Citrus Sinensis ID: 044268

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTLSQTAGAVVGGAIYAKKLFKKKSNTAPRFQQLSSVQTQDILDGDENE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEcccccccEEEEccccccccccccccccccccccccccEEEEcccccEEEEcccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEEcccccEEEEEccccccccccccccccccccccccccEEEEcccccEEEEcccccccccccccccccccccHHccHHHHHHHHHHHHHccccHHHcHccccccccccccccc
Coil and Loop (DISEMBL)
gkfcdeemtmcdgtnefwcehggkceeivqgemydckcpagyagehcehsgtpcgqifcfHEAQCLALSqvhnacdcppdwkgsadcslptlsqtagAVVGGAIYAKKLFkkksntaprfqqlssvqtqdildgdene
Flexible Loop (DISEMBL)
gkfcdeemtmcdgtnefwceHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTLSQTAGAVVGGAIYAKKLFKKKsntaprfqqlssvqtqdildgdene
Low Complexity Region (SEG)
GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTLSQTAGAVVGGAIYAKKLFKKKSNTAPRFQQLSSVQTQDILDGDENE
Disordered region (IsUnstruct)
*******MTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWK********************************************************
Disordered Region (DISOPRED)
GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTLSQTAGAVVGGAIYAKKLFKKKSNTAPRFQQLSSVQTQDILDGD***
Disordered Region (DISEMBL)
********TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTLSQTAGAVVGGAIYAKKLFKKKSNTAPRFQQLSSVQTQDILDGDENE
Disordered Region (DISPRO)
***CDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTLSQTAGAVVGGAIYAKKLFKKKSNT**********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTLSQTAGAVVGGAIYAKKLFKKKSNTAPRFQQLSSVQTQDILDGDENE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q9NR61	685	Delta-like protein 4 OS=H	yes	no	0.572	0.115	0.411	1e-08
Q9JI71	686	Delta-like protein 4 OS=M	yes	no	0.572	0.115	0.376	2e-07
O75094	1523	Slit homolog 3 protein OS	no	no	0.557	0.050	0.344	1e-06
Q9NYQ8	4349	Protocadherin Fat 2 OS=Ho	no	no	0.550	0.017	0.329	1e-06
Q9IAT6	664	Delta-like protein C OS=D	yes	no	0.572	0.118	0.357	2e-06
O88280	1523	Slit homolog 3 protein OS	no	no	0.557	0.050	0.355	3e-06
Q9WVB4	1523	Slit homolog 3 protein OS	no	no	0.557	0.050	0.366	5e-06
P33450	5147	Cadherin-related tumor su	yes	no	0.550	0.014	0.316	6e-06
P21783	2524	Neurogenic locus notch pr	N/A	no	0.565	0.030	0.349	2e-05
P46531	2555	Neurogenic locus notch ho	no	no	0.565	0.030	0.345	2e-05

>sp|Q9NR61|DLL4_HUMAN Delta-like protein 4 OS=Homo sapiens GN=DLL4 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           G  C+ E++ CD      C +GG C++  Q + Y C CP GY G HCEHS   C    CF
Sbjct: 318 GVDCELELSECDSNP---CRNGGSCKD--QEDGYHCLCPPGYYGLHCEHSTLSCADSPCF 372

Query: 61  HEAQCLALSQVHN-ACDCPPDWKGS 84
           +   C   +Q  N AC+CPP++ GS
Sbjct: 373 NGGSCRERNQGANYACECPPNFTGS 397

Plays a role in the Notch signaling pathway. Activates Notch-1 and Notch-4.
Homo sapiens (taxid: 9606)

>sp|Q9JI71|DLL4_MOUSE Delta-like protein 4 OS=Mus musculus GN=Dll4 PE=2 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           G+ C+  ++ C       C +GG C++  Q   Y C CP GY G+HCEHS   C    CF
Sbjct: 319 GEHCELGLSKCASNP---CRNGGSCKD--QENSYHCLCPPGYYGQHCEHSTLTCADSPCF 373

Query: 61  HEAQCLALSQVHN-ACDCPPDWKGS 84
           +   C   +Q  + AC+CPP++ GS
Sbjct: 374 NGGSCRERNQGSSYACECPPNFTGS 398

Plays a role in the Notch signaling pathway. Activates Notch-1 and Notch-4.

Mus musculus (taxid: 10090)

>sp|O75094|SLIT3_HUMAN Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 1    GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH-------SGTP 53
            GK C+ +   C       C HG +C + + G  Y C CP G++G  CEH         +P
Sbjct: 1068 GKLCETDNDDCVAHK---CRHGAQCVDTING--YTCTCPQGFSGPFCEHPPPMVLLQTSP 1122

Query: 54   CGQIFCFHEAQCLALSQVHNACDCPPDWKG 83
            C Q  C + AQC+ + Q    C CPP + G
Sbjct: 1123 CDQYECQNGAQCIVVQQ-EPTCRCPPGFAG 1151

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Homo sapiens (taxid: 9606)

>sp|Q9NYQ8|FAT2_HUMAN Protocadherin Fat 2 OS=Homo sapiens GN=FAT2 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 6    EEMTMC----DGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFH 61
            + +T C    D  ++  C +GGKC     G  Y CKCP  ++G+HCE     C    C  
Sbjct: 3939 QALTQCCLHSDYCSQNTCLNGGKCS-WTHGAGYVCKCPPQFSGKHCEQGRENCTFAPCLE 3997

Query: 62   EAQCLALSQVHNACDCPPDWKG 83
               C+ LS    +C+CP  + G
Sbjct: 3998 GGTCI-LSPKGASCNCPHPYTG 4018

Plays a role in the migration of epidermal cells. May modulate the extracellular space surronding parallel fibers of cerebellar during development.

Homo sapiens (taxid: 9606)

>sp|Q9IAT6|DLLC_DANRE Delta-like protein C OS=Danio rerio GN=dlc PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           GK C+ E   CD      C++GG C +  Q   Y C CP G+ G++CE S   C    CF
Sbjct: 299 GKNCEIETNECDSNP---CKNGGSCND--QENDYTCTCPQGFYGKNCEVSAMTCADGPCF 353

Query: 61  HEAQCLALSQVHNACDCPPDWKGS 84
           +   C+       +C CPP + GS
Sbjct: 354 NGGTCMEKGSGSYSCRCPPGYMGS 377

Acts as a ligand for Notch receptors and is involved in somitogenesis. Can activate Notch receptors. Required in somite segmentation to keep the oscillations of neighboring presomitic mesoderm cells synchronized.

Danio rerio (taxid: 7955)

>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 1    GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH-------SGTP 53
            GK C+ +   C       C HG +C + V G  Y C CP G++G  CEH         +P
Sbjct: 1068 GKLCETDNDDCVAHK---CRHGAQCVDAVNG--YTCICPQGFSGLFCEHPPPMVLLQTSP 1122

Query: 54   CGQIFCFHEAQCLALSQVHNACDCPPDWKG 83
            C Q  C + AQC+ + Q    C CPP + G
Sbjct: 1123 CDQYECQNGAQCIVVQQ-EPTCRCPPGFAG 1151

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Rattus norvegicus (taxid: 10116)

>sp|Q9WVB4|SLIT3_MOUSE Slit homolog 3 protein OS=Mus musculus GN=Slit3 PE=2 SV=2

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 1    GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH-------SGTP 53
            GK C+   T  D      C HG +C + V G  Y C CP G++G  CEH         +P
Sbjct: 1068 GKLCE---TNNDDCVAHKCRHGAQCVDEVNG--YTCICPQGFSGLFCEHPPPMVLLQTSP 1122

Query: 54   CGQIFCFHEAQCLALSQVHNACDCPPDWKG 83
            C Q  C + AQC+ + Q    C CPP + G
Sbjct: 1123 CDQYECQNGAQCIVVQQ-EPTCRCPPGFAG 1151

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Mus musculus (taxid: 10090)

>sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosophila melanogaster GN=ft PE=1 SV=3

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 1    GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
            GK C++E +  D      C +GG C+    G  Y C C  G+ G  CE     C    C 
Sbjct: 4045 GKHCEKERS--DVCYSKPCRNGGSCQRSPDGSSYFCLCRPGFRGNQCESVSDSCRPNPCL 4102

Query: 61   HEAQCLALSQVHNACDCPP 79
            H   C++L   +  C+C P
Sbjct: 4103 HGGLCVSLKPGYK-CNCTP 4120

Could function as a cell-adhesion protein. Acts as a tumor suppressor. Required for correct morphogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|P21783|NOTCH_XENLA Neurogenic locus notch protein homolog OS=Xenopus laevis GN=notch1 PE=1 SV=3

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           G+ CDE    C   N   C +GG C +      YDC C  G++G++CE +   C    C 
Sbjct: 211 GRNCDEPYVPC---NPSPCLNGGTCRQ-TDDTSYDCTCLPGFSGQNCEENIDDCPSNNCR 266

Query: 61  HEAQCLALSQVHNACDCPPDWKG 83
           +   C+     +N C CPPDW G
Sbjct: 267 NGGTCVDGVNTYN-CQCPPDWTG 288

Xenopus laevis (taxid: 8355)

>sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 1    GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
            G FC+E++  C       C +G  C + V  + Y C CPAG++G HCE++   C +  CF
Sbjct: 939  GTFCEEDINECASDP---CRNGANCTDCV--DSYTCTCPAGFSGIHCENNTPDCTESSCF 993

Query: 61   HEAQCLALSQVHNACDCPPDWKGS 84
            +   C+        C CPP + GS
Sbjct: 994  NGGTCVDGINSF-TCLCPPGFTGS 1016

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. May be important for normal lymphocyte function. In altered form, may contribute to transformation or progression in some T-cell neoplasms. Involved in the maturation of both CD4+ and CD8+ cells in the thymus. May be important for follicular differentiation and possibly cell fate selection within the follicle. During cerebellar development, may function as a receptor for neuronal DNER and may be involved in the differentiation of Bergmann glia. Represses neuronal and myogenic differentiation. May enhance HIF1A function by sequestering HIF1AN away from HIF1A.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
255541658	246	conserved hypothetical protein [Ricinus	0.971	0.544	0.549	1e-45
116792811	239	unknown [Picea sitchensis]	0.971	0.560	0.485	2e-36
168066956	238	predicted protein [Physcomitrella patens	0.898	0.521	0.282	4e-07
449267132	4375	Protocadherin Fat 2 [Columba livia]	0.543	0.017	0.380	5e-07
354501146	760	PREDICTED: delta-like protein 4-like [Cr	0.572	0.103	0.4	6e-07
444723716	4521	Protocadherin Fat 2 [Tupaia chinensis]	0.550	0.016	0.341	7e-07
119612872	724	delta-like 4 (Drosophila) [Homo sapiens]	0.572	0.109	0.411	7e-07
9506545	685	delta-like protein 4 precursor [Homo sap	0.572	0.115	0.411	9e-07
224067665	4428	PREDICTED: protocadherin Fat 2 [Taeniopy	0.927	0.028	0.277	9e-07
114656421	685	PREDICTED: delta-like protein 4 [Pan tro	0.572	0.115	0.411	9e-07

>gi|255541658|ref|XP_002511893.1| conserved hypothetical protein [Ricinus communis] gi|223549073|gb|EEF50562.1| conserved hypothetical protein [Ricinus communis]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/171 (54%), Positives = 109/171 (63%), Gaps = 37/171 (21%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           GK CDEEM MCDGTN FWCEHGGKC EIVQGE Y CKC  G+ G+HCEHSG  CG+I CF
Sbjct: 67  GKHCDEEMIMCDGTNSFWCEHGGKCVEIVQGENYTCKCLPGFIGDHCEHSGKACGRIHCF 126

Query: 61  HEAQCLALSQVHNACDCPPDWKGSADCSLPTLSQT------------------------- 95
           HEA+CL   ++   C+CP DWKG+ADCSLPT++QT                         
Sbjct: 127 HEAKCLVEDEI---CECPSDWKGNADCSLPTITQTESPANSTTTGIARPGENFFSRSNWV 183

Query: 96  ---------AGAVVGGAIYAKKLFKKKSNTAPRFQQLSSVQTQDILDGDEN 137
                     GAV GGAIYAK+LF KK N  PRFQQLS +Q+ D+LD DE+
Sbjct: 184 VVALAVSCSVGAVAGGAIYAKRLFSKKENAVPRFQQLSQMQSHDVLDDDED 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116792811|gb|ABK26509.1| unknown [Picea sitchensis]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 101/167 (60%), Gaps = 33/167 (19%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           GK CDEE  MCDGTN FWCEHGG+C EI+QGE Y C CP G+ GEHCEHSG PCG +FCF
Sbjct: 62  GKLCDEEQVMCDGTNSFWCEHGGRCNEIIQGENYTCDCPPGFIGEHCEHSGAPCGNMFCF 121

Query: 61  HEAQCLALSQVHNACDCPPDWKGSADCSLPT----LSQTA-------------------- 96
           H+ +C+   +  + CDCP +W+GSA+CSLPT    L+ TA                    
Sbjct: 122 HQGECM---KEDSLCDCPSNWRGSANCSLPTKIDVLNNTAPSTDATAYTDGGNEWLVPFV 178

Query: 97  -GAVVGGAI-----YAKKLFKKKSNTAPRFQQLSSVQTQDILDGDEN 137
              +V GA+       KKL+KK+   A +FQQLS VQ Q   D D++
Sbjct: 179 SAVIVMGALGIAVSLGKKLYKKRRAGAMKFQQLSHVQVQGFSDDDDD 225

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168066956|ref|XP_001785395.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663017|gb|EDQ49808.1| predicted protein [Physcomitrella patens subsp. patens]

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 28/152 (18%)

Query: 1   GKFCDEEMTMCDGTNE--FWC---EHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCG 55
           G+FCD     C  + +  FWC    +   C +   G    C C  GY+G+ CE +GT CG
Sbjct: 63  GQFCDLPSHYCSESPDLSFWCVDNNNNSTCGKKEDGTP-TCICQLGYSGDRCEFAGTLCG 121

Query: 56  QIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTLSQTA---------GAVVGG---- 102
             +C++ A C+       +CDCP  W+G+A+C+L T  +++         G ++ G    
Sbjct: 122 VGYCYNNATCVD----GKSCDCPLGWQGNANCTLATPEKSSSGSGIKWWGGLLITGAVVA 177

Query: 103 -----AIYAKKLFKKKSNTAPRFQQLSSVQTQ 129
                  +  K +K+K +   RF +L   Q +
Sbjct: 178 AISVAVAFGLKKYKEKMDGVNRFNELKKSQMR 209

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449267132|gb|EMC78098.1| Protocadherin Fat 2 [Columba livia]

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 19   CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCP 78
            C + G C E   G  Y C CP  ++GEHCE   +PC    C H   C  LS    +C C 
Sbjct: 3958 CLNNGMCSE-THGGGYTCICPGLFSGEHCELGDSPCESKPCLHGGTC-TLSATGYSCHC- 4014

Query: 79   PDW------KGSADCSLPTLSQTA 96
            PDW      +GS  C  P+  Q A
Sbjct: 4015 PDWYLGESNQGSIHCICPSDYQGA 4038

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354501146|ref|XP_003512654.1| PREDICTED: delta-like protein 4-like [Cricetulus griseus]

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           G  C+ E++ CD      C +GG C++  Q + Y C CP GY G+HCEHS   C    CF
Sbjct: 243 GVDCELELSKCDSNP---CRNGGSCKD--QEDGYHCLCPPGYYGQHCEHSTLTCADSPCF 297

Query: 61  HEAQCLALSQ-VHNACDCPPDWKGS 84
           +   C   +Q    AC+CPP++ GS
Sbjct: 298 NGGSCRERNQGASYACECPPNFTGS 322

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444723716|gb|ELW64355.1| Protocadherin Fat 2 [Tupaia chinensis]

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 6    EEMTMC----DGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFH 61
            + +T C    DG ++  C +GG C +  QG  Y CKCP  ++G+HCE     C    C  
Sbjct: 4114 QALTQCCVHSDGCSQNPCLNGGMCSQ-TQGSGYVCKCPPQFSGKHCERGRENCTSTSCLE 4172

Query: 62   EAQCLALSQVHNACDCPPDWKG 83
               C++ S    +CDCP  + G
Sbjct: 4173 GGTCIS-SPEGASCDCPHPYTG 4193

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119612872|gb|EAW92466.1| delta-like 4 (Drosophila) [Homo sapiens]

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           G  C+ E++ CD      C +GG C++  Q + Y C CP GY G HCEHS   C    CF
Sbjct: 318 GVDCELELSECDSNP---CRNGGSCKD--QEDGYHCLCPPGYYGLHCEHSTLSCADSPCF 372

Query: 61  HEAQCLALSQVHN-ACDCPPDWKGS 84
           +   C   +Q  N AC+CPP++ GS
Sbjct: 373 NGGSCRERNQGANYACECPPNFTGS 397

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|9506545|ref|NP_061947.1| delta-like protein 4 precursor [Homo sapiens] gi|13431490|sp|Q9NR61.1|DLL4_HUMAN RecName: Full=Delta-like protein 4; AltName: Full=Drosophila Delta homolog 4; Short=Delta4; Flags: Precursor gi|8568084|gb|AAF76427.1|AF253468_1 notch ligand DLL4 [Homo sapiens] gi|10567110|dbj|BAB16085.1| notch ligand delta-2 [Homo sapiens] gi|11463872|dbj|BAB18581.1| Delta-4 [Homo sapiens] gi|37182906|gb|AAQ89253.1| DLL4 [Homo sapiens] gi|76827108|gb|AAI06951.1| Delta-like 4 (Drosophila) [Homo sapiens]

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           G  C+ E++ CD      C +GG C++  Q + Y C CP GY G HCEHS   C    CF
Sbjct: 318 GVDCELELSECDSNP---CRNGGSCKD--QEDGYHCLCPPGYYGLHCEHSTLSCADSPCF 372

Query: 61  HEAQCLALSQVHN-ACDCPPDWKGS 84
           +   C   +Q  N AC+CPP++ GS
Sbjct: 373 NGGSCRERNQGANYACECPPNFTGS 397

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224067665|ref|XP_002195148.1| PREDICTED: protocadherin Fat 2 [Taeniopygia guttata]

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 27/155 (17%)

Query: 1    GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
            G+ C+   + C+      C HGG C     G  Y C CP  Y GE CE     C    C 
Sbjct: 3984 GEHCELGDSPCESKP---CLHGGTCTLSATG--YSCHCPDWYLGERCEKLAEECQDNPCR 4038

Query: 61   HEAQCL-ALSQVHNACDCPPDWKGSADCSLPT----------------LSQTAGAVVGGA 103
            +  +C+ +   VH  C CPPD++G A C+ P                 +++ A  V+G A
Sbjct: 4039 NAGRCVSSRGSVH--CICPPDYQG-AYCTQPIITPAIVPTQWALGPEEMAEIAAGVLGAA 4095

Query: 104  IYAKK--LFKKKSNTAPRFQQLSSVQTQDILDGDE 136
            I A    L +K+     +  +  + +  D+L   E
Sbjct: 4096 ILAAAFVLVRKRCRQRAKAHKPVAREDPDLLSKSE 4130

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|114656421|ref|XP_510318.2| PREDICTED: delta-like protein 4 [Pan troglodytes] gi|397512645|ref|XP_003826651.1| PREDICTED: delta-like protein 4 [Pan paniscus]

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           G  C+ E++ CD      C +GG C++  Q + Y C CP GY G HCEHS   C    CF
Sbjct: 318 GVDCELELSECDSNP---CRNGGSCKD--QEDGYHCLCPPGYYGLHCEHSTLSCADSPCF 372

Query: 61  HEAQCLALSQVHN-ACDCPPDWKGS 84
           +   C   +Q  N AC+CPP++ GS
Sbjct: 373 NGGSCRERNQGANYACECPPNFTGS 397

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
UNIPROTKB|Q9NR61	685	DLL4 "Delta-like protein 4" [H	0.586	0.118	0.420	5e-13
UNIPROTKB|E2R9U3	685	DLL4 "Delta-like protein" [Can	0.586	0.118	0.420	8.2e-13
UNIPROTKB|Q0V7L8	685	DLL4 "Delta-like protein" [Bos	0.586	0.118	0.409	1.3e-12
RGD|1309740	686	Dll4 "delta-like 4 (Drosophila	0.586	0.118	0.386	1.3e-12
UNIPROTKB|F1SSU8	685	DLL4 "Delta-like protein" [Sus	0.586	0.118	0.409	1.7e-12
MGI|MGI:1859388	686	Dll4 "delta-like 4 (Drosophila	0.586	0.118	0.386	2.2e-12
UNIPROTKB|F1P0R6	721	DLL4 "Delta-like protein" [Gal	0.586	0.112	0.397	7.5e-11
ZFIN|ZDB-GENE-000125-4	664	dlc "deltaC" [Danio rerio (tax	0.586	0.121	0.367	2.3e-10
UNIPROTKB|D4A2G8	332	Dlk1 "Protein Dlk1" [Rattus no	0.644	0.268	0.33	2.8e-10
RGD|619931	383	Dlk1 "delta-like 1 homolog (Dr	0.644	0.232	0.33	3.9e-10

UNIPROTKB|Q9NR61 DLL4 "Delta-like protein 4" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 5.0e-13, P = 5.0e-13
 Identities = 37/88 (42%), Positives = 51/88 (57%)

Query:     1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
             G  C+ E++ CD +N   C +GG C++  Q + Y C CP GY G HCEHS   C    CF
Sbjct:   318 GVDCELELSECD-SNP--CRNGGSCKD--QEDGYHCLCPPGYYGLHCEHSTLSCADSPCF 372

Query:    61 HEAQCLALSQVHN-ACDCPPDWKGSADC 87
             +   C   +Q  N AC+CPP++ GS +C
Sbjct:   373 NGGSCRERNQGANYACECPPNFTGS-NC 399

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005112 "Notch binding" evidence=IEA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0050767 "regulation of neurogenesis" evidence=IEA

GO:0072554 "blood vessel lumenization" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0008015 "blood circulation" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0007220 "Notch receptor processing" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0001569 "patterning of blood vessels" evidence=ISS

GO:0003208 "cardiac ventricle morphogenesis" evidence=ISS

GO:0003209 "cardiac atrium morphogenesis" evidence=ISS

GO:0003222 "ventricular trabecula myocardium morphogenesis" evidence=ISS

GO:0003344 "pericardium morphogenesis" evidence=ISS

GO:0061314 "Notch signaling involved in heart development" evidence=ISS

GO:0035912 "dorsal aorta morphogenesis" evidence=ISS

GO:0001525 "angiogenesis" evidence=ISS

GO:0001974 "blood vessel remodeling" evidence=ISS

UNIPROTKB|E2R9U3 DLL4 "Delta-like protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 8.2e-13, P = 8.2e-13
 Identities = 37/88 (42%), Positives = 50/88 (56%)

Query:     1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
             G  C+ E++ CD +N   C +GG C++  Q + Y C CP GY G HCEHS   C    CF
Sbjct:   318 GVDCELELSECD-SNP--CRNGGSCKD--QEDGYRCLCPPGYYGLHCEHSTLSCADSPCF 372

Query:    61 HEAQCLALSQ-VHNACDCPPDWKGSADC 87
             +   C   SQ    AC+CPP++ GS +C
Sbjct:   373 NGGSCRERSQGASYACECPPNFMGS-NC 399

GO:0072554 "blood vessel lumenization" evidence=IEA

GO:0061314 "Notch signaling involved in heart development" evidence=IEA

GO:0050767 "regulation of neurogenesis" evidence=IEA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0035912 "dorsal aorta morphogenesis" evidence=IEA

GO:0005112 "Notch binding" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0003222 "ventricular trabecula myocardium morphogenesis" evidence=IEA

GO:0003209 "cardiac atrium morphogenesis" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q0V7L8 DLL4 "Delta-like protein" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 36/88 (40%), Positives = 50/88 (56%)

Query:     1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
             G  C+ E++ CD +N   C +GG C++  Q + Y C CP GY G HCEHS   C    CF
Sbjct:   318 GVDCELELSECD-SNP--CRNGGSCKD--QEDGYHCLCPPGYYGLHCEHSTLSCADSPCF 372

Query:    61 HEAQCLALSQ-VHNACDCPPDWKGSADC 87
             +   C   +Q    AC+CPP++ GS +C
Sbjct:   373 NGGSCRERNQGTSYACECPPNFTGS-NC 399

GO:0072554 "blood vessel lumenization" evidence=IEA

GO:0061314 "Notch signaling involved in heart development" evidence=IEA

GO:0050767 "regulation of neurogenesis" evidence=IEA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0035912 "dorsal aorta morphogenesis" evidence=IEA

GO:0005112 "Notch binding" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0003222 "ventricular trabecula myocardium morphogenesis" evidence=IEA

GO:0003209 "cardiac atrium morphogenesis" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

RGD|1309740 Dll4 "delta-like 4 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 34/88 (38%), Positives = 49/88 (55%)

Query:     1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
             G+ C+ E++ C  +N   C +GG C++      Y C CP GY G+HCEHS   C    CF
Sbjct:   319 GEHCELELSKC-ASNP--CRNGGSCKD--HENSYHCLCPPGYYGQHCEHSTLTCADSPCF 373

Query:    61 HEAQCLALSQ-VHNACDCPPDWKGSADC 87
             +   C   +Q    AC+CPP++ GS +C
Sbjct:   374 NGGSCRERNQGASYACECPPNFTGS-NC 400

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0001525 "angiogenesis" evidence=ISO

GO:0001569 "patterning of blood vessels" evidence=IEA;ISO

GO:0001974 "blood vessel remodeling" evidence=IEA;ISO

GO:0003208 "cardiac ventricle morphogenesis" evidence=ISO

GO:0003209 "cardiac atrium morphogenesis" evidence=IEA;ISO

GO:0003222 "ventricular trabecula myocardium morphogenesis" evidence=IEA;ISO

GO:0003344 "pericardium morphogenesis" evidence=IEA;ISO

GO:0005112 "Notch binding" evidence=IEA;ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035912 "dorsal aorta morphogenesis" evidence=IEA;ISO

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IEA;ISO

GO:0050767 "regulation of neurogenesis" evidence=IEA;ISO

GO:0061314 "Notch signaling involved in heart development" evidence=IEA;ISO

GO:0072554 "blood vessel lumenization" evidence=IEA;ISO

UNIPROTKB|F1SSU8 DLL4 "Delta-like protein" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 36/88 (40%), Positives = 50/88 (56%)

Query:     1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
             G  C+ E++ CD +N   C +GG C++  Q + Y C CP GY G HCEHS   C    CF
Sbjct:   318 GVDCELELSECD-SNP--CRNGGSCKD--QEDGYRCLCPPGYYGLHCEHSTLTCADSPCF 372

Query:    61 HEAQCLALSQ-VHNACDCPPDWKGSADC 87
             +   C   +Q    AC+CPP++ GS +C
Sbjct:   373 NGGSCQERNQGASYACECPPNFTGS-NC 399

GO:0072554 "blood vessel lumenization" evidence=IEA

GO:0061314 "Notch signaling involved in heart development" evidence=IEA

GO:0050767 "regulation of neurogenesis" evidence=IEA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0035912 "dorsal aorta morphogenesis" evidence=IEA

GO:0005112 "Notch binding" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0003222 "ventricular trabecula myocardium morphogenesis" evidence=IEA

GO:0003209 "cardiac atrium morphogenesis" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:1859388 Dll4 "delta-like 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 176 (67.0 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 34/88 (38%), Positives = 50/88 (56%)

Query:     1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
             G+ C+  ++ C  +N   C +GG C++  Q   Y C CP GY G+HCEHS   C    CF
Sbjct:   319 GEHCELGLSKC-ASNP--CRNGGSCKD--QENSYHCLCPPGYYGQHCEHSTLTCADSPCF 373

Query:    61 HEAQCLALSQVHN-ACDCPPDWKGSADC 87
             +   C   +Q  + AC+CPP++ GS +C
Sbjct:   374 NGGSCRERNQGSSYACECPPNFTGS-NC 400

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0001569 "patterning of blood vessels" evidence=IMP

GO:0001974 "blood vessel remodeling" evidence=IMP

GO:0003208 "cardiac ventricle morphogenesis" evidence=IMP

GO:0003209 "cardiac atrium morphogenesis" evidence=IMP

GO:0003222 "ventricular trabecula myocardium morphogenesis" evidence=IMP

GO:0003344 "pericardium morphogenesis" evidence=IMP

GO:0005112 "Notch binding" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0007154 "cell communication" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0035912 "dorsal aorta morphogenesis" evidence=IMP

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IDA

GO:0050767 "regulation of neurogenesis" evidence=IMP

GO:0061314 "Notch signaling involved in heart development" evidence=IMP

GO:0072554 "blood vessel lumenization" evidence=IMP

UNIPROTKB|F1P0R6 DLL4 "Delta-like protein" [Gallus gallus (taxid:9031)]

 Score = 162 (62.1 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 35/88 (39%), Positives = 45/88 (51%)

Query:     1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
             G  C+ E++ CD +N   C +GG C ++  G  Y C CP GY G HCEHS   C    CF
Sbjct:   352 GVDCEHEISECD-SNP--CRNGGSCTDMENG--YRCVCPPGYYGAHCEHSALTCIDSPCF 406

Query:    61 HEAQCLALSQ-VHNACDCPPDWKGSADC 87
             +   CL   Q     C CP  + GS +C
Sbjct:   407 NGGTCLEKEQGASYTCVCPFGFTGS-NC 433

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001974 "blood vessel remodeling" evidence=IEA

GO:0003209 "cardiac atrium morphogenesis" evidence=IEA

GO:0003222 "ventricular trabecula myocardium morphogenesis" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0005112 "Notch binding" evidence=IEA

GO:0035912 "dorsal aorta morphogenesis" evidence=IEA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0050767 "regulation of neurogenesis" evidence=IEA

GO:0061314 "Notch signaling involved in heart development" evidence=IEA

GO:0072554 "blood vessel lumenization" evidence=IEA

ZFIN|ZDB-GENE-000125-4 dlc "deltaC" [Danio rerio (taxid:7955)]

 Score = 157 (60.3 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 32/87 (36%), Positives = 45/87 (51%)

Query:     1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
             GK C+ E   CD +N   C++GG C +  Q   Y C CP G+ G++CE S   C    CF
Sbjct:   299 GKNCEIETNECD-SNP--CKNGGSCND--QENDYTCTCPQGFYGKNCEVSAMTCADGPCF 353

Query:    61 HEAQCLALSQVHNACDCPPDWKGSADC 87
             +   C+       +C CPP + GS +C
Sbjct:   354 NGGTCMEKGSGSYSCRCPPGYMGS-NC 379

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEP;IGI;IMP

GO:0030165 "PDZ domain binding" evidence=IDA;IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0060218 "hematopoietic stem cell differentiation" evidence=IGI;IMP

GO:0048666 "neuron development" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IGI

GO:0001757 "somite specification" evidence=IGI

GO:0030154 "cell differentiation" evidence=IEA

GO:0042802 "identical protein binding" evidence=IDA

UNIPROTKB|D4A2G8 Dlk1 "Protein Dlk1" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 33/100 (33%), Positives = 51/100 (51%)

Query:     1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPC---GQI 57
             GKFC+ ++  C  T    C + G C ++ +G+ Y+C C  G++G+ C+H   PC   G  
Sbjct:    82 GKFCEIDIRACTSTP---CANNGTCVDLEKGQ-YECSCTPGFSGKDCQHKAGPCVINGSP 137

Query:    58 FCFHEAQCLALS--QVHNACDCPPDWKGSADCSLPTLSQT 95
              C H   C+       H +C CPP + G+  C + T S T
Sbjct:   138 -CQHGGACVDDEGRASHASCLCPPGFSGNF-CEIVTNSCT 175

GO:0005509 "calcium ion binding" evidence=IEA

RGD|619931 Dlk1 "delta-like 1 homolog (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 33/100 (33%), Positives = 51/100 (51%)

Query:     1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPC---GQI 57
             GKFC+ ++  C  T    C + G C ++ +G+ Y+C C  G++G+ C+H   PC   G  
Sbjct:    82 GKFCEIDIRACTSTP---CANNGTCVDLEKGQ-YECSCTPGFSGKDCQHKAGPCVINGSP 137

Query:    58 FCFHEAQCLALS--QVHNACDCPPDWKGSADCSLPTLSQT 95
              C H   C+       H +C CPP + G+  C + T S T
Sbjct:   138 -CQHGGACVDDEGRASHASCLCPPGFSGNF-CEIVTNSCT 175

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009790 "embryo development" evidence=ISO

GO:0009791 "post-embryonic development" evidence=ISO

GO:0009897 "external side of plasma membrane" evidence=ISO

GO:0030154 "cell differentiation" evidence=IDA

GO:0045746 "negative regulation of Notch signaling pathway" evidence=ISO

GO:0048706 "embryonic skeletal system development" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
KOG1219	4289	consensus Uncharacterized conserved protein, conta	99.62
KOG1219	4289	consensus Uncharacterized conserved protein, conta	99.56
KOG4289	2531	consensus Cadherin EGF LAG seven-pass G-type recep	99.49
KOG4289	2531	consensus Cadherin EGF LAG seven-pass G-type recep	99.13
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.49
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	98.42
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.39
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.31
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.21
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	98.2
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	98.19
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.93
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.81
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.81
smart00181	35	EGF Epidermal growth factor-like domain.	97.77
KOG1217	487	consensus Fibrillins and related proteins containi	97.73
smart00181	35	EGF Epidermal growth factor-like domain.	97.56
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.54
KOG1225	525	consensus Teneurin-1 and related extracellular mat	97.53
KOG1217	487	consensus Fibrillins and related proteins containi	97.3
KOG1225	525	consensus Teneurin-1 and related extracellular mat	97.27
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.23
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	96.98
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.97
KOG4260	350	consensus Uncharacterized conserved protein [Funct	96.93
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.78
PF12662	24	cEGF: Complement Clr-like EGF-like	96.51
KOG4260	350	consensus Uncharacterized conserved protein [Funct	96.48
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.44
KOG1226	783	consensus Integrin beta subunit (N-terminal portio	96.38
smart00051	63	DSL delta serrate ligand.	96.26
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.13
KOG1226	783	consensus Integrin beta subunit (N-terminal portio	95.62
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	95.52
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	94.78
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	94.77
KOG3516	1306	consensus Neurexin IV [Signal transduction mechani	94.17
PHA02887	126	EGF-like protein; Provisional	94.13
PHA02887	126	EGF-like protein; Provisional	93.78
KOG3516	1306	consensus Neurexin IV [Signal transduction mechani	93.73
KOG3514	1591	consensus Neurexin III-alpha [Signal transduction	93.11
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	91.39
KOG3514	1591	consensus Neurexin III-alpha [Signal transduction	91.34
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	91.11
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	89.79
PF01414	63	DSL: Delta serrate ligand; InterPro: IPR001774 Lig	89.11
KOG1836	1705	consensus Extracellular matrix glycoprotein Lamini	86.46
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	85.66
PF12955	103	DUF3844: Domain of unknown function (DUF3844); Int	81.99
PF00954	110	S_locus_glycop: S-locus glycoprotein family; Inter	81.27
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	80.99
KOG3509	964	consensus Basement membrane-specific heparan sulfa	80.84
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	80.74

>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]

Probab=99.62  E-value=4.6e-16  Score=129.25  Aligned_cols=82  Identities=30%  Similarity=0.841  Sum_probs=62.1

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccC-CCCCCCCCCCCCCeeeeCCCCCeeeeCCC
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS-GTPCGQIFCFHEAQCLALSQVHNACDCPP   79 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~-~~~C~~~~C~~~g~C~~~~~~~~~C~C~~   79 (138)
                      |++||+++++|.++   ||.+|++|+...++  |.|.|+.||+|..|+.. ++.|..++|.++|.|.+.. |.|.|.|.+
T Consensus      3896 G~~CEi~~epC~sn---PC~~GgtCip~~n~--f~CnC~~gyTG~~Ce~~Gi~eCs~n~C~~gg~C~n~~-gsf~CncT~ 3969 (4289)
T KOG1219|consen 3896 GNHCEIDLEPCASN---PCLTGGTCIPFYNG--FLCNCPNGYTGKRCEARGISECSKNVCGTGGQCINIP-GSFHCNCTP 3969 (4289)
T ss_pred             CcccccccccccCC---CCCCCCEEEecCCC--eeEeCCCCccCceeecccccccccccccCCceeeccC-CceEeccCh
Confidence            56777777777777   77777777777777  77777777777777765 6777777777777777776 577777777


Q ss_pred             CCCCCCCCCC
Q 044268           80 DWKGSADCSL   89 (138)
Q Consensus        80 g~~g~~~C~~   89 (138)
                      |+.|. .|..
T Consensus      3970 g~~gr-~c~~ 3978 (4289)
T KOG1219|consen 3970 GILGR-TCCA 3978 (4289)
T ss_pred             hHhcc-cCcc
Confidence            77777 6643

>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]

Probab=99.56  E-value=7.5e-15  Score=122.33  Aligned_cols=77  Identities=34%  Similarity=0.897  Sum_probs=71.8

