|+||+||+|....       +++.||||+++.....         ..+.+.+|+.++++++ ||||+++++++.+++..
T Consensus        13 ~G~~g~V~~~~~~~-------~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~   85 (277)
T d1phka_          13 RGVSSVVRRCIHKP-------TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFF   85 (277)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             cCcCeEEEEEEECC-------CCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCcce
Confidence            89999999999865       8999999998654221         1235889999999997 99999999999999999


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      |+||||+++|+|.++++.       ...+++..+..++.||+.||+|||   +.+|+||||||+|||++.++.+||+|||
T Consensus        86 ~ivmE~~~~g~L~~~l~~-------~~~l~e~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~~kl~DFG  155 (277)
T d1phka_          86 FLVFDLMKKGELFDYLTE-------KVTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFG  155 (277)
T ss_dssp             EEEEECCTTCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             EEEEEcCCCchHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHH---HcCCcccccccceEEEcCCCCeEEccch
Confidence            999999999999999953       346999999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCccchhhhhccccccccccc------------CCC-----CeE--EEccchhhhhhccchhhhcccccccCC
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLN------------EDD-----GYV--VLLDHIKKYFEEDRLNEIIDPLIMGDR  248 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~------------~~~-----Gvi--el~~~~~~~~~~~~~~~~~~~~~~~~~  248 (292)
                      +++.+.....  .....||..|.+|+..            .++     |++  ||+.+..|+... ...........+..
T Consensus       156 ~a~~~~~~~~--~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~-~~~~~~~~i~~~~~  232 (277)
T d1phka_         156 FSCQLDPGEK--LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR-KQMLMLRMIMSGNY  232 (277)
T ss_dssp             TCEECCTTCC--BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-SHHHHHHHHHHTCC
T ss_pred             heeEccCCCc--eeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCC-CHHHHHHHHHhCCC
Confidence            9988754332  2345788888666543            222     999  888333444433 22333333333332


Q ss_pred             --CCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          249 --SCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       249 --~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                        +.+.....++.+.+|+.+||+.||++|| +.|+++.
T Consensus       233 ~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h  270 (277)
T d1phka_         233 QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  270 (277)
T ss_dssp             CCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             CCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence              2223346788999999999999999999 9998763

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=284.35  Aligned_cols=224  Identities=13%  Similarity=0.175  Sum_probs=179.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccCCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYINCG  117 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~g  117 (292)
                      +|+||+||+|.+..       +++.||+|.++.... ....+.+|+.+|++++||||+++++++..++.+|+|||||++|
T Consensus        15 ~G~fg~Vy~~~~~~-------~~~~~AiK~i~~~~~-~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg   86 (321)
T d1tkia_          15 RGEFGIVHRCVETS-------SKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGL   86 (321)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEECCCTH-HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCC
T ss_pred             cCCCeEEEEEEECC-------CCcEEEEEEEcCCcc-cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCCCC
Confidence            89999999999875       899999999976532 3356889999999999999999999999999999999999999


Q ss_pred             ChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC--CceEEeecccccccCCC
Q 044211          118 SLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE--NVAKLFDFSFSISIPEG  195 (292)
Q Consensus       118 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~--~~~kl~Dfg~a~~~~~~  195 (292)
                      +|.+++.      ..+..+++..+..|+.||+.||.|||   +.+|+||||||+|||++.+  +.+||+|||++......
T Consensus        87 ~L~~~i~------~~~~~l~e~~~~~i~~qi~~al~yLH---~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~  157 (321)
T d1tkia_          87 DIFERIN------TSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG  157 (321)
T ss_dssp             BHHHHHT------SSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT
T ss_pred             cHHHHHH------hcCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCcccccccceeecCCCceEEEEcccchhhccccC
Confidence            9999993      23457999999999999999999999   8999999999999999854  58999999999877543


Q ss_pred             CccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC--chHHHHH
Q 044211          196 ETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG--NQQQLQA  259 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  259 (292)
                      ..  .....+++.|++++.....           ||+  +|+ |. .||.. ....+.+.....+....+.  +...++.
T Consensus       158 ~~--~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~-~Pf~~-~~~~~~~~~i~~~~~~~~~~~~~~~s~~  233 (321)
T d1tkia_         158 DN--FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGI-NPFLA-ETNQQIIENIMNAEYTFDEEAFKEISIE  233 (321)
T ss_dssp             CE--EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSS-CTTCC-SSHHHHHHHHHHTCCCCCHHHHTTSCHH
T ss_pred             Cc--ccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCC-CCCCC-CCHHHHHHHHHhCCCCCChhhccCCCHH
Confidence            32  3445688899877765433           988  888 64 34433 2333333444444433322  1235678


Q ss_pred             HHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          260 FAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                      +.+|+.+||+.||++|| +.|+++
T Consensus       234 ~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         234 AMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHccCChhHCcCHHHHhc
Confidence            99999999999999999 999987

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.9e-41  Score=281.43  Aligned_cols=233  Identities=16%  Similarity=0.224  Sum_probs=177.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHHHHHHHHhcCCCCccceeeeeecCCc----ceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQI----PILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~----~~lv  110 (292)
                      +|+||.||+|.+..       +++.||||.++...   ......+.+|+.++++++||||+++++++...+.    +|+|
T Consensus        17 ~G~fg~Vy~a~~~~-------~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lv   89 (277)
T d1o6ya_          17 FGGMSEVHLARDLR-------LHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIV   89 (277)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEE
Confidence            89999999999865       89999999997542   2334578999999999999999999999986543    7899


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      |||+++|+|.+++.       ....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++..+++|||.+.
T Consensus        90 mE~~~g~~L~~~~~-------~~~~l~~~~~~~i~~qi~~al~~lH---~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~  159 (277)
T d1o6ya_          90 MEYVDGVTLRDIVH-------TEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIAR  159 (277)
T ss_dssp             EECCCEEEHHHHHH-------HHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTSCEEECCCTTCE
T ss_pred             EECCCCCEehhhhc-------ccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCccccCcccccCccccceeehhhhhh
Confidence            99999999999884       3456999999999999999999999   8999999999999999999999999999987


Q ss_pred             ccCCCC--ccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCC--C
Q 044211          191 SIPEGE--THISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCS--G  252 (292)
Q Consensus       191 ~~~~~~--~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  252 (292)
                      ......  ........||+.|++||.....           ||+  ||+ |+ .|+... ...+.....+...+.++  .
T Consensus       160 ~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~-~Pf~~~-~~~~~~~~~~~~~~~~~~~~  237 (277)
T d1o6ya_         160 AIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE-PPFTGD-SPVSVAYQHVREDPIPPSAR  237 (277)
T ss_dssp             ECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS-CSCCCS-SHHHHHHHHHHCCCCCGGGT
T ss_pred             hhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCC-CCCCCc-CHHHHHHHHHhcCCCCCchh
Confidence            654322  2234456799999998876533           999  888 64 344332 22222222333332221  1


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC--HHHHHHHHHHhhh
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP--MVDVAKKTQANVC  289 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP--~~el~~~L~~l~~  289 (292)
                      ....++.+.+++.+||+.||++||  +.++.+.|..++.
T Consensus       238 ~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~n  276 (277)
T d1o6ya_         238 HEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN  276 (277)
T ss_dssp             SSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHC
T ss_pred             ccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHhC
Confidence            235677899999999999999999  7889999998864

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-40  Score=286.09  Aligned_cols=220  Identities=16%  Similarity=0.208  Sum_probs=180.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      +|+||.||+|.+..       +|+.||||+++..   .....+.+.+|+.+|+.++||||+++++++......++|+||+
T Consensus        51 ~G~fg~Vy~a~~~~-------~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~e~~  123 (350)
T d1rdqe_          51 TGSFGRVMLVKHKE-------SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV  123 (350)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cCcCcEEEEEEECC-------CCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccccccc
Confidence            99999999999875       8999999998642   2234567899999999999999999999999999999999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPE  194 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~  194 (292)
                      .+|+|.+++.+       ...+++..+..++.||+.||.|||   +.+|+||||||+|||++.+|.+||+|||+|+.+..
T Consensus       124 ~~g~l~~~l~~-------~~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~  193 (350)
T d1rdqe_         124 AGGEMFSHLRR-------IGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG  193 (350)
T ss_dssp             TTCBHHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             cccchhhhHhh-------cCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCcCCHHHcccCCCCCEEeeeceeeeeccc
Confidence            99999999943       346899999999999999999999   89999999999999999999999999999998754


Q ss_pred             CCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHHH
Q 044211          195 GETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQAF  260 (292)
Q Consensus       195 ~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (292)
                      ..    ....||+.|++||+....           ||+  ||+ |. .||.. ......+.....+....+  ...++.+
T Consensus       194 ~~----~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~-~Pf~~-~~~~~~~~~i~~~~~~~p--~~~s~~~  265 (350)
T d1rdqe_         194 RT----WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGY-PPFFA-DQPIQIYEKIVSGKVRFP--SHFSSDL  265 (350)
T ss_dssp             CB----CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSS-CSSCC-SSHHHHHHHHHHCCCCCC--TTCCHHH
T ss_pred             cc----ccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCC-CCCCC-cCHHHHHHHHhcCCCCCC--ccCCHHH
Confidence            32    346799999988865433           999  888 64 34433 333344444444443333  3677889


Q ss_pred             HHHHhHhcCCCCCCC-----C-HHHHHH
Q 044211          261 AHLIFECVNESPVDR-----P-MVDVAK  282 (292)
Q Consensus       261 ~~li~~Cl~~dP~~R-----P-~~el~~  282 (292)
                      .+|+.+||+.||.+|     | +.++++
T Consensus       266 ~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         266 KDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             HHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHhhhCHHhccccccccHHHHHc
Confidence            999999999999999     6 677765