Q ss_pred             ccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCC
Q 044268            8 MTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADC   87 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C   87 (138)
                      .++|..+   ||+|+|.|...+.+ +|.|.|++.|.|++|+++.++|.++||.+||+|.... ++|.|.|+.||+|. .|
T Consensus      3864 ~d~C~~n---pCqhgG~C~~~~~g-gy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~-n~f~CnC~~gyTG~-~C 3937 (4289)
T KOG1219|consen 3864 TDPCNDN---PCQHGGTCISQPKG-GYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFY-NGFLCNCPNGYTGK-RC 3937 (4289)
T ss_pred             ccccccC---cccCCCEecCCCCC-ceEEeCcccccCcccccccccccCCCCCCCCEEEecC-CCeeEeCCCCccCc-ee
Confidence            3889999   99999999988766 6999999999999999999999999999999999988 59999999999999 99


Q ss_pred             CCC
Q 044268           88 SLP   90 (138)
Q Consensus        88 ~~~   90 (138)
                      +..
T Consensus      3938 e~~ 3940 (4289)
T KOG1219|consen 3938 EAR 3940 (4289)
T ss_pred             ecc
Confidence            876

>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]

Probab=99.49  E-value=6.9e-14  Score=113.37  Aligned_cols=93  Identities=30%  Similarity=0.774  Sum_probs=80.6

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCC--CCCCCCCCCCCeeeeCCCCCeeeeCC
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGT--PCGQIFCFHEAQCLALSQVHNACDCP   78 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~--~C~~~~C~~~g~C~~~~~~~~~C~C~   78 (138)
                      |..||+++|.|.+.   ||.|++.|....++  |+|.|.+||+|.+|+++..  .|.+..|.|+|+|.+...++|.|.|+
T Consensus      1232 gd~CeTeiDlCYs~---pC~nng~C~srEgg--YtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~Cp 1306 (2531)
T KOG4289|consen 1232 GDYCETEIDLCYSG---PCGNNGRCRSREGG--YTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCHCP 1306 (2531)
T ss_pred             cccccchhHhhhcC---CCCCCCceEEecCc--eeEEecCCccccceeeecccCccccceecCCCEEeecCCCceeccCC
Confidence            56899999999999   99999999999999  9999999999999997643  58888999999999988789999999


Q ss_pred             CC-CCCCCCCCCCCCCCCCCce
Q 044268           79 PD-WKGSADCSLPTLSQTAGAV   99 (138)
Q Consensus        79 ~g-~~g~~~C~~~~~~~~~~~~   99 (138)
                      .| |.+. +|+.....+...++
T Consensus      1307 ~ge~e~p-rC~v~trSFp~~sf 1327 (2531)
T KOG4289|consen 1307 YGEFEDP-RCEVTTRSFPPESF 1327 (2531)
T ss_pred             CcccCCC-ceEEEeeccCchhe
Confidence            87 4555 89987777664443

>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]

Probab=99.13  E-value=3.1e-11  Score=98.48  Aligned_cols=80  Identities=26%  Similarity=0.651  Sum_probs=68.4

Q ss_pred             ccCccCCCCccCCCCCEEeec----------------------CCCcceEeeCCCCCcCCCCccCCCCCCCCCCCCCCee
Q 044268            8 MTMCDGTNEFWCEHGGKCEEI----------------------VQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQC   65 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~~----------------------~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C   65 (138)
                      -+.|..-   ||.|..+|+..                      .+  ++.|.|++||+|..|+..++.|-+.||.++|.|
T Consensus      1179 DniClrE---PCenymkCvsvlrFdssapf~~s~s~lfRpi~pvn--glrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C 1253 (2531)
T KOG4289|consen 1179 DNICLRE---PCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVN--GLRCRCPPGFTGDYCETEIDLCYSGPCGNNGRC 1253 (2531)
T ss_pred             Cchhhcc---hhHHHHhhhhheeecccCccccccceeeeeccccC--ceeEeCCCCCCcccccchhHhhhcCCCCCCCce
Confidence            4567777   89988888532                      23  499999999999999999999999999999999


Q ss_pred             eeCCCCCeeeeCCCCCCCCCCCCCCCCCC
Q 044268           66 LALSQVHNACDCPPDWKGSADCSLPTLSQ   94 (138)
Q Consensus        66 ~~~~~~~~~C~C~~g~~g~~~C~~~~~~~   94 (138)
                      .... ++|.|.|.+||+|. .||......
T Consensus      1254 ~srE-ggYtCeCrpg~tGe-hCEvs~~ag 1280 (2531)
T KOG4289|consen 1254 RSRE-GGYTCECRPGFTGE-HCEVSARAG 1280 (2531)
T ss_pred             EEec-CceeEEecCCcccc-ceeeecccC
Confidence            9998 69999999999999 999765444

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.49  E-value=6.8e-08  Score=46.45  Aligned_cols=31  Identities=42%  Similarity=1.256  Sum_probs=26.4

Q ss_pred             ccCCCCccCCCCCEEeecC-CCcceEeeCCCCCcCCC
Q 044268           11 CDGTNEFWCEHGGKCEEIV-QGEMYDCKCPAGYAGEH   46 (138)
Q Consensus        11 C~~~~~~pC~~~~~C~~~~-~~~~~~C~C~~g~~g~~   46 (138)
                      |.++   ||.|+++|++.. ..  |.|.|++||.|.+
T Consensus         1 C~~~---~C~n~g~C~~~~~~~--y~C~C~~G~~G~~   32 (32)
T PF00008_consen    1 CSSN---PCQNGGTCIDLPGGG--YTCECPPGYTGKR   32 (32)
T ss_dssp             TTTT---SSTTTEEEEEESTSE--EEEEEBTTEESTT
T ss_pred             CCCC---cCCCCeEEEeCCCCC--EEeECCCCCccCC
Confidence            4455   999999999988 66  9999999999863

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=98.42  E-value=5.5e-07  Score=44.93  Aligned_cols=36  Identities=42%  Similarity=1.164  Sum_probs=31.1

Q ss_pred             ccCccC-CCCccCCCCCEEeecCCCcceEeeCCCCCc-CCCCc
Q 044268            8 MTMCDG-TNEFWCEHGGKCEEIVQGEMYDCKCPAGYA-GEHCE   48 (138)
Q Consensus         8 ~~~C~~-~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~-g~~C~   48 (138)
                      +++|.. .   +|.+++.|++..++  |.|.|++||. |..|+
T Consensus         2 ~~~C~~~~---~C~~~~~C~~~~g~--~~C~C~~g~~~g~~C~   39 (39)
T smart00179        2 IDECASGN---PCQNGGTCVNTVGS--YRCECPPGYTDGRNCE   39 (39)
T ss_pred             cccCcCCC---CcCCCCEeECCCCC--eEeECCCCCccCCcCC
Confidence            577876 6   89999999999988  9999999998 87763

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.39  E-value=1.7e-07  Score=45.02  Aligned_cols=31  Identities=29%  Similarity=0.850  Sum_probs=27.0

Q ss_pred             CCCCCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           54 CGQIFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        54 C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      |.+.||.++|+|+....+.|.|.|++||+|+
T Consensus         1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            4567999999999887448999999999997

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.31  E-value=1.9e-06  Score=68.40  Aligned_cols=59  Identities=25%  Similarity=0.723  Sum_probs=49.1

Q ss_pred             EEeecCCCcceEeeCCCCCcC--CCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCC
Q 044268           24 KCEEIVQGEMYDCKCPAGYAG--EHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSA   85 (138)
Q Consensus        24 ~C~~~~~~~~~~C~C~~g~~g--~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~   85 (138)
                      .|+...++ .|+|.|.+||.|  ..|. +.+.|.++-|...++|.++. +.+.|.|.+||.|++
T Consensus       800 ~c~~hGgs-~y~C~CLPGfsGDG~~c~-dvDeC~psrChp~A~Cyntp-gsfsC~C~pGy~GDG  860 (1289)
T KOG1214|consen  800 RCVHHGGS-TYSCACLPGFSGDGHQCT-DVDECSPSRCHPAATCYNTP-GSFSCRCQPGYYGDG  860 (1289)
T ss_pred             EEEecCCc-eEEEeecCCccCCccccc-cccccCccccCCCceEecCC-CcceeecccCccCCC
Confidence            45555544 499999999986  4563 66999999999999999999 699999999999984

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.21  E-value=1.1e-06  Score=44.88  Aligned_cols=34  Identities=29%  Similarity=0.861  Sum_probs=29.8

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      |+|+|... ++.|..++.|+++.++  |.|.|++||.
T Consensus         1 DidEC~~~-~~~C~~~~~C~N~~Gs--y~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEG-PHNCPENGTCVNTEGS--YSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTT-SSSSSTTSEEEEETTE--EEEEESTTEE
T ss_pred             CccccCCC-CCcCCCCCEEEcCCCC--EEeeCCCCcE
Confidence            47888876 4579889999999999  9999999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=98.20  E-value=3.4e-06  Score=41.53  Aligned_cols=36  Identities=42%  Similarity=1.154  Sum_probs=30.6

Q ss_pred             ccCccC-CCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCc
Q 044268            8 MTMCDG-TNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCE   48 (138)
Q Consensus         8 ~~~C~~-~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~   48 (138)
                      +++|.. .   +|.+++.|.+..+.  |.|.|+.+|.|..|+
T Consensus         2 ~~~C~~~~---~C~~~~~C~~~~~~--~~C~C~~g~~g~~C~   38 (38)
T cd00054           2 IDECASGN---PCQNGGTCVNTVGS--YRCSCPPGYTGRNCE   38 (38)
T ss_pred             cccCCCCC---CcCCCCEeECCCCC--eEeECCCCCcCCcCC
Confidence            466766 6   89999999998888  999999999997773

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=98.19  E-value=4e-06  Score=41.70  Aligned_cols=36  Identities=25%  Similarity=0.751  Sum_probs=30.0

Q ss_pred             CCCCCC-CCCCCCCeeeeCCCCCeeeeCCCCCC-CCCCCC
Q 044268           51 GTPCGQ-IFCFHEAQCLALSQVHNACDCPPDWK-GSADCS   88 (138)
Q Consensus        51 ~~~C~~-~~C~~~g~C~~~~~~~~~C~C~~g~~-g~~~C~   88 (138)
                      +++|.. .+|.++++|.+.. +.|.|.|+.||. |. .|+
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~-g~~~C~C~~g~~~g~-~C~   39 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTV-GSYRCECPPGYTDGR-NCE   39 (39)
T ss_pred             cccCcCCCCcCCCCEeECCC-CCeEeECCCCCccCC-cCC
Confidence            456766 7899989999887 689999999999 88 774

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.93  E-value=2.6e-05  Score=38.27  Aligned_cols=36  Identities=25%  Similarity=0.731  Sum_probs=29.4

Q ss_pred             CCCCCC-CCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCC
Q 044268           51 GTPCGQ-IFCFHEAQCLALSQVHNACDCPPDWKGSADCS   88 (138)
Q Consensus        51 ~~~C~~-~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~   88 (138)
                      +++|.. .+|.+++.|.+.. +.|.|.|+.||.|. .|+
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~-~~~~C~C~~g~~g~-~C~   38 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTV-GSYRCSCPPGYTGR-NCE   38 (38)
T ss_pred             cccCCCCCCcCCCCEeECCC-CCeEeECCCCCcCC-cCC
Confidence            355665 6898888999887 58999999999998 774

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.81  E-value=5e-05  Score=36.61  Aligned_cols=28  Identities=43%  Similarity=1.201  Sum_probs=25.1

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCC-CC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGE-HC   47 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~-~C   47 (138)
                      +|.+++.|++..+.  |.|.|+.||.|. .|
T Consensus         7 ~C~~~~~C~~~~~~--~~C~C~~g~~g~~~C   35 (36)
T cd00053           7 PCSNGGTCVNTPGS--YRCVCPPGYTGDRSC   35 (36)
T ss_pred             CCCCCCEEecCCCC--eEeECCCCCcccCCc
Confidence            89999999998887  999999999987 55

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.81  E-value=5.8e-05  Score=60.32  Aligned_cols=81  Identities=25%  Similarity=0.676  Sum_probs=56.0

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc----CCCCcc-----CCCCCCC--CCCCCC--Ceeee
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA----GEHCEH-----SGTPCGQ--IFCFHE--AQCLA   67 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~~-----~~~~C~~--~~C~~~--g~C~~   67 (138)
                      |++|. +.++|+.. +.-|-.+..|++.++.  |.|.|..+|.    +-.|-.     .++.|..  ..|...  ..|+.
T Consensus       728 gr~c~-d~~eca~~-~~~CGp~s~Cin~pg~--~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~  803 (1289)
T KOG1214|consen  728 GRNCV-DENECATG-FHRCGPNSVCINLPGS--YRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVH  803 (1289)
T ss_pred             CCCCC-ChhhhccC-CCCCCCCceeecCCCc--eeEEEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEe
Confidence            46775 67788766 3348888999999999  9999998875    345632     2234432  234332  35556


Q ss_pred             CCCCCeeeeCCCCCCCCC
Q 044268           68 LSQVHNACDCPPDWKGSA   85 (138)
Q Consensus        68 ~~~~~~~C~C~~g~~g~~   85 (138)
                      ...+.|.|.|.+||.|++
T Consensus       804 hGgs~y~C~CLPGfsGDG  821 (1289)
T KOG1214|consen  804 HGGSTYSCACLPGFSGDG  821 (1289)
T ss_pred             cCCceEEEeecCCccCCc
Confidence            554589999999999983

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.77  E-value=5.9e-05  Score=36.54  Aligned_cols=27  Identities=41%  Similarity=1.171  Sum_probs=24.1

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcC-CCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAG-EHC   47 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g-~~C   47 (138)
                      +|.++ .|++..++  |.|.|+.||.| ..|
T Consensus         7 ~C~~~-~C~~~~~~--~~C~C~~g~~g~~~C   34 (35)
T smart00181        7 PCSNG-TCINTPGS--YTCSCPPGYTGDKRC   34 (35)
T ss_pred             CCCCC-EEECCCCC--eEeECCCCCccCCcc
Confidence            89988 99998888  99999999998 665

>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=97.73  E-value=0.00011  Score=55.43  Aligned_cols=79  Identities=27%  Similarity=0.663  Sum_probs=61.0

Q ss_pred             CccCccCCCCcc-CCCCCEEeecCCCcceEeeCCCCCcCCCC--ccCCCCCC----CCCCCCCCeeee-CCCCCeeeeCC
Q 044268            7 EMTMCDGTNEFW-CEHGGKCEEIVQGEMYDCKCPAGYAGEHC--EHSGTPCG----QIFCFHEAQCLA-LSQVHNACDCP   78 (138)
Q Consensus         7 ~~~~C~~~~~~p-C~~~~~C~~~~~~~~~~C~C~~g~~g~~C--~~~~~~C~----~~~C~~~g~C~~-~~~~~~~C~C~   78 (138)
                      +++.|...   + |.++++|++....  |.|.|++||.|..|  ..+...|.    ..+|.+++.|.. .....+.|.|.
T Consensus       270 ~~~~C~~~---~~c~~~~~C~~~~~~--~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~  344 (487)
T KOG1217|consen  270 DVDSCALI---ASCPNGGTCVNVPGS--YRCTCPPGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACG  344 (487)
T ss_pred             eccccCCC---CccCCCCeeecCCCc--ceeeCCCCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCC
Confidence            67888877   4 8999999999988  99999999999987  22335663    466888888822 22136789999


Q ss_pred             CCCCCCCCCCCCC
Q 044268           79 PDWKGSADCSLPT   91 (138)
Q Consensus        79 ~g~~g~~~C~~~~   91 (138)
                      .+|.|. .|+...
T Consensus       345 ~~~~g~-~C~~~~  356 (487)
T KOG1217|consen  345 PGFTGR-RCEDSN  356 (487)
T ss_pred             CCCCCC-ccccCC
Confidence            999999 998663

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.56  E-value=0.00019  Score=34.67  Aligned_cols=32  Identities=28%  Similarity=0.863  Sum_probs=25.8

Q ss_pred             CCC-CCCCCCCeeeeCCCCCeeeeCCCCCCC-CCCCC
Q 044268           54 CGQ-IFCFHEAQCLALSQVHNACDCPPDWKG-SADCS   88 (138)
Q Consensus        54 C~~-~~C~~~g~C~~~~~~~~~C~C~~g~~g-~~~C~   88 (138)
                      |.. .+|.++ .|.+.. +.|.|.|+.||.| . .|+
T Consensus         2 C~~~~~C~~~-~C~~~~-~~~~C~C~~g~~g~~-~C~   35 (35)
T smart00181        2 CASGGPCSNG-TCINTP-GSYTCSCPPGYTGDK-RCE   35 (35)
T ss_pred             CCCcCCCCCC-EEECCC-CCeEeECCCCCccCC-ccC
Confidence            444 578888 899886 6999999999999 7 664

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.54  E-value=7e-05  Score=38.09  Aligned_cols=31  Identities=23%  Similarity=0.700  Sum_probs=26.3

Q ss_pred             CCCCCC--CCCCCCCeeeeCCCCCeeeeCCCCCC
Q 044268           51 GTPCGQ--IFCFHEAQCLALSQVHNACDCPPDWK   82 (138)
Q Consensus        51 ~~~C~~--~~C~~~g~C~~~~~~~~~C~C~~g~~   82 (138)
                      +++|..  ..|...+.|+++. |+|.|.|++||.
T Consensus         2 idEC~~~~~~C~~~~~C~N~~-Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    2 IDECAEGPHNCPENGTCVNTE-GSYSCSCPPGYE   34 (42)
T ss_dssp             SSTTTTTSSSSSTTSEEEEET-TEEEEEESTTEE
T ss_pred             ccccCCCCCcCCCCCEEEcCC-CCEEeeCCCCcE
Confidence            567764  4688889999999 799999999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]

Probab=97.53  E-value=0.00032  Score=54.08  Aligned_cols=28  Identities=21%  Similarity=0.562  Sum_probs=15.1

Q ss_pred             CCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCC
Q 044268           57 IFCFHEAQCLALSQVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        57 ~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      ..|.++|.|+ .    -.|.|.+||+|. .|+..
T Consensus       316 adC~g~G~Ci-~----G~C~C~~Gy~G~-~C~~~  343 (525)
T KOG1225|consen  316 ADCSGHGKCI-D----GECLCDEGYTGE-LCIQR  343 (525)
T ss_pred             ccCCCCCccc-C----CceEeCCCCcCC-ccccc
Confidence            3455555554 1    136666666666 66554

>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=97.30  E-value=0.00076  Score=50.97  Aligned_cols=61  Identities=34%  Similarity=0.952  Sum_probs=51.4

Q ss_pred             CEEeecCCCcceEeeCCCCCcCCCC--ccCCCCCCCCC-CCCCCeeeeCCCCCeeeeCCCCCCCCCCC
Q 044268           23 GKCEEIVQGEMYDCKCPAGYAGEHC--EHSGTPCGQIF-CFHEAQCLALSQVHNACDCPPDWKGSADC   87 (138)
Q Consensus        23 ~~C~~~~~~~~~~C~C~~g~~g~~C--~~~~~~C~~~~-C~~~g~C~~~~~~~~~C~C~~g~~g~~~C   87 (138)
                      +.|.+..+.  |.|.|++||.+..+  ..+++.|.... |.++++|.... +.|.|.|++||.|. .|
T Consensus       243 ~~c~~~~~~--~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~-~~~~C~C~~g~~g~-~~  306 (487)
T KOG1217|consen  243 GTCVNTVGS--YTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVP-GSYRCTCPPGFTGR-LC  306 (487)
T ss_pred             CcccccCCc--eeeeCCCCccccccceeeeccccCCCCccCCCCeeecCC-CcceeeCCCCCCCC-CC
Confidence            788888888  99999999998762  34677888753 99999999887 36999999999999 77

>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]

Probab=97.27  E-value=0.0009  Score=51.68  Aligned_cols=46  Identities=35%  Similarity=1.027  Sum_probs=24.8

Q ss_pred             EeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCC
Q 044268           35 DCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        35 ~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~   89 (138)
                      +|.|++||+|..|+.  ..|... |..++.+++    + .|.|++||.|. .|++
T Consensus       266 ~CIC~~Gf~G~dC~e--~~Cp~~-cs~~g~~~~----g-~CiC~~g~~G~-dCs~  311 (525)
T KOG1225|consen  266 RCICPPGFTGDDCDE--LVCPVD-CSGGGVCVD----G-ECICNPGYSGK-DCSI  311 (525)
T ss_pred             eEeCCCCCcCCCCCc--ccCCcc-cCCCceecC----C-EeecCCCcccc-cccc
Confidence            466666666666642  334333 555544432    2 46666666666 5654

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.23  E-value=0.00074  Score=32.32  Aligned_cols=28  Identities=25%  Similarity=0.673  Sum_probs=24.0

Q ss_pred             CCCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           56 QIFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        56 ~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      ..+|.+++.|.+.. +.+.|.|+.||.|.
T Consensus         5 ~~~C~~~~~C~~~~-~~~~C~C~~g~~g~   32 (36)
T cd00053           5 SNPCSNGGTCVNTP-GSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCCEEecCC-CCeEeECCCCCccc
Confidence            56788888999887 58999999999875

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=96.98  E-value=0.00024  Score=26.86  Aligned_cols=10  Identities=60%  Similarity=2.012  Sum_probs=5.3

Q ss_pred             eeCCCCCCCC
Q 044268           75 CDCPPDWKGS   84 (138)
Q Consensus        75 C~C~~g~~g~   84 (138)
                      |.|++||+|.
T Consensus         2 C~C~~G~~G~   11 (13)
T PF12661_consen    2 CQCPPGWTGP   11 (13)
T ss_dssp             EEE-TTEETT
T ss_pred             ccCcCCCcCC
Confidence            5556666555

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.97  E-value=0.00062  Score=33.41  Aligned_cols=26  Identities=31%  Similarity=0.896  Sum_probs=20.6

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGE   45 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~   45 (138)
                      .|..++.|.++.+.  |.|.|.+||.|.
T Consensus         7 ~C~~nA~C~~~~~~--~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    7 GCHPNATCTNTGGS--YTCTCKPGYEGD   32 (36)
T ss_dssp             GS-TTCEEEE-TTS--EEEEE-CEEECC
T ss_pred             CCCCCcEeecCCCC--EEeECCCCCccC
Confidence            68888999999998  999999999875

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG4260 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.00066  Score=47.91  Aligned_cols=69  Identities=16%  Similarity=0.493  Sum_probs=49.4

Q ss_pred             CCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcC--CCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCC
Q 044268            6 EEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAG--EHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWK   82 (138)
Q Consensus         6 ~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g--~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~   82 (138)
                      .|+|+|... +.||.....|+|+.++  |.|.+.+||.+  ..|+...+.|..    ....|.+.. +.|+|+|..++.
T Consensus       234 vDvnEC~~e-p~~c~~~qfCvNteGS--f~C~dk~Gy~~g~d~C~~~~d~~~~----kn~~c~ni~-~~~r~v~f~~~~  304 (350)
T KOG4260|consen  234 VDVNECQNE-PAPCKAHQFCVNTEGS--FKCEDKEGYKKGVDECQFCADVCAS----KNRPCMNID-GQYRCVCFSGLI  304 (350)
T ss_pred             ccHHHHhcC-CCCCChhheeecCCCc--eEecccccccCChHHhhhhhhhccc----CCCCcccCC-ccEEEEecccce
Confidence            378899765 5589999999999999  99999999975  234432233321    233566676 599999987754

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.78  E-value=0.0022  Score=30.58  Aligned_cols=26  Identities=35%  Similarity=0.915  Sum_probs=21.7

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHC   47 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C   47 (138)
                      .|.++|+|+...    ..|.|.+||.|..|
T Consensus         7 ~C~~~G~C~~~~----g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHGTCVSPC----GRCVCDSGYTGPDC   32 (32)
T ss_pred             ccCCCCEEeCCC----CEEECCCCCcCCCC
Confidence            699999998652    56999999999876

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=96.51  E-value=0.003  Score=27.99  Aligned_cols=18  Identities=50%  Similarity=1.311  Sum_probs=13.1

Q ss_pred             eEeeCCCCCc----CCCCccCCC
Q 044268           34 YDCKCPAGYA----GEHCEHSGT   52 (138)
Q Consensus        34 ~~C~C~~g~~----g~~C~~~~~   52 (138)
                      |.|.|++||.    |..|. +++
T Consensus         2 y~C~C~~Gy~l~~d~~~C~-DId   23 (24)
T PF12662_consen    2 YTCSCPPGYQLSPDGRSCE-DID   23 (24)
T ss_pred             EEeeCCCCCcCCCCCCccc-cCC
Confidence            8999999997    45663 443

>KOG4260 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.0047  Score=43.74  Aligned_cols=64  Identities=23%  Similarity=0.491  Sum_probs=45.9

Q ss_pred             cCCCCCEEeec---CCCcceEeeCCCCCcCCCCcc---------------------------------------------
Q 044268           18 WCEHGGKCEEI---VQGEMYDCKCPAGYAGEHCEH---------------------------------------------   49 (138)
Q Consensus        18 pC~~~~~C~~~---~~~~~~~C~C~~g~~g~~C~~---------------------------------------------   49 (138)
                      ||..+|.|...   .+.  -.|.|.+||+|..|..                                             
T Consensus       151 ~C~GnG~C~GdGsR~Gs--GkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~~~k~C~kCkkGW~l  228 (350)
T KOG4260|consen  151 PCFGNGSCHGDGSREGS--GKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSGESSKGCSKCKKGWKL  228 (350)
T ss_pred             CcCCCCcccCCCCCCCC--CcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhhcccCCCCCCChhhhccccee
Confidence            89888999632   233  6799999999886641                                             


Q ss_pred             ------CCCCCC--CCCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           50 ------SGTPCG--QIFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        50 ------~~~~C~--~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                            ++++|.  +.||...-.|+++. |+|.|.+.+||.+.
T Consensus       229 de~gCvDvnEC~~ep~~c~~~qfCvNte-GSf~C~dk~Gy~~g  270 (350)
T KOG4260|consen  229 DEEGCVDVNECQNEPAPCKAHQFCVNTE-GSFKCEDKEGYKKG  270 (350)
T ss_pred             cccccccHHHHhcCCCCCChhheeecCC-CceEecccccccCC
Confidence                  112222  34677777899988 69999999888864

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.44  E-value=0.0051  Score=29.27  Aligned_cols=27  Identities=26%  Similarity=0.794  Sum_probs=21.9

Q ss_pred             CCCCCCCeeeeCCCCCeeeeCCCCCCCCCCC
Q 044268           57 IFCFHEAQCLALSQVHNACDCPPDWKGSADC   87 (138)
Q Consensus        57 ~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C   87 (138)
                      ..|.++|+|...   ...|.|.+||+|. .|
T Consensus         6 ~~C~~~G~C~~~---~g~C~C~~g~~G~-~C   32 (32)
T PF07974_consen    6 NICSGHGTCVSP---CGRCVCDSGYTGP-DC   32 (32)
T ss_pred             CccCCCCEEeCC---CCEEECCCCCcCC-CC
Confidence            358889999854   3579999999998 65

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]

Probab=96.38  E-value=0.012  Score=47.03  Aligned_cols=80  Identities=28%  Similarity=0.716  Sum_probs=49.6

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCcc--CCCCCCC---CCCCCCCeeeeCCCCCeee
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH--SGTPCGQ---IFCFHEAQCLALSQVHNAC   75 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~--~~~~C~~---~~C~~~g~C~~~~~~~~~C   75 (138)
                      |.+||-+--.|....-..|..+|.|.-      -.|.|.+||+|..|+-  +.+.|..   ..|...|+|.     -..|
T Consensus       539 G~fCECDnfsC~r~~g~lC~g~G~C~C------G~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~-----Cg~C  607 (783)
T KOG1226|consen  539 GKFCECDNFSCERHKGVLCGGHGRCEC------GRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCE-----CGRC  607 (783)
T ss_pred             eeeeeccCcccccccCcccCCCCeEeC------CcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceee-----CCce
Confidence            456764443454332235777777742      3599999999998863  3455553   2355555553     2357


Q ss_pred             eCCCC-CCCCCCCCCCCC
Q 044268           76 DCPPD-WKGSADCSLPTL   92 (138)
Q Consensus        76 ~C~~g-~~g~~~C~~~~~   92 (138)
                      .|... |+|. .||.-..
T Consensus       608 ~C~~~~~sG~-~CE~cpt  624 (783)
T KOG1226|consen  608 KCTDPPYSGE-FCEKCPT  624 (783)
T ss_pred             EcCCCCcCcc-hhhcCCC
Confidence            77665 8999 8876443

>smart00051 DSL delta serrate ligand

Probab=96.26  E-value=0.012  Score=32.62  Aligned_cols=46  Identities=26%  Similarity=0.563  Sum_probs=32.8

Q ss_pred             eEeeCCCCCcCCCCccCCCCCCC-CCCCCCCeeeeCCCCCeeeeCCCCCCCCCCC
Q 044268           34 YDCKCPAGYAGEHCEHSGTPCGQ-IFCFHEAQCLALSQVHNACDCPPDWKGSADC   87 (138)
Q Consensus        34 ~~C~C~~g~~g~~C~~~~~~C~~-~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C   87 (138)
                      +.-.|.++|.|..|.   ..|.+ .-+..+..|...    -.|.|.+||+|. .|
T Consensus        17 ~rv~C~~~~yG~~C~---~~C~~~~d~~~~~~Cd~~----G~~~C~~Gw~G~-~C   63 (63)
T smart00051       17 IRVTCDENYYGEGCN---KFCRPRDDFFGHYTCDEN----GNKGCLEGWMGP-YC   63 (63)
T ss_pred             EEeeCCCCCcCCccC---CEeCcCccccCCccCCcC----CCEecCCCCcCC-CC
Confidence            556799999999996   44543 234566778532    348899999998 66

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.13  E-value=0.0035  Score=30.70  Aligned_cols=27  Identities=26%  Similarity=0.631  Sum_probs=21.0

Q ss_pred             CCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           57 IFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        57 ~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      ..|...+.|++.. +.+.|.|.+||.|+
T Consensus         6 ~~C~~nA~C~~~~-~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    6 GGCHPNATCTNTG-GSYTCTCKPGYEGD   32 (36)
T ss_dssp             GGS-TTCEEEE-T-TSEEEEE-CEEECC
T ss_pred             CCCCCCcEeecCC-CCEEeECCCCCccC
Confidence            4577788999998 59999999999998

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]

Probab=95.62  E-value=0.036  Score=44.53  Aligned_cols=61  Identities=31%  Similarity=0.836  Sum_probs=43.5

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCc----CCCCccCCCCCCC---CCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYA----GEHCEHSGTPCGQ---IFCFHEAQCLALSQVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~~~~~~C~~---~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      +|.+.|.|.=      -.|.|.+...    |..|+-+--.|..   ..|..+|.|.     -..|+|.+||+|. .|+-.
T Consensus       515 vCSgrG~C~C------GqC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~-----CG~CvC~~GwtG~-~C~C~  582 (783)
T KOG1226|consen  515 VCSGRGDCVC------GQCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCE-----CGRCVCNPGWTGS-ACNCP  582 (783)
T ss_pred             CcCCCCcEeC------CceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEe-----CCcEEcCCCCccC-CCCCC
Confidence            5888787753      2478877665    8888765545543   4588888884     3469999999999 87643

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=95.52  E-value=0.015  Score=28.46  Aligned_cols=22  Identities=41%  Similarity=1.084  Sum_probs=17.8

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCc
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      -|.+  .|++.+++  |.|.|++||.
T Consensus         7 gC~h--~C~~~~g~--~~C~C~~Gy~   28 (36)
T PF14670_consen    7 GCSH--ICVNTPGS--YRCSCPPGYK   28 (36)
T ss_dssp             GSSS--EEEEETTS--EEEE-STTEE
T ss_pred             CcCC--CCccCCCc--eEeECCCCCE
Confidence            3554  89999988  9999999996

...

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=94.78  E-value=0.035  Score=34.90  Aligned_cols=39  Identities=23%  Similarity=0.635  Sum_probs=28.1

Q ss_pred             CCCCCC---CCCCCCCeeeeCCC-CCeeeeCCCCCCCCCCCCCCC
Q 044268           51 GTPCGQ---IFCFHEAQCLALSQ-VHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        51 ~~~C~~---~~C~~~g~C~~~~~-~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      +..|..   +.|.+| .|.-..+ ..+.|+|..||+|. +||...
T Consensus        42 i~~Cp~ey~~YClHG-~C~yI~dl~~~~CrC~~GYtGe-RCEh~d   84 (139)
T PHA03099         42 IRLCGPEGDGYCLHG-DCIHARDIDGMYCRCSHGYTGI-RCQHVV   84 (139)
T ss_pred             cccCChhhCCEeECC-EEEeeccCCCceeECCCCcccc-ccccee
Confidence            345543   568886 8875431 37899999999999 998644

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=94.77  E-value=0.043  Score=34.49  Aligned_cols=31  Identities=35%  Similarity=0.955  Sum_probs=23.7

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      -|.|| .|.-......+.|.|..||+|..|+.
T Consensus        52 YClHG-~C~yI~dl~~~~CrC~~GYtGeRCEh   82 (139)
T PHA03099         52 YCLHG-DCIHARDIDGMYCRCSHGYTGIRCQH   82 (139)
T ss_pred             EeECC-EEEeeccCCCceeECCCCcccccccc
Confidence            47775 88755433338999999999999974

>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]

Probab=94.17  E-value=0.049  Score=45.77  Aligned_cols=40  Identities=38%  Similarity=0.876  Sum_probs=34.9

Q ss_pred             ccCccCCCCccCCCCCEEeecCCCcceEeeCC-CCCcCCCCccCCC
Q 044268            8 MTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCP-AGYAGEHCEHSGT   52 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~-~g~~g~~C~~~~~   52 (138)
                      .+.|.++   +|+++|.|..+...  |.|.|. .||.|..|...+.
T Consensus       545 ~drClPN---~CehgG~C~Qs~~~--f~C~C~~TGY~GatCHtsi~  585 (1306)
T KOG3516|consen  545 SDRCLPN---PCEHGGKCSQSWDD--FECNCELTGYKGATCHTSIY  585 (1306)
T ss_pred             ccccCCc---cccCCCcccccccc--eeEeccccccccccccCCCc
Confidence            5789888   99999999998887  999998 9999999976543

>PHA02887 EGF-like protein; Provisional

Probab=94.13  E-value=0.07  Score=33.01  Aligned_cols=38  Identities=21%  Similarity=0.615  Sum_probs=27.7

Q ss_pred             CCCCCC---CCCCCCCeeeeCCC-CCeeeeCCCCCCCCCCCCCC
Q 044268           51 GTPCGQ---IFCFHEAQCLALSQ-VHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        51 ~~~C~~---~~C~~~g~C~~~~~-~~~~C~C~~g~~g~~~C~~~   90 (138)
                      +.+|..   +.|.+ |+|.-..+ ....|.|+.||+|. +|+..
T Consensus        83 f~pC~~eyk~YCiH-G~C~yI~dL~epsCrC~~GYtG~-RCE~v  124 (126)
T PHA02887         83 FEKCKNDFNDFCIN-GECMNIIDLDEKFCICNKGYTGI-RCDEV  124 (126)
T ss_pred             ccccChHhhCEeeC-CEEEccccCCCceeECCCCcccC-CCCcc
Confidence            456653   56875 58975432 36899999999999 99853

>PHA02887 EGF-like protein; Provisional

Probab=93.78  E-value=0.081  Score=32.75  Aligned_cols=31  Identities=32%  Similarity=0.894  Sum_probs=23.2

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      -|.+ |.|.-...-..+.|.|..||+|..|+.
T Consensus        93 YCiH-G~C~yI~dL~epsCrC~~GYtG~RCE~  123 (126)
T PHA02887         93 FCIN-GECMNIIDLDEKFCICNKGYTGIRCDE  123 (126)
T ss_pred             EeeC-CEEEccccCCCceeECCCCcccCCCCc
Confidence            3774 688754433348999999999999973

>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]

Probab=93.73  E-value=0.075  Score=44.74  Aligned_cols=38  Identities=34%  Similarity=0.862  Sum_probs=31.9

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCC-CCCcCCCCccCC
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCP-AGYAGEHCEHSG   51 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~-~g~~g~~C~~~~   51 (138)
                      -.|++.   +|.|||.|+....+  |+|.|. ..|.|..|..++
T Consensus       956 GhCss~---~C~NGG~Cvery~g--ytCDCs~Tay~Gp~Cs~ei  994 (1306)
T KOG3516|consen  956 GHCSSY---PCLNGGHCVERYDG--YTCDCSRTAYDGPFCSKEI  994 (1306)
T ss_pred             cccccc---cccCCCEEEEecCc--eeeccccCcCCCCcccccc
Confidence            358888   99999999999988  999996 468899997543

>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]

Probab=93.11  E-value=0.072  Score=44.56  Aligned_cols=36  Identities=36%  Similarity=1.031  Sum_probs=32.1

Q ss_pred             CccCCCCccCCCCCEEeecCCCcceEeeCC-CCCcCCCCccC
Q 044268           10 MCDGTNEFWCEHGGKCEEIVQGEMYDCKCP-AGYAGEHCEHS   50 (138)
Q Consensus        10 ~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~-~g~~g~~C~~~   50 (138)
                      .|.++   ||+|+|.|...++.  |.|.|. .+|.|+.|+..
T Consensus       625 ~C~~n---PC~N~g~C~egwNr--fiCDCs~T~~~G~~CerE  661 (1591)
T KOG3514|consen  625 ICESN---PCQNGGKCSEGWNR--FICDCSGTGFEGRTCERE  661 (1591)
T ss_pred             ccCCC---cccCCCCccccccc--cccccccCcccCccccce
Confidence            68899   99999999999998  999996 57999999854

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=91.39  E-value=0.067  Score=35.97  Aligned_cols=63  Identities=24%  Similarity=0.636  Sum_probs=42.9

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCc---CCCCccCCCCCCC-----CCCCCCCeeeeCCC----CCeeeeCCCCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYA---GEHCEHSGTPCGQ-----IFCFHEAQCLALSQ----VHNACDCPPDWKGS   84 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~---g~~C~~~~~~C~~-----~~C~~~g~C~~~~~----~~~~C~C~~g~~g~   84 (138)
                      .|.| |..+...++  |.|.|..||.   -..|+. ...|..     .+|...+.|.....    ..|.|.|.+||.-.
T Consensus         7 ~CKN-G~LiQMSNH--fEC~Cnegfvl~~EntCE~-kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~   81 (197)
T PF06247_consen    7 ICKN-GYLIQMSNH--FECKCNEGFVLKNENTCEE-KVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILK   81 (197)
T ss_dssp             --BT-EEEEEESSE--EEEEESTTEEEEETTEEEE-----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEES
T ss_pred             cccC-CEEEEccCc--eEEEcCCCcEEcccccccc-ceecCcccccCccccchhhhhcCCCcccceeEEEecccCceee
Confidence            5775 577788888  9999999997   356753 345542     57888889987653    37999999999865

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]

Probab=91.34  E-value=0.18  Score=42.38  Aligned_cols=38  Identities=21%  Similarity=0.501  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCeeeeCCCCCeeeeCC-CCCCCCCCCCCCCC
Q 044268           53 PCGQIFCFHEAQCLALSQVHNACDCP-PDWKGSADCSLPTL   92 (138)
Q Consensus        53 ~C~~~~C~~~g~C~~~~~~~~~C~C~-~g~~g~~~C~~~~~   92 (138)
                      .|.++||.|+|.|...- ..|.|.|. .+|.|. .|+....
T Consensus       625 ~C~~nPC~N~g~C~egw-NrfiCDCs~T~~~G~-~CerE~t  663 (1591)
T KOG3514|consen  625 ICESNPCQNGGKCSEGW-NRFICDCSGTGFEGR-TCEREAT  663 (1591)
T ss_pred             ccCCCcccCCCCccccc-cccccccccCcccCc-cccceee
Confidence            78899999999999876 48999996 689999 9986543

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=91.11  E-value=0.12  Score=25.37  Aligned_cols=24  Identities=25%  Similarity=0.646  Sum_probs=17.3

Q ss_pred             cCCCCCEEeecC-CCcceEeeCCCCCc
Q 044268           18 WCEHGGKCEEIV-QGEMYDCKCPAGYA   43 (138)
Q Consensus        18 pC~~~~~C~~~~-~~~~~~C~C~~g~~   43 (138)
                      .|..++.|++.. +.  +.|.|..||.
T Consensus         6 ~cP~NA~C~~~~dG~--eecrCllgyk   30 (37)
T PF12946_consen    6 KCPANAGCFRYDDGS--EECRCLLGYK   30 (37)
T ss_dssp             ---TTEEEEEETTSE--EEEEE-TTEE
T ss_pred             cCCCCcccEEcCCCC--EEEEeeCCcc
Confidence            788889999877 55  9999999996

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=89.79  E-value=0.52  Score=32.55  Aligned_cols=37  Identities=19%  Similarity=0.513  Sum_probs=27.2

Q ss_pred             CCCCccCCCCCCC--CCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           44 GEHCEHSGTPCGQ--IFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        44 g~~C~~~~~~C~~--~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      +..|+ +.++|..  .+|..  .|.+.. |.|.|.|+.||+..
T Consensus       181 ~~~C~-~~~~C~~~~~~c~~--~C~~~~-g~~~c~c~~g~~~~  219 (224)
T cd01475         181 GKICV-VPDLCATLSHVCQQ--VCISTP-GSYLCACTEGYALL  219 (224)
T ss_pred             cccCc-CchhhcCCCCCccc--eEEcCC-CCEEeECCCCccCC
Confidence            55674 5567753  44653  799888 69999999999865

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates

Probab=89.11  E-value=0.14  Score=28.37  Aligned_cols=46  Identities=26%  Similarity=0.615  Sum_probs=20.3

Q ss_pred             eEeeCCCCCcCCCCccCCCCCCCC-CCCCCCeeeeCCCCCeeeeCCCCCCCCCCC
Q 044268           34 YDCKCPAGYAGEHCEHSGTPCGQI-FCFHEAQCLALSQVHNACDCPPDWKGSADC   87 (138)
Q Consensus        34 ~~C~C~~g~~g~~C~~~~~~C~~~-~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C   87 (138)
                      +.-.|...|.|..|.   ..|.+. --..+.+|...  |  .-.|.+||+|. .|
T Consensus        17 ~rv~C~~nyyG~~C~---~~C~~~~d~~ghy~Cd~~--G--~~~C~~Gw~G~-~C   63 (63)
T PF01414_consen   17 IRVVCDENYYGPNCS---KFCKPRDDSFGHYTCDSN--G--NKVCLPGWTGP-NC   63 (63)
T ss_dssp             ------TTEETTTT----EE---EEETTEEEEE-SS------EEE-TTEEST-TS
T ss_pred             EEEECCCCCCCcccc---CCcCCCcCCcCCcccCCC--C--CCCCCCCCcCC-CC
Confidence            677899999999996   345431 01223355422  1  24689999998 66

In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.

>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]

Probab=86.46  E-value=0.99  Score=40.21  Aligned_cols=54  Identities=22%  Similarity=0.540  Sum_probs=35.9

Q ss_pred             eCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCC-CCCeeee-CCCCCCCCCCCCCCC
Q 044268           37 KCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALS-QVHNACD-CPPDWKGSADCSLPT   91 (138)
Q Consensus        37 ~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~-~~~~~C~-C~~g~~g~~~C~~~~   91 (138)
                      .|..||.|..=.-....|.+=+|.+++.|.... .....|. |++||+|. .|+...
T Consensus       760 ~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~-rCe~c~  815 (1705)
T KOG1836|consen  760 QCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGL-RCEECA  815 (1705)
T ss_pred             hhcCCCCCccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCccc-ccccCC
Confidence            466666655332122337777788887776654 2367898 99999999 987543

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=85.66  E-value=1.2  Score=38.19  Aligned_cols=56  Identities=27%  Similarity=0.637  Sum_probs=33.4

Q ss_pred             eEe-eCCCCCcCCCCccCCCCCCCCCCCCCC--------eeeeCC-CCCeeeeCCCCCCCCCCCCCC
Q 044268           34 YDC-KCPAGYAGEHCEHSGTPCGQIFCFHEA--------QCLALS-QVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        34 ~~C-~C~~g~~g~~C~~~~~~C~~~~C~~~g--------~C~~~~-~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      +.| .|..||.|..---....|.+=||..+-        .|.... .....|+|.+||+|. +|+.-
T Consensus       885 ~~CdrCl~GyyGdP~lg~g~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~-RCe~C  950 (1758)
T KOG0994|consen  885 HSCDRCLDGYYGDPRLGSGIGCRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGS-RCEIC  950 (1758)
T ss_pred             cchhhhhccccCCcccCCCCCCCCCCCCCCCccchhccccccccccccceeeecccCcccc-chhhh
Confidence            778 689999875321122345444453321        232211 125789999999999 98753

>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species

Probab=81.99  E-value=0.95  Score=27.58  Aligned_cols=34  Identities=21%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             ccCccCCCCccCCCCCEEeecCCC---cceEeeCCCCC
Q 044268            8 MTMCDGTNEFWCEHGGKCEEIVQG---EMYDCKCPAGY   42 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~~~~~---~~~~C~C~~g~   42 (138)
                      .+.|... .+.|..+|.|......   .=|.|.|.+.+
T Consensus         5 ~~aC~~~-Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~   41 (103)
T PF12955_consen    5 NDACENA-TNNCSGHGSCVKKYGSGGGDCFACKCKPTV   41 (103)
T ss_pred             HHHHHHh-ccCCCCCceEeeccCCCccceEEEEeeccc
Confidence            3445443 3469999999876432   11667766544

It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.

>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation

Probab=81.27  E-value=2.3  Score=25.98  Aligned_cols=32  Identities=22%  Similarity=0.565  Sum_probs=24.0

Q ss_pred             CCCCCC-CCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           51 GTPCGQ-IFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        51 ~~~C~~-~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      .+.|.. ..|...+.|....  ...|.|.+||..+
T Consensus        77 ~d~Cd~y~~CG~~g~C~~~~--~~~C~Cl~GF~P~  109 (110)
T PF00954_consen   77 KDQCDVYGFCGPNGICNSNN--SPKCSCLPGFEPK  109 (110)
T ss_pred             ccCCCCccccCCccEeCCCC--CCceECCCCcCCC
Confidence            456764 7899999996542  5679999999754

This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=80.99  E-value=2.8  Score=36.13  Aligned_cols=15  Identities=33%  Similarity=1.263  Sum_probs=12.6

Q ss_pred             EeeCCCCCcCCCCcc
Q 044268           35 DCKCPAGYAGEHCEH   49 (138)
Q Consensus        35 ~C~C~~g~~g~~C~~   49 (138)
                      .|.|.+||.|+.|..
T Consensus      1085 QCqCkpGfGGR~C~q 1099 (1758)
T KOG0994|consen 1085 QCQCKPGFGGRTCSQ 1099 (1758)
T ss_pred             ceeccCCCCCcchhH
Confidence            499999999998853

>KOG3509 consensus Basement membrane-specific heparan sulfate proteoglycan (HSPG) core protein [Posttranslational modification, protein turnover, chaperones]

Probab=80.84  E-value=4.7  Score=34.10  Aligned_cols=69  Identities=28%  Similarity=0.683  Sum_probs=46.5

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCCCCC-CCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFC-FHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C-~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      +.|...   ||...+.|......  ..|.|+++|+|..|....+.|...+- ...++|.... ....+.|.++ .|.
T Consensus       407 ~~c~~~---p~~~~g~c~p~~~~--~~c~c~~g~~G~~c~d~~~~~~~~~~g~y~~t~~~~~-~~~~~~c~pg-~g~  476 (964)
T KOG3509|consen  407 DVCWRI---PCQHDGPCLQTLEG--KQCLCPPGYTGDSCEDCMNGCDRSPNGSYLGTCVPIQ-GKRCEYCGPG-AGA  476 (964)
T ss_pred             Cccccc---cCCCCccccccccc--cceeccccccCchhhccCccccccCCccccceEeccC-CCcceeecCC-CCC
Confidence            457777   89999999888877  89999999999999765555543221 1223554443 2455667777 444

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=80.74  E-value=1.8  Score=29.82  Aligned_cols=20  Identities=35%  Similarity=0.703  Sum_probs=17.5

Q ss_pred             CEEeecCCCcceEeeCCCCCcC
Q 044268           23 GKCEEIVQGEMYDCKCPAGYAG   44 (138)
Q Consensus        23 ~~C~~~~~~~~~~C~C~~g~~g   44 (138)
                      ..|.++.++  |.|.|+.||+.
T Consensus       199 ~~C~~~~g~--~~c~c~~g~~~  218 (224)
T cd01475         199 QVCISTPGS--YLCACTEGYAL  218 (224)
T ss_pred             ceEEcCCCC--EEeECCCCccC
Confidence            369999999  99999999974

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-07
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-07
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	8e-04
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	1e-06
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	2e-06
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	7e-06
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	2e-04
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	2e-06
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-06
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	2e-05
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	4e-05
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	7e-04
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	4e-05
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	6e-05
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	8e-05
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	8e-05
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	9e-05
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-04
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	1e-04
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	2e-04
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	3e-04
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	1e-04
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-04
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	2e-04
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	2e-04
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	3e-04
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-04
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	4e-04
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	5e-04
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	5e-04
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	9e-04

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           G  C+ ++  C       C++   C + +    + C C  GY G HCE +   C    C 
Sbjct: 38  GPRCEIDVNECVSNP---CQNDATCLDQIGE--FQCICMPGYEGVHCEVNTDECASSPCL 92

Query: 61  HEAQCLALSQVHN-ACDCPPDWKGS 84
           H  +C  L +++   C+CP  + G 
Sbjct: 93  HNGRC--LDKINEFQCECPTGFTGH 115

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCP 78
          CEH GKC   +    ++C+C  GY G  CE     C    C ++A CL        C C 
Sbjct: 15 CEHAGKCINTLGS--FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQ-CICM 71

Query: 79 PDWKGS 84
          P ++G 
Sbjct: 72 PGYEGV 77

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           G  C+     C  +    C H G+C + +    + C+CP G+ G  C+            
Sbjct: 76  GVHCEVNTDECASSP---CLHNGRCLDKINE--FQCECPTGFTGHLCQVDLHHILDAQKM 130

Query: 61  H 61
            
Sbjct: 131 V 131

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* Length = 53

 Score = 41.7 bits (98), Expect = 1e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
          C  +++ +C H G C  I   + Y C C  GY GE C++ 
Sbjct: 6  CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 18/84 (21%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIF------------CFHEAQCL 66
          CE+GG C   +    + C+CP G+   +C                       C +   C 
Sbjct: 8  CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE 67

Query: 67 ALSQVHN------ACDCPPDWKGS 84
                        C CP  + G 
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGFNGI 91

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 17/98 (17%)

Query: 1   GKFCDEEMTMCDGTNEFW---------CEHGGKCEEIVQGEM-----YDCKCPAGYAGEH 46
              C   + +     E           C +GG CE            Y CKCP G+ G H
Sbjct: 33  DPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIH 92

Query: 47  CEHSGTPCGQIFCFHEAQCLALSQVHN-ACDCPPDWKG 83
           C+H+   C    C +   C     V N +C+CP ++ G
Sbjct: 93  CQHNINECEVEPCKNGGIC--TDLVANYSCECPGEFMG 128

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPC 54
           G  C   +  C+      C++GG C ++V    Y C+CP  + G +C++ G   
Sbjct: 90  GIHCQHNINECEVEP---CKNGGICTDLVAN--YSCECPGEFMGRNCQYKGGGH 138

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A Length = 53

 Score = 41.3 bits (97), Expect = 2e-06
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
          C  + + +C +GG C  I   + Y C C  GY+G+ C+  
Sbjct: 6  CPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCP 78
          C H G C++ + G  Y C C  GY G +CE +   C               Q    C C 
Sbjct: 13 CLHNGSCQDSIWG--YTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCA 70

Query: 79 PDWKGSADCS 88
            ++   D  
Sbjct: 71 QGYRLGEDHK 80

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 19  CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFH---EAQCLALSQVHNAC 75
           C++GG C++ +Q   Y C C   + G +CE            +   E  C   +    +C
Sbjct: 55  CQNGGSCKDQLQS--YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSC 112

Query: 76  DCPPDWKGSAD 86
            C   +   AD
Sbjct: 113 RCHEGYSLLAD 123

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 13/87 (14%), Positives = 19/87 (21%), Gaps = 5/87 (5%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           GK C+         +    +    C E        C C  GY       +  P G   C 
Sbjct: 73  GKNCELFTRKLCSLD--NGDCDQFCHEEQNS--VVCSCARGYTLADNGKACIPTGPYPCG 128

Query: 61  HEAQCLALSQVHNACDCPPDWKGSADC 87
            +        V             +  
Sbjct: 129 KQTLERRKRSVAQ-ATSSSGEAPDSIT 154

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGT-PCGQIFC 59
                ++   C+ +    C++ GKC++ +    Y C C  G+ G++CE      C     
Sbjct: 35  FWNKYKDGDQCETSP---CQNQGKCKDGLGE--YTCTCLEGFEGKNCELFTRKLCSLDNG 89

Query: 60  FHEAQCLALSQVHNACDCPPDWKGSAD 86
             +  C         C C   +  + +
Sbjct: 90  DCDQFCHEEQNSVV-CSCARGYTLADN 115

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 39.0 bits (91), Expect = 4e-05
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
          C +GG C++ +    + C+CP G+AG+ CE
Sbjct: 56 CFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
                 +   C+      C +GG C++ +    Y+C C  G+ G++CE   T   +    
Sbjct: 41  FWKQYVDGDQCEPNP---CLNGGLCKDDINS--YECWCQVGFEGKNCELDATCNIKN-GR 94

Query: 61  HEAQCLALSQVHNACDCPPDWKGSAD 86
            +  C   +     C C   ++ + D
Sbjct: 95  CKQFCKTGADSKVLCSCTTGYRLAPD 120

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 40.1 bits (93), Expect = 8e-05
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCG----- 55
           G++C+ +   C+  N   C   G+           C+C  G+ G  C+   T  G     
Sbjct: 509 GQYCECDTINCERYNGQVCGGPGRGL----CFCGKCRCHPGFEGSACQCERTTEGCLNPR 564

Query: 56  QIFCFHEAQCLALSQVHNACDCPPDWKGS 84
           ++ C    +C       N C+C   ++  
Sbjct: 565 RVECSGRGRC-----RCNVCECHSGYQLP 588

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A Length = 50

 Score = 37.1 bits (86), Expect = 8e-05
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
          C  ++  +C HG  C  +VQ +   C C +GY G  CEH+
Sbjct: 8  CPDSHTQFCFHG-TCRFLVQEDKPACVCHSGYVGARCEHA 46

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A Length = 46

 Score = 36.7 bits (85), Expect = 9e-05
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 8  MTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH 49
          +T C      +C HG +C  +V      C+C  GY G  CEH
Sbjct: 3  ITKCSSDMNGYCLHG-QCIYLVDMSQNYCRCEVGYTGVRCEH 43

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 19  CEHGGKCEEIVQGEMYDCKCPA-GYAGEHCEHSGTPCGQIFCFHEAQCLALSQ 70
           C +GG C  +       C C   G+ G+ C          F   E  C  LSQ
Sbjct: 198 CLNGGVCSVVDDQ--AVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQ 248

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 13/76 (17%)

Query: 19  CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCP 78
           C +GG C E        C+CP G+ G HCE +        C +   C+        C CP
Sbjct: 155 CRNGGFCNE-----RRICECPDGFHGPHCEKALCTPR---CMNGGLCVT----PGFCICP 202

Query: 79  PDWKGSADCSLPTLSQ 94
           P + G  +C     S 
Sbjct: 203 PGFYGV-NCDKANCST 217

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 13/72 (18%)

Query: 19  CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCP 78
           C +GGKC          CKC  GY G+ C       G   C     C       N C C 
Sbjct: 251 CRNGGKCIG-----KSKCKCSKGYQGDLCSKPVCEPG---CGAHGTCHE----PNKCQCQ 298

Query: 79  PDWKGSADCSLP 90
             W G   C+  
Sbjct: 299 EGWHGR-HCNKR 309

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 19/91 (20%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           G  CD+            C +GG C          C CP G  GE CE          C 
Sbjct: 207 GVNCDKANCSTT------CFNGGTCFYP-----GKCICPPGLEGEQCE---ISKCPQPCR 252

Query: 61  HEAQCLALSQVHNACDCPPDWKGSADCSLPT 91
           +  +C+      + C C   ++G   CS P 
Sbjct: 253 NGGKCIG----KSKCKCSKGYQGD-LCSKPV 278

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1 Length = 79

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH 49
          C    + +C HG +C+ + +     C C  GY GE C  
Sbjct: 40 CLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCHG 77

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 13/84 (15%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIF-C 59
           G +CD+ +              G C E      + C C   + G+ C+     CG    C
Sbjct: 93  GLYCDKCIPHP-------GCVHGICNE-----PWQCLCETNWGGQLCDKDLNYCGTHQPC 140

Query: 60  FHEAQCLALSQVHNACDCPPDWKG 83
            +   C         C CP  + G
Sbjct: 141 LNGGTCSNTGPDKYQCSCPEGYSG 164

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
          C +GG C++ +    Y+C CP G+ G++CE
Sbjct: 11 CLNGGSCKDDINS--YECWCPFGFEGKNCE 38

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster} Length = 58

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 11 CDGTNEFWCEHGGKC--EEIVQGEMYDCKCPAGYAGEHCEHSGT 52
           +  + ++C +   C   +I    +Y C+C  G+ G+ CE+   
Sbjct: 8  PETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEI 51

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A Length = 50

 Score = 35.5 bits (82), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
          C    + +C  G +C  +V  +   C C  GY G  CE  
Sbjct: 8  CPKQYKHYCIKG-RCRFVVAEQTPSCVCDEGYIGARCERV 46

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGT-PCGQIFC 59
                ++   C+ +    C++ GKC++ +    Y C C  G+ G++CE      C     
Sbjct: 35  FWNKYKDGDQCETSP---CQNQGKCKDGLGE--YTCTCLEGFEGKNCELFTRKLCSLDNG 89

Query: 60  FHEAQCLALSQVHNACDCPPDWKGSAD 86
             +  C         C C   +  + +
Sbjct: 90  DCDQFCHEEQNSVV-CSCARGYTLADN 115

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 4   CDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPA-GYAGEHCEHSGTPC 54
           C+   T C       C + G C +  Q + + C C    ++G  C   GT  
Sbjct: 181 CEGPSTTCQED---SCSNQGVCLQ--QWDGFSCDCSMTSFSGPLCNDPGTTY 227

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D Length = 52

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 11 CDGTNEFWCEHGGKC--EEIVQGEMYDCKCPAGYAGEHCEHS 50
           +  + ++C +   C   +I    +Y C+C  G+ G+ CE+ 
Sbjct: 8  PETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1 Length = 45

 Score = 35.1 bits (80), Expect = 5e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 14 TNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
          + + +C +GG    I   + Y C C  GY+G+ C+  
Sbjct: 6  SYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR 42

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 37.0 bits (85), Expect = 9e-04
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 8/89 (8%)

Query: 1   GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCF 60
           GK+C+ +   C       C   G+C         DC C + + G +C  + T        
Sbjct: 518 GKYCECDDFSCVRYKGEMCSGHGQCS------CGDCLCDSDWTGYYCNCT-TRTDTCMSS 570

Query: 61  HEAQCLALSQ-VHNACDCPPDWKGSADCS 88
           +   C    +    +C C         C 
Sbjct: 571 NGLLCSGRGKCECGSCVCIQPGSYGDTCE 599

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.71
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.68
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.64
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.51
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.5
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.47
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.45
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.44
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.41
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.4
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.39
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.38
2vh0_B	134	Activated factor XA light chain; serine protease,	99.37
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	99.36
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.34
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.33
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.28
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.24
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.2
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.18
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	99.17
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.16
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.14
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	99.11
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	99.06
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.99
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.99
2bou_A	143	EGF-like module containing mucin-like hormone rece	98.95
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.92
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.9
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.85
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.85
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.83
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.81
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.81
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.8
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.8
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.73
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.73
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.71
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.7
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.7
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.7
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	98.66
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.64
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.62
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.54
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.52
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	98.51
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.5
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	98.5
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.49
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	98.45
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.42
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.4
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.39
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.35
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	98.23
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	98.19
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.19
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.19
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	98.15
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.13
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	98.03
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	97.97
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	97.96
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	97.95
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.93
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	97.92
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	97.86
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	97.84
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	97.83
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.82
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	97.78
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	97.77
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	97.75
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	97.74
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	97.72
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	97.69
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	97.64
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	97.61
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	97.56
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	97.56
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.53
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.46
2vh0_B	134	Activated factor XA light chain; serine protease,	97.46
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	97.37
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	97.3
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	97.25
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	97.23
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	97.18
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.15
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	97.11
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	97.1
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	97.08
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	97.08
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	97.03
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.02
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	96.97
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.96
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	96.96
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	96.94
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.94
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	96.92
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	96.88
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	96.87
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	96.86
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	96.83
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	96.82
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	96.8
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	96.76
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	96.65
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	96.42
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	96.4
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.24
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	96.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.19
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	95.98
1ob1_C	99	Major merozoite surface protein; immune system, im	95.96
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.92
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	95.86
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	95.79
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.57
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	95.56
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	95.52
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	95.23
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.1
1szb_A	170	Mannose binding lectin-associated serine protease-	94.67
1szb_A	170	Mannose binding lectin-associated serine protease-	94.43
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	92.81
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	92.66
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	92.51
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	92.27
2wph_E	59	Coagulation factor IXA light chain; serine proteas	92.07
1nzi_A	159	Complement C1S component; calcium, innate immunity	91.51
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	90.9
2p26_A	280	Integrin beta-2; hybrid domain, PSI domain, I-EGF	89.78
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	88.59
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	87.52
1nzi_A	159	Complement C1S component; calcium, innate immunity	87.04
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	84.97
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	84.13
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	82.16

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.71  E-value=2.4e-17  Score=104.88  Aligned_cols=78  Identities=31%  Similarity=0.752  Sum_probs=62.4

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCC
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSAD   86 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~   86 (138)
                      ++|+|... .+||.++++|++..++  |.|.|++||.|..|+.++++|...||.++++|++.. +.|.|.|++||+|. .
T Consensus         4 dideC~~~-~~~C~~~g~C~~~~g~--~~C~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~-g~~~C~C~~G~~G~-~   78 (135)
T 2vj3_A            4 DVDECSLG-ANPCEHAGKCINTLGS--FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI-GEFQCICMPGYEGV-H   78 (135)
T ss_dssp             CCCTTTSS-SCSSSTTCEEEECSSS--EEEECCTTEESTTSCEECCTTTTCCCCSSCEEEECS-SCEEEECCTTEESS-S
T ss_pred             ccccccCC-CCCCCCCCEeECCCCC--EEEECCCCCcCCcccccCccCCCCCCCCCCEEeCCC-CCceeeCCCCCcCC-c
Confidence            77888732 2288888888888877  888888888888887777888888888888888877 58888888888888 7


Q ss_pred             CCC
Q 044268           87 CSL   89 (138)
Q Consensus        87 C~~   89 (138)
                      |+.
T Consensus        79 C~~   81 (135)
T 2vj3_A           79 CEV   81 (135)
T ss_dssp             SCE
T ss_pred             cee
Confidence            764

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.68  E-value=1.5e-16  Score=101.98  Aligned_cols=80  Identities=33%  Similarity=0.832  Sum_probs=69.1

Q ss_pred             CccCccCCCCccCCCCCEEe-------ecCCCcceEeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCC
Q 044268            7 EMTMCDGTNEFWCEHGGKCE-------EIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPP   79 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~-------~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~   79 (138)
                      ++++|...   ||.+++.|+       +..++  |.|.|++||.|..|+.++++|...||.++++|++.. +.|.|.|++
T Consensus        51 ~~~~C~~~---~C~~~g~C~~~~~~~~~~~~~--~~C~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~-g~~~C~C~~  124 (143)
T 4d90_A           51 SAGPCTPN---PCHNGGTCEISEAYRGDTFIG--YVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLV-ANYSCECPG  124 (143)
T ss_dssp             CCCTTSSC---CCCTTCEEEECCCEETTEECC--EEEECCTTEESTTSCEECCTTTTCCSCTTCEEEEET-TEEEEECCT
T ss_pred             cCCcCCCC---CCCCCCEecCCCccccCCCCC--eEeECcCCCcCCCcccCCCcCCCCCCCCCCEeECCC-CCeEeECCC
Confidence            46788888   999999999       55567  999999999999998789999999999999999987 699999999


Q ss_pred             CCCCCCCCCCCCCC
Q 044268           80 DWKGSADCSLPTLS   93 (138)
Q Consensus        80 g~~g~~~C~~~~~~   93 (138)
                      ||+|+ .|+.....
T Consensus       125 G~~G~-~c~~~~~~  137 (143)
T 4d90_A          125 EFMGR-NCQYKGGG  137 (143)
T ss_dssp             TCBST-TSCBC---
T ss_pred             CCccC-CceecCCE
Confidence            99999 88765443

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.64  E-value=5.2e-16  Score=98.66  Aligned_cols=79  Identities=27%  Similarity=0.759  Sum_probs=71.4

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCC
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSAD   86 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~   86 (138)
                      ++++|...   ||.++++|++..++  |.|.|++||.|..|+.++++|...+|.++++|++.. +.|.|.|++||+|. .
T Consensus        44 ~~~~C~~~---~C~~~~~C~~~~g~--~~C~C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~~~-g~~~C~C~~G~~G~-~  116 (135)
T 2vj3_A           44 DVNECVSN---PCQNDATCLDQIGE--FQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKI-NEFQCECPTGFTGH-L  116 (135)
T ss_dssp             ECCTTTTC---CCCSSCEEEECSSC--EEEECCTTEESSSSCEECCTTTTCCSTTTCEEEECS-SCEEEECCTTEESS-S
T ss_pred             cCccCCCC---CCCCCCEEeCCCCC--ceeeCCCCCcCCcceecCCcccCCCcCCCCEeECCC-CCeEEECCCCCcCC-c
Confidence            35778888   99999999999988  999999999999998888999999999999999987 59999999999999 9


Q ss_pred             CCCCCC
Q 044268           87 CSLPTL   92 (138)
Q Consensus        87 C~~~~~   92 (138)
                      |+..+.
T Consensus       117 C~~~i~  122 (135)
T 2vj3_A          117 CQVDLH  122 (135)
T ss_dssp             SCEECC
T ss_pred             cCccCc
Confidence            986543

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.51  E-value=2.2e-14  Score=83.60  Aligned_cols=71  Identities=27%  Similarity=0.703  Sum_probs=62.2

Q ss_pred             CCCCccCccC-CCCccCCCCCEEeecCCCcceEeeCCCCCc--CCCCccCCCCCC-CCCCCCCCeeeeCCCCCeeeeCCC
Q 044268            4 CDEEMTMCDG-TNEFWCEHGGKCEEIVQGEMYDCKCPAGYA--GEHCEHSGTPCG-QIFCFHEAQCLALSQVHNACDCPP   79 (138)
Q Consensus         4 C~~~~~~C~~-~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~--g~~C~~~~~~C~-~~~C~~~g~C~~~~~~~~~C~C~~   79 (138)
                      |+ ++|+|.. .   ||.+ +.|+++.++  |.|.|++||.  |..| .++++|. ..||.+ ++|++.. ++|.|.|++
T Consensus         2 C~-dideC~~~~---~C~~-g~C~n~~g~--y~C~C~~Gy~~~g~~C-~dideC~~~~~C~~-~~C~n~~-g~y~C~C~~   71 (82)
T 1emn_A            2 AV-DMDECKEPD---VCKH-GQCINTDGS--YRCECPFGYILAGNEC-VDTDECSVGNPCGN-GTCKNVI-GGFECTCEE   71 (82)
T ss_dssp             CC-CCCSSSSTT---SCSS-SEECCCSSC--CCEECCTTEEEETTEE-EECCGGGTCCTTSS-SCEEECS-SSEEECCSS
T ss_pred             CC-ccccCCCCC---CcCC-CEEEecCCC--EEEECCCCeECCCCcc-CCcccccCCCCCCC-CEeECCC-CCEEeECCC
Confidence            54 7899986 6   9986 899999988  9999999997  8899 4788997 689987 5999988 699999999


Q ss_pred             CCCCC
Q 044268           80 DWKGS   84 (138)
Q Consensus        80 g~~g~   84 (138)
                      ||.|.
T Consensus        72 G~~g~   76 (82)
T 1emn_A           72 GFEPG   76 (82)
T ss_dssp             SSCCC
T ss_pred             CeEeC
Confidence            99998

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.50  E-value=4e-14  Score=90.56  Aligned_cols=74  Identities=30%  Similarity=0.838  Sum_probs=60.1

Q ss_pred             cCccCCCCccCCCCCEEeecC--CCcceEeeCCCCCcCCCCcc------------CCCCCCCCCCCCCCeee-------e
Q 044268            9 TMCDGTNEFWCEHGGKCEEIV--QGEMYDCKCPAGYAGEHCEH------------SGTPCGQIFCFHEAQCL-------A   67 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~--~~~~~~C~C~~g~~g~~C~~------------~~~~C~~~~C~~~g~C~-------~   67 (138)
                      |+|.++   ||.++++|++..  ++  |.|.|++||+|..|+.            .+++|...||.++++|+       +
T Consensus         1 d~C~~~---pC~~~g~C~~~~~~g~--~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~   75 (143)
T 4d90_A            1 DICDPN---PCENGGICLPGLADGS--FSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGD   75 (143)
T ss_dssp             --CCSC---CCGGGCEEEC-----C--CEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETT
T ss_pred             CcCCCC---cCCCCCEeeCCCCCCC--EEeECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccC
Confidence            467778   999999999865  45  9999999999999975            35678888999999998       4


Q ss_pred             CCCCCeeeeCCCCCCCCCCCCC
Q 044268           68 LSQVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        68 ~~~~~~~C~C~~g~~g~~~C~~   89 (138)
                      .. +.|.|.|++||.|. .|+.
T Consensus        76 ~~-~~~~C~C~~G~~G~-~C~~   95 (143)
T 4d90_A           76 TF-IGYVCKCPRGFNGI-HCQH   95 (143)
T ss_dssp             EE-CCEEEECCTTEEST-TSCE
T ss_pred             CC-CCeEeECcCCCcCC-Cccc
Confidence            44 48999999999999 9973

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.47  E-value=2.4e-14  Score=91.70  Aligned_cols=77  Identities=22%  Similarity=0.582  Sum_probs=64.2

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCCCCCCCCC---eeeeCCCC-CeeeeCCCCCC
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEA---QCLALSQV-HNACDCPPDWK   82 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g---~C~~~~~~-~~~C~C~~g~~   82 (138)
                      ++++|.++   ||.++++|++..++  |.|.|++||+|..|+..++.|..-+|.+++   +|++.. + +|.|.|++||.
T Consensus        46 did~C~~~---pC~n~g~C~~~~g~--y~C~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~-g~~y~C~C~~Gy~  119 (142)
T 2c4f_L           46 DGDQCASS---PCQNGGSCKDQLQS--YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT-GTKRSCRCHEGYS  119 (142)
T ss_dssp             TCCGGGGC---CCCTTCEEEEETTE--EEEECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCT-TSCCEEECCTTEE
T ss_pred             ccCcCcCC---CcCCCCEEeCCCCC--EEeeCCCCccCCccccCccccccccCCCCCccCEeECCC-CCCEEEECCCCce
Confidence            78899988   99999999999988  999999999999998655565444555555   899887 6 89999999999


Q ss_pred             ----CCCCCCCC
Q 044268           83 ----GSADCSLP   90 (138)
Q Consensus        83 ----g~~~C~~~   90 (138)
                          |. .|+..
T Consensus       120 l~~dG~-~C~~~  130 (142)
T 2c4f_L          120 LLADGV-SCTPT  130 (142)
T ss_dssp             ECTTSS-CEEES
T ss_pred             ECCCCC-CCCCC
Confidence                77 77643

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.45  E-value=1.1e-13  Score=82.07  Aligned_cols=76  Identities=20%  Similarity=0.393  Sum_probs=60.8

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCc-cCCCCCCCCCCCCCCeeeeCC-CCCeeeeCC
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCE-HSGTPCGQIFCFHEAQCLALS-QVHNACDCP   78 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~-~~~~~C~~~~C~~~g~C~~~~-~~~~~C~C~   78 (138)
                      |..|+  +++|...   ||.++      .+.  |.|.|++||.  .|+ .++++|...||.++|+|++.. .+.|.|.|+
T Consensus        12 g~~c~--~~~c~~~---pC~n~------~~~--y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~   76 (91)
T 1tpg_A           12 QMIYQ--QHQSWLR---PVLRS------NRV--EYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCP   76 (91)
T ss_dssp             CCBCC--SSCEEEE---ECSSS------SCE--EEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSSCEEEECC
T ss_pred             CCeEC--CCcccCC---ccccC------CCC--cEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCCCeEeECC
Confidence            34563  6777777   77653      445  9999999998  887 577899999999999999864 138999999


Q ss_pred             CCCCCCCCCCCCCC
Q 044268           79 PDWKGSADCSLPTL   92 (138)
Q Consensus        79 ~g~~g~~~C~~~~~   92 (138)
                      +||+|. .|+..+.
T Consensus        77 ~G~~G~-~Ce~~id   89 (91)
T 1tpg_A           77 EGFAGK-SCEIDTR   89 (91)
T ss_dssp             TTCBSS-SCCBCSS
T ss_pred             CCCcCC-cCCcCCC
Confidence            999999 9986543

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.44  E-value=9.7e-14  Score=89.21  Aligned_cols=77  Identities=23%  Similarity=0.689  Sum_probs=61.0