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-40  Score=287.03  Aligned_cols=217  Identities=14%  Similarity=0.146  Sum_probs=169.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC---cchHHHHHH---HHHHHHhcCCCCccceeeeeecCCcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK---PRTYDCCIN---NIVYASQMIHRCIFKLIGCCLETQIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~---e~~~l~~l~h~niv~~~~~~~~~~~~~lv~  111 (292)
                      +|+||.||+|.+..       +|+.||||++....   ......+.+   ++.+++.++||||+++++++..++.+++||
T Consensus        14 ~G~fg~Vy~~~~~~-------t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~ivm   86 (364)
T d1omwa3          14 RGGFGEVYGCRKAD-------TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFIL   86 (364)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEEEEE
Confidence            89999999999875       89999999986321   111223334   466777778999999999999999999999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      ||+++|+|.+++.+       ...+++..+..++.||+.||.|||   ..+|+||||||+|||++.+|.+||+|||+|+.
T Consensus        87 E~~~gg~L~~~l~~-------~~~~~e~~~~~~~~qi~~aL~ylH---~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~  156 (364)
T d1omwa3          87 DLMNGGDLHYHLSQ-------HGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACD  156 (364)
T ss_dssp             CCCCSCBHHHHHHH-------HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSSSCEEECCCTTCEE
T ss_pred             EecCCCcHHHHHHh-------cccccHHHHHHHHHHHHHHHHHHH---HCCccceeeccceeEEcCCCcEEEeeeceeee
Confidence            99999999999953       356889999999999999999999   89999999999999999999999999999987


Q ss_pred             cCCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhcc--chhhhcccccccCCCCCCch
Q 044211          192 IPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEED--RLNEIIDPLIMGDRSCSGNQ  254 (292)
Q Consensus       192 ~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  254 (292)
                      +....   .....||+.|++||+....            ||+  ||+ |+. ||....  ....+...........+  .
T Consensus       157 ~~~~~---~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~-Pf~~~~~~~~~~~~~~~~~~~~~~~--~  230 (364)
T d1omwa3         157 FSKKK---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHS-PFRQHKTKDKHEIDRMTLTMAVELP--D  230 (364)
T ss_dssp             CSSSC---CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSC-SSCSSCSSCHHHHHHHSSSCCCCCC--S
T ss_pred             cCCCc---ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHhcccCCCCCC--C
Confidence            75433   2346799999888875432            999  888 654 443321  11122222222222222  3


Q ss_pred             HHHHHHHHHHhHhcCCCCCCCC-H
Q 044211          255 QQLQAFAHLIFECVNESPVDRP-M  277 (292)
Q Consensus       255 ~~~~~l~~li~~Cl~~dP~~RP-~  277 (292)
                      ..++.+.+||.+||+.||++|| +
T Consensus       231 ~~s~~~~~li~~~L~~dP~~R~t~  254 (364)
T d1omwa3         231 SFSPELRSLLEGLLQRDVNRRLGC  254 (364)
T ss_dssp             SSCHHHHHHHHHHTCSSTTTSTTT
T ss_pred             CCCHHHHHHHHHHcccCHHHhCCC
Confidence            5678899999999999999999 5

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-40  Score=279.53  Aligned_cols=226  Identities=18%  Similarity=0.158  Sum_probs=170.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc-----hHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR-----TYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~-----~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||+||+|.+..       +++.||||.++.....     ..+.+.+|+.++++++||||+++++++..++..++|||
T Consensus         8 ~G~fg~Vy~~~~~~-------~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE   80 (299)
T d1ua2a_           8 EGQFATVYKARDKN-------TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFD   80 (299)
T ss_dssp             EETTEEEEEEECSS-------CCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEE
T ss_pred             cCcCeEEEEEEECC-------CCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhh
Confidence            79999999999875       8999999998653221     22468899999999999999999999999999999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+.++++..+.       .....+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+||+|||+|...
T Consensus        81 ~~~~~~~~~~~-------~~~~~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~  150 (299)
T d1ua2a_          81 FMETDLEVIIK-------DNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSF  150 (299)
T ss_dssp             CCSEEHHHHHT-------TCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTT
T ss_pred             hhcchHHhhhh-------hcccCCCHHHHHHHHHHHHHHHHHhh---ccceecccCCcceEEecCCCccccccCcccccc
Confidence            99987766665       34567899999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhh---hcc-------------
Q 044211          193 PEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNE---IID-------------  241 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~---~~~-------------  241 (292)
                      ..... ......||+.|++||+....            ||+  ||+ |. .++........   +..             
T Consensus       151 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~-~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~  228 (299)
T d1ua2a_         151 GSPNR-AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRV-PFLPGDSDLDQLTRIFETLGTPTEEQWPDM  228 (299)
T ss_dssp             TSCCC-CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSS-CSSCCSSHHHHHHHHHHHHCCCCTTTSSST
T ss_pred             CCCcc-cccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCc-CCCCCCCHHHHHHHHHHhcCCCChhhccch
Confidence            54332 23345789999988864321            999  888 64 33332211110   000             


Q ss_pred             -----cccccCCCCCC----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          242 -----PLIMGDRSCSG----NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       242 -----~~~~~~~~~~~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                           .......+...    ....++.+.+|+.+||+.||++|| +.|+++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         229 CSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             TSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             hccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence                 00000000000    013356899999999999999999 999986

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-39  Score=278.60  Aligned_cols=224  Identities=16%  Similarity=0.247  Sum_probs=174.2

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhc-CCCCccceeeeeec----CCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQM-IHRCIFKLIGCCLE----TQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~~~~~~~~----~~~~~lv~e  112 (292)
                      +|+||+||+|.+..       +++.||||+++..     ..+.+|+.++.++ +||||+++++++.+    ...+|+|||
T Consensus        22 ~G~fg~Vy~a~~~~-------~~~~vAiK~i~~~-----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmE   89 (335)
T d2ozaa1          22 LGINGKVLQIFNKR-------TQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME   89 (335)
T ss_dssp             ECSSCEEEEEEETT-------TCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             eccCeEEEEEEECC-------CCCEEEEEEECCc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEE
Confidence            89999999999865       8999999999754     4577899987665 89999999999865    456899999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC---CCceEEeecccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE---ENVAKLFDFSFS  189 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~---~~~~kl~Dfg~a  189 (292)
                      ||++|+|.+++.+.     ....+++..+..|+.|++.||.|||   +.+|+||||||+|||++.   ++.+||+|||+|
T Consensus        90 y~~gg~L~~~i~~~-----~~~~l~e~~~~~i~~qi~~al~ylH---~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a  161 (335)
T d2ozaa1          90 CLDGGELFSRIQDR-----GDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  161 (335)
T ss_dssp             CCCSEEHHHHHHSC-----SCCCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             CCCCCcHHHHHHhc-----CCCCcCHHHHHHHHHHHHHHHHHHH---HcCCcccccccccccccccccccccccccccee
Confidence            99999999999422     2457999999999999999999999   899999999999999985   467999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCCC-----------CeE--EEccchhhhhhccch---hhhcccccccCCCCCC-
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLLDHIKKYFEEDRL---NEIIDPLIMGDRSCSG-  252 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-  252 (292)
                      +.......  .....||+.|++|++....           ||+  +|+....||......   ..+......+....+. 
T Consensus       162 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~  239 (335)
T d2ozaa1         162 KETTSHNS--LTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNP  239 (335)
T ss_dssp             EECCCCCC--CCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTT
T ss_pred             eeccCCCc--cccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCc
Confidence            87755433  3456799999999876533           999  888334444433221   1122222233333222 


Q ss_pred             -chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          253 -NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       253 -~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                       ....++.+.+||.+||+.||++|| +.|+++.
T Consensus       240 ~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  272 (335)
T d2ozaa1         240 EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  272 (335)
T ss_dssp             HHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             ccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence             235678899999999999999999 9999873

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-40  Score=282.25  Aligned_cols=223  Identities=17%  Similarity=0.271  Sum_probs=177.7

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC---CcchHHHHHHHHHHHH-hcCCCCccceeeeeecCCcceEEEec
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES---KPRTYDCCINNIVYAS-QMIHRCIFKLIGCCLETQIPILVFEY  113 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~~e~~~l~-~l~h~niv~~~~~~~~~~~~~lv~e~  113 (292)
                      +|+||+||+|.+..       +++.||||.++..   .....+.+..|..++. .++||||+++++++..++..|+||||
T Consensus        12 ~G~fg~Vy~~~~~~-------t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmEy   84 (320)
T d1xjda_          12 KGSFGKVFLAEFKK-------TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEY   84 (320)
T ss_dssp             ECSSSEEEEEEETT-------TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             cCCCcEEEEEEECC-------CCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEee
Confidence            89999999999976       8999999999642   2233456677777665 68999999999999999999999999


Q ss_pred             cCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccC
Q 044211          114 INCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIP  193 (292)
Q Consensus       114 ~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~  193 (292)
                      +++|+|.+++..       ...+++..+..++.||+.||.|||   +.+++||||||+|||+++++.+||+|||+++...
T Consensus        85 ~~~g~L~~~i~~-------~~~~~e~~~~~~~~qi~~al~ylH---~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~  154 (320)
T d1xjda_          85 LNGGDLMYHIQS-------CHKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENM  154 (320)
T ss_dssp             CTTCBHHHHHHH-------HSSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred             cCCCcHHHHhhc-------cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCcccceeecCCCceeccccchhhhcc
Confidence            999999999953       346899999999999999999999   8999999999999999999999999999998665


Q ss_pred             CCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCCchHHHHH
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSGNQQQLQA  259 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                      .... ......||+.|++||+....           ||+  ||+ |+ .|+. .......+.....+.+..+  ...++.
T Consensus       155 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~-~PF~-~~~~~~~~~~i~~~~~~~p--~~~s~~  229 (320)
T d1xjda_         155 LGDA-KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ-SPFH-GQDEEELFHSIRMDNPFYP--RWLEKE  229 (320)
T ss_dssp             CTTC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSS-CSSC-CSSHHHHHHHHHHCCCCCC--TTSCHH
T ss_pred             cccc-cccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCC-CCCC-CCCHHHHHHHHHcCCCCCC--ccCCHH
Confidence            4332 23446799999888766543           999  888 64 3443 2333334443344444333  356788