Q ss_pred             CCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCCC--CCCCCCee-eeCCCCCeeeeCCC
Q 044268            3 FCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQI--FCFHEAQC-LALSQVHNACDCPP   79 (138)
Q Consensus         3 ~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~--~C~~~g~C-~~~~~~~~~C~C~~   79 (138)
                      .|. ++|+|.++   ||.++++|++..++  |.|.|++||+|..|+. +++|...  +|.+  +| ++.. ++|.|.|++
T Consensus        44 ~c~-dideC~~~---pC~n~g~C~~~~~~--y~C~C~~G~~G~~C~~-~deC~~~~~~C~~--~C~~n~~-g~y~C~C~~  113 (146)
T 1x7a_L           44 QYV-DGDQCEPN---PCLNGGLCKDDINS--YECWCQVGFEGKNCEL-DATCNIKNGRCKQ--FCKTGAD-SKVLCSCTT  113 (146)
T ss_dssp             -------CCSSC---SSCTTCEEEECSSC--EEEECCSSEESTTTCE-ECCTTSGGGSCSS--BCCCCSS-SCCCCBCCT
T ss_pred             cCC-CcCcCCCC---CCCCCCEeECCCCC--EEEecCCCCcCCcCCC-CccccCCCCCCcC--CCCCCCC-CCEEeEcCC
Confidence            353 78999988   99999999999988  9999999999999964 4888763  5765  89 8777 699999999


Q ss_pred             CCC----CCCCCCCC
Q 044268           80 DWK----GSADCSLP   90 (138)
Q Consensus        80 g~~----g~~~C~~~   90 (138)
                      ||+    |. .|+..
T Consensus       114 Gy~l~~dG~-~C~~~  127 (146)
T 1x7a_L          114 GYRLAPDQK-SCKPA  127 (146)
T ss_dssp             TEEECTTSS-SEEEC
T ss_pred             CcEeCCCCC-cCCCC
Confidence            999    77 77643

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.41  E-value=2.1e-14  Score=96.21  Aligned_cols=79  Identities=24%  Similarity=0.610  Sum_probs=29.2

Q ss_pred             CCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCC-CCCCC--CCCCCCCeeeeCCCCCeeeeCCC
Q 044268            3 FCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSG-TPCGQ--IFCFHEAQCLALSQVHNACDCPP   79 (138)
Q Consensus         3 ~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~-~~C~~--~~C~~~g~C~~~~~~~~~C~C~~   79 (138)
                      .|. ++++|.++   ||.++++|++..++  |.|.|++||.|..|+..+ +.|..  .+|.+  +|++.. ++|.|.|++
T Consensus        38 ~c~-dideC~~~---pC~ngg~C~n~~g~--y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~--~C~n~~-gsy~C~C~~  108 (195)
T 1nfu_B           38 KYK-DGDQCETS---PCQNQGKCKDGLGE--YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQ-NSVVCSCAR  108 (195)
T ss_dssp             -------------------------------------------------CCGGGTGGGGCSS--EEEEET-TEEEEECCT
T ss_pred             cCC-CCcccCCC---CCCCCCEeECCCCC--eeEeCCCCceeccccccccccccCCCCCCCC--EeECCC-CCeEEECCC
Confidence            353 78999988   99999999999888  999999999999998666 77876  46766  999988 699999999


Q ss_pred             CCC----CCCCCCCCC
Q 044268           80 DWK----GSADCSLPT   91 (138)
Q Consensus        80 g~~----g~~~C~~~~   91 (138)
                      ||+    |. .|+...
T Consensus       109 Gy~l~~dG~-~C~~~~  123 (195)
T 1nfu_B          109 GYTLADNGK-ACIPTG  123 (195)
T ss_dssp             TEEECTTSS-CEEESS
T ss_pred             CceeCCCCC-ccccCC
Confidence            999    88 887543

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.40  E-value=1.5e-13  Score=87.94  Aligned_cols=80  Identities=26%  Similarity=0.667  Sum_probs=65.3

Q ss_pred             CCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCC------------CCccCCCCCC--CCCCCCCCeeee
Q 044268            2 KFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGE------------HCEHSGTPCG--QIFCFHEAQCLA   67 (138)
Q Consensus         2 ~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~------------~C~~~~~~C~--~~~C~~~g~C~~   67 (138)
                      ..|+ ++++|.....+||.+++.|+++.++  |.|.|++||.|.            .|+ ++++|.  ..+|.++++|++
T Consensus        39 ~~C~-dideC~~~~~~~C~~~~~C~n~~g~--y~C~C~~Gy~g~~~~~~~~~~~~~~C~-dideC~~~~~~C~~~~~C~n  114 (143)
T 2bou_A           39 ETCD-DINECATLSKVSCGKFSDCWNTEGS--YDCVCSPGYEPVSGAKTFKNESENTCQ-DVDECSSGQHQCDSSTVCFN  114 (143)
T ss_dssp             CCCE-ECCGGGC----CCCTTEEEEECSSC--EEEEECTTEEETTCCSCBSSGGGCCEE-ECCHHHHTCCCCCTTSEEEE
T ss_pred             CcCC-ccccccCCCCCCCCCCCEEEcCCCC--eEeECCCCcccCcCccccccCCCCCcC-CccCccCcCCCCCCCCEEEC
Confidence            4675 7899986423379999999999998  999999999976            563 677886  378999999999


Q ss_pred             CCCCCeeeeCCCCCCCCCCC
Q 044268           68 LSQVHNACDCPPDWKGSADC   87 (138)
Q Consensus        68 ~~~~~~~C~C~~g~~g~~~C   87 (138)
                      .. +.|.|.|++||.|. ..
T Consensus       115 ~~-g~y~C~C~~Gy~g~-~~  132 (143)
T 2bou_A          115 TV-GSYSCRCRPGWKPR-HG  132 (143)
T ss_dssp             CS-SCEEEECCSSSCBC-TT
T ss_pred             CC-CCEEeeCCCCcccC-CC
Confidence            88 69999999999998 54

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.39  E-value=1.2e-13  Score=81.07  Aligned_cols=71  Identities=25%  Similarity=0.644  Sum_probs=59.6

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc-----CCCCccCCCCCCCCC--CCCCCeeeeCCCCCeeeeCCC
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA-----GEHCEHSGTPCGQIF--CFHEAQCLALSQVHNACDCPP   79 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~-----g~~C~~~~~~C~~~~--C~~~g~C~~~~~~~~~C~C~~   79 (138)
                      ++|+|... +++|.+ +.|+++.++  |.|.|++||.     |..|+ ++++|...|  |. +++|++.. ++|.|.|++
T Consensus         2 dideC~~~-~~~C~~-g~C~n~~g~--y~C~C~~Gy~~~~~~g~~C~-dideC~~~~~~C~-~~~C~n~~-g~y~C~C~~   74 (86)
T 1lmj_A            2 DIDECRIS-PDLCGR-GQCVNTPGD--FECKCDEGYESGFMMMKNCM-DIDECQRDPLLCR-GGVCHNTE-GSYRCECPP   74 (86)
T ss_dssp             CCCTTTTC-SSTTTT-SCEEEETTE--EEECCCSSEEECTTTSSSEE-ECCHHHHCSSTTT-TSEEEEET-TEEEEESCT
T ss_pred             ccccccCC-CCCCCC-CEEECCCCC--EEeeCCCCcCccCCCCCccC-CcccccCCCCcCC-CCEeEcCC-CCEEEECcC
Confidence            68899877 334976 499999998  9999999997     77885 788897665  65 47999998 699999999


Q ss_pred             CCCCC
Q 044268           80 DWKGS   84 (138)
Q Consensus        80 g~~g~   84 (138)
                      ||.+.
T Consensus        75 G~~~~   79 (86)
T 1lmj_A           75 GHQLS   79 (86)
T ss_dssp             TSCCC
T ss_pred             CcccC
Confidence            99987

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.38  E-value=4e-13  Score=96.17  Aligned_cols=71  Identities=30%  Similarity=0.740  Sum_probs=62.8

Q ss_pred             CCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCC---CCCCCCCeeeeCCCCCeeeeCCCCCC
Q 044268            6 EEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQ---IFCFHEAQCLALSQVHNACDCPPDWK   82 (138)
Q Consensus         6 ~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~---~~C~~~g~C~~~~~~~~~C~C~~g~~   82 (138)
                      .++|+|.++   ||.|++.|.+..++  |.|.|++||.|..|+.++++|..   .+|.+  .|.+.. +.|.|.|++||.
T Consensus         3 ~d~~~C~~~---pC~~~g~C~~~~~~--~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~-g~~~C~C~~g~~   74 (317)
T 3h5c_B            3 KGGSPCISQ---PCLHNGSCQDSIWG--YTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQ-ESYTCSCAQGYR   74 (317)
T ss_dssp             ---CCTTSC---CCTTTCCCCCCSSS--CCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCS-SSCEEECCTTEE
T ss_pred             ccCCcCCCC---CCCCCCEeECCCCC--eEEECCCCCcCCccccCcccCCCCCCCCCcC--ccccCC-CeeEEecccccc
Confidence            367899999   99999999998888  99999999999999888999986   78987  999988 699999999999


Q ss_pred             CC
Q 044268           83 GS   84 (138)
Q Consensus        83 g~   84 (138)
                      |.
T Consensus        75 ~~   76 (317)
T 3h5c_B           75 LG   76 (317)
T ss_dssp             CC
T ss_pred             cc
Confidence            85

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.37  E-value=6.2e-14  Score=88.90  Aligned_cols=77  Identities=25%  Similarity=0.630  Sum_probs=27.4

Q ss_pred             CCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCC-CCCCC--CCCCCCCeeeeCCCCCeeeeCCC
Q 044268            3 FCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSG-TPCGQ--IFCFHEAQCLALSQVHNACDCPP   79 (138)
Q Consensus         3 ~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~-~~C~~--~~C~~~g~C~~~~~~~~~C~C~~   79 (138)
                      .|. ++|+|.++   ||.++++|++..++  |.|.|++||.|..|+..+ +.|..  .+|.+  +|++.. ++|.|.|++
T Consensus        38 ~c~-d~d~C~~~---pC~n~g~C~~~~~~--y~C~C~~G~~G~~C~~~i~d~C~~~~~~C~~--~C~~~~-g~y~C~C~~  108 (134)
T 2vh0_B           38 KYK-DGDQCETS---PCQNQGKCKDGLGE--YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQ-NSVVCSCAR  108 (134)
T ss_dssp             -------------------------------------------------CCGGGTGGGGCSS--EEEEET-TEEEEECCT
T ss_pred             cCC-CcCcCCCC---CCCCcCCcccCCCC--EEeeCCCCccCCccccCCCCccccCCCCCCC--EeECCC-CCEEEECCC
Confidence            353 78899988   99999999999888  999999999999998656 77875  45765  899987 699999999


Q ss_pred             CCC----CCCCCCC
Q 044268           80 DWK----GSADCSL   89 (138)
Q Consensus        80 g~~----g~~~C~~   89 (138)
                      ||+    |. .|+.
T Consensus       109 Gy~l~~~g~-~C~~  121 (134)
T 2vh0_B          109 GYTLADNGK-ACIP  121 (134)
T ss_dssp             TEEECTTSS-CEEE
T ss_pred             CcEECCCCC-ccCc
Confidence            999    77 7764

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=99.36  E-value=3.5e-13  Score=72.19  Aligned_cols=47  Identities=28%  Similarity=0.630  Sum_probs=38.6

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEe-----ecCCCcceEeeCCCCCcCCCCccCCC
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCE-----EIVQGEMYDCKCPAGYAGEHCEHSGT   52 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~-----~~~~~~~~~C~C~~g~~g~~C~~~~~   52 (138)
                      |++|++++|+|.++   ||+|+|+|.     +....  |.|.|++||+|..|+..+.
T Consensus         1 G~~c~~~~~eC~s~---pC~NgGtC~~~~~~d~~~~--y~C~C~~g~~G~~CE~~v~   52 (55)
T 3u7u_G            1 GTSHLVKCAEKEKT---FCVNGGECFMVKDLSNPSR--YLCKCPNEFTGDRCQNYVM   52 (55)
T ss_dssp             --CCEEECCSTTTT---TSCTTCEEEEECCC--CCC--EEEEECTTEESTTSCEECC
T ss_pred             CCCCcccCCCCcCC---CCCCCCCcCCCCccCCCCC--EeEeCCCCCcCCCcCccCc
Confidence            68899999999999   999999995     44556  9999999999999986553

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.34  E-value=3.6e-13  Score=79.23  Aligned_cols=73  Identities=25%  Similarity=0.650  Sum_probs=60.6

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc----CCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCC
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA----GEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWK   82 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~   82 (138)
                      ++|+|... +.+| ++++|++..++  |.|.|++||.    |..|+ ++++|...||.  ++|++.. ++|.|.|+ |+.
T Consensus         2 dideC~~~-~~~C-~~~~C~n~~g~--y~C~C~~G~~~~~~g~~C~-dideC~~~~C~--~~C~n~~-g~y~C~C~-g~~   72 (87)
T 1z6c_A            2 DVDECSLK-PSIC-GTAVCKNIPGD--FECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNYP-GGYTCYCD-GKK   72 (87)
T ss_dssp             CSCSSSSS-SSSB-TTSSCCCBTTB--CCCSSSTTCEEETTTTEEE-CCCHHHHSCCS--SEECCCS-SSCCEECC-SSS
T ss_pred             ccccccCC-CCCC-CCCEeECCCCC--EEEECCCCceECCCCCcCC-CcCeeCCCCCC--CEEEccC-CCEEEECC-CCc
Confidence            68899888 2238 78899999988  9999999998    78895 88899888997  5999988 69999998 777


Q ss_pred             CCCCCCC
Q 044268           83 GSADCSL   89 (138)
Q Consensus        83 g~~~C~~   89 (138)
                      |. .++.
T Consensus        73 G~-~~~~   78 (87)
T 1z6c_A           73 GF-KLAQ   78 (87)
T ss_dssp             CC-BCCT
T ss_pred             CC-cccC
Confidence            76 5543

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.33  E-value=8.4e-13  Score=81.43  Aligned_cols=70  Identities=26%  Similarity=0.618  Sum_probs=56.1

Q ss_pred             CccCccCCCCcc--------CCCCCEEeecCCCcceEeeCCCCCcCCCCccCC--CCCCC--CCCCCCCeeeeCCCCCee
Q 044268            7 EMTMCDGTNEFW--------CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSG--TPCGQ--IFCFHEAQCLALSQVHNA   74 (138)
Q Consensus         7 ~~~~C~~~~~~p--------C~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~--~~C~~--~~C~~~g~C~~~~~~~~~   74 (138)
                      ++|+|..+   |        |.++++|++..++  |.|.|++||.|..|+...  ++|..  .+|.+  +|++.. ++|.
T Consensus         5 d~d~C~~~---p~~~~C~~~C~~~g~C~~~~~~--y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~-g~y~   76 (114)
T 1aut_L            5 DGDQCLVL---PLEHPCASLCCGHGTCIDGIGS--FSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEV-GWRR   76 (114)
T ss_dssp             ---CCCCC---SSCCSSSSTTTTSEEECCCSSC--CCEEECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECS-SSEE
T ss_pred             ecccccCC---CccccccccCCCcCCCCCCCCC--cEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCC-CCEE
Confidence            67889888   8        9999999999888  999999999999997543  36764  34544  899988 6999


Q ss_pred             eeCCCCCCCC
Q 044268           75 CDCPPDWKGS   84 (138)
Q Consensus        75 C~C~~g~~g~   84 (138)
                      |.|++||+|.
T Consensus        77 C~C~~G~~~~   86 (114)
T 1aut_L           77 CSCAPGYKLG   86 (114)
T ss_dssp             EECCTTEEEC
T ss_pred             eECCCCeeEC
Confidence            9999999954

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.28  E-value=1.1e-13  Score=92.24  Aligned_cols=75  Identities=24%  Similarity=0.485  Sum_probs=63.8

Q ss_pred             CCCCCCccCcc----CCCCccCCCCCEEeecC-----CCcceEeeCCCCCcCCCCccCCCCCCCCCCCCCCeee----eC
Q 044268            2 KFCDEEMTMCD----GTNEFWCEHGGKCEEIV-----QGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCL----AL   68 (138)
Q Consensus         2 ~~C~~~~~~C~----~~~~~pC~~~~~C~~~~-----~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~----~~   68 (138)
                      ..|+ ++++|.    ..   ||.+++.|++..     ++  |.|.|++||.|..+.-.+++|...||.++++|+    +.
T Consensus        39 ~~C~-~id~C~~~~~~~---~C~~~~~C~~~~~~~~~g~--y~C~C~~G~~g~~~~C~~d~C~~~~C~~~g~C~~~~~~~  112 (186)
T 1z1y_A           39 NTCE-EXNECXXETLGX---ACGEFGQCIENPDPAQVNM--YXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSE  112 (186)
T ss_dssp             TEEE-ECCCCSGGGTTS---EEETTEEEEECSSTTSSCS--EEEEECTTEEEETTEEEEGGGTTCCCCTTEEEEEEEETT
T ss_pred             CccC-CCCcccCCCCCC---CCCCCCEeecCCCCcCCCC--EECCCCCCCccCCCCCCCCcCcCCCCCCCCEEeeCCcCC
Confidence            3676 789998    66   999999999998     67  999999999987554346889989999999998    55


Q ss_pred             CCCCeeeeCCCCCCC
Q 044268           69 SQVHNACDCPPDWKG   83 (138)
Q Consensus        69 ~~~~~~C~C~~g~~g   83 (138)
                      . +.|.|.|++||.|
T Consensus       113 ~-g~~~C~C~~Gy~g  126 (186)
T 1z1y_A          113 I-QSAGCSCAIGXVP  126 (186)
T ss_dssp             E-EEEEEEECTEEEE
T ss_pred             C-CCceEECCCCCcc
Confidence            5 5899999999998

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.24  E-value=9.1e-12  Score=96.05  Aligned_cols=74  Identities=28%  Similarity=0.782  Sum_probs=64.1

Q ss_pred             CccCccCCCCccCCCCCEEeecCC-CcceEe-eCCCCCcC--CCCccCCCCCCCCC--CCCCC---eeeeCCCCCeeee-
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQ-GEMYDC-KCPAGYAG--EHCEHSGTPCGQIF--CFHEA---QCLALSQVHNACD-   76 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~-~~~~~C-~C~~g~~g--~~C~~~~~~C~~~~--C~~~g---~C~~~~~~~~~C~-   76 (138)
                      ++++|.++   ||.+++.|++... +  |.| .|++||+|  ..|+ .+++|...|  |.+++   +|++.. ++|.|. 
T Consensus         2 DIDeC~~n---PC~~gg~C~n~~~Gs--y~C~~C~~GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~-gsY~C~~   74 (634)
T 1yo8_A            2 DPDGCLSN---PCFPGAQCSSFPDGS--WSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQ-PGFHCLP   74 (634)
T ss_dssp             --CGGGGC---CSCTTCCEEECTTSC--EEECCCCTTBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECS-SSEEECC
T ss_pred             cccccCCC---CCCCCCEEecCCCCC--eECCcCCCccCCCCCCcc-ccccccCCCCcccCCccccceeecc-Cceeccc
Confidence            67899888   9999999999874 5  999 99999998  7896 789998877  99998   999988 699998 


Q ss_pred             CCCCCCCCCCCC
Q 044268           77 CPPDWKGSADCS   88 (138)
Q Consensus        77 C~~g~~g~~~C~   88 (138)
                      |++||+|. .|+
T Consensus        75 C~~Gy~G~-~c~   85 (634)
T 1yo8_A           75 CPPRYRGN-QPV   85 (634)
T ss_dssp             CCTTEEEC-CCE
T ss_pred             CCCCcccC-ccc
Confidence            99999998 654

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.20  E-value=1.1e-11  Score=95.52  Aligned_cols=83  Identities=25%  Similarity=0.714  Sum_probs=68.7

Q ss_pred             CCCCCCCccCccCCCCccCCCCC---EEeecCCCcceEee-CCCCCcCCCCc--------------cCCCCCCC--CCCC
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGG---KCEEIVQGEMYDCK-CPAGYAGEHCE--------------HSGTPCGQ--IFCF   60 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~---~C~~~~~~~~~~C~-C~~g~~g~~C~--------------~~~~~C~~--~~C~   60 (138)
                      |.+|+ ++++|... ++.|.+++   +|+++.++  |.|. |++||.|..|+              ..+++|..  .+|.
T Consensus        38 g~~Ce-DiDEC~~~-p~~C~~gg~~~~CvNt~gs--Y~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~  113 (634)
T 1yo8_A           38 GTHCE-DLDECALV-PDICFSTSKVPRCVNTQPG--FHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCH  113 (634)
T ss_dssp             SSSCC-BCCTTTTS-CCCSCCCSSSCCEEECSSS--EEECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTTCCCCC
T ss_pred             CCCcc-ccccccCC-CCcccCCccccceeeccCc--eecccCCCCcccCccccccccccccCCCcccccccccCCCcccc
Confidence            36897 89999888 22299998   99999998  9998 99999988754              46788975  5999


Q ss_pred             CCCeeeeCC---CCCeeeeCCCCCCC--CCCCC
Q 044268           61 HEAQCLALS---QVHNACDCPPDWKG--SADCS   88 (138)
Q Consensus        61 ~~g~C~~~~---~~~~~C~C~~g~~g--~~~C~   88 (138)
                      ++++|++..   .+.|.|.|++||.|  . .|+
T Consensus       114 ~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~-~Ce  145 (634)
T 1yo8_A          114 KHAECIYLGHFSDPMYKCECQTGYAGDGL-ICG  145 (634)
T ss_dssp             TTEEEEECCTTCSSSEEEEECTTEEESSS-SEE
T ss_pred             cCccccccccccccceeeeccCCccccCc-ccc
Confidence            999999876   14899999999998  5 675

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.18  E-value=1.9e-12  Score=86.22  Aligned_cols=76  Identities=20%  Similarity=0.518  Sum_probs=64.4

Q ss_pred             ccCccCCCCccCCCCCEEe----ecCCCcceEeeCCCCCcC-----CCCccC-CCCCCCCCC-CCCCeeeeCCCCCeeee
Q 044268            8 MTMCDGTNEFWCEHGGKCE----EIVQGEMYDCKCPAGYAG-----EHCEHS-GTPCGQIFC-FHEAQCLALSQVHNACD   76 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~----~~~~~~~~~C~C~~g~~g-----~~C~~~-~~~C~~~~C-~~~g~C~~~~~~~~~C~   76 (138)
                      +++|...   ||.+++.|+    +..++  |.|.|++||.|     ..|+.. +++|. .+| .++++|++.. +.|.|.
T Consensus        91 ~d~C~~~---~C~~~g~C~~~~~~~~g~--~~C~C~~Gy~g~~~~~~~C~~~~~~~C~-~~C~~~~~~C~n~~-g~y~C~  163 (186)
T 1z1y_A           91 LDVCQYX---NCGESGECIVEYLSEIQS--AGCSCAIGXVPNPEDEXXCTXTGETACQ-LXCNTDNEVCXNVE-GVYXCQ  163 (186)
T ss_dssp             EGGGTTC---CCCTTEEEEEEEETTEEE--EEEEECTEEEEETTTTTEEEEEECCCCC-CCCCTTTEEEEEET-TEEEEE
T ss_pred             CCcCcCC---CCCCCCEEeeCCcCCCCC--ceEECCCCCcccCCCCCcceEcCCCccc-ccccccCcceecCC-CCeeeE
Confidence            6889888   999999998    66666  99999999998     778643 57887 499 8899999988 699999


Q ss_pred             CCCCCCCCCCCCCCC
Q 044268           77 CPPDWKGSADCSLPT   91 (138)
Q Consensus        77 C~~g~~g~~~C~~~~   91 (138)
                      |++||+|. .++...
T Consensus       164 C~~G~~g~-~~~~~~  177 (186)
T 1z1y_A          164 CMEGFTFD-XEXNVC  177 (186)
T ss_dssp             ECTTCEEE-TTTTEE
T ss_pred             CCCCCccC-cccccC
Confidence            99999999 776543

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=99.17  E-value=1.6e-11  Score=65.70  Aligned_cols=47  Identities=19%  Similarity=0.552  Sum_probs=38.3

Q ss_pred             CCCCccCCCCCCCCCCCCCCeee-----eCCCCCeeeeCCCCCCCCCCCCCCCC
Q 044268           44 GEHCEHSGTPCGQIFCFHEAQCL-----ALSQVHNACDCPPDWKGSADCSLPTL   92 (138)
Q Consensus        44 g~~C~~~~~~C~~~~C~~~g~C~-----~~~~~~~~C~C~~g~~g~~~C~~~~~   92 (138)
                      |..|++.+++|.+.||.|+|+|.     +.. +.|.|.|++||+|. .||..+.
T Consensus         1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~-~~y~C~C~~g~~G~-~CE~~v~   52 (55)
T 3u7u_G            1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNP-SRYLCKCPNEFTGD-RCQNYVM   52 (55)
T ss_dssp             --CCEEECCSTTTTTSCTTCEEEEECCC--C-CCEEEEECTTEEST-TSCEECC
T ss_pred             CCCCcccCCCCcCCCCCCCCCcCCCCccCCC-CCEeEeCCCCCcCC-CcCccCc
Confidence            56788899999999999999995     334 48999999999999 9997554

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.16  E-value=1e-11  Score=79.70  Aligned_cols=35  Identities=17%  Similarity=0.594  Sum_probs=29.9

Q ss_pred             CCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCC
Q 044268            5 DEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGE   45 (138)
Q Consensus         5 ~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~   45 (138)
                      ++++|+|.++   ||.| ++|+++.++  |.|.|++||+|.
T Consensus         1 ~~dideC~~~---pC~n-g~C~n~~g~--y~C~C~~G~~g~   35 (147)
T 2w86_A            1 SADIDECESS---PCIN-GVCKNSPGS--FICECSSESTLD   35 (147)
T ss_dssp             CCCCCGGGGC---CSBT-SEEEEETTE--EEEECCTTEEEC
T ss_pred             CCcCccCcCC---CCCC-CEeECCCCC--EEeECCCCcccC
Confidence            3578999988   9986 699999988  999999998743

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.14  E-value=1.6e-11  Score=80.61  Aligned_cols=69  Identities=26%  Similarity=0.814  Sum_probs=56.1

Q ss_pred             ccCCCCcc-CCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCC-CCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCC
Q 044268           11 CDGTNEFW-CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQ-IFCFHEAQCLALSQVHNACDCPPDWKGSADCS   88 (138)
Q Consensus        11 C~~~~~~p-C~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~-~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~   88 (138)
                      |...   + |.++ +|+   ..  |.|.|++||+|..|+.+++.|.. .+|.++++|++...+.|.|.|++||+|. .|+
T Consensus        99 C~~~---~~C~~g-~C~---~~--~~C~C~~G~~G~~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~~G~-~Ce  168 (169)
T 2vj2_A           99 CIPH---PGCVHG-ICN---EP--WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP-NCE  168 (169)
T ss_dssp             ECCC---TTCSSE-ECS---ST--TCCEECTTEETTTTCEESCHHHHTCCCCTTCEEEECSTTCEEEECCTTCCST-TSC
T ss_pred             CCCC---CCCCCC-CcC---CC--CEEeCCCCCCCCcccCCCCCCCCCCCCCCCCEEcCCCCCCcEeECCCCCcCc-CcC
Confidence            4444   5 7764 886   34  88999999999999877888874 7999999999862258999999999999 887


Q ss_pred             C
Q 044268           89 L   89 (138)
Q Consensus        89 ~   89 (138)
                      +
T Consensus       169 ~  169 (169)
T 2vj2_A          169 I  169 (169)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=99.11  E-value=2.8e-11  Score=73.75  Aligned_cols=69  Identities=25%  Similarity=0.621  Sum_probs=28.5

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcC---CCCccCCCCCCC-CCCCCCCeeeeCCCCCeeeeCCCCCC
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAG---EHCEHSGTPCGQ-IFCFHEAQCLALSQVHNACDCPPDWK   82 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g---~~C~~~~~~C~~-~~C~~~g~C~~~~~~~~~C~C~~g~~   82 (138)
                      ++++|... ..+|.  ..|++..++  |.|.|++||.|   ..|+ ++++|.. .+|.  ++|++.. ++|.|.|++||.
T Consensus        28 d~neC~~~-~~~C~--~~C~n~~g~--y~C~C~~Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~-gsy~C~C~~Gy~   98 (107)
T 2w2n_E           28 GTNECLDN-NGGCS--YVCNDLKIG--YECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLE-GGYKCQCEEGFQ   98 (107)
T ss_dssp             SCCGGGTG-GGGCS--SEEECCSBS--CEEECCTTCEEETTTEEE-C---------------------------------
T ss_pred             cCccCcCC-CCCCC--CEeEeCCCC--eEEECCCCccccCCCccc-cccccCCCCCcC--CeeecCC-CCEEEECCCCce
Confidence            35666643 12454  489999888  99999999997   7896 8899974 7886  5999988 699999999999


Q ss_pred             CC
Q 044268           83 GS   84 (138)
Q Consensus        83 g~   84 (138)
                      +.
T Consensus        99 ~~  100 (107)
T 2w2n_E           99 LD  100 (107)
T ss_dssp             --
T ss_pred             EC
Confidence            86

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=99.06  E-value=2.6e-10  Score=56.85  Aligned_cols=37  Identities=35%  Similarity=1.066  Sum_probs=34.2

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCc
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCE   48 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~   48 (138)
                      ++++|.++   ||.|+++|++..++  |.|.|++||+|..|+
T Consensus         2 d~d~C~~~---pC~ngg~C~~~~~~--~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            2 DGDQCESN---PCLNGGSCKDDINS--YECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTC---CCCTTCEEEEETTE--EEEECCTTCCSTTSC
T ss_pred             ccccCCCC---CCCCCCEeEcCCCc--eEeECCCCCcCCccC
Confidence            67899988   99999999999888  999999999999986

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.99  E-value=1.1e-12  Score=91.17  Aligned_cols=83  Identities=16%  Similarity=0.153  Sum_probs=64.4

Q ss_pred             CCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCC----------------------------
Q 044268            2 KFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTP----------------------------   53 (138)
Q Consensus         2 ~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~----------------------------   53 (138)
                      .+++.++..+. .   +|.++++|++...+  |+|.|++||+|..|+..+++                            
T Consensus        27 ~~~~~n~~~~~-~---~c~ngG~C~~g~~~--y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc~~G~~c~~~~  100 (267)
T 4fbr_A           27 ARDKQNVVALD-I---KSDDGGKTLKGTMT--YNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNI  100 (267)
T ss_dssp             CCSSCCEEEEE-E---ECSSTTSEEEEEEE--ETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEEECCCCSSCCE
T ss_pred             cccccccccCC-C---CcCCCCeecCCCCC--eEEeCCCCcccccccccccccccccCcCCCcccCCCeeeccCcccccc
Confidence            34554444443 3   58999999998888  99999999999999766554                            


Q ss_pred             -CCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCCCC
Q 044268           54 -CGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL   92 (138)
Q Consensus        54 -C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~~~   92 (138)
                       |.+.||.++++|++.. ..|.|.|+.||+|. .|+....
T Consensus       101 eC~s~pC~ngG~C~~~~-~sy~C~C~~Gf~G~-~Ce~~~d  138 (267)
T 4fbr_A          101 VAVSIKSNDGGKTLTGT-TTYNGEGPIGFKSE-VTDGDTY  138 (267)
T ss_dssp             EEEEEECSSTTSEEEEE-EEETTSCCEEEEEE-ECCCCEE
T ss_pred             ccCCCCCCCCCEEecCC-ccEEeeCCCCcccc-CCCCCcc
Confidence             3345678888888776 48999999999999 9987653

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.99  E-value=2e-12  Score=89.97  Aligned_cols=84  Identities=15%  Similarity=0.157  Sum_probs=66.9

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCC------CCC------------------
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTP------CGQ------------------   56 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~------C~~------------------   56 (138)
                      |.+|+ ..++|.+.   ||.++++|++...+  |+|.|+.||+|..|+.+++.      |..                  
T Consensus        93 G~~c~-~~~eC~s~---pC~ngG~C~~~~~s--y~C~C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~  166 (267)
T 4fbr_A           93 GARDK-QNIVAVSI---KSNDGGKTLTGTTT--YNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQN  166 (267)
T ss_dssp             CCCSS-CCEEEEEE---ECSSTTSEEEEEEE--ETTSCCEEEEEEECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTSC
T ss_pred             cCccc-cccccCCC---CCCCCCEEecCCcc--EEeeCCCCccccCCCCCcccccccCCcCCccccCCcceecccccccc
Confidence            45676 34579888   99999999998888  99999999999999876544      222                  


Q ss_pred             -----CCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCCCC
Q 044268           57 -----IFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL   92 (138)
Q Consensus        57 -----~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~~~   92 (138)
                           .||.++++|++.. ..|+|.|++||+|. .|+....
T Consensus       167 i~c~~~~c~ngg~C~dg~-~~y~C~Cp~Gf~G~-~c~~~i~  205 (267)
T 4fbr_A          167 VINVDAKSNDGGKTLSGT-MTYNGEGPIGFRGT-LTSPDTY  205 (267)
T ss_dssp             EEEEEEECSSTTSEEEEE-EEETTSCCEEEEEE-EEETTEE
T ss_pred             cccCCCCCCCCCEeeCCC-CCeEEeCCCCcccc-ccccccc
Confidence                 3577888888776 48999999999999 8876544

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=98.95  E-value=2.7e-10  Score=72.67  Aligned_cols=63  Identities=22%  Similarity=0.730  Sum_probs=53.4

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcC---------CCCccCCCCCCCC---CCCCCCeeeeCCCCCeeeeCCCCCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAG---------EHCEHSGTPCGQI---FCFHEAQCLALSQVHNACDCPPDWKGSA   85 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g---------~~C~~~~~~C~~~---~C~~~g~C~~~~~~~~~C~C~~g~~g~~   85 (138)
                      +|.++++|++.     |.|.|++||+|         ..|+ ++++|...   +|.++++|++.. +.|.|.|++||+|. 
T Consensus         8 ~C~~~~~C~~~-----~~C~C~~G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n~~-g~y~C~C~~Gy~g~-   79 (143)
T 2bou_A            8 WCPQDSSCVNA-----TACRCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTE-GSYDCVCSPGYEPV-   79 (143)
T ss_dssp             TCCTTEEESSS-----SCEEECTTEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEECS-SCEEEEECTTEEET-
T ss_pred             cCCCCCEEcCC-----CEEeCCCCCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEcCC-CCeEeECCCCcccC-
Confidence            79999999863     88999999997         5784 77889864   899999999988 69999999999987 


Q ss_pred             CCC
Q 044268           86 DCS   88 (138)
Q Consensus        86 ~C~   88 (138)
                      .++
T Consensus        80 ~~~   82 (143)
T 2bou_A           80 SGA   82 (143)
T ss_dssp             TCC
T ss_pred             cCc
Confidence            554

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.92  E-value=1.9e-09  Score=53.60  Aligned_cols=38  Identities=26%  Similarity=0.670  Sum_probs=33.8

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCC
Q 044268           50 SGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        50 ~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~   89 (138)
                      ++++|...||.++++|++.. +.|.|.|++||+|. .|+.
T Consensus         2 d~d~C~~~pC~ngg~C~~~~-~~~~C~C~~G~~G~-~Ce~   39 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDI-NSYECWCPFGFEGK-NCEL   39 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEET-TEEEEECCTTCCST-TSCC
T ss_pred             ccccCCCCCCCCCCEeEcCC-CceEeECCCCCcCC-ccCC
Confidence            46788889999999999887 58999999999999 8873

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.90  E-value=1.7e-09  Score=79.71  Aligned_cols=67  Identities=24%  Similarity=0.624  Sum_probs=57.4

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc---CCCCccCCCCCC-CCCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA---GEHCEHSGTPCG-QIFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~---g~~C~~~~~~C~-~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      |+|...   ||..++.|.+++++  |.|.|++||.   |..|+ ++++|. ..+|.+  .|.+.. ++|.|.|.+||.+.
T Consensus         1 ~eC~~~---~~~c~~~C~~~~~~--y~C~C~~G~~~~~~~~C~-dideC~~~~~C~~--~C~n~~-g~~~C~C~~g~~~~   71 (400)
T 3p5b_L            1 NECLDN---NGGCSHVCNDLKIG--YECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLE-GGYKCQCEEGFQLD   71 (400)
T ss_dssp             CCTTTT---GGGCSSEEEECSSS--EEEECCTTEEECSSSCEE-ECCCCSTTSSCSS--CCBCCS-SSCBCCCCTTCCCC
T ss_pred             CcccCC---CCCCCCEeECCCCC--eEEECCCCCCcCCCCccc-CchhhhccCCCCC--ccCCCc-cceeeecccccccc
Confidence            467777   77667799999998  9999999998   88895 889997 478876  899988 69999999999976

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.85  E-value=6.3e-10  Score=68.84  Aligned_cols=71  Identities=30%  Similarity=0.681  Sum_probs=54.0