Q ss_pred             HHHHHhHhcCCCCCCCC-HH-HHHH
Q 044211          260 FAHLIFECVNESPVDRP-MV-DVAK  282 (292)
Q Consensus       260 l~~li~~Cl~~dP~~RP-~~-el~~  282 (292)
                      +.+|+.+||+.||++|| +. ++++
T Consensus       230 ~~dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         230 AKDLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             HHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             HHHHHHHhcccCCCCCcCHHHHHHh
Confidence            99999999999999999 85 6653

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-39  Score=270.82  Aligned_cols=228  Identities=15%  Similarity=0.139  Sum_probs=171.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+|.+..       +++.||||.++...  ......+.+|+.++++++||||+++++++..++..++||||+.
T Consensus        12 ~G~fg~Vy~~~~~~-------~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~   84 (298)
T d1gz8a_          12 EGTYGVVYKARNKL-------TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH   84 (298)
T ss_dssp             ECSSSEEEEEEETT-------TCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             cCcCeEEEEEEECC-------CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEeecC
Confidence            89999999999865       89999999996542  2335678999999999999999999999999999999999998


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      + ++.+++..     .....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+|+.....
T Consensus        85 ~-~~~~~~~~-----~~~~~l~e~~~~~~~~qil~~L~yLH---~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~  155 (298)
T d1gz8a_          85 Q-DLKKFMDA-----SALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP  155 (298)
T ss_dssp             E-EHHHHHHH-----TTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCC
T ss_pred             C-chhhhhhh-----hcccCCCHHHHHHHHHHHHHHHHHhh---cCCEEccccCchheeecccCcceeccCCcceeccCC
Confidence            5 55555521     23567999999999999999999999   899999999999999999999999999999877543


Q ss_pred             CccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhh-------------cccc----
Q 044211          196 ETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEI-------------IDPL----  243 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~-------------~~~~----  243 (292)
                      . .......||+.|++|+.....            ||+  +|+ |+. |+.........             ....    
T Consensus       156 ~-~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~-Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  233 (298)
T d1gz8a_         156 V-RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRA-LFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSM  233 (298)
T ss_dssp             S-BCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGS
T ss_pred             c-ccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCC-CCCCCCHHHHHHHHHHhcCCCchhhccccccc
Confidence            3 234456789999888753322            999  888 654 33221110000             0000    


Q ss_pred             --cccCCCC-C--C----chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          244 --IMGDRSC-S--G----NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       244 --~~~~~~~-~--~----~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                        .....+. .  .    ....++.+.+|+.+||+.||++|| +.|+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H  283 (298)
T d1gz8a_         234 PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH  283 (298)
T ss_dssp             TTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence              0000000 0  0    012346789999999999999999 9999875

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.6e-38  Score=265.95  Aligned_cols=225  Identities=17%  Similarity=0.112  Sum_probs=169.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+|.+.        +++.||||.++...  ......+.+|+.+|++++||||+++++++...+..++++||+.
T Consensus        12 ~G~fg~Vy~~~~~--------~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~   83 (286)
T d1ob3a_          12 EGTYGVVYKAQNN--------YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLD   83 (286)
T ss_dssp             EETTEEEEEEEET--------TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCS
T ss_pred             cCCCcEEEEEEeC--------CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeeh
Confidence            8999999999986        88999999996643  2335789999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      ++.+..+.       .....+++..+..++.||+.||+|||   ..+|+||||||+|||++.++.+||+|||.|......
T Consensus        84 ~~~~~~~~-------~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~  153 (286)
T d1ob3a_          84 QDLKKLLD-------VCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP  153 (286)
T ss_dssp             EEHHHHHH-------TSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-
T ss_pred             hhhHHHHH-------hhcCCcchhhhHHHHHHHHHHHHHhc---cCcEEecCCCCceeeEcCCCCEEecccccceecccC
Confidence            86666666       34577999999999999999999999   899999999999999999999999999999877543


Q ss_pred             CccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhh---h------------------
Q 044211          196 ETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNE---I------------------  239 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~---~------------------  239 (292)
                      .. ......|++.|.+|+.....            |++  ||+ |+. |+........   +                  
T Consensus       154 ~~-~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~-pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  231 (286)
T d1ob3a_         154 VR-KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTP-LFPGVSEADQLMRIFRILGTPNSKNWPNVTEL  231 (286)
T ss_dssp             ---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGS
T ss_pred             cc-ccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCC-CCCCCCHHHHHHHHHHhhCCCChhhccchhhh
Confidence            32 23445678888777654322            999  888 654 3322111000   0                  


Q ss_pred             --cccccccCCCCC---CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          240 --IDPLIMGDRSCS---GNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       240 --~~~~~~~~~~~~---~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                        .........+.+   .....++.+.+|+.+||+.||++|| ++|+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         232 PKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             TTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence              000000000000   0123466889999999999999999 999975

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-39  Score=270.48  Aligned_cols=215  Identities=19%  Similarity=0.238  Sum_probs=169.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCc------chHHHHHHHHHHHHhcC--CCCccceeeeeecCCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKP------RTYDCCINNIVYASQMI--HRCIFKLIGCCLETQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~e~~~l~~l~--h~niv~~~~~~~~~~~~~l  109 (292)
                      +|+||+||+|.+..       +++.||||.++....      ....++.+|+.++++++  ||||+++++++..++..++
T Consensus        14 ~G~fg~Vy~a~~~~-------~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~l   86 (273)
T d1xwsa_          14 SGGFGSVYSGIRVS-------DNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVL   86 (273)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEE
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEE
Confidence            89999999999875       899999999864211      11234678999999996  8999999999999999999


Q ss_pred             EEeccCC-CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-CCceEEeecc
Q 044211          110 VFEYINC-GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-ENVAKLFDFS  187 (292)
Q Consensus       110 v~e~~~~-gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-~~~~kl~Dfg  187 (292)
                      ||||+.+ +++.++++       ....+++..+..++.|++.||.|||   +.+|+||||||+|||++. ++.+||+|||
T Consensus        87 v~e~~~~~~~l~~~~~-------~~~~l~e~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NIll~~~~~~vkl~DFG  156 (273)
T d1xwsa_          87 ILERPEPVQDLFDFIT-------ERGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFG  156 (273)
T ss_dssp             EEECCSSEEEHHHHHH-------HHCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred             EEEeccCcchHHHHHh-------ccCCCCHHHHHHHHHHHHHHHHHHH---HCCCccccCcccceEEecCCCeEEECccc
Confidence            9999975 67888884       3456999999999999999999999   899999999999999985 4799999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhcccccccCCCCCC
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDPLIMGDRSCSG  252 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (292)
                      +|.......   .....||+.|++||+....            ||+  ||+ |+ .|+.....   +.    .+....+ 
T Consensus       157 ~a~~~~~~~---~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~-~Pf~~~~~---i~----~~~~~~~-  224 (273)
T d1xwsa_         157 SGALLKDTV---YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGD-IPFEHDEE---II----RGQVFFR-  224 (273)
T ss_dssp             TCEECCSSC---BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSS-CSCCSHHH---HH----HCCCCCS-
T ss_pred             cceeccccc---ccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCC-CCCCCchH---Hh----hcccCCC-
Confidence            998764432   2346799999888864211            998  888 54 34433221   11    1111122 


Q ss_pred             chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          253 NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       253 ~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                       ...++++.+|+.+||+.||++|| +.|+++
T Consensus       225 -~~~s~~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         225 -QRVSSECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             -SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -CCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence             24567899999999999999999 999986

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-37  Score=265.62  Aligned_cols=227  Identities=13%  Similarity=0.133  Sum_probs=166.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC-cchHHHHHHHHHHHHhcCCCCccceeeeeecCC----cceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK-PRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ----IPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~----~~~lv~e  112 (292)
                      +|+||+||+|....       +++.||||.++... ....+.+.+|+.+|++++||||+++++++....    ..+++++
T Consensus        18 ~G~fg~Vy~~~~~~-------~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~   90 (345)
T d1pmea_          18 EGAYGMVCSAYDNV-------NKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVT   90 (345)
T ss_dssp             ---CCCEEEEEETT-------TCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEE
T ss_pred             eccCeEEEEEEECC-------CCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEE
Confidence            89999999999865       89999999997643 334567899999999999999999999997643    2356666


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+.+|+|.+++.        ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||+|...
T Consensus        91 ~~~~g~L~~~l~--------~~~l~~~~i~~i~~qil~al~yLH---~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~  159 (345)
T d1pmea_          91 HLMGADLYKLLK--------TQHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVA  159 (345)
T ss_dssp             ECCCEEHHHHHH--------HCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             eecCCchhhhhh--------cCCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCcceEEECCCCCEEEcccCceeec
Confidence            777899999993        235899999999999999999999   899999999999999999999999999999876


Q ss_pred             CCCCcc--chhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhcc--------------
Q 044211          193 PEGETH--ISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIID--------------  241 (292)
Q Consensus       193 ~~~~~~--~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~--------------  241 (292)
                      ......  ......||+.|++|++....            |++  +|+ |+. |+...........              
T Consensus       160 ~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~~  238 (345)
T d1pmea_         160 DPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRP-IFPGKHYLDQLNHILGILGSPSQEDLN  238 (345)
T ss_dssp             CGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHCSCCHHHHH
T ss_pred             cCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCC-CCCCCCHHHHHHHHhhhccCCChhhhh
Confidence            433221  23456689999888865322            888  888 654 3322111000000              


Q ss_pred             -----------cccccCCCCCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 -----------PLIMGDRSCSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 -----------~~~~~~~~~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                 .........+.   ....++.+.+|+.+||+.||++|| +.|+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         239 CIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             TCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                       00000000000   012345789999999999999999 9999874

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=256.18  Aligned_cols=226  Identities=12%  Similarity=0.102  Sum_probs=171.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+||+||+|++..       +++.||||+++..  ......++.+|+.+++.++||||+++++++......++|+|++.
T Consensus        12 ~G~fg~V~~~~~~~-------~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~~   84 (292)
T d1unla_          12 EGTYGTVFKAKNRE-------THEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCD   84 (292)
T ss_dssp             ECSSSEEEEEEETT-------TCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCS
T ss_pred             cCcCeEEEEEEECC-------CCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeecc
Confidence            89999999999876       8999999998654  23345789999999999999999999999999999999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccccccCCC
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISIPEG  195 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~~~~  195 (292)
                      +++|..++.       ....+++..+..++.|++.||+|||   ..+|+||||||+|||++.++.+||+|||.+......
T Consensus        85 ~~~l~~~~~-------~~~~~~~~~~~~~~~q~~~aL~~lH---~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~  154 (292)
T d1unla_          85 QDLKKYFDS-------CNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIP  154 (292)
T ss_dssp             EEHHHHHHH-------TTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSC
T ss_pred             ccccccccc-------cccccchhHHHHHHHHHHHHHHHhh---cCCEeeecccCcccccccCCceeeeecchhhcccCC
Confidence            988888873       4567889999999999999999999   899999999999999999999999999999877543


Q ss_pred             CccchhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhhhccc------------------
Q 044211          196 ETHISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNEIIDP------------------  242 (292)
Q Consensus       196 ~~~~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~~~~~------------------  242 (292)
                      ... .....++..|.+++...       ++     ||+  ||+ |+.+.+ ......+.+..                  
T Consensus       155 ~~~-~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (292)
T d1unla_         155 VRC-YSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF-PGNDVDDQLKRIFRLLGTPTEEQWPSMTK  232 (292)
T ss_dssp             CSC-CCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSC-CCSSHHHHHHHHHHHHCCCCTTTCTTGGG
T ss_pred             Ccc-ceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCC-CCCCHHHHHHHHHhhcCCCChhhhhhhhh
Confidence            322 22334555565554332       22     999  888 655322 11111110000                  


Q ss_pred             --------cc-ccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 --------LI-MGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 --------~~-~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                              .. ............++.+.+|+.+||+.||.+|| +.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         233 LPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             STTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             cccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                    00 00000011124566889999999999999999 999976

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=258.34  Aligned_cols=228  Identities=15%  Similarity=0.120  Sum_probs=165.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeec--------CCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLE--------TQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--------~~~~  107 (292)
                      +|+||+||+|.+..       +++.||||.+...  ......++.+|+.+|++++||||+++++++..        .+..
T Consensus        20 ~G~fg~Vy~a~~~~-------~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~   92 (318)
T d3blha1          20 QGTFGEVFKARHRK-------TGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSI   92 (318)
T ss_dssp             ECSSSEEEEEEETT-------TCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------CE
T ss_pred             cCcCeEEEEEEECC-------CCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCceE
Confidence            99999999999865       8999999998543  33345778999999999999999999999865        3457


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++||||+.++.+....       .....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||
T Consensus        93 ~iv~e~~~~~~~~~~~-------~~~~~~~~~~~~~i~~qil~~l~~lH---~~~ivHrDlKp~NILl~~~~~~kl~dfg  162 (318)
T d3blha1          93 YLVFDFCEHDLAGLLS-------NVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFG  162 (318)
T ss_dssp             EEEEECCCEEHHHHHT-------CTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             EEEEeccCCCccchhh-------hcccccccHHHHHHHHHHHHHHHHhc---cCCEEecCcCchheeecCCCcEEeeecc
Confidence            8999999976665444       35667899999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCcc---chhhhhcccccccccccC-------CC-----CeE--EEc-cchhhhhhccchhh--hcccc----
Q 044211          188 FSISIPEGETH---ISELLSGLRAFDLARLNE-------DD-----GYV--VLL-DHIKKYFEEDRLNE--IIDPL----  243 (292)
Q Consensus       188 ~a~~~~~~~~~---~~~~~~g~~~y~~~~~~~-------~~-----Gvi--el~-~~~~~~~~~~~~~~--~~~~~----  243 (292)
                      ++..+......   ......||+.|++||...       ++     |++  ||+ |+. |+........  .+...    
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~-pf~~~~~~~~~~~i~~~~~~~  241 (318)
T d3blha1         163 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSP-IMQGNTEQHQLALISQLCGSI  241 (318)
T ss_dssp             TCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHCCC
T ss_pred             eeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCC-CCCCCCHHHHHHHHHHhcCCC
Confidence            99876533221   223456899998888542       11     999  888 643 3322111100  00000    


Q ss_pred             ----------------cccCCC-CCCc------hHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          244 ----------------IMGDRS-CSGN------QQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       244 ----------------~~~~~~-~~~~------~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                      +..... ....      ....+.+.+|+.+||+.||++|| +.|+++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         242 TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             CTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             ChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence                            000000 0000      01245678999999999999999 9999863

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=4.9e-36  Score=256.80  Aligned_cols=219  Identities=16%  Similarity=0.176  Sum_probs=166.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeeec--CCcceEEEecc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLE--TQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~--~~~~~lv~e~~  114 (292)
                      +|+||+||+|....       +++.||||+++...   .+++.+|+.+|+.++ ||||+++++++..  ....++||||+
T Consensus        45 ~G~fg~V~~a~~~~-------~~~~vAiK~i~~~~---~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~  114 (328)
T d3bqca1          45 RGKYSEVFEAINIT-------NNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV  114 (328)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEECSSC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECC
T ss_pred             cCcCeEEEEEEECC-------CCCEEEEEEECHHH---HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeec
Confidence            99999999999865       89999999997653   467889999999995 9999999999874  35688999999


Q ss_pred             CCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCC-CceEEeecccccccC
Q 044211          115 NCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEE-NVAKLFDFSFSISIP  193 (292)
Q Consensus       115 ~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~-~~~kl~Dfg~a~~~~  193 (292)
                      .+++|..+.          ..+++..+..++.||+.||.|||   +.+|+||||||+|||++.+ +.+||+|||+|....
T Consensus       115 ~~~~L~~~~----------~~l~e~~i~~i~~qil~aL~~LH---~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~  181 (328)
T d3bqca1         115 NNTDFKQLY----------QTLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH  181 (328)
T ss_dssp             CSCBGGGTT----------TSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCGGGCEECC
T ss_pred             CCCcHHHHh----------cCCCHHHHHHHHHHHHHHHHHHh---hcccccccccccceEEcCCCCeeeecccccceecc
Confidence            999997665          35899999999999999999999   8999999999999999865 469999999998775


Q ss_pred             CCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccc-h---------------------
Q 044211          194 EGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDR-L---------------------  236 (292)
Q Consensus       194 ~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~-~---------------------  236 (292)
                      ....  .....+|+.|++||.....            |++  ||+ |+. |+..... .                     
T Consensus       182 ~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~-pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~  258 (328)
T d3bqca1         182 PGQE--YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKE-PFFHGHDNYDQLVRIAKVLGTEDLYDYIDK  258 (328)
T ss_dssp             TTCC--CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCS-SSSCCSSHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CCCc--ccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCC-CCCCCchhHHHHHHHHHHHCCchhhhhhhh
Confidence            4432  3445688889877764321            888  887 654 2211110 0                     


Q ss_pred             ---------hhhcc----cccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          237 ---------NEIID----PLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       237 ---------~~~~~----~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                               .....    .......+.......++++.+||.+||+.||.+|| +.|+++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         259 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             TTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                     00000    00000111111234567899999999999999999 999986

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-36  Score=261.77  Aligned_cols=222  Identities=14%  Similarity=0.143  Sum_probs=164.6

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhcCCCCccceeeeeecCC------cceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQMIHRCIFKLIGCCLETQ------IPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~------~~~l  109 (292)
                      +|+||+||+|.+..       +++.||||+++..  .....+.+.+|+.+|++++||||++++++|...+      .+++
T Consensus        28 ~G~fg~V~~~~~~~-------~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~l  100 (346)
T d1cm8a_          28 SGAYGAVCSAVDGR-------TGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYL  100 (346)
T ss_dssp             -----CEEEEEETT-------TCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEE
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEE
Confidence            99999999999865       8999999999754  2334567899999999999999999999997654      4699


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ||||+. .+|..+++        ...+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+|++|||+|
T Consensus       101 v~e~~~-~~l~~~~~--------~~~l~~~~~~~~~~qi~~aL~~LH---~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a  168 (346)
T d1cm8a_         101 VMPFMG-TDLGKLMK--------HEKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLA  168 (346)
T ss_dssp             EEECCS-EEHHHHHH--------HCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             EEeccc-ccHHHHHH--------hccccHHHHHHHHHHHHHHHHHHH---hCCCcccccCcchhhcccccccccccccce
Confidence            999994 58887773        346999999999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCCccchhhhhcccccccccccCC-------C-----CeE--EEc-cchhhhhhccchhhhc--------------
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNED-------D-----GYV--VLL-DHIKKYFEEDRLNEII--------------  240 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~-------~-----Gvi--el~-~~~~~~~~~~~~~~~~--------------  240 (292)
                      .......    ....||+.|++|+....       +     ||+  +|+ |+. |+..........              
T Consensus       169 ~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~-pf~~~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d1cm8a_         169 RQADSEM----TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKT-LFKGSDHLDQLKEIMKVTGTPPAEFV  243 (346)
T ss_dssp             EECCSSC----CSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSC-SSCCSSHHHHHHHHHHHHCCCCHHHH
T ss_pred             eccCCcc----ccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcC-CCCCCChHHHHHHHHhccCCCcHHHH
Confidence            8775432    34568899988885421       1     998  888 653 332211110000              


Q ss_pred             -----------c---cccccCCCCCCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          241 -----------D---PLIMGDRSCSGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       241 -----------~---~~~~~~~~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                 .   +..............++.+.+|+.+||+.||++|| +.|+++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~H  301 (346)
T d1cm8a_         244 QRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  301 (346)
T ss_dssp             HTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                       0   00000000000123456789999999999999999 9999875

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-36  Score=260.90  Aligned_cols=230  Identities=17%  Similarity=0.142  Sum_probs=166.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeecC------CcceEEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLET------QIPILVF  111 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~------~~~~lv~  111 (292)
                      +|+||+||+|++..       +++.||||.++.....    ..+|+.+|++++||||+++++++...      ..+++||
T Consensus        30 ~G~fg~Vy~a~~~~-------~~~~vAiK~i~~~~~~----~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~   98 (350)
T d1q5ka_          30 NGSFGVVYQAKLCD-------SGELVAIKKVLQDKRF----KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVL   98 (350)
T ss_dssp             EETTEEEEEEEETT-------TCCEEEEEEEECCSSS----CCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEE
T ss_pred             eCcCeEEEEEEECC-------CCCEEEEEEECccchH----HHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEE
Confidence            89999999999976       8999999999765322    23799999999999999999998643      2368999