Q ss_pred             CCccCccCCCCccCCCCCEEeec-CCCcceEeeCCCCCcCCCCccC--CCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCC
Q 044268            6 EEMTMCDGTNEFWCEHGGKCEEI-VQGEMYDCKCPAGYAGEHCEHS--GTPCGQIFCFHEAQCLALSQVHNACDCPPDWK   82 (138)
Q Consensus         6 ~~~~~C~~~~~~pC~~~~~C~~~-~~~~~~~C~C~~g~~g~~C~~~--~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~   82 (138)
                      +++|+|.++   ||.+  +|++. .++  |.|.|++||.|..++..  ...|...+|.  +.|.+ . +.|.|.|++||.
T Consensus         2 ~dideC~~~---pC~~--~C~~~~~g~--y~C~C~~Gy~g~~~~~~~C~~~C~~~~C~--~~C~~-~-~~y~C~C~~Gy~   70 (118)
T 1dx5_I            2 EPVDPCFRA---NCEY--QCQPLDQTS--YLCVCAEGFAPIPHEPHRCQMFCNQTACP--ADCDP-N-TQASCECPEGYI   70 (118)
T ss_dssp             CCCCGGGGC---CCSS--EEEECSSSC--EEEECCTTEEEETTEEEEEEECCCSSEEE--CEECT-T-STTCEECCTTEE
T ss_pred             CccccCCCC---CCCC--CCCCCCCCC--EEeECCCCccccCCCCCccccccCCCCCC--CcccC-C-CCeEeECCCCcc
Confidence            478999888   9985  99999 888  99999999998744211  1235556665  58877 3 589999999999


Q ss_pred             ---CCCCCC
Q 044268           83 ---GSADCS   88 (138)
Q Consensus        83 ---g~~~C~   88 (138)
                         |. .|+
T Consensus        71 ~~~g~-~C~   78 (118)
T 1dx5_I           71 LDDGF-ICT   78 (118)
T ss_dssp             EETTT-EEE
T ss_pred             CCCCC-ccc
Confidence               76 663

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.85  E-value=6.7e-09  Score=55.15  Aligned_cols=44  Identities=30%  Similarity=0.842  Sum_probs=34.8

Q ss_pred             CccCccCCCCccCCCCCEEe--ecCCCcceEeeCCCCCcCCCCccCCC
Q 044268            7 EMTMCDGTNEFWCEHGGKCE--EIVQGEMYDCKCPAGYAGEHCEHSGT   52 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~--~~~~~~~~~C~C~~g~~g~~C~~~~~   52 (138)
                      ++++|.+...+||.|+++|+  +..++  |.|.|++||+|..|+..+.
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~--~~C~C~~G~~G~~Ce~~~~   47 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDS--YTCNCVIGYSGDRCQTRDL   47 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSC--EEEECCTTCCSSSSCCCSC
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCC--EEEECCCCCcCCcCCccCc
Confidence            46777653234899999999  66677  9999999999999986543

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.83  E-value=4.9e-09  Score=61.90  Aligned_cols=45  Identities=31%  Similarity=0.913  Sum_probs=39.2

Q ss_pred             CCC-CCccCccCCCCccCCCCCEEeecC--CCcceEeeCCCCCcCCCCccCCC
Q 044268            3 FCD-EEMTMCDGTNEFWCEHGGKCEEIV--QGEMYDCKCPAGYAGEHCEHSGT   52 (138)
Q Consensus         3 ~C~-~~~~~C~~~~~~pC~~~~~C~~~~--~~~~~~C~C~~g~~g~~C~~~~~   52 (138)
                      .|+ .++++|.++   ||.|+++|++..  ++  |.|.|++||.|..|+.+++
T Consensus        42 ~C~~~~~~~C~~~---pC~ngg~C~~~~~~~~--~~C~C~~G~~G~~Ce~~id   89 (91)
T 1tpg_A           42 QCHSVPVKSCSEP---RCFNGGTCQQALYFSD--FVCQCPEGFAGKSCEIDTR   89 (91)
T ss_dssp             BCCEECEEECSSC---CSCTTCEEEEESSSSC--EEEECCTTCBSSSCCBCSS
T ss_pred             ccccCcCCcccCC---CCCCCCEeecCCCCCC--eEeECCCCCcCCcCCcCCC
Confidence            466 578999998   999999999987  77  9999999999999986654

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.81  E-value=4.5e-09  Score=82.06  Aligned_cols=77  Identities=26%  Similarity=0.694  Sum_probs=62.6

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCc--cCCCCCCC---CCCCCCCeeeeCCCCCeee
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCE--HSGTPCGQ---IFCFHEAQCLALSQVHNAC   75 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~--~~~~~C~~---~~C~~~g~C~~~~~~~~~C   75 (138)
                      |.+|+.+.+.|......+|.++|.|..      +.|.|.+||+|..|+  ...+.|..   .+|.++|+|..     ..|
T Consensus       518 G~~Ce~~~~~C~~~~~~~C~~~G~C~~------g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~-----g~C  586 (690)
T 3fcs_B          518 GKYCECDDFSCVRYKGEMCSGHGQCSC------GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC-----GSC  586 (690)
T ss_dssp             STTSCBCSSCCCBSSSSBGGGSEEEET------TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEET-----TEE
T ss_pred             CCCcCcccCcCcCCCCCCCCCCCEecC------CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeC-----CEE
Confidence            678887778887521237999999965      679999999999998  55678875   67999999963     279


Q ss_pred             eC-CCCCCCCCCCCC
Q 044268           76 DC-PPDWKGSADCSL   89 (138)
Q Consensus        76 ~C-~~g~~g~~~C~~   89 (138)
                      .| .+||+|. .|+.
T Consensus       587 ~C~~~Gy~G~-~Ce~  600 (690)
T 3fcs_B          587 VCIQPGSYGD-TCEK  600 (690)
T ss_dssp             ECCSTTCBST-TSCB
T ss_pred             ECCCCCccCC-CcCc
Confidence            99 9999999 9986

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.81  E-value=2.8e-09  Score=58.69  Aligned_cols=44  Identities=30%  Similarity=0.616  Sum_probs=36.7

Q ss_pred             ccCccCCCCccCCCCCEEee-----cCCCcceEeeCCCCCcCCCCccCCCCCCC
Q 044268            8 MTMCDGTNEFWCEHGGKCEE-----IVQGEMYDCKCPAGYAGEHCEHSGTPCGQ   56 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~-----~~~~~~~~C~C~~g~~g~~C~~~~~~C~~   56 (138)
                      .++|.++   ||.|+|+|++     ..+.  |.|.|++||+|..|+.+++.|..
T Consensus         6 c~~C~~~---pC~ngG~C~~~~~~~~~~~--y~C~C~~Gf~G~~Ce~~i~~~~~   54 (63)
T 1hae_A            6 CAEKEKT---FCVNGGECFMVKDLSNPSR--YLCKCQPGFTGARCTENVPMKVQ   54 (63)
T ss_dssp             CCHHHHT---TSCTTCEEEEEESSSSSCC--EEEECCTTEESTTSCEECCSSCT
T ss_pred             cCCCCCC---cCCCCcEEecCCccCCCCC--EEEECCCCCcCCccCcCcCcccc
Confidence            3568788   9999999997     4456  99999999999999877777654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.80  E-value=5.7e-10  Score=81.77  Aligned_cols=73  Identities=22%  Similarity=0.561  Sum_probs=19.0

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc----CCCCccCCCCCC-CCCCCCCCeeeeCCCCCeeeeCCCCC
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA----GEHCEHSGTPCG-QIFCFHEAQCLALSQVHNACDCPPDW   81 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~~~~~~C~-~~~C~~~g~C~~~~~~~~~C~C~~g~   81 (138)
                      ++|+|..+   ++.....|.+..++  |.|.|++||.    |..| .++++|. ..+|.+  .|.+.. ++|.|.|++||
T Consensus         2 ~~~~C~~~---~~~c~~~C~~~~g~--~~C~C~~G~~l~~~~~~C-~d~~eC~~~~~C~~--~C~~~~-g~~~C~C~~g~   72 (386)
T 3v65_B            2 GEENCNVN---NGGCAQKCQMIRGA--VQCTCHTGYRLTEDGRTC-QDVNECAEEGYCSQ--GCTNSE-GAFQCWCEAGY   72 (386)
T ss_dssp             --------------------------------------------------------CCTT--EEC------CCEECCTTE
T ss_pred             CcCcccCC---CCCCCCCCcCCCCC--cEeECCCCceECCCCCcc-CccceeCCcCcccC--cCCCCC-CCCeEEECCCc
Confidence            67889877   64434489888888  9999999998    8899 5889996 578986  499988 69999999999


Q ss_pred             C----CCCCCCC
Q 044268           82 K----GSADCSL   89 (138)
Q Consensus        82 ~----g~~~C~~   89 (138)
                      .    |. .|+.
T Consensus        73 ~l~~d~~-~C~~   83 (386)
T 3v65_B           73 ELRPDRR-SCKA   83 (386)
T ss_dssp             EECTTSS-CEEE
T ss_pred             eEcCCCC-eECC
Confidence            8    66 6753

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.80  E-value=9.1e-10  Score=71.65  Aligned_cols=74  Identities=22%  Similarity=0.500  Sum_probs=53.2

Q ss_pred             CCccCccC-CCCccCCCCCEEeecCCCcceEeeCCCCCc----CCCCccCCCC--CCC--CCC--CCCCeeeeCCCC---
Q 044268            6 EEMTMCDG-TNEFWCEHGGKCEEIVQGEMYDCKCPAGYA----GEHCEHSGTP--CGQ--IFC--FHEAQCLALSQV---   71 (138)
Q Consensus         6 ~~~~~C~~-~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~~~~~~--C~~--~~C--~~~g~C~~~~~~---   71 (138)
                      +++|+|.. +   ||. +++|+++.++  |+|.|++||.    |..|+ ++++  |..  .+|  .+++.|++.. +   
T Consensus         1 ~dideC~~~~---~C~-~~~C~n~~gs--y~C~C~~Gy~~~~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~~~~-~~~~   72 (162)
T 1uzk_A            1 TDVNECLDPT---TCI-SGNCVNTPGS--YICDCPPDFELNPTRVGCV-DTRSGNCYLDIRPRGDNGDTACSNEI-GVGV   72 (162)
T ss_dssp             CCCCGGGSTT---SSB-TSEEEEETTE--EEEECCTTCEECTTSSBEE-CCCCEEEEEEC----------CEEEE-EEEE
T ss_pred             CccccCCCCC---CCC-CCEeECCCCC--EEEeCCCCCeECCCCCccc-CCCCCcccCCCcccCCCCCCcccCCc-CCcc
Confidence            37899984 6   997 6899999998  9999999998    88896 5555  653  233  3467888765 3   


Q ss_pred             -CeeeeCCCCCC-CCCCCC
Q 044268           72 -HNACDCPPDWK-GSADCS   88 (138)
Q Consensus        72 -~~~C~C~~g~~-g~~~C~   88 (138)
                       .|.|.|++||. |. .|+
T Consensus        73 ~~~~C~C~~G~~~~~-~C~   90 (162)
T 1uzk_A           73 SKASCCCSLGKAWGT-PCE   90 (162)
T ss_dssp             CHHHHHTTTCCEETT-TTE
T ss_pred             cCceeeCCCCCCcCC-Ccc
Confidence             68999999998 65 665

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.73  E-value=1.9e-09  Score=66.64  Aligned_cols=58  Identities=31%  Similarity=0.714  Sum_probs=49.4

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCc---CCCCccCCCCCCC-CCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYA---GEHCEHSGTPCGQ-IFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~---g~~C~~~~~~C~~-~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      +|.  +.|++ .++  |.|.|++||.   |..| .++++|.. .||  +++|++.. ++|.|.|++||+|.
T Consensus        50 ~C~--~~C~~-~~~--y~C~C~~Gy~~~~g~~C-~dideC~~~~~C--~~~C~n~~-g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           50 ACP--ADCDP-NTQ--ASCECPEGYILDDGFIC-TDIDECENGGFC--SGVCHNLP-GTFECICGPDSALA  111 (118)
T ss_dssp             EEE--CEECT-TST--TCEECCTTEEEETTTEE-EECCHHHHCSSC--SSEEEECS-SSEEEEECSSSSCE
T ss_pred             CCC--CcccC-CCC--eEeECCCCccCCCCCcc-ccccccCCCCCC--cCeEEeCC-CCEEEECCCCCccC
Confidence            565  68887 466  9999999999   8889 47888986 899  67999988 69999999999986

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.73  E-value=1.9e-08  Score=53.38  Aligned_cols=41  Identities=20%  Similarity=0.587  Sum_probs=33.9

Q ss_pred             CCCCCCC---CCCCCCeee--eCCCCCeeeeCCCCCCCCCCCCCCCCC
Q 044268           51 GTPCGQI---FCFHEAQCL--ALSQVHNACDCPPDWKGSADCSLPTLS   93 (138)
Q Consensus        51 ~~~C~~~---~C~~~g~C~--~~~~~~~~C~C~~g~~g~~~C~~~~~~   93 (138)
                      +++|.+.   ||.++|+|+  +.. +.|.|.|++||+|. .|+.....
T Consensus         3 i~~C~~~~~~pC~ngg~C~~~~~~-~~~~C~C~~G~~G~-~Ce~~~~~   48 (53)
T 1egf_A            3 YPGCPSSYDGYCLNGGVCMHIESL-DSYTCNCVIGYSGD-RCQTRDLR   48 (53)
T ss_dssp             ECCCCTTSSCSSCSSCEEEEESSS-SCEEEECCTTCCSS-SSCCCSCC
T ss_pred             cccCCCCCCCcCCCCcEEEeeCCC-CCEEEECCCCCcCC-cCCccCcc
Confidence            4677765   999999999  555 58999999999999 99876543

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.71  E-value=5.9e-09  Score=81.43  Aligned_cols=76  Identities=28%  Similarity=0.697  Sum_probs=60.7

Q ss_pred             CCCCCCCc--------cCccCC-CCccCCCCCEEeecCCCcceEeeCC----CCCcCCCCccCCCCCCC---CCCCCCCe
Q 044268            1 GKFCDEEM--------TMCDGT-NEFWCEHGGKCEEIVQGEMYDCKCP----AGYAGEHCEHSGTPCGQ---IFCFHEAQ   64 (138)
Q Consensus         1 g~~C~~~~--------~~C~~~-~~~pC~~~~~C~~~~~~~~~~C~C~----~g~~g~~C~~~~~~C~~---~~C~~~g~   64 (138)
                      |..|+.++        +.|... ...+|.++|.|..      +.|.|.    +||.|..|+.+...|..   .+|.++|.
T Consensus       468 G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~------g~C~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~  541 (690)
T 3fcs_B          468 GSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC------GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQ  541 (690)
T ss_dssp             SSSSCCSCC------CCCCSSSSSSCGGGGSEEECS------SSEEECCCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEE
T ss_pred             CCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC------CeeEeecCCCCCeeCCCcCcccCcCcCCCCCCCCCCCE
Confidence            56777555        668753 0125999999973      569999    99999999877788875   47999999


Q ss_pred             eeeCCCCCeeeeCCCCCCCCCCCC
Q 044268           65 CLALSQVHNACDCPPDWKGSADCS   88 (138)
Q Consensus        65 C~~~~~~~~~C~C~~g~~g~~~C~   88 (138)
                      |..     +.|.|.+||+|. .|+
T Consensus       542 C~~-----g~C~C~~Gy~G~-~Ce  559 (690)
T 3fcs_B          542 CSC-----GDCLCDSDWTGY-YCN  559 (690)
T ss_dssp             EET-----TEEEECTTEESS-SSC
T ss_pred             ecC-----CeeECcCCCcCC-CCc
Confidence            964     679999999999 998

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.70  E-value=3.6e-09  Score=57.67  Aligned_cols=40  Identities=28%  Similarity=0.674  Sum_probs=35.5

Q ss_pred             CCCCccCccCCCCccCCCC--CEEeecCCCcceEeeCCCCCc-CCCCcc
Q 044268            4 CDEEMTMCDGTNEFWCEHG--GKCEEIVQGEMYDCKCPAGYA-GEHCEH   49 (138)
Q Consensus         4 C~~~~~~C~~~~~~pC~~~--~~C~~~~~~~~~~C~C~~g~~-g~~C~~   49 (138)
                      |+ .+|+|.++   ||.|+  ++|++..++  |.|.|++||+ |..|+.
T Consensus         8 ~~-~~d~C~sn---PC~nga~gtC~~~~g~--y~C~C~~Gy~~G~~C~~   50 (61)
T 2k2s_B            8 SE-TPAACSSN---PCGPEAAGTCKETNSG--YICRCNQGYRISLDGTG   50 (61)
T ss_dssp             TT-SCCHHHHC---SSCSSSCCEEEECSSE--EEEECCTTEEEEECSSS
T ss_pred             cC-CCCcCcCC---CCcCCCccccccCCCc--eEeECCCCCccCCCCCC
Confidence            44 67899999   99999  899999888  9999999999 999963

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.70  E-value=2e-08  Score=51.41  Aligned_cols=32  Identities=34%  Similarity=0.993  Sum_probs=27.5

Q ss_pred             cCCCCCEEe--ecCCCcceEeeCCCCCcCCCCccCC
Q 044268           18 WCEHGGKCE--EIVQGEMYDCKCPAGYAGEHCEHSG   51 (138)
Q Consensus        18 pC~~~~~C~--~~~~~~~~~C~C~~g~~g~~C~~~~   51 (138)
                      ||.|+++|+  +..+.  |.|.|++||+|..|+.++
T Consensus        10 pC~ngg~C~~~~~~~~--~~C~C~~G~~G~~Ce~~~   43 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDS--YTCNCVIGYSGDRCQTRD   43 (45)
T ss_dssp             CCSSSCEEEECTTTSS--EEEECCTTEETTTTCEEC
T ss_pred             CCCCCCEEEeecCCCC--EEEEcCCCCcCCcCCccc
Confidence            899999998  45566  999999999999998654

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.70  E-value=1.3e-08  Score=52.32  Aligned_cols=42  Identities=36%  Similarity=0.857  Sum_probs=31.3

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      ++++|.+...+||.| |+|.......+|.|.|++||+|..|+.
T Consensus         2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~   43 (46)
T 1k36_A            2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCCc
Confidence            467888711129999 799875531139999999999999975

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=98.66  E-value=6.2e-08  Score=69.61  Aligned_cols=59  Identities=34%  Similarity=0.983  Sum_probs=33.9

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~   89 (138)
                      +|.+++.|..   .  +.|.|++||.|..|+.  ..|. .+|.++|+|..    .+.|.|++||+|. .|+.
T Consensus       186 ~C~~~G~C~~---~--~~C~C~~G~~G~~C~~--~~C~-~~C~~~G~C~~----~~~C~C~~G~~G~-~C~~  244 (324)
T 2ygq_A          186 RCMNGGLCVT---P--GFCICPPGFYGVNCDK--ANCS-TTCFNGGTCFY----PGKCICPPGLEGE-QCEI  244 (324)
T ss_dssp             CCCTTCEECS---S--CCEECCTTCBTTTTCB--CCCS-SCCCSSCCBSC----SSCBCCCTTCCTT-TTC-
T ss_pred             CCCCCCEEcC---C--CEEeCCCCccCCCccc--CcCC-CCCCCCCeeCC----CCeeeCCCCccCC-CCCc
Confidence            4666666643   2  4566666666666653  2343 45666666643    2456666777666 6654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.64  E-value=2.6e-09  Score=80.21  Aligned_cols=60  Identities=28%  Similarity=0.821  Sum_probs=23.5

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      +|.| +.|...     +.|.|.+||+|..|+.  ..|.. +|.++++|..    .+.|.|++||+|. .|+...
T Consensus       398 ~C~n-G~C~~~-----~~C~C~~G~~G~~C~~--~~C~~-~C~~~g~C~~----~~~C~C~~G~~G~-~C~~~~  457 (463)
T 2wg3_C          398 LCRN-GYCTPT-----GKCCCSPGWEGDFCRT--AKCEP-ACRHGGVCVR----PNKCLCKKGYLGP-QCEQVD  457 (463)
T ss_dssp             HCCS-EEECTT-----SCEEECTTEESTTSCE--ECC-------------------------------------
T ss_pred             CCCC-CccCCC-----CeECCCCCcCCCcCCc--CcCCC-CCCCCCEECC----CCEEECCCCcccC-CCCCCc
Confidence            5887 799752     5699999999999964  56876 9999999975    3689999999999 998653

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.62  E-value=3.2e-08  Score=50.63  Aligned_cols=37  Identities=14%  Similarity=0.442  Sum_probs=30.2

Q ss_pred             CCCCC---CCCCCCeee--eCCCCCeeeeCCCCCCCCCCCCCCC
Q 044268           53 PCGQI---FCFHEAQCL--ALSQVHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        53 ~C~~~---~C~~~g~C~--~~~~~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      +|.+.   ||.++|+|+  ... +.|.|.|++||+|. .|+..+
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~-~~~~C~C~~G~~G~-~Ce~~~   43 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESL-DSYTCNCVIGYSGD-RCQTRD   43 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTT-SSEEEECCTTEETT-TTCEEC
T ss_pred             CcccCCCCCCCCCCEEEeecCC-CCEEEEcCCCCcCC-cCCccc
Confidence            45555   999999998  444 58999999999999 998643

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.54  E-value=4.7e-08  Score=76.29  Aligned_cols=77  Identities=25%  Similarity=0.676  Sum_probs=59.4

Q ss_pred             CCCCCCCccCccCCCCccCCC--CCEEeecCCCcceEeeCCCCCcCCCCcc--CCCCCCCC---CCCCCCeeeeCCCCCe
Q 044268            1 GKFCDEEMTMCDGTNEFWCEH--GGKCEEIVQGEMYDCKCPAGYAGEHCEH--SGTPCGQI---FCFHEAQCLALSQVHN   73 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~--~~~C~~~~~~~~~~C~C~~g~~g~~C~~--~~~~C~~~---~C~~~g~C~~~~~~~~   73 (138)
                      |..|+.+.+.|......+|.+  +|.|..      ..|.|.+||+|..|+.  ....|...   +|.++|+|..     .
T Consensus       509 G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~------g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~-----g  577 (687)
T 3k6s_B          509 GQYCECDTINCERYNGQVCGGPGRGLCFC------GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC-----N  577 (687)
T ss_dssp             STTSCEESSCSCEETTEETSHHHHEEEET------TEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS-----S
T ss_pred             ccccccccccccCCCCcCcCCCCCCeEEC------CEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC-----C
Confidence            567876677786321226988  899973      3699999999999973  34677654   7999999964     4


Q ss_pred             eeeCCCCCCCCCCCCC
Q 044268           74 ACDCPPDWKGSADCSL   89 (138)
Q Consensus        74 ~C~C~~g~~g~~~C~~   89 (138)
                      .|.|.+||+|. .|+.
T Consensus       578 ~C~C~~Gy~G~-~Ce~  592 (687)
T 3k6s_B          578 VCECHSGYQLP-LCQE  592 (687)
T ss_dssp             CBCCSTTCCTT-TTCC
T ss_pred             EEECCCCCcCC-CCCC
Confidence            69999999999 9986

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.52  E-value=5.1e-09  Score=68.06  Aligned_cols=78  Identities=17%  Similarity=0.286  Sum_probs=47.7

Q ss_pred             CCCCCCCccC--ccCCCCccC--CCCCEEeecCC----CcceEeeCCCCCc---------------------------CC
Q 044268            1 GKFCDEEMTM--CDGTNEFWC--EHGGKCEEIVQ----GEMYDCKCPAGYA---------------------------GE   45 (138)
Q Consensus         1 g~~C~~~~~~--C~~~~~~pC--~~~~~C~~~~~----~~~~~C~C~~g~~---------------------------g~   45 (138)
                      |.+|+ ++++  |... +.+|  .+++.|++..+    .  |.|.|++||.                           +.
T Consensus        38 g~~C~-d~~~~~C~~~-~~~c~~~~~~~C~~~~~~~~~~--~~C~C~~G~~~~~~C~~C~~~~~~~y~C~C~~g~G~~~~  113 (162)
T 1uzk_A           38 RVGCV-DTRSGNCYLD-IRPRGDNGDTACSNEIGVGVSK--ASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPN  113 (162)
T ss_dssp             SSBEE-CCCCEEEEEE-C----------CEEEEEEEECH--HHHHTTTCCEETTTTEECCCTTSHHHHHHCTTCTTEEEC
T ss_pred             CCccc-CCCCCcccCC-CcccCCCCCCcccCCcCCcccC--ceeeCCCCCCcCCCcccCCCCCCCCceeECCCCCCcccC
Confidence            35675 5555  7654 1133  34677877654    4  6666666554                           22


Q ss_pred             ---CCccCCCCCCC--CCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           46 ---HCEHSGTPCGQ--IFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        46 ---~C~~~~~~C~~--~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                         .+..++++|..  .+|.+ ++|+++. ++|.|.|++||+|.
T Consensus       114 ~~~~~c~dideC~~~~~~C~~-g~C~n~~-gsy~C~C~~Gy~g~  155 (162)
T 1uzk_A          114 PITVILEDIDECQELPGLCQG-GKCINTF-GSFQCRCPTGYYLN  155 (162)
T ss_dssp             TTTCCEEECCHHHHCGGGGBT-SEEEECS-SCEEEECCTTCCBC
T ss_pred             CCCCccCccccccCCCCCcCC-CEeEcCC-CCEEeeCCCCccCC
Confidence               12246778864  46986 5999998 69999999999987

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=98.51  E-value=6.1e-09  Score=55.08  Aligned_cols=44  Identities=25%  Similarity=0.775  Sum_probs=34.2

Q ss_pred             eEeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeC---CCCCeeeeCCCCCCCCCCCCCC
Q 044268           34 YDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLAL---SQVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        34 ~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~---~~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      +.|.|+++|.            .+||.|+|+|+..   ..+.|.|.|++||+|. +|+..
T Consensus         3 ~~C~C~~g~~------------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~-~Ce~~   49 (52)
T 3ca7_A            3 PTYKCPETFD------------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQ-RCEYK   49 (52)
T ss_dssp             CCBCCCHHHH------------HHTSCTTCEEEEEEETTEEEEEEECCTTEEST-TSCEE
T ss_pred             eeeECCCCCc------------CCcCCCCCEEecCccCCCCCEEEECCCCCcCC-CCccc
Confidence            4688888875            4678999999862   1137899999999999 99854

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.50  E-value=8.1e-08  Score=71.33  Aligned_cols=64  Identities=34%  Similarity=0.851  Sum_probs=49.7

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCccCC----------CCCC-CCCCCCCCeeeeCCCCCeeeeCCCCCCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSG----------TPCG-QIFCFHEAQCLALSQVHNACDCPPDWKGSAD   86 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~----------~~C~-~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~   86 (138)
                      ||.+++.|.+  ..  +.|.|++||.|..|+...          +.|. ..+|.+++.|..   +.+.|.|++||+|. .
T Consensus       204 ~C~~~G~C~~--~~--g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~~---~~~~C~C~~G~~G~-~  275 (423)
T 2gy5_A          204 ACMNNGVCHE--DT--GECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLP---DPYGCSCATGWKGL-Q  275 (423)
T ss_dssp             CCCTTCEECT--TT--CCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEEET---TTTEEECCBTCBSG-G
T ss_pred             CCCCCCEEEC--CC--CcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEECC---CCCeEEeCCCcccc-c
Confidence            7999999976  34  789999999999997532          1333 356888888853   47899999999998 8


Q ss_pred             CCC
Q 044268           87 CSL   89 (138)
Q Consensus        87 C~~   89 (138)
                      |+.
T Consensus       276 C~~  278 (423)
T 2gy5_A          276 CNE  278 (423)
T ss_dssp             GCB
T ss_pred             ccC
Confidence            764

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=98.50  E-value=1.4e-07  Score=67.77  Aligned_cols=60  Identities=37%  Similarity=0.992  Sum_probs=50.4

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      +|.+++.|.+   .  +.|.|++||.|..|+.  +.|. .+|.++|+|..    .+.|.|++||+|. .|+..
T Consensus       154 ~C~~~G~C~~---~--~~C~C~~G~~G~~C~~--~~C~-~~C~~~G~C~~----~~~C~C~~G~~G~-~C~~~  213 (324)
T 2ygq_A          154 GCRNGGFCNE---R--RICECPDGFHGPHCEK--ALCT-PRCMNGGLCVT----PGFCICPPGFYGV-NCDKA  213 (324)
T ss_dssp             CCCSSCEECT---T--SCEECCTTEESSSSCE--ESSS-SCCCTTCEECS----SCCEECCTTCBTT-TTCBC
T ss_pred             CCCCCCEECC---C--CeEECCCCCcCCCCCC--CCCC-CCCCCCCEEcC----CCEEeCCCCccCC-CcccC
Confidence            7999999975   3  7899999999999975  3565 58999999974    4679999999999 89753

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.49  E-value=8.1e-08  Score=49.33  Aligned_cols=38  Identities=32%  Similarity=0.743  Sum_probs=30.6

Q ss_pred             CCCCCC---CCCCCCCeeeeCC-CCCeeeeCCCCCCCCCCCCCC
Q 044268           51 GTPCGQ---IFCFHEAQCLALS-QVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        51 ~~~C~~---~~C~~~g~C~~~~-~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      +++|.+   +||.| |+|.... .+.|.|.|++||+|. +|+..
T Consensus         3 i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~-~Ce~~   44 (46)
T 1k36_A            3 ITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGV-RCEHF   44 (46)
T ss_dssp             EECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSST-TSCCC
T ss_pred             cccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccC-CCCcc
Confidence            456776   89999 7998643 137999999999999 99864

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=98.45  E-value=8.2e-08  Score=50.83  Aligned_cols=33  Identities=39%  Similarity=0.983  Sum_probs=27.4

Q ss_pred             ccCCCCCEEe--ecCCCcceEeeCCCCCcCCCCccCC
Q 044268           17 FWCEHGGKCE--EIVQGEMYDCKCPAGYAGEHCEHSG   51 (138)
Q Consensus        17 ~pC~~~~~C~--~~~~~~~~~C~C~~g~~g~~C~~~~   51 (138)
                      +||.|+|+|+  +..+.  |.|.|++||+|..|+..+
T Consensus        12 ~pC~nGG~C~~~~~~~~--~~C~C~~GytG~~Ce~~~   46 (53)
T 1nql_B           12 GYCLHDGVCMYIEALDK--YACNCVVGYIGERCQYRD   46 (53)
T ss_dssp             CEECTTCEEEEETTTTE--EEEEECTTEESTTSCEEC
T ss_pred             CCCCCCeEEeeecCCCC--EEEecCCCCcCCCCCcCC
Confidence            3999999998  44555  999999999999998543

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.42  E-value=3.2e-08  Score=53.87  Aligned_cols=39  Identities=18%  Similarity=0.392  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCCCC--CeeeeCCCCCeeeeCCCCCC-CCCCCCCC
Q 044268           50 SGTPCGQIFCFHE--AQCLALSQVHNACDCPPDWK-GSADCSLP   90 (138)
Q Consensus        50 ~~~~C~~~~C~~~--g~C~~~~~~~~~C~C~~g~~-g~~~C~~~   90 (138)
                      .+++|.++||.++  ++|++.. ++|.|.|++||+ |. .|+..
T Consensus        10 ~~d~C~snPC~nga~gtC~~~~-g~y~C~C~~Gy~~G~-~C~~~   51 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKETN-SGYICRCNQGYRISL-DGTGN   51 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEECS-SEEEEECCTTEEEEE-CSSSC
T ss_pred             CCCcCcCCCCcCCCccccccCC-CceEeECCCCCccCC-CCCCC
Confidence            5678888999998  8999988 599999999999 99 88753

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.40  E-value=5.6e-08  Score=53.35  Aligned_cols=39  Identities=21%  Similarity=0.641  Sum_probs=32.0

Q ss_pred             CCCCCCCCCCCCeeee-----CCCCCeeeeCCCCCCCCCCCCCCCC
Q 044268           52 TPCGQIFCFHEAQCLA-----LSQVHNACDCPPDWKGSADCSLPTL   92 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~-----~~~~~~~C~C~~g~~g~~~C~~~~~   92 (138)
                      ++|...||.|+|+|+.     .. +.|.|.|++||+|. .|+..+.
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~~~-~~y~C~C~~Gf~G~-~Ce~~i~   50 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLSNP-SRYLCKCQPGFTGA-RCTENVP   50 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSS-CCEEEECCTTEEST-TSCEECC
T ss_pred             CCCCCCcCCCCcEEecCCccCCC-CCEEEECCCCCcCC-ccCcCcC
Confidence            4566789999999996     34 58999999999999 9986443

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.39  E-value=7.8e-08  Score=65.35  Aligned_cols=61  Identities=28%  Similarity=0.714  Sum_probs=50.2

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCC------CcCCCCccCCCCCCCC---CCCCC--CeeeeCCCCCeeeeCCCCCCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAG------YAGEHCEHSGTPCGQI---FCFHE--AQCLALSQVHNACDCPPDWKGSAD   86 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g------~~g~~C~~~~~~C~~~---~C~~~--g~C~~~~~~~~~C~C~~g~~g~~~   86 (138)
                      +|.++|+|+.      ..|.|.+|      |.|..|+.+...|...   +|.++  |+|..     ..|.|.+||+|. .
T Consensus       144 ~Csg~G~C~~------g~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~-----g~C~C~~G~~G~-~  211 (217)
T 2p28_B          144 ICSGLGDCVC------GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC-----GKCRCHPGFEGS-A  211 (217)
T ss_dssp             BGGGTEEEET------TEEEECCCCSTTCCEESTTSCEESSCSCEETTEETTCTTTEEEET-----TEEEECTTEEST-T
T ss_pred             CCCCCCEEeC------CceECCCCCCCcccEECCCcccCCccCCCCCCCCCCCCCCcEEeC-----CeeECCCCCccC-C
Confidence            7999999973      46999999      5899998666778754   79887  89973     279999999999 9


Q ss_pred             CCCC
Q 044268           87 CSLP   90 (138)
Q Consensus        87 C~~~   90 (138)
                      |+..
T Consensus       212 C~~~  215 (217)
T 2p28_B          212 CQHH  215 (217)
T ss_dssp             SCEE
T ss_pred             cCCC
Confidence            9854

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.35  E-value=1.4e-06  Score=64.76  Aligned_cols=65  Identities=26%  Similarity=0.723  Sum_probs=49.2

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCccCC------CCCCC-CCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSG------TPCGQ-IFCFHEAQCLALSQVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~------~~C~~-~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      +|.+++.|.  .+.  |.|.|.+||.|..|+..-      ..|.. -+|.++++|....    .|.|++||+|. .|+..
T Consensus       251 ~C~~~g~C~--~~~--~~C~C~~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~----~C~C~~G~~G~-~Ce~~  321 (423)
T 2gy5_A          251 GCKSYVFCL--PDP--YGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQ----GCLCSPGWQGL-QCERE  321 (423)
T ss_dssp             TTTTCCEEE--TTT--TEEECCBTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTT----EEECCTTCBST-TSCBC
T ss_pred             CCCCCCEEC--CCC--CeEEeCCCcccccccCccCCCCcCCcccccccCCCCCEecCCC----ceECCCCCcCC-CCccC
Confidence            688889995  445  899999999999997410      12321 1688999997643    39999999999 99875


Q ss_pred             C
Q 044268           91 T   91 (138)
Q Consensus        91 ~   91 (138)
                      .
T Consensus       322 ~  322 (423)
T 2gy5_A          322 G  322 (423)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=98.23  E-value=3.2e-07  Score=48.52  Aligned_cols=35  Identities=26%  Similarity=0.737  Sum_probs=29.2

Q ss_pred             CCCCCCCCeee--eCCCCCeeeeCCCCCCCCCCCCCCCC
Q 044268           56 QIFCFHEAQCL--ALSQVHNACDCPPDWKGSADCSLPTL   92 (138)
Q Consensus        56 ~~~C~~~g~C~--~~~~~~~~C~C~~g~~g~~~C~~~~~   92 (138)
                      .+||.|+|+|.  ... +.|.|.|++||+|. .|+....
T Consensus        11 ~~pC~nGG~C~~~~~~-~~~~C~C~~GytG~-~Ce~~~~   47 (53)
T 1nql_B           11 DGYCLHDGVCMYIEAL-DKYACNCVVGYIGE-RCQYRDL   47 (53)
T ss_dssp             CCEECTTCEEEEETTT-TEEEEEECTTEEST-TSCEECS
T ss_pred             CCCCCCCeEEeeecCC-CCEEEecCCCCcCC-CCCcCCc
Confidence            47899999998  444 58999999999999 9986543

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=98.19  E-value=1.9e-06  Score=53.41  Aligned_cols=59  Identities=25%  Similarity=0.559  Sum_probs=44.4

Q ss_pred             cCCCCCEEeecC--CCcce-EeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCC
Q 044268           18 WCEHGGKCEEIV--QGEMY-DCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        18 pC~~~~~C~~~~--~~~~~-~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~   89 (138)
                      ||+|+++|++..  ..  | .|.|+++|+|..|+++++    .+|..+     .. ..|++.+..+++|. .|+.
T Consensus         2 pC~nggtC~~~~~~~~--~~~C~Cp~g~~G~~Ce~~~~----~~C~~g-----~G-~~YrG~~~~t~sG~-~Cq~   63 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSN--IHWCNCPKKFGGQHCEIDKS----KTCYEG-----NG-HFYRGKASTDTMGR-PCLP   63 (122)
T ss_dssp             CCCSSCEEEECTTTTT--CEEEECCTTEESTTSCEESS----CCSBCS-----SC-TTCCSCCCBBTTSC-BBCC
T ss_pred             CCCCcCCcCCCcccCC--CCCccCCCCCCCccccccCc----CCCccc-----cc-ccceeeccccccCC-cccC
Confidence            799999998864  34  5 999999999999987653    234332     12 37888888888888 8864