Q ss_pred             eccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC-ceEEeeccccc
Q 044211          112 EYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN-VAKLFDFSFSI  190 (292)
Q Consensus       112 e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~-~~kl~Dfg~a~  190 (292)
                      ||+.++ +...+....   .....+++..+..++.||+.||.|||   +.+|+||||||+|||++.++ .+||+|||++.
T Consensus        99 Ey~~~~-~~~~l~~~~---~~~~~l~~~~~~~i~~qil~aL~yLH---~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~  171 (350)
T d1q5ka_          99 DYVPET-VYRVARHYS---RAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK  171 (350)
T ss_dssp             ECCSEE-HHHHHHHHH---HTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTTCCEEECCCTTCE
T ss_pred             eccCCc-cHHHHHhhh---hccCCCCHHHHHHHHHHHHHHHHHHH---hcCCcccCCCcceEEEecCCCceeEecccchh
Confidence            999864 444432111   24567999999999999999999999   99999999999999999775 89999999998


Q ss_pred             ccCCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhh---hc------------
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNE---II------------  240 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~---~~------------  240 (292)
                      .+.....  .....|+..|.+|+.....            ||+  ||+ |+. ||........   ++            
T Consensus       172 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~-pf~~~~~~~~l~~i~~~~g~~~~~~~~  248 (350)
T d1q5ka_         172 QLVRGEP--NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP-IFPGDSGVDQLVEIIKVLGTPTREQIR  248 (350)
T ss_dssp             ECCTTSC--CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSC-SSCCSSHHHHHHHHHHHHCCCCHHHHH
T ss_pred             hccCCcc--cccccccccccChHHhhcccCCCcceeecccceEEEehhhCCC-CCCCCCHHHHHHHHHHHhCCChHHhhh
Confidence            7754432  2345788889777654321            999  888 654 3322111100   00            


Q ss_pred             -------ccccccCCCC----CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH--HHHhh
Q 044211          241 -------DPLIMGDRSC----SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK--TQANV  288 (292)
Q Consensus       241 -------~~~~~~~~~~----~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~--L~~l~  288 (292)
                             ..........    ......++.+.+|+.+||+.||++|| +.|+++.  |++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         249 EMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  310 (350)
T ss_dssp             HHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             hhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcccc
Confidence                   0000000000    00124567899999999999999999 9999864  45443

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-36  Score=255.73  Aligned_cols=228  Identities=14%  Similarity=0.142  Sum_probs=165.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC--CcchHHHHHHHHHHHHhc---CCCCccceeeeeec-----CCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES--KPRTYDCCINNIVYASQM---IHRCIFKLIGCCLE-----TQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l---~h~niv~~~~~~~~-----~~~~  107 (292)
                      +|+||+||+|.+..      .+++.||||.++..  .......+.+|+.+++.|   +||||+++++++..     ....
T Consensus        17 ~G~fg~V~~a~~~~------~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~   90 (305)
T d1blxa_          17 EGAYGKVFKARDLK------NGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKL   90 (305)
T ss_dssp             EETTEEEEEEEETT------TTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEE
T ss_pred             cccCeEEEEEEEEC------CCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceE
Confidence            89999999999743      03677999998542  222233466777777766   79999999999863     3457


Q ss_pred             eEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecc
Q 044211          108 ILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFS  187 (292)
Q Consensus       108 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg  187 (292)
                      ++++||+.++++.....      .....+++..+..++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||
T Consensus        91 ~~~~e~~~~~~~~~~~~------~~~~~~~~~~~~~~~~qi~~aL~yLH---~~~ivHrDiKp~NILi~~~~~~kl~dfg  161 (305)
T d1blxa_          91 TLVFEHVDQDLTTYLDK------VPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFG  161 (305)
T ss_dssp             EEEEECCSCBHHHHHHH------SCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSCC
T ss_pred             EEEEEeccCCchhhhhh------ccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecCCCccEEEEcCCCCeeecchh
Confidence            89999999876654442      34567899999999999999999999   8999999999999999999999999999


Q ss_pred             cccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchh---hhcc---------
Q 044211          188 FSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLN---EIID---------  241 (292)
Q Consensus       188 ~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~---~~~~---------  241 (292)
                      ++......  .......||+.|++||+....           ||+  ||+ |+. ||.......   .++.         
T Consensus       162 ~~~~~~~~--~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~-pf~~~~~~~~~~~i~~~~~~~~~~~  238 (305)
T d1blxa_         162 LARIYSFQ--MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKP-LFRGSSDVDQLGKILDVIGLPGEED  238 (305)
T ss_dssp             SCCCCCGG--GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC-SCCCSSHHHHHHHHHHHHCCCCGGG
T ss_pred             hhhhhccc--ccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCC-CCCCCCHHHHHHHHHHhhCCCchhc
Confidence            98765432  234557799999999865433           999  888 653 332221100   0000         


Q ss_pred             ---------cccccCCCC---CCchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          242 ---------PLIMGDRSC---SGNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       242 ---------~~~~~~~~~---~~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                               .........   ......++.+.+|+.+||+.||++|| +.|+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~H  293 (305)
T d1blxa_         239 WPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH  293 (305)
T ss_dssp             SCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             ccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                     000000000   00123466889999999999999999 9999864

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-37  Score=261.63  Aligned_cols=222  Identities=18%  Similarity=0.184  Sum_probs=172.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCC----CcchHHHHHHHHHHHHhcCC-CCccceeeeeecCCcceEEEe
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDES----KPRTYDCCINNIVYASQMIH-RCIFKLIGCCLETQIPILVFE  112 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~~e~~~l~~l~h-~niv~~~~~~~~~~~~~lv~e  112 (292)
                      +|+||+||+|....    .-.+|+.||||.++..    .....+.+.+|+.++++++| |||+++++++.+....++++|
T Consensus        34 ~G~fg~Vy~~~~~~----~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~~~~v~e  109 (322)
T d1vzoa_          34 TGAYGKVFLVRKIS----GHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILD  109 (322)
T ss_dssp             ETTTEEEEEEEECS----STTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cCCCeEEEEEEECc----cCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCceeeeee
Confidence            99999999997631    0116889999998643    12234568899999999977 899999999999999999999


Q ss_pred             ccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccccc
Q 044211          113 YINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSISI  192 (292)
Q Consensus       113 ~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~~  192 (292)
                      |+.+|+|.+++..       ...+++..+..++.|++.||.|||   +.+++||||||+|||++.++.+||+|||++..+
T Consensus       110 ~~~~~~L~~~i~~-------~~~~~e~~~~~~~~Qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~  179 (322)
T d1vzoa_         110 YINGGELFTHLSQ-------RERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEF  179 (322)
T ss_dssp             CCCSCBHHHHHHH-------HSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             cccccHHHHHHHh-------cccccHHHHHHHHHHHHHHHHHhh---cCCEEeccCCccceeecCCCCEEEeeccchhhh
Confidence            9999999999943       345788999999999999999999   899999999999999999999999999999877


Q ss_pred             CCCCccchhhhhcccccccccccC--------CC-----CeE--EEc-cchhhhhhccc---hhhhcccccccCCCCCCc
Q 044211          193 PEGETHISELLSGLRAFDLARLNE--------DD-----GYV--VLL-DHIKKYFEEDR---LNEIIDPLIMGDRSCSGN  253 (292)
Q Consensus       193 ~~~~~~~~~~~~g~~~y~~~~~~~--------~~-----Gvi--el~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  253 (292)
                      ............|++.|++++...        ++     ||+  +|+ |.. ||.....   ...+.........+.+  
T Consensus       180 ~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~-PF~~~~~~~~~~~i~~~~~~~~~~~~--  256 (322)
T d1vzoa_         180 VADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGAS-PFTVDGEKNSQAEISRRILKSEPPYP--  256 (322)
T ss_dssp             CGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSC-TTSCTTSCCCHHHHHHHHHHCCCCCC--
T ss_pred             cccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHhcccCCCCCc--
Confidence            655555556677888887776432        22     998  888 654 4433211   1112222222222222  


Q ss_pred             hHHHHHHHHHHhHhcCCCCCCCC
Q 044211          254 QQQLQAFAHLIFECVNESPVDRP  276 (292)
Q Consensus       254 ~~~~~~l~~li~~Cl~~dP~~RP  276 (292)
                      ...++.+.+|+.+||+.||++||
T Consensus       257 ~~~s~~~~~li~~~l~~dP~~R~  279 (322)
T d1vzoa_         257 QEMSALAKDLIQRLLMKDPKKRL  279 (322)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGST
T ss_pred             ccCCHHHHHHHHHHcccCHHHcC
Confidence            36788999999999999999998

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.6e-35  Score=249.51  Aligned_cols=232  Identities=13%  Similarity=0.064  Sum_probs=174.8

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCC-CCccceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIH-RCIFKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||+||+|.+..       +++.||||+++....  ...+.+|++.++.++| +|++.+++++..+...++||||+. 
T Consensus        15 ~G~fG~Vy~a~~~~-------~~~~vAvK~~~~~~~--~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~~-   84 (293)
T d1csna_          15 EGSFGVIFEGTNLL-------NNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLG-   84 (293)
T ss_dssp             ECSSCEEEEEEETT-------TTEEEEEEEEECCTT--SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECCC-
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEEccccC--cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEecC-
Confidence            89999999999865       899999999865422  2346789999999975 899999999999999999999994 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecC-----CCceEEeecccccc
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNE-----ENVAKLFDFSFSIS  191 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~-----~~~~kl~Dfg~a~~  191 (292)
                      ++|.+++..      ....++...+..++.|++.||.|||   +.+|+||||||+|||++.     ++.+||+|||+|+.
T Consensus        85 ~~l~~~~~~------~~~~~~~~~~~~i~~q~~~~l~~lH---~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~  155 (293)
T d1csna_          85 PSLEDLLDL------CGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF  155 (293)
T ss_dssp             CBHHHHHHH------TTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred             CCHHHHHHh------hccchhhHHHHHHHHHHHHHHHHHH---HCCceeccCCccceeecCcccccCCceEEcccceeEE
Confidence            799999842      2456899999999999999999999   999999999999999974     57899999999987