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.19  E-value=5.1e-07  Score=70.57  Aligned_cols=60  Identities=28%  Similarity=0.700  Sum_probs=49.8

Q ss_pred             cCCCCCEEeecCCCcceEeeCC------CCCcCCCCccCCCCCCC---CCCCC--CCeeeeCCCCCeeeeCCCCCCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCP------AGYAGEHCEHSGTPCGQ---IFCFH--EAQCLALSQVHNACDCPPDWKGSAD   86 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~------~g~~g~~C~~~~~~C~~---~~C~~--~g~C~~~~~~~~~C~C~~g~~g~~~   86 (138)
                      +|.++|.|..      ..|.|.      +||.|..|+.+...|..   .+|.+  +|+|..     ..|.|.+||+|. .
T Consensus       483 ~Cs~~G~C~~------G~C~C~~~~~~~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~-----g~C~C~~G~~G~-~  550 (687)
T 3k6s_B          483 ICSGLGDCVC------GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC-----GKCRCHPGFEGS-A  550 (687)
T ss_dssp             GGGSSEEEET------TEEEECCCCSTTCCEESTTSCEESSCSCEETTEETSHHHHEEEET-----TEEEECTTCCST-T
T ss_pred             cCCCCCEEeC------CEEEcCCCCCCCCCccccccccccccccCCCCcCcCCCCCCeEEC-----CEEEcCCCCcCC-C
Confidence            5999999983      369999      99999999877778873   46888  889973     269999999999 9


Q ss_pred             CCC
Q 044268           87 CSL   89 (138)
Q Consensus        87 C~~   89 (138)
                      |+.
T Consensus       551 Cec  553 (687)
T 3k6s_B          551 CQC  553 (687)
T ss_dssp             SCS
T ss_pred             Ccc
Confidence            983

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.19  E-value=2e-06  Score=68.39  Aligned_cols=65  Identities=26%  Similarity=0.732  Sum_probs=51.7

Q ss_pred             ccCCCCccCCCCC-----EEeecCCCcceEeeCCCCCc---CCCCccCCCCCC-CCCCCCCCeeeeCCCCCeeeeCCCCC
Q 044268           11 CDGTNEFWCEHGG-----KCEEIVQGEMYDCKCPAGYA---GEHCEHSGTPCG-QIFCFHEAQCLALSQVHNACDCPPDW   81 (138)
Q Consensus        11 C~~~~~~pC~~~~-----~C~~~~~~~~~~C~C~~g~~---g~~C~~~~~~C~-~~~C~~~g~C~~~~~~~~~C~C~~g~   81 (138)
                      |..+   +|.++.     .|.++.++  |.|.|++||.   |..|+ ++++|. ..+|.  ..|++.. ++|.|.|++||
T Consensus       310 C~~~---~C~~~~~~C~~~C~~~~~~--y~C~C~~Gy~l~~g~~C~-dideC~~~~~C~--~~C~n~~-gsy~C~C~~Gy  380 (791)
T 3m0c_C          310 CGTN---ECLDNNGGCSHVCNDLKIG--YECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLE-GGYKCQCEEGF  380 (791)
T ss_dssp             BSCC---STTTGGGGCSSEEEECSBS--EEEECCTTCEEETTTEEE-CCCCCSSSSSCT--TTCCBCS-SCBCCCCCSSE
T ss_pred             cccc---cccccccCccccccCCCCC--cccCCCCCCccCCCCccc-cCcccCCCCCCC--CeeecCC-CCceeecCCCC
Confidence            5555   665433     89999988  9999999995   78895 789997 34564  4899988 69999999999


Q ss_pred             CCC
Q 044268           82 KGS   84 (138)
Q Consensus        82 ~g~   84 (138)
                      .+.
T Consensus       381 ~l~  383 (791)
T 3m0c_C          381 QLD  383 (791)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            764

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=98.15  E-value=7.1e-07  Score=46.97  Aligned_cols=30  Identities=30%  Similarity=0.988  Sum_probs=25.8

Q ss_pred             cCCCCCEEeec----CCCcceEeeCCCCCcCCCCcc
Q 044268           18 WCEHGGKCEEI----VQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus        18 pC~~~~~C~~~----~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      ||.|+++|+..    .+.  |.|.|++||+|..|+.
T Consensus        15 pC~NGGtC~~~~~~~~~~--y~C~C~~Gf~G~~Ce~   48 (52)
T 3ca7_A           15 YCLNDAHCFAVKIADLPV--YSCECAIGFMGQRCEY   48 (52)
T ss_dssp             TSCTTCEEEEEEETTEEE--EEEECCTTEESTTSCE
T ss_pred             cCCCCCEEecCccCCCCC--EEEECCCCCcCCCCcc
Confidence            89999999863    334  9999999999999974

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.13  E-value=2.6e-06  Score=66.88  Aligned_cols=56  Identities=27%  Similarity=0.751  Sum_probs=48.0

Q ss_pred             CEEeecCCCcceEeeCCCCCc---CCCCccCCCCCC-CCCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           23 GKCEEIVQGEMYDCKCPAGYA---GEHCEHSGTPCG-QIFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        23 ~~C~~~~~~~~~~C~C~~g~~---g~~C~~~~~~C~-~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      ..|.++.++  |.|.|++||.   |..|+ ++++|. ..+|.+  .|.++. ++|.|.|++||.+.
T Consensus       306 ~~C~~~~~~--~~C~C~~G~~~~~~~~C~-dideC~~~~~C~~--~C~n~~-g~y~C~C~~G~~~~  365 (699)
T 1n7d_A          306 HVCNDLKIG--YECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLE-GGYKCQCEEGFQLD  365 (699)
T ss_dssp             TTCCCCTTC--CCCCCCSSSCCCSSSCCC-CCCCCSSSSSCTT--TCCBCS-SCBCCCCCSSCBCC
T ss_pred             CCcccCCCC--cEEeCCCCeEcCCCCccc-CccccCCCCcccc--ccccCC-CCeeeeeecccccC
Confidence            378888888  9999999998   77896 889997 467864  899988 69999999999974

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=98.03  E-value=3.8e-06  Score=53.62  Aligned_cols=42  Identities=21%  Similarity=0.528  Sum_probs=32.8

Q ss_pred             CCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCC
Q 044268           46 HCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        46 ~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      .| .++++|.+.||.++++|++.. ++|.|.|++||+|. .|+..
T Consensus        44 ~c-~dideC~~~pC~n~g~C~~~~-~~y~C~C~~G~~G~-~C~~~   85 (146)
T 1x7a_L           44 QY-VDGDQCEPNPCLNGGLCKDDI-NSYECWCQVGFEGK-NCELD   85 (146)
T ss_dssp             -------CCSSCSSCTTCEEEECS-SCEEEECCSSEEST-TTCEE
T ss_pred             cC-CCcCcCCCCCCCCCCEeECCC-CCEEEecCCCCcCC-cCCCC
Confidence            35 477899999999999999988 59999999999999 88754

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=97.97  E-value=2.7e-06  Score=64.71  Aligned_cols=74  Identities=19%  Similarity=0.369  Sum_probs=24.1

Q ss_pred             cCccCCCCccCCCCCEEeec----CCCcceEeeCCCCCcCCCCcc----------CCCCCCCCCCCCCCeeeeCCC-CCe
Q 044268            9 TMCDGTNEFWCEHGGKCEEI----VQGEMYDCKCPAGYAGEHCEH----------SGTPCGQIFCFHEAQCLALSQ-VHN   73 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~----~~~~~~~C~C~~g~~g~~C~~----------~~~~C~~~~C~~~g~C~~~~~-~~~   73 (138)
                      +.|...   +|.+++.|.+.    ...  +.|.|++||.|..|+.          .++.|.+-+|.+++.+...-+ ..+
T Consensus       436 ~~C~~C---~C~~~gtc~~~~~Cd~~t--g~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~C~~~tG  510 (525)
T 4aqs_A          436 YGCKSC---ACNPLGTIPGGNPCDSET--GYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSG  510 (525)
T ss_dssp             TSSEEC---CCCTTTBCCSSCCBCTTT--CCBCBCTTCCSTTTCC-----------------------------------
T ss_pred             CCCccC---CCCCCceecCCCcccCCC--CEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCccCCCCC
Confidence            445555   66666665432    123  6799999999999963          334576677888776654311 245


Q ss_pred             eeeCCCCCCCCCCCC
Q 044268           74 ACDCPPDWKGSADCS   88 (138)
Q Consensus        74 ~C~C~~g~~g~~~C~   88 (138)
                      .|.|++||+|. .|+
T Consensus       511 ~C~C~~G~~G~-~Ce  524 (525)
T 4aqs_A          511 QCSCLPHMIGR-QCN  524 (525)
T ss_dssp             ---------------
T ss_pred             eeECCCCCcCC-CCC
Confidence            79999999999 887

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=97.96  E-value=3.8e-06  Score=64.31  Aligned_cols=38  Identities=32%  Similarity=0.809  Sum_probs=34.2

Q ss_pred             ccCccCCCCccCCCCCEEee-cCCCcceEeeCC-CCCcCCCCccC
Q 044268            8 MTMCDGTNEFWCEHGGKCEE-IVQGEMYDCKCP-AGYAGEHCEHS   50 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~-~~~~~~~~C~C~-~g~~g~~C~~~   50 (138)
                      +|+|.++   ||+|+|+|.+ ..++  |.|.|+ +||+|..|+..
T Consensus         2 ~d~C~~~---PC~ngG~C~~~~~~~--y~C~C~~~G~~G~~Ce~~   41 (553)
T 1q4g_A            2 VNPCCYY---PCQHQGICVRFGLDR--YQCDCTRTGYSGPNCTIP   41 (553)
T ss_dssp             CCGGGGC---CCCTTCEEEEETTTE--EEEECTTSSEETTTTCEE
T ss_pred             CCcCCCC---CCCCCCCcCCCCCCc--eEeeCCCCCcCCCCCCCC
Confidence            5789999   9999999999 6777  999999 99999999864

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=97.95  E-value=2e-06  Score=46.25  Aligned_cols=32  Identities=28%  Similarity=0.901  Sum_probs=25.3

Q ss_pred             cCCCCCEEeecC--CCcceEeeCCCCCcCCCCcc
Q 044268           18 WCEHGGKCEEIV--QGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus        18 pC~~~~~C~~~~--~~~~~~C~C~~g~~g~~C~~   49 (138)
                      ||.|+|+|....  ....|.|.|++||+|.+|+.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence            899999998421  21238999999999999975

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.93  E-value=2.5e-06  Score=55.07  Aligned_cols=41  Identities=29%  Similarity=0.757  Sum_probs=26.1

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCC
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCG   55 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~   55 (138)
                      ++|.+.   ||.+++.|.+..+.  |.|.|++||.|..|+.. ++|.
T Consensus       120 ~~c~~~---~C~~~g~C~~~~~~--~~c~C~~g~~G~~Ce~~-~~c~  160 (162)
T 1g1s_A          120 ASCQDM---SCSKQGECLETIGN--YTCSCYPGFYGPECEYV-RDDD  160 (162)
T ss_dssp             CCCCTT---GGGGSEEEEECSSS--EEEEECTTEESTTSCEE-CC--
T ss_pred             CCCcCC---CCCCCCEEecCCCC--ceEeCCCCCcCcccccC-cccC
Confidence            445555   77777777777666  77777777777777643 3453

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=97.92  E-value=7.4e-06  Score=53.45  Aligned_cols=44  Identities=39%  Similarity=1.108  Sum_probs=37.0

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEeec-CCCcceEeeCCCCCcCCCCc
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCEEI-VQGEMYDCKCPAGYAGEHCE   48 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~~~-~~~~~~~C~C~~g~~g~~C~   48 (138)
                      |..|+.++++|...  .||.++++|++. .++  |.|.|++||.|..|+
T Consensus       124 G~~C~~~~~~C~~~--~~C~~~g~C~~~~~~~--~~C~C~~G~~G~~Ce  168 (169)
T 2vj2_A          124 GQLCDKDLNYCGTH--QPCLNGGTCSNTGPDK--YQCSCPEGYSGPNCE  168 (169)
T ss_dssp             TTTTCEESCHHHHT--CCCCTTCEEEECSTTC--EEEECCTTCCSTTSC
T ss_pred             CCcccCCCCCCCCC--CCCCCCCEEcCCCCCC--cEeECCCCCcCcCcC
Confidence            56787778889751  189999999986 677  999999999999986

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=97.86  E-value=7.1e-06  Score=47.16  Aligned_cols=38  Identities=29%  Similarity=0.964  Sum_probs=31.9

Q ss_pred             CCCCCCCccCcc-CCCCccCCCCCEEeecCCCcceEeeCCCCCcCC
Q 044268            1 GKFCDEEMTMCD-GTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGE   45 (138)
Q Consensus         1 g~~C~~~~~~C~-~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~   45 (138)
                      |..|+ ++++|. .+   ||.+ ++|+++.++  |.|.|++||.|.
T Consensus        38 g~~C~-dideC~~~~---~C~~-~~C~n~~g~--y~C~C~~G~~g~   76 (82)
T 1emn_A           38 GNECV-DTDECSVGN---PCGN-GTCKNVIGG--FECTCEEGFEPG   76 (82)
T ss_dssp             TTEEE-ECCGGGTCC---TTSS-SCEEECSSS--EEECCSSSSCCC
T ss_pred             CCccC-CcccccCCC---CCCC-CEeECCCCC--EEeECCCCeEeC
Confidence            45674 789997 56   8986 599999998  999999999875

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=97.84  E-value=9.7e-06  Score=62.38  Aligned_cols=37  Identities=30%  Similarity=0.833  Sum_probs=32.6

Q ss_pred             ccCccCCCCccCCCCCEEee-cCCCcceEeeCC-CCCcCCCCcc
Q 044268            8 MTMCDGTNEFWCEHGGKCEE-IVQGEMYDCKCP-AGYAGEHCEH   49 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~-~~~~~~~~C~C~-~g~~g~~C~~   49 (138)
                      +|+|.++   ||+|+|+|.+ ..++  |.|.|+ +||+|.+|+.
T Consensus         1 vd~C~s~---PC~ngG~C~~~~~~~--y~C~C~~~G~~G~~Ce~   39 (587)
T 3nt1_A            1 ANPCCSN---PCQNRGECMSTGFDQ--YKCDCTRTGFYGENCTT   39 (587)
T ss_dssp             CCTTTTC---CCCTTCEEEEEETTE--EEEECTTSSEETTTTCE
T ss_pred             CCCCCCC---CCCCCCEeeCCCCCC--eEEecCCCCccCCCCCC
Confidence            4789999   9999999996 4466  999999 9999999985

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=97.83  E-value=1.5e-05  Score=50.54  Aligned_cols=53  Identities=30%  Similarity=0.664  Sum_probs=37.4

Q ss_pred             CCCCCCCccCccCCCCccCCCCC---EEeecCC-CcceEeeCCCCCc----CCCCccCCC-CCCCCC
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGG---KCEEIVQ-GEMYDCKCPAGYA----GEHCEHSGT-PCGQIF   58 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~---~C~~~~~-~~~~~C~C~~g~~----g~~C~~~~~-~C~~~~   58 (138)
                      |.+|+.+++.|...   +|.+++   +|++..+ +  |.|.|++||.    |..|+.... +|...|
T Consensus        78 G~~C~~~~~~c~~c---~~~~~~C~~~C~~~~g~~--y~C~C~~Gy~l~~dG~~C~~~~e~pCg~~p  139 (142)
T 2c4f_L           78 GRNCETHKDDQLIC---VNENGGCEQYCSDHTGTK--RSCRCHEGYSLLADGVSCTPTVEYPCGKIP  139 (142)
T ss_dssp             STTSCEEGGGCCST---TTGGGGCSSEEECCTTSC--CEEECCTTEEECTTSSCEEESSSSCTTCCT
T ss_pred             CCccccCccccccc---cCCCCCccCEeECCCCCC--EEEECCCCceECCCCCCCCCCCccCCCCCC
Confidence            56787556666544   555555   9999988 8  9999999999    888864322 454444

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.82  E-value=7.4e-06  Score=50.00  Aligned_cols=40  Identities=25%  Similarity=0.647  Sum_probs=31.6

Q ss_pred             CCCCCCCCC--------CCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCCC
Q 044268           50 SGTPCGQIF--------CFHEAQCLALSQVHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        50 ~~~~C~~~~--------C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      ++++|...|        |.++++|++.. ++|.|.|++||+|. .|+...
T Consensus         5 d~d~C~~~p~~~~C~~~C~~~g~C~~~~-~~y~C~C~~G~~G~-~C~~~~   52 (114)
T 1aut_L            5 DGDQCLVLPLEHPCASLCCGHGTCIDGI-GSFSCDCRSGWEGR-FCQREV   52 (114)
T ss_dssp             ---CCCCCSSCCSSSSTTTTSEEECCCS-SCCCEEECTTEEST-TSCEEC
T ss_pred             ecccccCCCccccccccCCCcCCCCCCC-CCcEeeCCCCCcCC-CcCcCC
Confidence            456677667        89999999887 59999999999999 898543

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=97.78  E-value=9.4e-06  Score=62.45  Aligned_cols=39  Identities=26%  Similarity=0.774  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCCCCeeeeCCCCCeeeeCC-CCCCCCCCCCCC
Q 044268           51 GTPCGQIFCFHEAQCLALSQVHNACDCP-PDWKGSADCSLP   90 (138)
Q Consensus        51 ~~~C~~~~C~~~g~C~~~~~~~~~C~C~-~g~~g~~~C~~~   90 (138)
                      +++|.++||.|+|+|.....++|.|.|+ +||+|. .|+..
T Consensus         1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~-~Ce~~   40 (587)
T 3nt1_A            1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGE-NCTTP   40 (587)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTEEEEECTTSSEETT-TTCEE
T ss_pred             CCCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCC-CCCCc
Confidence            3678999999999999643248999999 999999 99974

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=97.77  E-value=7.2e-06  Score=44.05  Aligned_cols=33  Identities=24%  Similarity=0.826  Sum_probs=26.7

Q ss_pred             CCCCCCeeeeC---CCCCeeeeCCCCCCCCCCCCCCC
Q 044268           58 FCFHEAQCLAL---SQVHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        58 ~C~~~g~C~~~---~~~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      ||.|+|+|...   ....+.|.|++||+|. +|+...
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~-~Ce~~~   50 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQ-RCEYKE   50 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESS-SSCEEC
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccC-CCcccC
Confidence            89999999832   2137899999999999 998644

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=97.75  E-value=9.4e-06  Score=62.15  Aligned_cols=39  Identities=28%  Similarity=0.772  Sum_probs=34.3

Q ss_pred             CCCCCCCCCCCCCeeee-CCCCCeeeeCC-CCCCCCCCCCCCC
Q 044268           51 GTPCGQIFCFHEAQCLA-LSQVHNACDCP-PDWKGSADCSLPT   91 (138)
Q Consensus        51 ~~~C~~~~C~~~g~C~~-~~~~~~~C~C~-~g~~g~~~C~~~~   91 (138)
                      +++|.++||.|+|+|.. .. ++|.|.|+ +||+|. .|+...
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~-~~y~C~C~~~G~~G~-~Ce~~~   42 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGL-DRYQCDCTRTGYSGP-NCTIPE   42 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETT-TEEEEECTTSSEETT-TTCEEC
T ss_pred             CCcCCCCCCCCCCCcCCCCC-CceEeeCCCCCcCCC-CCCCCc
Confidence            46788899999999998 66 59999999 999999 998744

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=97.74  E-value=9.9e-06  Score=47.04  Aligned_cols=45  Identities=27%  Similarity=0.722  Sum_probs=35.2

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCC
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPC   54 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C   54 (138)
                      |..|+ ++++|...   ||.  ++|+++.++  |.|.|+ ++.|..++.+...|
T Consensus        39 g~~C~-dideC~~~---~C~--~~C~n~~g~--y~C~C~-g~~G~~~~~~~~~C   83 (87)
T 1z6c_A           39 SKSCE-DIDECSEN---MCA--QLCVNYPGG--YTCYCD-GKKGFKLAQDQKSC   83 (87)
T ss_dssp             TTEEE-CCCHHHHS---CCS--SEECCCSSS--CCEECC-SSSCCBCCTTSSSC
T ss_pred             CCcCC-CcCeeCCC---CCC--CEEEccCCC--EEEECC-CCcCCcccCCCCcc
Confidence            35675 88999888   997  699999998  999998 77777776544444

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=97.72  E-value=1.1e-05  Score=46.74  Aligned_cols=40  Identities=30%  Similarity=0.777  Sum_probs=31.7

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCC
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGE   45 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~   45 (138)
                      |..|+ ++|+|... +.+|. +++|+++.++  |.|.|++||.+.
T Consensus        40 g~~C~-dideC~~~-~~~C~-~~~C~n~~g~--y~C~C~~G~~~~   79 (86)
T 1lmj_A           40 MKNCM-DIDECQRD-PLLCR-GGVCHNTEGS--YRCECPPGHQLS   79 (86)
T ss_dssp             SSSEE-ECCHHHHC-SSTTT-TSEEEEETTE--EEEESCTTSCCC
T ss_pred             CCccC-CcccccCC-CCcCC-CCEeEcCCCC--EEEECcCCcccC
Confidence            35675 78999877 12365 5799999998  999999999864

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=97.69  E-value=3.1e-05  Score=55.13  Aligned_cols=38  Identities=34%  Similarity=0.900  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCC
Q 044268           50 SGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        50 ~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~   89 (138)
                      ++++|...||.++++|.+.. ++|.|.|++||.|. .|+.
T Consensus         4 d~~~C~~~pC~~~g~C~~~~-~~~~C~C~~g~~g~-~C~~   41 (317)
T 3h5c_B            4 GGSPCISQPCLHNGSCQDSI-WGYTCTCSPGYEGS-NCEL   41 (317)
T ss_dssp             --CCTTSCCCTTTCCCCCCS-SSCCCCCSSSCCSS-SSCC
T ss_pred             cCCcCCCCCCCCCCEeECCC-CCeEEECCCCCcCC-cccc
Confidence            46789999999999999887 58999999999999 9984

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=97.64  E-value=1.9e-05  Score=53.57  Aligned_cols=60  Identities=30%  Similarity=0.718  Sum_probs=47.0

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCC---------CCC----CCCCCCCCeeeeCCCCCeeeeCCCC----
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGT---------PCG----QIFCFHEAQCLALSQVHNACDCPPD----   80 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~---------~C~----~~~C~~~g~C~~~~~~~~~C~C~~g----   80 (138)
                      .|.++|.|..      ..|.|.+||.|..|+....         .|.    ..+|.++|+|..     ..|.|.+|    
T Consensus        97 ~Csg~G~C~~------g~C~C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~-----g~C~C~~gw~~~  165 (217)
T 2p28_B           97 LCHGKGFLEC------GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC-----GQCLCHTSDVPG  165 (217)
T ss_dssp             TTTTSEEEET------TEEEECTTEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEET-----TEEEECCCCSTT
T ss_pred             ccCCCceEEC------CEEECCCCccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEeC-----CceECCCCCCCc
Confidence            5998999973      4699999999999975432         254    357888899973     26999999    


Q ss_pred             --CCCCCCCCC
Q 044268           81 --WKGSADCSL   89 (138)
Q Consensus        81 --~~g~~~C~~   89 (138)
                        |+|. .|+.
T Consensus       166 ~~~~G~-~Ce~  175 (217)
T 2p28_B          166 KLIYGQ-YCEC  175 (217)
T ss_dssp             CCEEST-TSCE
T ss_pred             ccEECC-Cccc
Confidence              5999 9984

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=97.61  E-value=4.5e-05  Score=50.88  Aligned_cols=53  Identities=28%  Similarity=0.627  Sum_probs=34.4

Q ss_pred             CCCCCCCc-cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc----CCCCccCCCCCCCCCCCCC
Q 044268            1 GKFCDEEM-TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA----GEHCEHSGTPCGQIFCFHE   62 (138)
Q Consensus         1 g~~C~~~~-~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~~~~~~C~~~~C~~~   62 (138)
                      |.+|+.++ ++|... +.+|.+  .|++..++  |.|.|++||.    |..|+...    ..||.+.
T Consensus        73 G~~Ce~~i~deC~~~-~~~C~~--~C~n~~gs--y~C~C~~Gy~l~~dG~~C~~~~----~~PC~~~  130 (195)
T 1nfu_B           73 GKNCELFTRKLCSLD-NGDCDQ--FCHEEQNS--VVCSCARGYTLADNGKACIPTG----PYPCGKQ  130 (195)
T ss_dssp             --------CCGGGTG-GGGCSS--EEEEETTE--EEEECCTTEEECTTSSCEEESS----SSCTTCC
T ss_pred             eccccccccccccCC-CCCCCC--EeECCCCC--eEEECCCCceeCCCCCccccCC----CCCCCCC
Confidence            56787656 789874 336876  99999988  9999999999    88996432    3566554

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=97.56  E-value=0.00014  Score=46.30  Aligned_cols=58  Identities=26%  Similarity=0.585  Sum_probs=37.9

Q ss_pred             cCCCCCEEeecC--CCcce-EeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCC
Q 044268           18 WCEHGGKCEEIV--QGEMY-DCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCS   88 (138)
Q Consensus        18 pC~~~~~C~~~~--~~~~~-~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~   88 (138)
                      ||+|+|+|+...  ..  + .|.|++||.|..|+++...    .|.+      .....|+.......+|. .|+
T Consensus        14 pC~NGGtC~~~~~~s~--~~~C~Cp~g~~G~~Cei~~~~----~C~~------g~G~~YrG~~s~T~sG~-~Cq   74 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSN--IHWCNCPKKFGGQHCEIDKSK----TCYE------GNGHFYRGKASTDTMGR-PCL   74 (145)
T ss_dssp             CCCTTCEEEECSSSTT--CEEEECCTTEESTTSCEESSC----CEEC------TTCTTCCSCCCBBTTSC-BCC
T ss_pred             CCCCCCCcCCCccccC--CccccCCCCCCCCceeccccc----cCCC------CCccccccceecCCcCC-ccc
Confidence            799999998752  33  5 8999999999999875431    2322      11124555555555666 564

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=97.56  E-value=2.1e-05  Score=50.05  Aligned_cols=41  Identities=24%  Similarity=0.739  Sum_probs=32.9

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCC
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEH   46 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~   46 (138)
                      |..|+ ++|+|... +++|.+ ++|+++.++  |.|.|++||.|..
T Consensus       101 g~~C~-dideC~~~-~~~C~~-g~C~n~~g~--y~C~C~~Gy~g~~  141 (147)
T 2w86_A          101 GTQCE-DIDECEVF-PGVCKN-GLCVNTRGS--FKCQCPSGMTLDA  141 (147)
T ss_dssp             TTEEE-ECCHHHHS-TTCSSS-SEEEEETTE--EEEECCTTCCBCT
T ss_pred             CCccC-ccccccCC-CCCCCC-CEEECCCCC--EEeeCCCCCccCC
Confidence            45676 88999865 235986 599999998  9999999998653

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.53  E-value=8.2e-05  Score=38.83  Aligned_cols=35  Identities=31%  Similarity=0.791  Sum_probs=27.0

Q ss_pred             CCccCccCCC-------CccCCCCCEEeecCCCcceEeeCCCCCcC
Q 044268            6 EEMTMCDGTN-------EFWCEHGGKCEEIVQGEMYDCKCPAGYAG   44 (138)
Q Consensus         6 ~~~~~C~~~~-------~~pC~~~~~C~~~~~~~~~~C~C~~g~~g   44 (138)
                      +++|+|....       ..+|.+  .|+++.++  |.|.|++||.+
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~~--~C~n~~Gs--y~C~C~~Gy~~   43 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQH--LCHNYVGG--YFCSCRPGYEL   43 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSS--EEEEETTE--EEEECSTTCEE
T ss_pred             CccccccCcccccccccCCCCCC--EeECCCCC--eEEECCCCCeE
Confidence            4678887520       137864  99999999  99999999974

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.46  E-value=4.4e-05  Score=49.11  Aligned_cols=38  Identities=24%  Similarity=0.735  Sum_probs=33.7

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCCC
Q 044268           52 TPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      .+|...||.++++|.+.. +.|.|.|++||.|. .||...
T Consensus       120 ~~c~~~~C~~~g~C~~~~-~~~~c~C~~g~~G~-~Ce~~~  157 (162)
T 1g1s_A          120 ASCQDMSCSKQGECLETI-GNYTCSCYPGFYGP-ECEYVR  157 (162)
T ss_dssp             CCCCTTGGGGSEEEEECS-SSEEEEECTTEEST-TSCEEC
T ss_pred             CCCcCCCCCCCCEEecCC-CCceEeCCCCCcCc-ccccCc
Confidence            568888999999999988 59999999999999 998754

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=97.46  E-value=0.0001  Score=46.23  Aligned_cols=44  Identities=30%  Similarity=0.664  Sum_probs=29.4

Q ss_pred             CCCCCCCc-cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc----CCCCcc
Q 044268            1 GKFCDEEM-TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA----GEHCEH   49 (138)
Q Consensus         1 g~~C~~~~-~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~~   49 (138)
                      |.+|+..+ ++|... +.+|.+  .|++..++  |.|.|++||.    |..|+.
T Consensus        73 G~~C~~~i~d~C~~~-~~~C~~--~C~~~~g~--y~C~C~~Gy~l~~~g~~C~~  121 (134)
T 2vh0_B           73 GKNCELFTRKLCSLD-NGDCDQ--FCHEEQNS--VVCSCARGYTLADNGKACIP  121 (134)
T ss_dssp             --------CCGGGTG-GGGCSS--EEEEETTE--EEEECCTTEEECTTSSCEEE
T ss_pred             CCccccCCCCccccC-CCCCCC--EeECCCCC--EEEECCCCcEECCCCCccCc
Confidence            46787556 789764 236776  99999988  9999999999    888863

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.37  E-value=0.00014  Score=40.56  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=28.0

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEee-CCCCCcC
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCK-CPAGYAG   44 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~-C~~g~~g   44 (138)
                      ++|+|... +++|.+++.|+++.++  |+|. +..||.+
T Consensus         2 DidEC~~~-~~~C~~~~~C~Nt~Gs--y~C~~~~~g~~~   37 (71)
T 2kl7_A            2 DVNECLTI-PEACKGEMKCINHYGG--YLCLPRSAAVIN   37 (71)
T ss_dssp             CSCCTTCC-CCSCTTEEEEEETTCC--EEEEETTSCCCS
T ss_pred             ccccccCC-CCCCCCCCEeECCCCC--eEecccCCcccc
Confidence            68899764 3479988999999999  9997 5567764

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=97.30  E-value=0.00023  Score=52.36  Aligned_cols=43  Identities=26%  Similarity=0.771  Sum_probs=36.3

Q ss_pred             CCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCC-CCcCCCCccC
Q 044268            3 FCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPA-GYAGEHCEHS   50 (138)
Q Consensus         3 ~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~-g~~g~~C~~~   50 (138)
                      .|+...+.|..+   ||.|++.|.+....  |.|.|+. +|.|..|+..
T Consensus       180 gC~~~~~~C~~~---pC~n~g~C~~~~~~--~~C~C~~~~~~G~~C~~~  223 (410)
T 3asi_A          180 GCEGPSTTCQED---SCSNQGVCLQQWDG--FSCDCSMTSFSGPLCNDP  223 (410)
T ss_dssp             SCCCCSSCCCTT---SSSTTCEEEECSSS--EEEECTTTSEESTTSCEE
T ss_pred             CCCCCCCCcccc---cCCCCCEecCCCCC--ceEeccCCcccCCCCCCC
Confidence            365445789888   99999999998888  9999996 9999999753

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=97.25  E-value=6.8e-05  Score=47.89  Aligned_cols=37  Identities=38%  Similarity=0.988  Sum_probs=28.1

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccC
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS   50 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~   50 (138)
                      ++|.+.   ||.+++.|.+....  |.|.|.+||.|..|+..
T Consensus       120 ~~~~~~---pc~~~g~C~~~~~~--~~c~C~~g~~g~~Ce~~  156 (157)
T 1g1t_A          120 AACTNT---SCSGHGECVETINN--YTCKCDPGFSGLKCEQI  156 (157)
T ss_dssp             CCCCTT---GGGGSEEEEEETTE--EEEEECTTEESTTSCEE
T ss_pred             CCCCCC---CCCCCCEeecCCCC--eeEECCCCccCcccccc
Confidence            345555   78878888887777  88888888888888753

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=97.23  E-value=0.00039  Score=35.97  Aligned_cols=30  Identities=43%  Similarity=1.065  Sum_probs=17.3

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCc
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCE   48 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~   48 (138)
                      .|.|| +|.-......+.|.|++||+|..|+
T Consensus        15 yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 3e50_C           15 FCFHG-TCRFLVQEDKPACVCHSGYVGARCE   44 (50)
T ss_pred             cccCC-EEeeccCCCCeEEECCCCCcccCCC
Confidence            56665 7754321112667777777777765

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=97.18  E-value=0.00027  Score=45.68  Aligned_cols=68  Identities=29%  Similarity=0.675  Sum_probs=44.7

Q ss_pred             cCCCCCEEeecCCCcceEe-eCCCCCcCCCCccCC-----CC---------CCCCCCCCC------CeeeeCCCCCeeee
Q 044268           18 WCEHGGKCEEIVQGEMYDC-KCPAGYAGEHCEHSG-----TP---------CGQIFCFHE------AQCLALSQVHNACD   76 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C-~C~~g~~g~~C~~~~-----~~---------C~~~~C~~~------g~C~~~~~~~~~C~   76 (138)
                      ||.+++.|........+.| .|+++|+|..|+.=.     ++         |.+=.|.++      +.|...   ...|.
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~~~---tG~C~   78 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRL---TGECL   78 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBCTT---TCCBC
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcccCC---CCccc
Confidence            6889999987653212899 799999999997410     01         111124443      356432   45794


Q ss_pred             -CCCCCCCCCCCCC
Q 044268           77 -CPPDWKGSADCSL   89 (138)
Q Consensus        77 -C~~g~~g~~~C~~   89 (138)
                       |.++|+|. .|+.
T Consensus        79 ~C~~g~~G~-~Ce~   91 (162)
T 1klo_A           79 KCIYNTAGF-YCDR   91 (162)
T ss_dssp             CBCTTEETT-TTCE
T ss_pred             CCCCCCcCC-CcCc
Confidence             99999999 8874

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.15  E-value=0.00031  Score=37.03  Aligned_cols=40  Identities=28%  Similarity=0.670  Sum_probs=28.1

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc----CCCCccCCCCC
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA----GEHCEHSGTPC   54 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~~~~~~C   54 (138)
                      |+|... ..+|.+  .|++++++  |.|.|++||.    +..|. ++++|
T Consensus         2 dEC~~~-~~~C~~--~C~nt~Gs--y~C~C~~Gy~L~~d~~~C~-didec   45 (55)
T 2jkh_L            2 KLCSLD-NGDCDQ--FCHEEQNS--VVCSCARGYTLADNGKACI-PTGPY   45 (55)
T ss_dssp             CCTTTG-GGGCSS--EEEEETTE--EEEECCTTEEECTTSSCEE-ESSSS
T ss_pred             ccccCC-CCCcCc--EeEcCCCC--eEEeCCCCCEECCCCCeec-cCccc
Confidence            455432 226864  89999998  9999999996    45663 45544

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.11  E-value=0.00022  Score=52.84  Aligned_cols=61  Identities=21%  Similarity=0.541  Sum_probs=20.5

Q ss_pred             CEEeecCCCcceEeeCCCCCcCCCCccC---------------------CCCCC--------------CCCCCCCCeeee
Q 044268           23 GKCEEIVQGEMYDCKCPAGYAGEHCEHS---------------------GTPCG--------------QIFCFHEAQCLA   67 (138)
Q Consensus        23 ~~C~~~~~~~~~~C~C~~g~~g~~C~~~---------------------~~~C~--------------~~~C~~~g~C~~   67 (138)
                      ..|....+.  +.|.|..++.|..|+.-                     ...|.              ..||.|+++|..
T Consensus       304 s~C~~~~g~--~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~t~~C~ngg~C~~  381 (426)
T 3zyj_B          304 TVCVYDNSK--LTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHN  381 (426)
T ss_dssp             SCEEEETTE--EEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC----------------------
T ss_pred             hhcCCCCCC--ceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccCcccCCCCCCcCC
Confidence            468776666  88999999888887631                     01132              136778888875