Q ss_pred             cCCCCc------cchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhcc--chhhhcccccc--cC
Q 044211          192 IPEGET------HISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEED--RLNEIIDPLIM--GD  247 (292)
Q Consensus       192 ~~~~~~------~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~--~~~~~~~~~~~--~~  247 (292)
                      ......      .......||+.|++||.....           |++  ||+ |.. |+....  ...........  ..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~-Pf~~~~~~~~~~~~~~i~~~~~~  234 (293)
T d1csna_         156 YRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSL-PWQGLKAATNKQKYERIGEKKQS  234 (293)
T ss_dssp             SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC-TTSSCCSCCHHHHHHHHHHHHHH
T ss_pred             cccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCC-cCCCccchhHHHHHHHHHhccCC
Confidence            653221      123446799999888865433           888  888 544 332111  11111110000  00


Q ss_pred             CCCC-CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhhh
Q 044211          248 RSCS-GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANVC  289 (292)
Q Consensus       248 ~~~~-~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~~  289 (292)
                      .+.. ....+++.+.+++..||+.+|++|| ...+.+.|+++.+
T Consensus       235 ~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~  278 (293)
T d1csna_         235 TPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLE  278 (293)
T ss_dssp             SCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred             CChHHhcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHH
Confidence            0000 0014566899999999999999999 9999999988654

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.6e-36  Score=251.77  Aligned_cols=231  Identities=16%  Similarity=0.145  Sum_probs=168.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCcc-ceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIF-KLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv-~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      +|+||.||+|.+..       +++.||||++.....  ..++..|+.+++.++|+|++ .+.+++...+..++||||+. 
T Consensus        17 ~G~fG~Vy~a~~~~-------~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~-   86 (299)
T d1ckia_          17 SGSFGDIYLGTDIA-------AGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG-   86 (299)
T ss_dssp             ECSSSEEEEEEETT-------TTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC-
T ss_pred             eCCCcEEEEEEECC-------CCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC-
Confidence            89999999999865       899999999875422  23478899999999877655 55555566778899999996 


Q ss_pred             CChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEec---CCCceEEeecccccccC
Q 044211          117 GSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFN---EENVAKLFDFSFSISIP  193 (292)
Q Consensus       117 gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~---~~~~~kl~Dfg~a~~~~  193 (292)
                      +++.+.+.      .....+++..+..++.|++.||+|||   +.+|+||||||+|||++   .+..+||+|||+|+.+.
T Consensus        87 ~~l~~~~~------~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~  157 (299)
T d1ckia_          87 PSLEDLFN------FCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR  157 (299)
T ss_dssp             CBHHHHHH------HTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECB
T ss_pred             Cchhhhhh------hccCCCcHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHhhccccccCCCceeeeeccCcceecc
Confidence            57777663      23457999999999999999999999   89999999999999986   34579999999999875


Q ss_pred             CCCcc------chhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchhhh--cccccccC--CC
Q 044211          194 EGETH------ISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLNEI--IDPLIMGD--RS  249 (292)
Q Consensus       194 ~~~~~------~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~~~--~~~~~~~~--~~  249 (292)
                      .....      ......||+.|++|+.....           |++  ||+ |+. |+.........  +.......  .+
T Consensus       158 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~-P~~~~~~~~~~~~~~~~~~~~~~~~  236 (299)
T d1ckia_         158 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSL-PWQGLKAATKRQKYERISEKKMSTP  236 (299)
T ss_dssp             CTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSC-TTCCCC-------HHHHHHHHHHSC
T ss_pred             ccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCC-cccccchHHHHHHHHHhhcccCCCC
Confidence            43322      23456799999888755433           888  888 544 33221111110  00000000  00


Q ss_pred             CC-CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHHHHHhh
Q 044211          250 CS-GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKKTQANV  288 (292)
Q Consensus       250 ~~-~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~L~~l~  288 (292)
                      .+ ....+++.+.+++.+||+.||++|| ++++.+.|+.+.
T Consensus       237 ~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~  277 (299)
T d1ckia_         237 IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLF  277 (299)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHH
T ss_pred             hhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHH
Confidence            00 0124567899999999999999999 999999888764

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=256.40  Aligned_cols=221  Identities=14%  Similarity=0.121  Sum_probs=162.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeecC-----CcceEE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLET-----QIPILV  110 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~-----~~~~lv  110 (292)
                      +|+||+||+|.+..       +++.||||+++...  ....+++.+|+.+|++++||||+++++++...     ...+++
T Consensus        28 ~G~fg~Vy~a~~~~-------~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i  100 (348)
T d2gfsa1          28 SGAYGSVCAAFDTK-------TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYL  100 (348)
T ss_dssp             GGTTSSEEEEEETT-------TTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEE
T ss_pred             cCCCeEEEEEEECC-------CCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEE
Confidence            99999999999865       89999999997543  23446789999999999999999999998643     334677


Q ss_pred             EeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          111 FEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       111 ~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      ++|+.+|+|.+++        ....+++..+..++.||+.||.|||   +.+|+||||||+|||++.++.+|++|||++.
T Consensus       101 ~~~~~gg~L~~~~--------~~~~l~e~~~~~i~~qil~aL~~LH---~~giiHrDiKp~NILi~~~~~~kl~dfg~a~  169 (348)
T d2gfsa1         101 VTHLMGADLNNIV--------KCQKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR  169 (348)
T ss_dssp             EEECCSEEHHHHH--------TTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCC----
T ss_pred             EEeecCCchhhhc--------ccccccHHHHHHHHHHHHHHHHHHH---hCCCcccccCCccccccccccccccccchhc
Confidence            8888899999999        2346999999999999999999999   8999999999999999999999999999997


Q ss_pred             ccCCCCccchhhhhcccccccccccCCC------------CeE--EEc-cchhhhhhccchhhhccc-------------
Q 044211          191 SIPEGETHISELLSGLRAFDLARLNEDD------------GYV--VLL-DHIKKYFEEDRLNEIIDP-------------  242 (292)
Q Consensus       191 ~~~~~~~~~~~~~~g~~~y~~~~~~~~~------------Gvi--el~-~~~~~~~~~~~~~~~~~~-------------  242 (292)
                      .....    .....|+..|++++.....            |++  +|+ |+. |+...... .....             
T Consensus       170 ~~~~~----~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~-pF~~~~~~-~~~~~i~~~~~~~~~~~~  243 (348)
T d2gfsa1         170 HTDDE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT-LFPGTDHI-DQLKLILRLVGTPGAELL  243 (348)
T ss_dssp             CCTGG----GSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSC-SCCCSSHH-HHHHHHHHHHCCCCHHHH
T ss_pred             ccCcc----cccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCC-CCCCCCHH-HHHHHHHHhcCCCChHHh
Confidence            65322    2345678888777653322            888  888 653 32211100 00000             


Q ss_pred             -------------ccccCCCCCC---chHHHHHHHHHHhHhcCCCCCCCC-HHHHHH
Q 044211          243 -------------LIMGDRSCSG---NQQQLQAFAHLIFECVNESPVDRP-MVDVAK  282 (292)
Q Consensus       243 -------------~~~~~~~~~~---~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~  282 (292)
                                   .+........   ....++.+.+||.+||+.||++|| +.|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~  300 (348)
T d2gfsa1         244 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  300 (348)
T ss_dssp             TTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence                         0000000000   013456789999999999999999 999987

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-35  Score=251.15  Aligned_cols=223  Identities=16%  Similarity=0.183  Sum_probs=158.3

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCC--cchHHHHHHHHHHHHhcCCCCccceeeeeec------CCcceE
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESK--PRTYDCCINNIVYASQMIHRCIFKLIGCCLE------TQIPIL  109 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~------~~~~~l  109 (292)
                      +|+||+||+|.+..       +|+.||||++....  .....++.+|+.++++++||||+++++++..      .+.+|+
T Consensus        27 ~G~fg~V~~~~d~~-------t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~i   99 (355)
T d2b1pa1          27 SGAQGIVCAAYDAV-------LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYL   99 (355)
T ss_dssp             CC--CEEEEEEETT-------TTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEE
T ss_pred             cCcCeEEEEEEECC-------CCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEE
Confidence            89999999999876       89999999997542  3344678999999999999999999999964      356799


Q ss_pred             EEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCceEEeecccc
Q 044211          110 VFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENVAKLFDFSFS  189 (292)
Q Consensus       110 v~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a  189 (292)
                      ||||+.+ ++.+.+         ...+++..+..++.||+.||.|||   ..+|+||||||+|||++.++.+|++|||++
T Consensus       100 v~Ey~~~-~l~~~~---------~~~~~~~~i~~~~~qil~gl~~LH---~~giiHrDlKP~Nil~~~~~~~kl~df~~~  166 (355)
T d2b1pa1         100 VMELMDA-NLCQVI---------QMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLA  166 (355)
T ss_dssp             EEECCSE-EHHHHH---------TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-
T ss_pred             EEeccch-HHHHhh---------hcCCCHHHHHHHHHHHHHHHHHhh---hcccccccCCccccccccccceeeechhhh
Confidence            9999986 555555         235899999999999999999999   899999999999999999999999999998


Q ss_pred             cccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccchh---h-----------hc-
Q 044211          190 ISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDRLN---E-----------II-  240 (292)
Q Consensus       190 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~~~---~-----------~~-  240 (292)
                      .......  ......+|+.|++||.....           ||+  +|+ |+. ||.......   .           .+ 
T Consensus       167 ~~~~~~~--~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~-pF~~~~~~~~~~~i~~~~~~~~~~~~~  243 (355)
T d2b1pa1         167 RTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKI-LFPGRDYIDQWNKVIEQLGTPCPEFMK  243 (355)
T ss_dssp             ----------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSC-SSCCSSHHHHHHHHHHHHCCCCHHHHT
T ss_pred             hcccccc--ccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCC-CCCCCCHHHHHHHHHHhccCCCHHHHH
Confidence            8665432  23445688899888775433           888  888 754 332111000   0           00 


Q ss_pred             ----------ccc-----------c-ccCCCCC--CchHHHHHHHHHHhHhcCCCCCCCC-HHHHHHH
Q 044211          241 ----------DPL-----------I-MGDRSCS--GNQQQLQAFAHLIFECVNESPVDRP-MVDVAKK  283 (292)
Q Consensus       241 ----------~~~-----------~-~~~~~~~--~~~~~~~~l~~li~~Cl~~dP~~RP-~~el~~~  283 (292)
                                ...           . ....+..  .....++.+.+|+.+||+.||++|| +.|+++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         244 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             TSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                      000           0 0000000  0124577899999999999999999 9999854

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.6e-29  Score=214.96  Aligned_cols=227  Identities=11%  Similarity=0.089  Sum_probs=158.9

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-----------CCCccceeeeeec--C
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-----------HRCIFKLIGCCLE--T  104 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~~~~~~~~--~  104 (292)
                      +|+||+||+|+...       +|+.||||+++... ...+.+.+|+.+++.++           |+||+++++++..  .
T Consensus        23 ~G~fg~Vy~~~~~~-------~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~   94 (362)
T d1q8ya_          23 WGHFSTVWLAKDMV-------NNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGP   94 (362)
T ss_dssp             ECSSEEEEEEEETT-------TTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEET
T ss_pred             eCCCeEEEEEEECC-------CCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccc
Confidence            89999999999865       89999999998652 33466788999888775           5789999988865  3


Q ss_pred             CcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCCc----
Q 044211          105 QIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEENV----  180 (292)
Q Consensus       105 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~~----  180 (292)
                      ...+++++++..+.........    .....+++..+..++.|++.||.|||+  ..+|+||||||+|||++.++.    
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~i~~qil~al~~lh~--~~~IvHrDlKp~NIll~~~~~~~~~  168 (362)
T d1q8ya_          95 NGVHVVMVFEVLGENLLALIKK----YEHRGIPLIYVKQISKQLLLGLDYMHR--RCGIIHTDIKPENVLMEIVDSPENL  168 (362)
T ss_dssp             TEEEEEEEECCCCEEHHHHHHH----TTTSCCCHHHHHHHHHHHHHHHHHHHH--TTCEECSCCSGGGEEEEEEETTTTE
T ss_pred             cceeeeeeeccccccccccccc----ccccCCcHHHHHHHHHHHHHHHHHHhh--hcCcccccCChhHeeeeccCccccc
Confidence            4456667666543332222111    346778999999999999999999993  388999999999999986653    


Q ss_pred             --eEEeecccccccCCCCccchhhhhcccccccccccCCC-----------CeE--EEc-cchhhhhhccc---------
Q 044211          181 --AKLFDFSFSISIPEGETHISELLSGLRAFDLARLNEDD-----------GYV--VLL-DHIKKYFEEDR---------  235 (292)
Q Consensus       181 --~kl~Dfg~a~~~~~~~~~~~~~~~g~~~y~~~~~~~~~-----------Gvi--el~-~~~~~~~~~~~---------  235 (292)
                        ++++|||.|......    .....||+.|++||.....           |++  +|+ |+. |+.....         
T Consensus       169 ~~~kl~dfg~s~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~-pF~~~~~~~~~~~~~~  243 (362)
T d1q8ya_         169 IQIKIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDF-LFEPDEGHSYTKDDDH  243 (362)
T ss_dssp             EEEEECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSC-CC---------CHHHH
T ss_pred             ceeeEeecccccccccc----cccccccccccChhhccccCCCccccccchHHHHHHHHHCCC-CCCCCccccccchhHH
Confidence              999999999765432    2346789999888755432           888  888 654 2211100         


Q ss_pred             h---------------------hhhcc-----cccccCC----------CCCCchHHHHHHHHHHhHhcCCCCCCCC-HH
Q 044211          236 L---------------------NEIID-----PLIMGDR----------SCSGNQQQLQAFAHLIFECVNESPVDRP-MV  278 (292)
Q Consensus       236 ~---------------------~~~~~-----~~~~~~~----------~~~~~~~~~~~l~~li~~Cl~~dP~~RP-~~  278 (292)
                      .                     ....+     ..+....          ........++.+.+|+.+||+.||.+|| +.
T Consensus       244 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~  323 (362)
T d1q8ya_         244 IAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAG  323 (362)
T ss_dssp             HHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHH
T ss_pred             HHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHH
Confidence            0                     00000     0000000          0011246678899999999999999999 99


Q ss_pred             HHHHH
Q 044211          279 DVAKK  283 (292)
Q Consensus       279 el~~~  283 (292)
                      |+++.
T Consensus       324 e~L~H  328 (362)
T d1q8ya_         324 GLVNH  328 (362)
T ss_dssp             HHHTC
T ss_pred             HHhcC
Confidence            99864

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.86  E-value=8.4e-22  Score=154.68  Aligned_cols=127  Identities=14%  Similarity=0.138  Sum_probs=99.4

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcc------------------hHHHHHHHHHHHHhcCCCCccceee
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPR------------------TYDCCINNIVYASQMIHRCIFKLIG   99 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~------------------~~~~~~~e~~~l~~l~h~niv~~~~   99 (292)
                      +|+||+||+|...        +|+.||||+++.....                  .......|...+.++.|.+++..++
T Consensus        10 ~G~~g~Vy~a~~~--------~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~   81 (191)
T d1zara2          10 EGKESAVFNCYSE--------KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYA   81 (191)
T ss_dssp             ECSSEEEEEEEET--------TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEE
T ss_pred             eCcceEEEEEECC--------CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEE
Confidence            8999999999986        8999999987532110                  0123456888999999999998876


Q ss_pred             eeecCCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCCCCceEecCCC
Q 044211          100 CCLETQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRDFKLSNILFNEEN  179 (292)
Q Consensus       100 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~dlk~~nili~~~~  179 (292)
                      +.    ..+++|||+++..+.+              ++......++.|++.+|.|||   ..+++||||||+|||++++ 
T Consensus        82 ~~----~~~lvme~~~~~~~~~--------------l~~~~~~~i~~ql~~~l~~lH---~~giiHrDiKP~NILv~~~-  139 (191)
T d1zara2          82 WE----GNAVLMELIDAKELYR--------------VRVENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVSEE-  139 (191)
T ss_dssp             EE----TTEEEEECCCCEEGGG--------------CCCSCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEETT-
T ss_pred             ec----CCEEEEEeeccccccc--------------hhhHHHHHHHHHHHHHHHHHh---hCCEEEccCChhheeeeCC-
Confidence            53    3479999999755432              222335678999999999999   8999999999999999975 


Q ss_pred             ceEEeecccccccCC
Q 044211          180 VAKLFDFSFSISIPE  194 (292)
Q Consensus       180 ~~kl~Dfg~a~~~~~  194 (292)
                      .++|+|||.|.....
T Consensus       140 ~~~liDFG~a~~~~~  154 (191)
T d1zara2         140 GIWIIDFPQSVEVGE  154 (191)
T ss_dssp             EEEECCCTTCEETTS
T ss_pred             CEEEEECCCcccCCC
Confidence            589999999976643

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.61  E-value=8.9e-08  Score=76.99  Aligned_cols=133  Identities=14%  Similarity=-0.021  Sum_probs=88.0

Q ss_pred             ccCC-CeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcC-CCCccceeeeeecCCcceEEEeccC
Q 044211           38 IKNG-YKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMI-HRCIFKLIGCCLETQIPILVFEYIN  115 (292)
Q Consensus        38 ~G~~-g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~~~~~~~~~~~~~lv~e~~~  115 (292)
                      +|+. +.||+...         +++.+.+|............+.+|...+..+. +--+.+++.+...++..++||++.+
T Consensus        23 ~G~s~~~v~rv~~---------~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l~   93 (263)
T d1j7la_          23 EGMSPAKVYKLVG---------ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEAD   93 (263)
T ss_dssp             CCCSSSEEEEEEC---------SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCS
T ss_pred             CCCCCCcEEEEEe---------CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEecc
Confidence            4443 68998876         77778889876543333445678888888774 3345678888777888999999999


Q ss_pred             CCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC-------------------------------------
Q 044211          116 CGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVG-------------------------------------  158 (292)
Q Consensus       116 ~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~-------------------------------------  158 (292)
                      +.++.+...         ...   ....++.+++..+..||..                                     
T Consensus        94 G~~~~~~~~---------~~~---~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (263)
T d1j7la_          94 GVLCSEEYE---------DEQ---SPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEED  161 (263)
T ss_dssp             SEEHHHHTT---------TCS---CHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTT
T ss_pred             ccccccccc---------ccc---cHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhccccc
Confidence            877754430         000   1122333444444444421                                     


Q ss_pred             -------------------CCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          159 -------------------FPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       159 -------------------~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                                         ....++|+|+.|.||++++++...|.||+.+..
T Consensus       162 ~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         162 TPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             CSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             ccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhccc
Confidence                               011368999999999999876677999988753

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=98.10  E-value=1.2e-05  Score=63.73  Aligned_cols=71  Identities=10%  Similarity=-0.073  Sum_probs=50.4

Q ss_pred             ccCC-CeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCC--CCccceeeeeecCCcceEEEecc
Q 044211           38 IKNG-YKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIH--RCIFKLIGCCLETQIPILVFEYI  114 (292)
Q Consensus        38 ~G~~-g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~~~~~~~~~~~~~lv~e~~  114 (292)
                      .|.. +.||+....        .+..+.+|.......   ..+..|...++.+..  -.+.+++.+...++..++||+++
T Consensus        20 ~G~s~~~v~r~~~~--------~~~~~vlK~~~~~~~---~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i   88 (255)
T d1nd4a_          20 IGCSDAAVFRLSAQ--------GRPVLFVKTDLSGAL---NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEV   88 (255)
T ss_dssp             CTTSSCEEEEEECT--------TSCCEEEEEECSCTT---SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECC
T ss_pred             CcccCCeEEEEEeC--------CCCEEEEEeCCccCH---hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEee
Confidence            4443 678998875        677789998655432   336678888877743  23567788877888889999999