Q ss_pred             CCCCCeeeeCCCCCCCCCCCCCC
Q 044268           68 LSQVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        68 ~~~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      .   . .|.|++||+|. .|+..
T Consensus       382 ~---~-~C~C~~G~~G~-~Ce~c  399 (426)
T 3zyj_B          382 N---V-RCLCPAAYTGI-LCEKL  399 (426)
T ss_dssp             -----------------------
T ss_pred             C---C-CCcCCCCCcCC-CCcCC
Confidence            4   2 79999999999 88753

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=97.10  E-value=9.1e-05  Score=51.98  Aligned_cols=40  Identities=25%  Similarity=0.756  Sum_probs=30.6

Q ss_pred             CCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc--CCCCc
Q 044268            6 EEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA--GEHCE   48 (138)
Q Consensus         6 ~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~--g~~C~   48 (138)
                      .++|+|... .++|..++.|.++.++  |.|.|.+||.  |..|.
T Consensus         3 ~DiDEC~~~-~~~C~~~a~C~Nt~Gs--y~C~C~~Gy~GnG~~C~   44 (285)
T 1gl4_A            3 LAQQTCANN-RHQCSVHAECRDYATG--FCCRCVANYTGNGRQCV   44 (285)
T ss_dssp             ----CHHHH-GGGSCTTEEEEECSSC--EEEEECTTEEECSSSEE
T ss_pred             ccchhccCC-CCCCCCCCEeEcCCCC--eEEEcCCCCCCCCCcCC
Confidence            368899744 3489988999999999  9999999998  56784

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=97.08  E-value=0.00014  Score=41.15  Aligned_cols=31  Identities=35%  Similarity=0.935  Sum_probs=19.1

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      .|.|| .|.-......+.|.|.+||+|..|+.
T Consensus        47 yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~   77 (79)
T 1xdt_R           47 FCIHG-ECKYVKELRAPSCICHPGYHGERCHG   77 (79)
T ss_dssp             CCSSE-EECCBGGGTBCCEEECTTEESTTCCE
T ss_pred             cCCCC-EeeeecCCCCeEEEcCCCcccccccc
Confidence            67775 77432211126788888888877763

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=97.08  E-value=0.00031  Score=45.15  Aligned_cols=35  Identities=37%  Similarity=0.992  Sum_probs=28.6

Q ss_pred             CccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268           10 MCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus        10 ~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      .|..+   +|.+++.|.+....  |.|.|.+||.|..|+.
T Consensus       121 ~~~~~---~C~~~g~C~~~~~~--~~c~C~~g~~g~~C~~  155 (164)
T 3cfw_A          121 SCQPW---SCSGHGECVEIINN--YTCNCDVGYYGPQCQF  155 (164)
T ss_dssp             CCCTT---SSCSSEEEEEETTE--EEEEECTTCBSSSSCB
T ss_pred             CCCCC---cCCCCCeecccCCC--ceeeeCCCcccccccc
Confidence            45556   88888899888777  9999999999998863

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=97.03  E-value=0.00056  Score=57.01  Aligned_cols=43  Identities=28%  Similarity=0.872  Sum_probs=36.7

Q ss_pred             CCCCccCccCCCCccCCCCCEEeecCCCcceEeeCC-CCCcCCCCccCC
Q 044268            4 CDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCP-AGYAGEHCEHSG   51 (138)
Q Consensus         4 C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~-~g~~g~~C~~~~   51 (138)
                      |....+.|..+   ||.|+|+|......  |.|.|+ ++|.|..|+.+.
T Consensus      1013 C~~~~~~C~~~---pC~ngG~C~~~~~~--~~C~C~~~g~~G~~C~~~~ 1056 (1245)
T 3qcw_A         1013 CEGPSTTCQED---SCSNQGVCLQQWDG--FSCDCSMTSFSGPLCNDPG 1056 (1245)
T ss_dssp             SSCCCCCCCTT---SSSSSCEEEEETTE--EEEECTTSSCBSTTSCBCC
T ss_pred             eecccCceECC---cCCCCCEeCCCCCC--CEEECCCCCCCCCCccCCC
Confidence            65445789888   99999999998887  999999 699999997644

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.02  E-value=0.00062  Score=37.66  Aligned_cols=43  Identities=23%  Similarity=0.648  Sum_probs=30.7

Q ss_pred             CCccCccCCCCccCCCCCEEeecCC-CcceEeeCCCCCc----CCCCccCCCCC
Q 044268            6 EEMTMCDGTNEFWCEHGGKCEEIVQ-GEMYDCKCPAGYA----GEHCEHSGTPC   54 (138)
Q Consensus         6 ~~~~~C~~~~~~pC~~~~~C~~~~~-~~~~~C~C~~g~~----g~~C~~~~~~C   54 (138)
                      .++++|... ...|.+  .|+++.+ +  |.|.|++||.    +..|. ++++|
T Consensus         3 ~d~~eC~~~-nggC~h--~C~n~~g~s--~~C~C~~Gy~L~~D~~tC~-d~dec   50 (69)
T 1kli_L            3 DDQLICVNE-NGGCEQ--YCSDHTGTK--RSCRCHEGYSLLADGVSCT-PTVEY   50 (69)
T ss_dssp             SCCCCTTSG-GGGCSS--EEEEETTTE--EEEECCTTEEECTTSSCEE-ECSSS
T ss_pred             cccccccCC-CCCcCC--EeEcCCCCC--EEEeCCCCCeECCCCCccc-Ccccc
Confidence            467888654 124765  8999988 7  9999999996    56674 44544

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=96.97  E-value=0.0014  Score=33.88  Aligned_cols=36  Identities=31%  Similarity=0.855  Sum_probs=26.4

Q ss_pred             CCCC---CCCCCCCCeeeeC-CCCCeeeeCCCCCCCCCCCCC
Q 044268           52 TPCG---QIFCFHEAQCLAL-SQVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        52 ~~C~---~~~C~~~g~C~~~-~~~~~~C~C~~g~~g~~~C~~   89 (138)
                      ++|.   ...|.+| +|... ..+.+.|.|+.||+|. +|+.
T Consensus        10 ~~C~~~~~~yC~nG-~C~~i~~~~~~~C~C~~gy~G~-RCe~   49 (50)
T 2rnl_A           10 NPCNAEFQNFCIHG-ECKYIEHLEAVTCKCQQEYFGE-RCGE   49 (50)
T ss_dssp             CTTTTTGGGTCSSS-EEEEETTTTEEEEECCSSCCSS-SCCC
T ss_pred             cccCchhhCcCCCC-EEEEecCCCCeeEECCCCcccc-cccc
Confidence            4554   2678875 99732 2247899999999999 9985

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.96  E-value=0.00044  Score=42.65  Aligned_cols=34  Identities=21%  Similarity=0.655  Sum_probs=27.3

Q ss_pred             CCCCCCeeeeCC-CCCe-eeeCCCCCCCCCCCCCCCC
Q 044268           58 FCFHEAQCLALS-QVHN-ACDCPPDWKGSADCSLPTL   92 (138)
Q Consensus        58 ~C~~~g~C~~~~-~~~~-~C~C~~g~~g~~~C~~~~~   92 (138)
                      ||.|+|+|+... ...+ .|.|++||+|. .|++...
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~-~Ce~~~~   37 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQ-HCEIDKS   37 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEEST-TSCEESS
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCc-cccccCc
Confidence            799999998763 1245 99999999999 9997554

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=96.96  E-value=0.0017  Score=33.50  Aligned_cols=41  Identities=34%  Similarity=0.777  Sum_probs=27.5

Q ss_pred             ccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268            8 MTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      .++|...-.+.|.|+ +|.-......+.|.|++||+|..|+.
T Consensus         9 ~~~C~~~~~~yC~nG-~C~~i~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A            9 KNPCNAEFQNFCIHG-ECKYIEHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             CCTTTTTGGGTCSSS-EEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred             CcccCchhhCcCCCC-EEEEecCCCCeeEECCCCcccccccc
Confidence            356653212369874 99743322238999999999999973

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=96.94  E-value=0.00034  Score=39.60  Aligned_cols=36  Identities=31%  Similarity=0.811  Sum_probs=26.9

Q ss_pred             CCCC---CCCCCCCCeeeeCC-CCCeeeeCCCCCCCCCCCCC
Q 044268           52 TPCG---QIFCFHEAQCLALS-QVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        52 ~~C~---~~~C~~~g~C~~~~-~~~~~C~C~~g~~g~~~C~~   89 (138)
                      ++|.   .++|.|| +|.... .+.+.|.|++||+|. +|+.
T Consensus        38 ~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~-RCE~   77 (79)
T 1xdt_R           38 DPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGE-RCHG   77 (79)
T ss_dssp             -CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEEST-TCCE
T ss_pred             CCCCccccCcCCCC-EeeeecCCCCeEEEcCCCcccc-cccc
Confidence            5666   5789997 895322 137899999999999 9985

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.94  E-value=0.0007  Score=35.15  Aligned_cols=25  Identities=24%  Similarity=0.526  Sum_probs=21.1

Q ss_pred             CCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           57 IFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        57 ~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      .+|.+  .|+++. ++|.|.|++||.+.
T Consensus        20 ~~C~~--~C~n~~-Gsy~C~C~~Gy~~~   44 (53)
T 1apq_A           20 PQCQH--LCHNYV-GGYFCSCRPGYELQ   44 (53)
T ss_dssp             CTTSS--EEEEET-TEEEEECSTTCEEC
T ss_pred             CCCCC--EeECCC-CCeEEECCCCCeEC
Confidence            56863  899998 69999999999865

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=96.92  E-value=0.00012  Score=44.18  Aligned_cols=36  Identities=25%  Similarity=0.866  Sum_probs=3.6

Q ss_pred             CCCCCCccCccC-CCCccCCCCCEEeecCCCcceEeeCCCCCcCC
Q 044268            2 KFCDEEMTMCDG-TNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGE   45 (138)
Q Consensus         2 ~~C~~~~~~C~~-~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~   45 (138)
                      ..|+ ++|+|.. .   +|.  +.|+++.++  |.|.|++||.+.
T Consensus        64 ~~C~-dideC~~~~---~C~--~~C~n~~gs--y~C~C~~Gy~~~  100 (107)
T 2w2n_E           64 RRCE-DIDECQDPD---TCS--QLCVNLEGG--YKCQCEEGFQLD  100 (107)
T ss_dssp             TEEE-C---------------------------------------
T ss_pred             Cccc-cccccCCCC---CcC--CeeecCCCC--EEEECCCCceEC
Confidence            5687 8999974 5   896  699999998  999999999864

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=96.88  E-value=0.00095  Score=49.11  Aligned_cols=43  Identities=30%  Similarity=0.658  Sum_probs=35.7

Q ss_pred             CCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCC-CCCCCCCCCCC
Q 044268           46 HCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPP-DWKGSADCSLP   90 (138)
Q Consensus        46 ~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~-g~~g~~~C~~~   90 (138)
                      .|....+.|...||.++++|.... ..|.|.|+. +|.|. .|+..
T Consensus       180 gC~~~~~~C~~~pC~n~g~C~~~~-~~~~C~C~~~~~~G~-~C~~~  223 (410)
T 3asi_A          180 GCEGPSTTCQEDSCSNQGVCLQQW-DGFSCDCSMTSFSGP-LCNDP  223 (410)
T ss_dssp             SCCCCSSCCCTTSSSTTCEEEECS-SSEEEECTTTSEEST-TSCEE
T ss_pred             CCCCCCCCcccccCCCCCEecCCC-CCceEeccCCcccCC-CCCCC
Confidence            454445688889999999999887 599999996 99999 99853

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=96.87  E-value=0.00069  Score=35.03  Aligned_cols=30  Identities=37%  Similarity=1.013  Sum_probs=15.2

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCc
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCE   48 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~   48 (138)
                      .|.| |+|.-......+.|.|++||+|..|+
T Consensus        15 yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 1iox_A           15 YCIK-GRCRFVVAEQTPSCVCDEGYIGARCE   44 (50)
T ss_dssp             SCTT-CCEEEETTTTEEEECCCTTEETTTTC
T ss_pred             cccC-CEEEeEcCCCCeEEECCCCcccCCCC
Confidence            4665 45642221112566666666666665

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=96.86  E-value=0.00079  Score=44.33  Aligned_cols=34  Identities=24%  Similarity=0.660  Sum_probs=27.3

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCCC
Q 044268           52 TPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      ..|. .+|.|+|.|+.    ...|.|+.||+|. .|+...
T Consensus       149 ~~C~-~~C~ngG~Cv~----P~~C~C~~Gw~G~-~C~~~~  182 (188)
T 2ygo_A          149 AECP-GGCRNGGFCNE----RRICECPDGFHGP-HCEGTK  182 (188)
T ss_dssp             CCCT-TCCCTTCEECT----TSCEECCTTCBTT-TTCBC-
T ss_pred             CccC-CCCCCCCEeCC----CCcccCcCCCCCC-CCcCCc
Confidence            3564 78999999974    4579999999999 998643

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=96.83  E-value=0.0013  Score=33.92  Aligned_cols=33  Identities=33%  Similarity=0.799  Sum_probs=25.9

Q ss_pred             CCCCCCCCeeeeCC-CCCeeeeCCCCCCCCCCCCCC
Q 044268           56 QIFCFHEAQCLALS-QVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        56 ~~~C~~~g~C~~~~-~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      ..+|.+| +|.... ...+.|.|++||+|. +|+..
T Consensus        13 ~~yC~nG-~C~~~~~~~~~~C~C~~gy~G~-RCe~~   46 (50)
T 3e50_C           13 TQFCFHG-TCRFLVQEDKPACVCHSGYVGA-RCEHA   46 (50)
T ss_pred             cCcccCC-EEeeccCCCCeEEECCCCCccc-CCCce
Confidence            3678887 998532 137899999999999 99864

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=96.82  E-value=0.00081  Score=34.77  Aligned_cols=33  Identities=18%  Similarity=0.648  Sum_probs=25.3

Q ss_pred             CCCCCCCeeeeC-CCCCeeeeCCCCCCCCCCCCCCC
Q 044268           57 IFCFHEAQCLAL-SQVHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        57 ~~C~~~g~C~~~-~~~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      ..|.| |+|... ..+.+.|.|+.||+|. +|+...
T Consensus        14 ~yC~n-G~C~~~~~~~~~~C~C~~gy~G~-RCe~~~   47 (50)
T 1iox_A           14 HYCIK-GRCRFVVAEQTPSCVCDEGYIGA-RCERVD   47 (50)
T ss_dssp             TSCTT-CCEEEETTTTEEEECCCTTEETT-TTCEEC
T ss_pred             CcccC-CEEEeEcCCCCeEEECCCCcccC-CCCeec
Confidence            67888 689632 2247899999999999 998654

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=96.80  E-value=0.00026  Score=45.10  Aligned_cols=37  Identities=22%  Similarity=0.663  Sum_probs=32.3

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCC
Q 044268           52 TPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      .+|...||.+++.|.+.. ..|.|.|.+||+|. .||..
T Consensus       120 ~~~~~~pc~~~g~C~~~~-~~~~c~C~~g~~g~-~Ce~~  156 (157)
T 1g1t_A          120 AACTNTSCSGHGECVETI-NNYTCKCDPGFSGL-KCEQI  156 (157)
T ss_dssp             CCCCTTGGGGSEEEEEET-TEEEEEECTTEEST-TSCEE
T ss_pred             CCCCCCCCCCCCEeecCC-CCeeEECCCCccCc-ccccc
Confidence            567778999999999887 59999999999999 99863

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=96.76  E-value=0.001  Score=43.76  Aligned_cols=27  Identities=48%  Similarity=1.179  Sum_probs=23.4

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      +|.|+|.|+. +    ..|.|++||+|..|+.
T Consensus       154 ~C~ngG~Cv~-P----~~C~C~~Gw~G~~C~~  180 (188)
T 2ygo_A          154 GCRNGGFCNE-R----RICECPDGFHGPHCEG  180 (188)
T ss_dssp             CCCTTCEECT-T----SCEECCTTCBTTTTCB
T ss_pred             CCCCCCEeCC-C----CcccCcCCCCCCCCcC
Confidence            6999999975 3    4599999999999975

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=96.42  E-value=0.0023  Score=40.59  Aligned_cols=34  Identities=21%  Similarity=0.655  Sum_probs=26.9

Q ss_pred             CCCCCCeeeeCC-CCCe-eeeCCCCCCCCCCCCCCCC
Q 044268           58 FCFHEAQCLALS-QVHN-ACDCPPDWKGSADCSLPTL   92 (138)
Q Consensus        58 ~C~~~g~C~~~~-~~~~-~C~C~~g~~g~~~C~~~~~   92 (138)
                      ||.|+|+|.... ...+ .|.|++||.|. .|++...
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~-~Cei~~~   49 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQ-HCEIDKS   49 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEEST-TSCEESS
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCC-ceecccc
Confidence            899999997651 1245 89999999999 9987543

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=96.40  E-value=0.0032  Score=52.51  Aligned_cols=44  Identities=30%  Similarity=0.654  Sum_probs=36.5

Q ss_pred             CCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCC-CCCCCCCCCCCCC
Q 044268           46 HCEHSGTPCGQIFCFHEAQCLALSQVHNACDCP-PDWKGSADCSLPT   91 (138)
Q Consensus        46 ~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~-~g~~g~~~C~~~~   91 (138)
                      .|....+.|...||.|+|+|.... ..|.|.|+ ++|+|. .|+...
T Consensus      1012 gC~~~~~~C~~~pC~ngG~C~~~~-~~~~C~C~~~g~~G~-~C~~~~ 1056 (1245)
T 3qcw_A         1012 GCEGPSTTCQEDSCSNQGVCLQQW-DGFSCDCSMTSFSGP-LCNDPG 1056 (1245)
T ss_dssp             SSSCCCCCCCTTSSSSSCEEEEET-TEEEEECTTSSCBST-TSCBCC
T ss_pred             eeecccCceECCcCCCCCEeCCCC-CCCEEECCCCCCCCC-CccCCC
Confidence            454445789899999999999887 48999999 699999 998643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.24  E-value=0.0011  Score=48.42  Aligned_cols=40  Identities=28%  Similarity=0.910  Sum_probs=19.0

Q ss_pred             CCCCCCCccCcc-CCCCccCCCCCEEeecCCCcceEeeCCCCCc----CCCCc
Q 044268            1 GKFCDEEMTMCD-GTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA----GEHCE   48 (138)
Q Consensus         1 g~~C~~~~~~C~-~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~   48 (138)
                      |..|+ ++++|. ..   +|.+  .|.++.++  |.|.|.+||.    |..|.
T Consensus        38 ~~~C~-d~~eC~~~~---~C~~--~C~~~~g~--~~C~C~~g~~l~~d~~~C~   82 (386)
T 3v65_B           38 GRTCQ-DVNECAEEG---YCSQ--GCTNSEGA--FQCWCEAGYELRPDRRSCK   82 (386)
T ss_dssp             ------------------CCTT--EEC-------CCEECCTTEEECTTSSCEE
T ss_pred             CCccC-ccceeCCcC---cccC--cCCCCCCC--CeEEECCCceEcCCCCeEC
Confidence            45784 899996 45   8986  49999998  9999999998    67775

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=96.23  E-value=0.023  Score=33.71  Aligned_cols=68  Identities=21%  Similarity=0.455  Sum_probs=50.2

Q ss_pred             cCccCCCCccCCCCCEEee-cCCCcceEeeCCCCCc--CCCCccCCCC-CCC--CCCCCCCeeeeCCCCCeeeeCCCCCC
Q 044268            9 TMCDGTNEFWCEHGGKCEE-IVQGEMYDCKCPAGYA--GEHCEHSGTP-CGQ--IFCFHEAQCLALSQVHNACDCPPDWK   82 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~-~~~~~~~~C~C~~g~~--g~~C~~~~~~-C~~--~~C~~~g~C~~~~~~~~~C~C~~g~~   82 (138)
                      +.|..+   -|..++.|.. .++.  ..|.|..||.  |..|... ++ |..  .-|...+.|.........|.|..+|+
T Consensus        11 h~C~~t---~Cp~NA~C~r~~~G~--e~CrCl~gY~~dg~~Cv~~-Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           11 HKCIDT---NVPENAACYRYLDGT--EEWRCLLGFKEVGGKCVPA-SITCEENNGGCAPEAECTMDDKKEVECKCTKEGS   84 (105)
T ss_dssp             TSCCSS---CCCTTEEEEECTTSC--EEEEECTTEEECSSSEEEC-CCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred             cEecCC---CCCCCCCeEECCCCC--EeEEEECCeeccCCEEEEC-CcchhhcCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence            346555   6888899988 5666  8999999998  5678544 66 653  45888889988752478999988854

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.19  E-value=0.013  Score=46.16  Aligned_cols=67  Identities=21%  Similarity=0.410  Sum_probs=40.4

Q ss_pred             ccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCCC--CCCCCCeeeeCCCCCeeeeCCCCCC---CCCCCC
Q 044268           17 FWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQI--FCFHEAQCLALSQVHNACDCPPDWK---GSADCS   88 (138)
Q Consensus        17 ~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~--~C~~~g~C~~~~~~~~~C~C~~g~~---g~~~C~   88 (138)
                      ++|.+ +.|++....-.+.+.|+.+..+...+-++++|...  .|.  ..|.+.. ++|.|.|++||.   |. .|+
T Consensus       261 ~~C~~-g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~eC~~~~~~C~--~~C~~~~-~~~~C~C~~G~~~~~~~-~C~  332 (699)
T 1n7d_A          261 FKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS--HVCNDLK-IGYECLCPDGFQLVAQR-RCE  332 (699)
T ss_dssp             CCCTT-SCCCCSSCCSCSSCCSSSSCSCCCSSCCCCCTTSSTTTSC--TTCCCCT-TCCCCCCCSSSCCCSSS-CCC
T ss_pred             eecCC-CcEeCCcccccccceecCcccccccccccccccccccCcC--CCcccCC-CCcEEeCCCCeEcCCCC-ccc
Confidence            35655 56765432211345677766544322245667542  353  4788887 599999999998   55 564

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=95.98  E-value=0.0032  Score=47.88  Aligned_cols=54  Identities=19%  Similarity=0.340  Sum_probs=34.1

Q ss_pred             eEe-eCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCC---CCCeeeeCCCCCCCCCCCCC
Q 044268           34 YDC-KCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALS---QVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        34 ~~C-~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~---~~~~~C~C~~g~~g~~~C~~   89 (138)
                      +.| .|.+||.|..|+ ....|..-+|.+.++|....   ...+.|.|++||+|. .|+.
T Consensus       418 ~~C~~C~~Gy~G~~c~-~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~-~Ce~  475 (525)
T 4aqs_A          418 ERCDVCKEGFYDLSAE-DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQ-RCDQ  475 (525)
T ss_dssp             TTTCEECTTEECCCTT-STTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCST-TTCC
T ss_pred             CcccCCCCCCcCCCCC-CCCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCC-Cccc
Confidence            444 566666666553 33456555666666654321   024679999999999 9974

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=95.96  E-value=0.014  Score=34.37  Aligned_cols=63  Identities=22%  Similarity=0.549  Sum_probs=45.7

Q ss_pred             cCCCCCEEeec-CCCcceEeeCCCCCc--CCCCccCC-CCCCC--CCCCCCCeeeeCCC----CCeeeeCCCCCC
Q 044268           18 WCEHGGKCEEI-VQGEMYDCKCPAGYA--GEHCEHSG-TPCGQ--IFCFHEAQCLALSQ----VHNACDCPPDWK   82 (138)
Q Consensus        18 pC~~~~~C~~~-~~~~~~~C~C~~g~~--g~~C~~~~-~~C~~--~~C~~~g~C~~~~~----~~~~C~C~~g~~   82 (138)
                      -|..++.|... ++.  ..|.|.+||.  |..|.... ..|..  .-|...+.|.....    ....|.|.++|+
T Consensus        11 ~C~~NA~C~r~~~g~--e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~   83 (99)
T 1ob1_C           11 QCPQNSGCFRHLDER--EECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS   83 (99)
T ss_dssp             CCCTTEEEECCTTSC--CEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred             CCCCCCCeEEcCCCC--EEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence            67778899774 455  8999999998  45674332 56764  34777888987652    368999998865

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.92  E-value=0.0086  Score=47.84  Aligned_cols=64  Identities=19%  Similarity=0.298  Sum_probs=35.0

Q ss_pred             ccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCC
Q 044268           17 FWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWK   82 (138)
Q Consensus        17 ~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~   82 (138)
                      ++|.+ +.|++....-...+.|..++.....+-.+++|......-...|.+.. ++|.|.|++||.
T Consensus       279 ~~C~~-G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~~~~~~C~~~C~~~~-~~y~C~C~~Gy~  342 (791)
T 3m0c_C          279 FKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLK-IGYECLCPDGFQ  342 (791)
T ss_dssp             CCCTT-SCCCCSSCCSCSSCCSSSSCSCCCTTBSCCSTTTGGGGCSSEEEECS-BSEEEECCTTCE
T ss_pred             cccCC-CcccccccccCCccccccccCccccccccccccccccCccccccCCC-CCcccCCCCCCc
Confidence            35665 46665433211345666665443211123455432211123899888 699999999995

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=95.86  E-value=0.0047  Score=34.25  Aligned_cols=34  Identities=15%  Similarity=0.152  Sum_probs=25.8

Q ss_pred             CCCCCCC--CCCCCCCeeeeCCCCCeeee-CCCCCCCC
Q 044268           50 SGTPCGQ--IFCFHEAQCLALSQVHNACD-CPPDWKGS   84 (138)
Q Consensus        50 ~~~~C~~--~~C~~~g~C~~~~~~~~~C~-C~~g~~g~   84 (138)
                      ++++|..  .+|.++++|+++. ++|.|. +..||.+.
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~-Gsy~C~~~~~g~~~~   38 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHY-GGYLCLPRSAAVIND   38 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETT-CCEEEEETTSCCCSC
T ss_pred             ccccccCCCCCCCCCCEeECCC-CCeEecccCCccccc
Confidence            4677764  5798888999998 699998 45677654

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=95.79  E-value=0.0016  Score=48.32  Aligned_cols=41  Identities=39%  Similarity=0.928  Sum_probs=0.0

Q ss_pred             ccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCC
Q 044268           17 FWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALS   69 (138)
Q Consensus        17 ~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~   69 (138)
                      .||.|+++|.+..     .|.|++||.|..|+.       -+|.++|+|....
T Consensus       371 ~~C~ngg~C~~~~-----~C~C~~G~~G~~Ce~-------c~C~~~g~C~~~~  411 (426)
T 3zyj_B          371 LHCQNGGTCHNNV-----RCLCPAAYTGILCEK-------LRCEEAGSCGSDS  411 (426)
T ss_dssp             -----------------------------------------------------
T ss_pred             ccCCCCCCcCCCC-----CCcCCCCCcCCCCcC-------CCCCCCCcccCCC
Confidence            3788999997653     699999999998863       3577788886543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.57  E-value=0.0027  Score=47.64  Aligned_cols=38  Identities=42%  Similarity=1.100  Sum_probs=5.6

Q ss_pred             CCCCCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268            1 GKFCDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus         1 g~~C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      |..|+  .+.|.+    +|.|+++|+..     +.|.|.+||+|..|+.
T Consensus       418 G~~C~--~~~C~~----~C~~~g~C~~~-----~~C~C~~G~~G~~C~~  455 (463)
T 2wg3_C          418 GDFCR--TAKCEP----ACRHGGVCVRP-----NKCLCKKGYLGPQCEQ  455 (463)
T ss_dssp             STTSC--EECC--------------------------------------
T ss_pred             CCcCC--cCcCCC----CCCCCCEECCC-----CEEECCCCcccCCCCC
Confidence            56775  456753    69999999763     6799999999999974

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=95.56  E-value=0.002  Score=45.20  Aligned_cols=38  Identities=21%  Similarity=0.642  Sum_probs=28.8

Q ss_pred             CCCCCC--CCCCCCCCeeeeCCCCCeeeeCCCCCCCCC-CCC
Q 044268           50 SGTPCG--QIFCFHEAQCLALSQVHNACDCPPDWKGSA-DCS   88 (138)
Q Consensus        50 ~~~~C~--~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~-~C~   88 (138)
                      ++++|.  ..+|..++.|.++. ++|.|.|.+||.|++ .|.
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~-Gsy~C~C~~Gy~GnG~~C~   44 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYA-TGFCCRCVANYTGNGRQCV   44 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECS-SCEEEEECTTEEECSSSEE
T ss_pred             cchhccCCCCCCCCCCEeEcCC-CCeEEEcCCCCCCCCCcCC
Confidence            467776  46898889999998 699999999999652 464

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=95.52  E-value=0.0039  Score=32.17  Aligned_cols=32  Identities=28%  Similarity=0.670  Sum_probs=23.8

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCc----CCCCccCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYA----GEHCEHSGTPC   54 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~~~~~~C   54 (138)
                      +|.+  .|++++++  |.|.|++||.    +..|. +++++
T Consensus         7 ~C~~--~C~n~~gs--~~C~C~~Gy~L~~d~~tC~-dide~   42 (51)
T 1kig_L            7 GCDQ--FCREERSE--VRCSCAHGYVLGDDSKSCV-STERF   42 (51)
T ss_dssp             SSSS--CCCEETTE--ECCCCCTTEEECTTSSCEE-ECSSS
T ss_pred             CcCC--EeEcCCCC--eEEeCCCCcEECCCCCccc-cCCcc
Confidence            5654  68999988  9999999996    56674 44443

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=95.23  E-value=0.013  Score=30.44  Aligned_cols=32  Identities=28%  Similarity=0.763  Sum_probs=24.3

Q ss_pred             cCCCCCEEeecCC-CcceEeeCCCCCc----CCCCccCCCCC
Q 044268           18 WCEHGGKCEEIVQ-GEMYDCKCPAGYA----GEHCEHSGTPC   54 (138)
Q Consensus        18 pC~~~~~C~~~~~-~~~~~C~C~~g~~----g~~C~~~~~~C   54 (138)
                      .|.+  .|+++.+ +  |.|.|++||.    ++.|. ++++|
T Consensus         8 gC~~--~C~n~~ggs--~~C~C~~Gy~L~~Dg~tC~-d~dec   44 (53)
T 2bz6_L            8 GCEQ--YCSDHTGTK--RSCRCHEGYSLLADGVSCT-PTVEY   44 (53)
T ss_dssp             GCSS--EEEEETTTE--EEEECCTTEEECTTSSCEE-ECSSS
T ss_pred             CcCC--EeEcCCCCC--EEeeCCCCCEECCCCCccc-CCccc
Confidence            4654  7999888 6  9999999996    56674 55554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.10  E-value=0.0093  Score=43.66  Aligned_cols=35  Identities=20%  Similarity=0.433  Sum_probs=27.3

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeeeeCCCCCC---CCCCCC
Q 044268           52 TPCGQIFCFHEAQCLALSQVHNACDCPPDWK---GSADCS   88 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~---g~~~C~   88 (138)
                      ++|...+|..++.|.+.. ++|.|.|++||.   |. .|+
T Consensus         1 ~eC~~~~~~c~~~C~~~~-~~y~C~C~~G~~~~~~~-~C~   38 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLK-IGYECLCPDGFQLVAQR-RCE   38 (400)
T ss_dssp             CCTTTTGGGCSSEEEECS-SSEEEECCTTEEECSSS-CEE
T ss_pred             CcccCCCCCCCCEeECCC-CCeEEECCCCCCcCCCC-ccc
Confidence            356666776677999988 699999999998   55 553

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=94.67  E-value=0.0055  Score=39.57  Aligned_cols=41  Identities=17%  Similarity=0.310  Sum_probs=30.4

Q ss_pred             CCCcCCCCccCCCCCCCCC-----CCCCCeeeeCCCCCeeeeCCCCCCC
Q 044268           40 AGYAGEHCEHSGTPCGQIF-----CFHEAQCLALSQVHNACDCPPDWKG   83 (138)
Q Consensus        40 ~g~~g~~C~~~~~~C~~~~-----C~~~g~C~~~~~~~~~C~C~~g~~g   83 (138)
                      .||.+..+..++++|...+     |.+  .|.+.. ++|.|.|++||..
T Consensus       113 ~Gf~~~~~~~di~eC~~~~~~~~~C~~--~C~n~~-g~~~C~C~~Gy~l  158 (170)
T 1szb_A          113 TGFEAFYAAEDIDECQVAPGEAPTCDH--HCHNHL-GGFYCSCRAGYVL  158 (170)
T ss_dssp             CEEEEEEEEEECCTTCCCTTSCCSSSS--EEEEET-TEEEEECCTTEEE
T ss_pred             cCceeeeeccccCcccCCCCCCCccCC--ccccCC-CCEEEeCCCCcEE
Confidence            5565555545677887543     765  799888 6899999999983

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=94.43  E-value=0.022  Score=36.69  Aligned_cols=34  Identities=32%  Similarity=0.859  Sum_probs=25.6

Q ss_pred             CCccCccCCCC--ccCCCCCEEeecCCCcceEeeCCCCCc
Q 044268            6 EEMTMCDGTNE--FWCEHGGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus         6 ~~~~~C~~~~~--~pC~~~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      .++++|.....  .+|.+  .|.+..++  |.|.|.+||.
T Consensus       122 ~di~eC~~~~~~~~~C~~--~C~n~~g~--~~C~C~~Gy~  157 (170)
T 1szb_A          122 EDIDECQVAPGEAPTCDH--HCHNHLGG--FYCSCRAGYV  157 (170)
T ss_dssp             EECCTTCCCTTSCCSSSS--EEEEETTE--EEEECCTTEE
T ss_pred             cccCcccCCCCCCCccCC--ccccCCCC--EEEeCCCCcE
Confidence            35678876500  12776  79999998  9999999997

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=92.81  E-value=0.077  Score=34.01  Aligned_cols=31  Identities=26%  Similarity=0.669  Sum_probs=25.1

Q ss_pred             CCCCCCeeeeCCC-CCeee-eCCCCCCCCCCCCC
Q 044268           58 FCFHEAQCLALSQ-VHNAC-DCPPDWKGSADCSL   89 (138)
Q Consensus        58 ~C~~~g~C~~~~~-~~~~C-~C~~g~~g~~~C~~   89 (138)
                      ||.++++|..... +.+.| .|+++|+|. .|+.
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~-~Ce~   34 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGK-RCEL   34 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEEST-TSCE
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCC-CCcC
Confidence            5888899987542 36899 799999999 9985

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=92.66  E-value=0.14  Score=41.54  Aligned_cols=40  Identities=25%  Similarity=0.537  Sum_probs=32.6

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCC
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSG   51 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~   51 (138)
                      +.+.|.-+   ||.|++.+......  ..|.|+++|.|..|+...
T Consensus       496 e~~~c~C~---PC~ngg~~~l~g~~--C~C~C~~g~~G~~Ce~~~  535 (913)
T 3t5o_A          496 KFDPCQCA---PCPNNGRPTLSGTE--CLCVCQSGTYGENCEKQS  535 (913)
T ss_dssp             TTCGGGSC---CBTTTBEEEEETTE--EEEECCTTBCSTTSCCBC
T ss_pred             ccccccCC---CCCCCCEeecCCCc--eEEEccCCccccCccCcc
Confidence            45677667   99999999876666  889999999999997643

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=92.51  E-value=0.074  Score=27.62  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=19.1

Q ss_pred             CCCCCCCeeeeCCCCCeeeeCCCCCC
Q 044268           57 IFCFHEAQCLALSQVHNACDCPPDWK   82 (138)
Q Consensus        57 ~~C~~~g~C~~~~~~~~~C~C~~g~~   82 (138)
                      .+|..  .|+++. ++|.|.|++||.
T Consensus         9 ~~C~~--~C~nt~-Gsy~C~C~~Gy~   31 (55)
T 2jkh_L            9 GDCDQ--FCHEEQ-NSVVCSCARGYT   31 (55)
T ss_dssp             GGCSS--EEEEET-TEEEEECCTTEE
T ss_pred             CCcCc--EeEcCC-CCeEEeCCCCCE
Confidence            35654  899988 699999999997

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=92.27  E-value=0.098  Score=28.64  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=23.4

Q ss_pred             cCCCCCCC--CCCCCCCeeeeCCCC-CeeeeCCCCCCC
Q 044268           49 HSGTPCGQ--IFCFHEAQCLALSQV-HNACDCPPDWKG   83 (138)
Q Consensus        49 ~~~~~C~~--~~C~~~g~C~~~~~~-~~~C~C~~g~~g   83 (138)
                      .++++|..  ..|..  .|.+.. + +|.|.|++||.-
T Consensus         3 ~d~~eC~~~nggC~h--~C~n~~-g~s~~C~C~~Gy~L   37 (69)
T 1kli_L            3 DDQLICVNENGGCEQ--YCSDHT-GTKRSCRCHEGYSL   37 (69)
T ss_dssp             SCCCCTTSGGGGCSS--EEEEET-TTEEEEECCTTEEE
T ss_pred             cccccccCCCCCcCC--EeEcCC-CCCEEEeCCCCCeE
Confidence            35667753  34654  798887 5 699999999963

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=92.07  E-value=0.29  Score=25.80  Aligned_cols=27  Identities=33%  Similarity=0.876  Sum_probs=21.3