Q ss_pred             CCCCh
Q 044211          115 NCGSL  119 (292)
Q Consensus       115 ~~gsL  119 (292)
                      ++.++
T Consensus        89 ~G~~~   93 (255)
T d1nd4a_          89 PGQDL   93 (255)
T ss_dssp             SSEET
T ss_pred             ecccc
Confidence            87544

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.51  E-value=0.00032  Score=59.15  Aligned_cols=72  Identities=14%  Similarity=0.073  Sum_probs=44.5

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecC----C---CcchHHHHHHHHHHHHhcC-C--CCccceeeeeecCCcc
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDE----S---KPRTYDCCINNIVYASQMI-H--RCIFKLIGCCLETQIP  107 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~----~---~~~~~~~~~~e~~~l~~l~-h--~niv~~~~~~~~~~~~  107 (292)
                      .|....||+.....       .++.|++|.-..    .   -+....+...|...|+.+. +  ..+.+++.+  ++...
T Consensus        36 ~G~~N~vfrV~~~~-------~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~  106 (392)
T d2pula1          36 DGNLNYVFHIYDQE-------HDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMA  106 (392)
T ss_dssp             SSSSEEEEEEEC-----------CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTT
T ss_pred             CCceEeEEEEEeCC-------CCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCC
Confidence            57778999998753       567899997432    1   1123345667888887763 2  345566644  44567


Q ss_pred             eEEEeccCCCC
Q 044211          108 ILVFEYINCGS  118 (292)
Q Consensus       108 ~lv~e~~~~gs  118 (292)
                      ++|||++.+..
T Consensus       107 ~lvmE~L~~~~  117 (392)
T d2pula1         107 VTVMEDLSHLK  117 (392)
T ss_dssp             EEEECCCTTSE
T ss_pred             EEEEeccCCcc
Confidence            89999987543

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.0027  Score=51.73  Aligned_cols=138  Identities=14%  Similarity=0.142  Sum_probs=76.7

Q ss_pred             eeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCc--cceee-----eeecCCcceEEEeccC
Q 044211           43 KLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCI--FKLIG-----CCLETQIPILVFEYIN  115 (292)
Q Consensus        43 ~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~ni--v~~~~-----~~~~~~~~~lv~e~~~  115 (292)
                      .||++...        +|+.|++|..... .....++..|...+..|....+  +....     .+...+..+.++++..
T Consensus        37 ~vy~v~~~--------dg~~~VlK~~rp~-~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~  107 (325)
T d1zyla1          37 RVYQFQDE--------DRRRFVVKFYRPE-RWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVG  107 (325)
T ss_dssp             EEEEECCT--------TCCCEEEEEECTT-TSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCC
T ss_pred             eeEEEEcC--------CCCEEEEEEeCCC-CCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecC
Confidence            68888886        8999999997654 2345678889998888753222  11111     1122445678888887


Q ss_pred             CCChh-----------HHhhh-h----CCCCCCCCCCCH----------------------HHHHHHHHHHHHHHHHhh-
Q 044211          116 CGSLA-----------DRIRI-H----HTPQPQHEPLLL----------------------THRLKIAMDIANAIAYLH-  156 (292)
Q Consensus       116 ~gsL~-----------~~l~~-~----~~~~~~~~~l~~----------------------~~~~~i~~~i~~~l~~lh-  156 (292)
                      |..+.           ..+.+ |    ......+..++.                      ......+..+...+.-.- 
T Consensus       108 G~~~~~~~~~~~~~lG~~LA~lH~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  187 (325)
T d1zyla1         108 GRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWR  187 (325)
T ss_dssp             CEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHCC
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHHhhcccCCccccCCCCHHHHhhhhHHHHHHcCcCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence            53221           11111 1    000111112221                      112223333433333221 


Q ss_pred             cCCCCCcccCCCCCCceEecCCCceEEeecccccc
Q 044211          157 VGFPRPVIFRDFKLSNILFNEENVAKLFDFSFSIS  191 (292)
Q Consensus       157 ~~~~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~~  191 (292)
                      .....+++|+|+.+.|||++++  ..+.||+-+..
T Consensus       188 ~~~p~~liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         188 EDFTVLRLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             SCSCCEECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             ccCCceeecCCCCcccEEEeCC--ceEEechhccc
Confidence            1224568999999999999743  45899988763

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.23  E-value=0.022  Score=47.47  Aligned_cols=75  Identities=15%  Similarity=-0.016  Sum_probs=45.0

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCc-cceeeeeecCCcceEEEeccCC
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCI-FKLIGCCLETQIPILVFEYINC  116 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~~~~~~~~~~~~~lv~e~~~~  116 (292)
                      .|-.-.+|+..........-...+.|.+++.....  ......+|..+++.+.-.++ .++++++.    -.+|+||+++
T Consensus        52 GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~--~~idr~~E~~i~~~ls~~gl~Pkll~~~~----~g~I~efi~g  125 (395)
T d1nw1a_          52 GGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--TESHLVAESVIFTLLSERHLGPKLYGIFS----GGRLEEYIPS  125 (395)
T ss_dssp             CCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--CHHHHHHHHHHHHHHHHTTSSSCEEEEET----TEEEECCCCE
T ss_pred             CccccceEEEEeCCCCccccCCCCcEEEEecCCcc--hhhHHHHHHHHHHHHHhCCCCCeEEEEcC----CceEEEEecc
Confidence            35567899887642110011134567788776332  23345688999988853344 47787764    2689999986


Q ss_pred             CC
Q 044211          117 GS  118 (292)
Q Consensus       117 gs  118 (292)
                      .+
T Consensus       126 ~~  127 (395)
T d1nw1a_         126 RP  127 (395)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.90  E-value=0.016  Score=46.57  Aligned_cols=31  Identities=32%  Similarity=0.578  Sum_probs=27.6

Q ss_pred             CCCcccCCCCCCceEecCCCceEEeeccccc
Q 044211          160 PRPVIFRDFKLSNILFNEENVAKLFDFSFSI  190 (292)
Q Consensus       160 ~~~i~H~dlk~~nili~~~~~~kl~Dfg~a~  190 (292)
                      ..+++|+|+.+.|++++.+...-+.||+.+.
T Consensus       182 ~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             ccccccCCcchhhhhcccccceeEecccccc
Confidence            4578999999999999998777899999885

>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Actin-fragmin kinase, catalytic domain
domain: Actin-fragmin kinase, catalytic domain
species: Physarum polycephalum [TaxId: 5791]

Probab=80.51  E-value=4.5  Score=31.63  Aligned_cols=133  Identities=13%  Similarity=0.034  Sum_probs=74.1

Q ss_pred             ccCCCeeEeeecCCCCccCccCCeEEEEEeecCCCcchHHHHHHHHHHHHhcCCCCccceeeeeec--------------
Q 044211           38 IKNGYKLYEGFFQNRPISGFFQERPVSVMKFDESKPRTYDCCINNIVYASQMIHRCIFKLIGCCLE--------------  103 (292)
Q Consensus        38 ~G~~g~V~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~--------------  103 (292)
                      .+|.+-|+-+..         ++..+++|.-..   ...+.+..++...-.+.-|...-+. .+..              
T Consensus        78 ~~Gs~Gv~FV~~---------e~gaiVlK~s~t---ta~E~y~~eLAr~LGvpvPqmRvI~-~~~~E~~~~~~~~l~~~e  144 (342)
T d1cjaa_          78 EKGTEGLFFVET---------ESGVFIVKRSTN---IESETFCSLLCMRLGLHAPKVRVVS-SNSEEGTNMLECLAAIDK  144 (342)
T ss_dssp             CSTTSCEEEEEE---------SSCEEEEECCTT---HHHHHHHHHHHHHHTCCCCCEEEEE-SSSHHHHHHHHHHHHHCS
T ss_pred             ecCCceEEEEEc---------CCceEEEecCCc---hHHHHHHHHHHHHhCCCCCceEEec-CCCHHHHHHHHHHhcCCC
Confidence            444444555555         667788887332   2335566676666666777644332 1110              


Q ss_pred             ---------CCcceEEEeccCCCChhHHhhhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCcccCC-CCCCce
Q 044211          104 ---------TQIPILVFEYINCGSLADRIRIHHTPQPQHEPLLLTHRLKIAMDIANAIAYLHVGFPRPVIFRD-FKLSNI  173 (292)
Q Consensus       104 ---------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~i~H~d-lk~~ni  173 (292)
                               ....+++|||.+|..|.+.-..     .....+....... +..|+.-=.++++..+.++.+++ =++.|+
T Consensus       145 ~d~~I~sel~~A~~liMeYvpG~~l~e~~~~-----~a~~~fs~~~l~~-LGkIiaFDifInN~DR~PL~Wrn~GN~~Ni  218 (342)
T d1cjaa_         145 SFRVITTLANQANILLMELVRGITLNKLTTT-----SAPEVLTKSTMQQ-LGSLMALDVIVNNSDRLPIAWTNEGNLDNI  218 (342)
T ss_dssp             SSCHHHHHTTCSEEEEEECCCEEESTTCCSS-----SHHHHSCHHHHHH-HHHHHHHHHHHTCCSSSCSSSCSCCCGGGE
T ss_pred             hhHHHHHHHhcccceeeeccCCccccccccc-----cchhhhcHHHHHH-hhhHHHHHHHHcCCccccccccCCCCccce
Confidence                     1335788999998666433200     0001122222221 22233333567877667788774 389999


Q ss_pred             EecCCC-ceEEeecccc
Q 044211          174 LFNEEN-VAKLFDFSFS  189 (292)
Q Consensus       174 li~~~~-~~kl~Dfg~a  189 (292)
                      +++.++ .+...|=+..
T Consensus       219 ml~~n~~~~~~IDs~i~  235 (342)
T d1cjaa_         219 MLSERGATVVPIDSKII  235 (342)
T ss_dssp             EEESBTTCEEECSCCCC
T ss_pred             EEecCCcEEEEecCCcc
Confidence            999776 6788886554