Q ss_pred             cCCCCCEEeecC-CCcceEeeCCCCCc----CCCCc
Q 044268           18 WCEHGGKCEEIV-QGEMYDCKCPAGYA----GEHCE   48 (138)
Q Consensus        18 pC~~~~~C~~~~-~~~~~~C~C~~g~~----g~~C~   48 (138)
                      .|.+  .|++++ ++  |.|.|++||.    +..|.
T Consensus         8 gC~~--~C~n~~~gs--~~C~C~~Gy~L~~D~~tC~   39 (59)
T 2wph_E            8 RCEQ--FCKNSADNK--VVCSCTEGYRLAENQKSCE   39 (59)
T ss_dssp             GCSS--EEEECSTTC--EEEECCTTEEECTTSSCEE
T ss_pred             CcCC--EeEeCCCCC--EEeeCCCCcEECCCCCccc
Confidence            4654  799988 57  9999999996    55674

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=91.51  E-value=0.17  Score=31.89  Aligned_cols=33  Identities=27%  Similarity=0.785  Sum_probs=23.5

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      ++++|......+|.  ..|.+..++  |.|.|.+||.
T Consensus       116 d~~eC~~~~~~~C~--~~C~n~~g~--~~C~C~~Gy~  148 (159)
T 1nzi_A          116 DINECTDFVDVPCS--HFCNNFIGG--YFCSCPPEYF  148 (159)
T ss_dssp             ECCTTTC-CCCCSS--SEEEEETTE--EEEECCTTCE
T ss_pred             cCcccCCCCCCCCC--CcccCcCCC--EEEecCCCcE
Confidence            45677643112464  489998888  9999999997

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=90.90  E-value=0.33  Score=35.43  Aligned_cols=16  Identities=31%  Similarity=0.760  Sum_probs=14.4

Q ss_pred             eEeeCCCCCcCCCCcc
Q 044268           34 YDCKCPAGYAGEHCEH   49 (138)
Q Consensus        34 ~~C~C~~g~~g~~C~~   49 (138)
                      +.|.|.++|.|..|+.
T Consensus       272 ~~C~C~~nt~G~~Ce~  287 (375)
T 4aqt_A          272 LMCNCKHNTYGVDCEK  287 (375)
T ss_dssp             EEECCCTTEESTTSCE
T ss_pred             eeeeCcCCCcCCCccc
Confidence            7899999999999975

>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*

Probab=89.78  E-value=0.19  Score=35.25  Aligned_cols=54  Identities=28%  Similarity=0.652  Sum_probs=33.5

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCC---------CCCCC----CCCCCCeeeeCCCCCeeeeCCCCCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGT---------PCGQI----FCFHEAQCLALSQVHNACDCPPDWK   82 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~---------~C~~~----~C~~~g~C~~~~~~~~~C~C~~g~~   82 (138)
                      +|..+|.|.-      -.|.|.+||.|..|+-..+         .|...    .|...|.|.-     ..|.|..++.
T Consensus       197 ~C~g~G~~~C------G~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~C-----G~C~C~~~~~  263 (280)
T 2p26_A          197 LCHGKGFLEC------GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC-----GQCLCHTSDV  263 (280)
T ss_dssp             GGGGSEEEET------TEEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEET-----TEEEECCCSS
T ss_pred             ccCCCCeECC------CceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeC-----CeeECcCCCC
Confidence            3554455531      2589999999999863222         46532    3666677752     3588876653

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=88.59  E-value=0.056  Score=42.60  Aligned_cols=47  Identities=21%  Similarity=0.504  Sum_probs=36.9

Q ss_pred             eeCCCCCcCCCCccCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCC
Q 044268           36 CKCPAGYAGEHCEHSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        36 C~C~~g~~g~~C~~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      ..|.++|.|.+|.+. ..|. ..|..+|.|...     .|+|.+||.|. .|...
T Consensus       520 ~~C~~gw~g~dc~i~-~~Cp-~~C~ghG~C~~G-----~C~Cd~G~~G~-~C~~~  566 (725)
T 2e26_A          520 FDKQQTWAIDNVYIG-DGCL-DMCSGHGRCVQG-----SCVCDEQWGGL-YCDEP  566 (725)
T ss_dssp             CCTTCCEEEEEEEEE-SCSS-GGGGGSEEEETT-----EEEECTTEEST-TSCEE
T ss_pred             CccCCCccccccccc-CCCC-cccCCCcEECCC-----CEeeCCCccCC-CcCcc
Confidence            368999999999632 4564 589999999752     59999999999 88753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=87.52  E-value=0.21  Score=35.70  Aligned_cols=34  Identities=29%  Similarity=0.840  Sum_probs=19.6

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc----CCCCc
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA----GEHCE   48 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~   48 (138)
                      |+|. . ...|.+  .|.++.++  |.|.|.+||.    +..|.
T Consensus         2 ~ec~-~-~~~C~~--~C~n~~g~--~~C~C~~g~~l~~d~~~C~   39 (349)
T 3v64_C            2 NECA-E-EGYCSQ--GCTNSEGA--FQCWCEAGYELRPDRRSCK   39 (349)
T ss_dssp             ---------CCSS--EECCC-----CCEECCTTEEECTTSSCEE
T ss_pred             cccC-C-CCCCcC--eeecCCCC--eEEECCCCccCCCCCCccc
Confidence            5665 2 226876  89999998  9999999996    45564

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=87.04  E-value=0.17  Score=31.93  Aligned_cols=32  Identities=22%  Similarity=0.515  Sum_probs=23.9

Q ss_pred             cCCCCCCC---CCCCCCCeeeeCCCCCeeeeCCCCCCC
Q 044268           49 HSGTPCGQ---IFCFHEAQCLALSQVHNACDCPPDWKG   83 (138)
Q Consensus        49 ~~~~~C~~---~~C~~~g~C~~~~~~~~~C~C~~g~~g   83 (138)
                      .++++|..   .+|.  ..|.+.. +.+.|.|.+||..
T Consensus       115 ~d~~eC~~~~~~~C~--~~C~n~~-g~~~C~C~~Gy~l  149 (159)
T 1nzi_A          115 TDINECTDFVDVPCS--HFCNNFI-GGYFCSCPPEYFL  149 (159)
T ss_dssp             EECCTTTC-CCCCSS--SEEEEET-TEEEEECCTTCEE
T ss_pred             ccCcccCCCCCCCCC--CcccCcC-CCEEEecCCCcEE
Confidence            45667764   3564  4798887 6899999999983

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}

Probab=84.97  E-value=0.71  Score=35.28  Aligned_cols=40  Identities=25%  Similarity=0.582  Sum_probs=29.2

Q ss_pred             ccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcC--CCCc
Q 044268            8 MTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAG--EHCE   48 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g--~~C~   48 (138)
                      .+.|....++||..++.|+....+ .|.|.|+.||.|  ..|.
T Consensus        18 ~~~c~~~~~~~c~~~a~C~~~~~~-~~~c~C~~G~ag~G~~c~   59 (551)
T 3fby_A           18 QRFCPDGSPSECHEHADCVLERDG-SRSCVCAVGWAGNGILCG   59 (551)
T ss_dssp             CCBCTTSSBCCCCTTEEEEECTTS-CEEEEECTTEESSSSSCE
T ss_pred             cccCCCCCCCCCCCCCeeEeCCCC-CEecCCCCCCCCCCcccC
Confidence            345765445699999999886443 389999999985  4564

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=84.13  E-value=0.47  Score=32.86  Aligned_cols=37  Identities=27%  Similarity=0.672  Sum_probs=24.7

Q ss_pred             ccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc----CCCCc
Q 044268            8 MTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA----GEHCE   48 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~   48 (138)
                      .|+|.......|.+  .|.++.+.  |+|.|..||.    +..|.
T Consensus         2 ~~eC~~~~~~~C~~--~C~~~~~~--~~C~C~~G~~l~~d~~sC~   42 (283)
T 3f1s_B            2 KNECHPERTDGCQH--FCLPGQES--YTCSCAQGYRLGEDHKQCV   42 (283)
T ss_dssp             -CCCCSSCSSSCSS--BCCCCTTS--CCCBCCTTEEECTTSSCEE
T ss_pred             CCccCCCCCCCCCC--EeeCCCCC--eEecCCCCcccCCCCCccc
Confidence            35664321125664  78888888  9999999986    44564

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=82.16  E-value=0.96  Score=36.81  Aligned_cols=39  Identities=18%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             CCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCCC
Q 044268           51 GTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        51 ~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      .+.|.-.||.+++.+.... ....|.|+++|.|. .|+...
T Consensus       497 ~~~c~C~PC~ngg~~~l~g-~~C~C~C~~g~~G~-~Ce~~~  535 (913)
T 3t5o_A          497 FDPCQCAPCPNNGRPTLSG-TECLCVCQSGTYGE-NCEKQS  535 (913)
T ss_dssp             TCGGGSCCBTTTBEEEEET-TEEEEECCTTBCST-TSCCBC
T ss_pred             cccccCCCCCCCCEeecCC-CceEEEccCCcccc-CccCcc
Confidence            3556556999999998765 37889999999999 998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	138
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	4e-07
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	7e-07
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	4e-05
d1k36a_	46	g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo	5e-05
d1ioxa_	50	g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)	2e-04
d1moxc_	49	g.3.11.1 (C:) Transforming growth factor alpha {Hu	2e-04
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	3e-04
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	3e-04
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	4e-04
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	4e-04
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	7e-04
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	8e-04
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	9e-04
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	0.001
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	0.001
d1xdtr_	41	g.3.11.1 (R:) Heparin-binding epidermal growth fac	0.002

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 4e-07
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGTPC 54
          C  +++ +C H G C  I   + Y C C  GY GE C++     
Sbjct: 4  CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDLKW 47

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (97), Expect = 7e-07
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
          C  + + +C +GG C  I   + Y C C  GY+G+ C+  
Sbjct: 6  CPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 4e-05
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
          C +GG C++ +    + C+CP G+AG+ CE
Sbjct: 6  CFNGGTCQQALYFSDFVCQCPEGFAGKSCE 35

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 5e-05
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 7  EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH 49
           +T C      +C HG  C  +V      C+C  GY G  CEH
Sbjct: 2  SITKCSSDMNGYCLHGQ-CIYLVDMSQNYCRCEVGYTGVRCEH 43

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH 49
          C    + +C  G  C  +V  +   C C  GY G  CE 
Sbjct: 8  CPKQYKHYCIKGR-CRFVVAEQTPSCVCDEGYIGARCER 45

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 49

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 2e-04
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS 50
          C  ++  +C HG  C  +VQ +   C C +GY G  CEH+
Sbjct: 7  CPDSHTQFCFHGT-CRFLVQEDKPACVCHSGYVGARCEHA 45

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 8  MTMCDGTNEFWCEHGGKCEEIV---QGEMYDCKCPAGYAGEHCEHSGTPCGQIFC 59
          +  C    + +C +GG+C  +        Y CKC  G+ G  C  +     Q   
Sbjct: 3  LVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQE 57

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 3e-04
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH 49
          C++   C + +    + C C  GY G HCE 
Sbjct: 9  CQNDATCLDQIGE--FQCICMPGYEGVHCEV 37

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
          C++ GKC++ +    Y C C  G+ G++CE
Sbjct: 8  CQNQGKCKDGLGE--YTCTCLEGFEGKNCE 35

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 4e-04
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
          C +GG C++ +    Y+C CP G+ G++CE
Sbjct: 11 CLNGGSCKDDINS--YECWCPFGFEGKNCE 38

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 7e-04
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH 49
          C   G+C E +    Y CKC  G++G  CE 
Sbjct: 9  CSGHGECVETINN--YTCKCDPGFSGLKCEQ 37

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 8e-04
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH 49
          C   G+C E +    Y C C  G+ G  CE+
Sbjct: 9  CSKQGECLETIGN--YTCSCYPGFYGPECEY 37

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 32.7 bits (75), Expect = 9e-04
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
          C++GG C++ +Q   Y C C   + G +CE
Sbjct: 10 CQNGGSCKDQLQS--YICFCLPAFEGRNCE 37

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.001
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
          C H G+C + +    + C+CP G+ G  C+
Sbjct: 8  CLHNGRCLDKINE--FQCECPTGFTGHLCQ 35

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.001
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE 48
          CEH GKC   +    ++C+C  GY G  CE
Sbjct: 13 CEHAGKCINTLGS--FECQCLQGYTGPRCE 40

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.6 bits (72), Expect = 0.002
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH 49
          C    + +C HG +C+ + +     C C  GY GE C  
Sbjct: 2  CLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCHG 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	99.32
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	99.26
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	99.26
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	99.25
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	99.22
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	99.16
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	99.16
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	99.14
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	99.11
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	99.11
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	99.08
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	99.05
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	99.05
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	99.0
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.96
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.92
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.92
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.92
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.89
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.88
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.87
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.84
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.81
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.78
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	98.73
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	98.62
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	98.58
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	98.46
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	98.35
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.32
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	98.25
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.05
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	97.88
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.77
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	97.72
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	97.69
d1szba2	45	Mannose-binding protein associated serine protease	97.64
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.59
d1nt0a3	45	Mannose-binding protein associated serine protease	97.59
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.58
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	97.56
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	97.52
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	97.51
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	97.5
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.49
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.45
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.4
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	97.3
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.3
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.19
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.12
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.12
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	96.87
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.79
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	96.77
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	96.34
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	96.25
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	96.16
d1szba2	45	Mannose-binding protein associated serine protease	96.09
d1nt0a3	45	Mannose-binding protein associated serine protease	96.08
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	95.74
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	95.34
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	94.45
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	94.26
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	93.68
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	93.24
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	92.19
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	89.32
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	88.9
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	88.7
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	87.64
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	82.81

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.3e-12  Score=63.73  Aligned_cols=39  Identities=33%  Similarity=0.979  Sum_probs=35.8

Q ss_pred             CCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268            6 EEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus         6 ~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      +++|+|.++   ||.|+++|++..++  |.|.|++||+|.+|++
T Consensus         1 id~d~C~~~---PC~ngg~C~~~~~~--y~C~C~~g~~G~~Cei   39 (39)
T d1edmb_           1 VDGDQCESN---PCLNGGSCKDDINS--YECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCCCTTTTC---CCCTTCEEEEETTE--EEEECCTTCCSTTSCC
T ss_pred             CccccCCCC---CCCCCcEEEcCCCC--EEEECCCCCCCCCCCC
Confidence            367999999   99999999999888  9999999999999973

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.26  E-value=1.7e-12  Score=62.57  Aligned_cols=37  Identities=32%  Similarity=0.927  Sum_probs=34.5

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCc
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCE   48 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~   48 (138)
                      |+|+|.++   ||+|+++|++...+  |.|.|++||+|..|+
T Consensus         1 D~d~C~~~---PC~ngg~C~~~~~~--y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           1 DGDQCASS---PCQNGGSCKDQLQS--YICFCLPAFEGRNCE   37 (37)
T ss_dssp             TCCGGGGC---CCCTTCEEEEETTE--EEEECCTTEESTTSC
T ss_pred             CcccCCCC---CCCCCCEEECCCCC--eEEECCCCCcCCCCC
Confidence            57899999   99999999999888  999999999999985

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.3e-12  Score=62.81  Aligned_cols=37  Identities=30%  Similarity=0.842  Sum_probs=34.5

Q ss_pred             ccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268            8 MTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      ||+|.++   ||+|+++|++..++  |.|.|++||.|..|++
T Consensus         1 Id~C~~~---PC~n~g~C~~~~~~--y~C~C~~G~~G~~Ce~   37 (39)
T d2vj3a2           1 VNECVSN---PCQNDATCLDQIGE--FQCICMPGYEGVHCEV   37 (39)
T ss_dssp             CCTTTTC---CCCSSCEEEECSSC--EEEECCTTEESSSSCE
T ss_pred             CcCCcCC---CCCCCCEEECCCCC--EEEeCCCCCccCcCee
Confidence            5889999   99999999999888  9999999999999985

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.6e-12  Score=63.34  Aligned_cols=40  Identities=35%  Similarity=0.890  Sum_probs=35.2

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      ++|+|... .+||.++++|++..++  |+|.|++||+|..|++
T Consensus         2 DideC~~~-~~pC~n~g~C~n~~g~--y~C~C~~G~~G~~Ce~   41 (42)
T d2vj3a1           2 DVDECSLG-ANPCEHAGKCINTLGS--FECQCLQGYTGPRCEI   41 (42)
T ss_dssp             CCCTTTSS-SCSSSTTCEEEECSSS--EEEECCTTEESTTSCE
T ss_pred             CCccccCC-CCCCCCCcEeECCCCC--EEeECCCCCcCCCCcC
Confidence            78889743 3399999999999999  9999999999999974

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8.1e-12  Score=60.88  Aligned_cols=38  Identities=26%  Similarity=0.670  Sum_probs=35.0

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCC
Q 044268           50 SGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        50 ~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~   89 (138)
                      ++++|.++||.++++|++.. ++|.|.|++||+|. .|++
T Consensus         2 d~d~C~~~PC~ngg~C~~~~-~~y~C~C~~g~~G~-~Cei   39 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKDDI-NSYECWCPFGFEGK-NCEL   39 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEET-TEEEEECCTTCCST-TSCC
T ss_pred             ccccCCCCCCCCCcEEEcCC-CCEEEECCCCCCCC-CCCC
Confidence            57899999999999999988 59999999999999 9984

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.7e-11  Score=58.30  Aligned_cols=35  Identities=31%  Similarity=1.064  Sum_probs=32.3

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCc
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCE   48 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~   48 (138)
                      |+|.++   ||+|+++|++...+  |.|.|++||.|..||
T Consensus         1 d~C~~~---PC~ngg~C~~~~~~--y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASS---PCLHNGRCLDKINE--FQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTC---CSTTTCEEEECSSC--EEEECCTTEESSSSC
T ss_pred             CCCCCC---CCCCCcEEECCCCC--eEEECCCCCCCCCcC
Confidence            578888   99999999998888  999999999999985

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.9e-12  Score=60.65  Aligned_cols=37  Identities=32%  Similarity=0.922  Sum_probs=33.7

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccC
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS   50 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~   50 (138)
                      |+|.++   ||+|+++|++...+  |.|.|++||+|..|++.
T Consensus         1 D~C~~~---PC~ngg~C~~~~~~--y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1           1 DQCETS---PCQNQGKCKDGLGE--YTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             CTTTTC---CCCSSCEECCCSSS--CCEECCTTEETTTTCEE
T ss_pred             CcCCCC---CCCCCcEEECCCCC--EEEECCCCCCcCcCeEc
Confidence            578888   99999999998888  99999999999999853

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.9e-11  Score=59.47  Aligned_cols=37  Identities=27%  Similarity=0.618  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCC
Q 044268           51 GTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        51 ~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~   89 (138)
                      +++|.++||.|+|+|++.. ++|.|.|++||+|. .|++
T Consensus         1 Id~C~~~PC~n~g~C~~~~-~~y~C~C~~G~~G~-~Ce~   37 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQI-GEFQCICMPGYEGV-HCEV   37 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECS-SCEEEECCTTEESS-SSCE
T ss_pred             CcCCcCCCCCCCCEEECCC-CCEEEeCCCCCccC-cCee
Confidence            4789999999999999987 59999999999999 9985

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.11  E-value=1.3e-11  Score=59.36  Aligned_cols=37  Identities=24%  Similarity=0.663  Sum_probs=33.6

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCC
Q 044268           50 SGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCS   88 (138)
Q Consensus        50 ~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~   88 (138)
                      ++++|.++||.++++|++.. +.|.|.|++||+|. .||
T Consensus         1 D~d~C~~~PC~ngg~C~~~~-~~y~C~C~~g~~G~-~Ce   37 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQL-QSYICFCLPAFEGR-NCE   37 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEET-TEEEEECCTTEEST-TSC
T ss_pred             CcccCCCCCCCCCCEEECCC-CCeEEECCCCCcCC-CCC
Confidence            46789999999999999988 59999999999999 886

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=8e-11  Score=57.89  Aligned_cols=39  Identities=33%  Similarity=0.906  Sum_probs=31.1

Q ss_pred             ccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCC
Q 044268           11 CDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGT   52 (138)
Q Consensus        11 C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~   52 (138)
                      |.++   ||+|+|+|++.....+|.|.|++||.|..|+++++
T Consensus         1 C~~n---PC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~~   39 (41)
T d1tpga1           1 CSEP---RCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR   39 (41)
T ss_dssp             CSSC---CSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSS
T ss_pred             CcCC---CCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCcC
Confidence            4556   99999999976433349999999999999987654

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.5e-11  Score=58.48  Aligned_cols=38  Identities=24%  Similarity=0.580  Sum_probs=33.8

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCCC
Q 044268           52 TPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      ++|.++||.|+|+|++.. +.|.|.|++||+|. .|++..
T Consensus         1 D~C~~~PC~ngg~C~~~~-~~y~C~C~~G~~G~-~Cei~~   38 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGL-GEYTCTCLEGFEGK-NCELFT   38 (39)
T ss_dssp             CTTTTCCCCSSCEECCCS-SSCCEECCTTEETT-TTCEES
T ss_pred             CcCCCCCCCCCcEEECCC-CCEEEECCCCCCcC-cCeEcc
Confidence            468889999999999987 59999999999999 998643

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.8e-11  Score=59.64  Aligned_cols=37  Identities=38%  Similarity=0.988  Sum_probs=33.4

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccC
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS   50 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~   50 (138)
                      +.|.++   ||+|+++|++..++  |.|.|++||.|..|+..
T Consensus         2 ~~C~~~---pC~ngg~C~~~~~~--~~C~C~~g~~G~~Ce~~   38 (39)
T d1g1ta2           2 AACTNT---SCSGHGECVETINN--YTCKCDPGFSGLKCEQI   38 (39)
T ss_dssp             CCCCTT---GGGGSEEEEEETTE--EEEEECTTEESTTSCEE
T ss_pred             CcccCC---cCCCCcEEECCCCC--EEEeCCCCCcCcCcCcc
Confidence            568888   99999999999888  99999999999999753

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=9.9e-11  Score=55.56  Aligned_cols=35  Identities=29%  Similarity=0.819  Sum_probs=31.9

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCC
Q 044268           52 TPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCS   88 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~   88 (138)
                      ++|.++||.|+|+|++.. ++|.|.|++||+|. .||
T Consensus         1 d~C~~~PC~ngg~C~~~~-~~y~C~C~~g~~G~-~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKI-NEFQCECPTGFTGH-LCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECS-SCEEEECCTTEESS-SSC
T ss_pred             CCCCCCCCCCCcEEECCC-CCeEEECCCCCCCC-CcC
Confidence            468899999999999987 59999999999999 886

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.7e-10  Score=57.06  Aligned_cols=38  Identities=21%  Similarity=0.600  Sum_probs=33.6

Q ss_pred             CCCCCC--CCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCC
Q 044268           50 SGTPCG--QIFCFHEAQCLALSQVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        50 ~~~~C~--~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~   89 (138)
                      ++++|.  ++||.++++|++.. ++|.|.|++||+|. .|++
T Consensus         2 DideC~~~~~pC~n~g~C~n~~-g~y~C~C~~G~~G~-~Ce~   41 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTL-GSFECQCLQGYTGP-RCEI   41 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECS-SSEEEECCTTEEST-TSCE
T ss_pred             CCccccCCCCCCCCCcEeECCC-CCEEeECCCCCcCC-CCcC
Confidence            567776  58999999999998 69999999999999 9974

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.1e-10  Score=57.09  Aligned_cols=36  Identities=33%  Similarity=0.908  Sum_probs=32.8

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      +.|.++   ||.|+++|++..++  |.|.|++||.|..|+.
T Consensus         2 ~~C~~~---pC~ngg~C~~~~~~--y~C~C~~g~~G~~Ce~   37 (40)
T d1g1sa2           2 ASCQDM---SCSKQGECLETIGN--YTCSCYPGFYGPECEY   37 (40)
T ss_dssp             CCCCTT---GGGGSEEEEECSSS--EEEEECTTEESTTSCE
T ss_pred             CcccCC---cCCCCcEEECCCCC--eEEeCCCCccCCCCCC
Confidence            467888   99999999999988  9999999999999974

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.9e-11  Score=57.08  Aligned_cols=37  Identities=22%  Similarity=0.663  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCC
Q 044268           52 TPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      +.|.++||.|+|+|++.. +.|.|.|++||+|. .|+..
T Consensus         2 ~~C~~~pC~ngg~C~~~~-~~~~C~C~~g~~G~-~Ce~~   38 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETI-NNYTCKCDPGFSGL-KCEQI   38 (39)
T ss_dssp             CCCCTTGGGGSEEEEEET-TEEEEEECTTEEST-TSCEE
T ss_pred             CcccCCcCCCCcEEECCC-CCEEEeCCCCCcCc-CcCcc
Confidence            468889999999999987 59999999999999 99864

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.2e-10  Score=58.01  Aligned_cols=40  Identities=25%  Similarity=0.781  Sum_probs=35.3

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccCCC
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHSGT   52 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~~~   52 (138)
                      ..++|.++   ||.| |+|++..++  |.|.|++||.|.+|+.++.
T Consensus         7 ~~~~C~~~---PC~n-G~C~~~~~~--y~C~C~~G~~G~~Ce~~I~   46 (48)
T d1autl1           7 LEHPCASL---CCGH-GTCIDGIGS--FSCDCRSGWEGRFCQREVS   46 (48)
T ss_dssp             SCCSSSST---TTTS-EEECCCSSC--CCEEECTTEESTTSCEECC
T ss_pred             CCCcccCC---CCCC-CEEECCCCC--CeEeCCCCCcCCCcccccC
Confidence            35889999   9998 799999888  9999999999999987653

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.92  E-value=3.7e-10  Score=55.72  Aligned_cols=37  Identities=32%  Similarity=0.866  Sum_probs=32.3

Q ss_pred             ccCccCCCCccCCCCCEEeec-CCCcceEeeCCC-CCcCCCCcc
Q 044268            8 MTMCDGTNEFWCEHGGKCEEI-VQGEMYDCKCPA-GYAGEHCEH   49 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~~-~~~~~~~C~C~~-g~~g~~C~~   49 (138)
                      +|+|.++   ||+|+|+|++. ...  |.|.|+. ||.|..|++
T Consensus         2 id~C~~n---PC~ngG~C~~~~~~~--y~C~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           2 VNPCCYY---PCQHQGICVRFGLDR--YQCDCTRTGYSGPNCTI   40 (42)
T ss_dssp             CCGGGGC---CCCTTCEEEEETTTE--EEEECTTSSEETTTTCE
T ss_pred             CccCcCC---CCCCCCEeeeCCCCC--EEEECCCCCcCCcCcCc
Confidence            6889999   99999999875 455  9999986 899999974

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.5e-09  Score=53.21  Aligned_cols=38  Identities=26%  Similarity=0.728  Sum_probs=31.9

Q ss_pred             CCCCCCCCCCeeeeCC-CCCeeeeCCCCCCCCCCCCCCCC
Q 044268           54 CGQIFCFHEAQCLALS-QVHNACDCPPDWKGSADCSLPTL   92 (138)
Q Consensus        54 C~~~~C~~~g~C~~~~-~~~~~C~C~~g~~g~~~C~~~~~   92 (138)
                      |.++||.|+|+|+... ...|.|.|++||+|. .|++.+.
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~-~Ce~~~~   39 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGK-SCEIDTR   39 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSS-SCCBCSS
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCC-CcCcCcC
Confidence            5678999999999753 247999999999999 9997654

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.88  E-value=2.9e-10  Score=56.11  Aligned_cols=39  Identities=28%  Similarity=0.826  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCCCCeeeeCCCCCeeeeCCC-CCCCCCCCCCC
Q 044268           51 GTPCGQIFCFHEAQCLALSQVHNACDCPP-DWKGSADCSLP   90 (138)
Q Consensus        51 ~~~C~~~~C~~~g~C~~~~~~~~~C~C~~-g~~g~~~C~~~   90 (138)
                      +++|.++||.|+|+|+....+.|.|.|+. ||+|. .|+++
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~-~Ce~p   41 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGP-NCTIP   41 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETT-TTCEE
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCc-CcCcC
Confidence            57888999999999987543589999986 89999 99864

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.1e-10  Score=55.40  Aligned_cols=37  Identities=24%  Similarity=0.757  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCC
Q 044268           52 TPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      +.|.++||.|+|+|+... +.|.|.|++||+|. .|+..
T Consensus         2 ~~C~~~pC~ngg~C~~~~-~~y~C~C~~g~~G~-~Ce~~   38 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETI-GNYTCSCYPGFYGP-ECEYV   38 (40)
T ss_dssp             CCCCTTGGGGSEEEEECS-SSEEEEECTTEEST-TSCEE
T ss_pred             CcccCCcCCCCcEEECCC-CCeEEeCCCCccCC-CCCCC
Confidence            468889999999999988 59999999999999 99864

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=6.5e-10  Score=54.52  Aligned_cols=38  Identities=26%  Similarity=0.790  Sum_probs=31.6

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeeeeCC-CCCCCCCCCCCC
Q 044268           52 TPCGQIFCFHEAQCLALSQVHNACDCP-PDWKGSADCSLP   90 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~~~~~~~~C~C~-~g~~g~~~C~~~   90 (138)
                      ++|.++||.|+|+|+....+.|.|.|+ +||+|. .|+.+
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~-~Ce~p   40 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGE-NCTTP   40 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETT-TTCEE
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCc-CcCcC
Confidence            678889999999998753358999997 599999 99864

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.7e-09  Score=52.97  Aligned_cols=36  Identities=31%  Similarity=0.898  Sum_probs=31.0

Q ss_pred             cCccCCCCccCCCCCEEeec-CCCcceEeeCC-CCCcCCCCcc
Q 044268            9 TMCDGTNEFWCEHGGKCEEI-VQGEMYDCKCP-AGYAGEHCEH   49 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~-~~~~~~~C~C~-~g~~g~~C~~   49 (138)
                      |+|.++   ||+|+|+|++. ..+  |+|.|+ +||.|..|+.
T Consensus         2 d~C~~~---PC~ngG~C~~~~~~~--y~C~C~~~gy~G~~Ce~   39 (41)
T d1cvua2           2 NPCCSN---PCQNRGECMSTGFDQ--YKCDCTRTGFYGENCTT   39 (41)
T ss_dssp             CTTTTC---CCCTTCEEEEEETTE--EEEECTTSSEETTTTCE
T ss_pred             CcCcCC---CCCCCCEEEECCCCC--EEEeCcCCCcCCcCcCc
Confidence            678888   99999999875 455  999997 6999999974

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.2e-09  Score=55.16  Aligned_cols=40  Identities=28%  Similarity=0.710  Sum_probs=34.7

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCCCC
Q 044268           50 SGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPTL   92 (138)
Q Consensus        50 ~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~~~   92 (138)
                      ..++|.++||.+ |+|++.. ++|.|.|++||+|. .|+..+.
T Consensus         7 ~~~~C~~~PC~n-G~C~~~~-~~y~C~C~~G~~G~-~Ce~~I~   46 (48)
T d1autl1           7 LEHPCASLCCGH-GTCIDGI-GSFSCDCRSGWEGR-FCQREVS   46 (48)
T ss_dssp             SCCSSSSTTTTS-EEECCCS-SCCCEEECTTEEST-TSCEECC
T ss_pred             CCCcccCCCCCC-CEEECCC-CCCeEeCCCCCcCC-CcccccC
Confidence            357899999998 6999887 59999999999999 9997654

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.5e-09  Score=57.48  Aligned_cols=46  Identities=28%  Similarity=0.551  Sum_probs=36.2

Q ss_pred             ccCccCCCCccCCCCCEEee-----cCCCcceEeeCCCCCcCCCCccCCCCCCCCC
Q 044268            8 MTMCDGTNEFWCEHGGKCEE-----IVQGEMYDCKCPAGYAGEHCEHSGTPCGQIF   58 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~-----~~~~~~~~C~C~~g~~g~~C~~~~~~C~~~~   58 (138)
                      .++|.++   ||.|+|+|..     ....  |.|.|++||+|..|+..+..+...+
T Consensus         6 c~ec~~~---~C~NgG~C~~~~~~~~~~~--y~C~C~~gy~G~~Ce~~~~~~~~~~   56 (63)
T d1haea_           6 CAEKEKT---FCVNGGECFMVKDLSNPSR--YLCKCQPGFTGARCTENVPMKVQNQ   56 (63)
T ss_dssp             CCHHHHT---TSCTTCEEEEEESSSSSCC--EEEECCTTEESTTSCEECCSSCTTC
T ss_pred             CCCCcCC---cCCCCCEEeecccccCCCC--EEeECCCCCCCCCcCCCCCccccCC
Confidence            4667788   9999999963     3445  9999999999999997766555443

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=3.1e-08  Score=51.11  Aligned_cols=39  Identities=31%  Similarity=0.826  Sum_probs=30.3

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCccC
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEHS   50 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~~   50 (138)
                      ++|.++   ||.|+|+|.......+|.|.|++||+|..|+..
T Consensus         7 ~~c~~~---~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~~   45 (53)
T d3egfa_           7 PSSYDG---YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR   45 (53)
T ss_dssp             CTTSSC---CSCSSCEEEEESSSSCEEEECCTTCCSSSSCCC
T ss_pred             CCCCCC---CCCCCcEeeccCCCCCeEeECCCCCcCCCCccC
Confidence            455566   999999998654433499999999999999853

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.3e-08  Score=51.42  Aligned_cols=38  Identities=34%  Similarity=0.849  Sum_probs=30.2

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      ++|..+   ||.|+|+|+......+|+|.|+.+|+|..|+.
T Consensus         5 ~~c~~~---~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~   42 (48)
T d1nqlb_           5 PLSHDG---YCLHDGVCMYIEALDKYACNCVVGYIGERCQY   42 (48)
T ss_dssp             CSTTCC---EECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CCCCCC---CCCCCcEEeeeCCCCCeEEeCCCCcccCCCCc
Confidence            456667   99999999865443349999999999999974

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=2.3e-07  Score=47.71  Aligned_cols=41  Identities=17%  Similarity=0.547  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCCCeeeeCC-CCCeeeeCCCCCCCCCCCCCCCCC
Q 044268           52 TPCGQIFCFHEAQCLALS-QVHNACDCPPDWKGSADCSLPTLS   93 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~~~-~~~~~C~C~~g~~g~~~C~~~~~~   93 (138)
                      .+|..+||.|+|+|.... ...|.|.|++||+|. +|+.....
T Consensus         7 ~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~-~Ce~~~l~   48 (53)
T d3egfa_           7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD-RCQTRDLR   48 (53)
T ss_dssp             CTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSS-SSCCCSCC
T ss_pred             CCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCC-CCccCCcc
Confidence            456678999999998532 148999999999999 99975443

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.2e-08  Score=52.98  Aligned_cols=39  Identities=21%  Similarity=0.641  Sum_probs=31.3

Q ss_pred             CCCCCCCCCCCCeeee-----CCCCCeeeeCCCCCCCCCCCCCCCC
Q 044268           52 TPCGQIFCFHEAQCLA-----LSQVHNACDCPPDWKGSADCSLPTL   92 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~-----~~~~~~~C~C~~g~~g~~~C~~~~~   92 (138)
                      ++|..+||.|+|+|..     .. +.|.|.|++||+|. +|+....
T Consensus         7 ~ec~~~~C~NgG~C~~~~~~~~~-~~y~C~C~~gy~G~-~Ce~~~~   50 (63)
T d1haea_           7 AEKEKTFCVNGGECFMVKDLSNP-SRYLCKCQPGFTGA-RCTENVP   50 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSS-CCEEEECCTTEEST-TSCEECC
T ss_pred             CCCcCCcCCCCCEEeecccccCC-CCEEeECCCCCCCC-CcCCCCC
Confidence            4566789999999953     33 48999999999999 9986543

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=9.8e-08  Score=46.99  Aligned_cols=38  Identities=32%  Similarity=0.786  Sum_probs=31.1

Q ss_pred             CCCCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc--CCCC
Q 044268            4 CDEEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA--GEHC   47 (138)
Q Consensus         4 C~~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~--g~~C   47 (138)
                      | .++|+|...   ++..++.|++++++  |.|.|++||.  |..|
T Consensus         2 C-vDidEC~~~---~~~~~~~C~Nt~Gs--y~C~C~~Gy~~~g~~C   41 (43)
T d1emoa1           2 A-VDMDECKEP---DVCKHGQCINTDGS--YRCECPFGYILAGNEC   41 (43)
T ss_dssp             C-CCCCSSSST---TSCSSSCCCCCSSC--CCCCCCTTEEESSSCE
T ss_pred             C-cceeccCCc---CCCCCCEeECCCCC--eEeECCCCcccCCCcc
Confidence            5 489999877   55567899999999  9999999997  4444

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.9e-07  Score=46.05  Aligned_cols=36  Identities=25%  Similarity=0.721  Sum_probs=29.5

Q ss_pred             CCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcCC
Q 044268            6 EEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAGE   45 (138)
Q Consensus         6 ~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g~   45 (138)
                      +|+|+|... +.+|. ++.|+++.++  |.|.|++||.+.
T Consensus         1 TDidEC~~~-~~~C~-~~~C~Nt~Gs--y~C~C~~Gy~~~   36 (44)
T d1lmja1           1 TDIDECRIS-PDLCG-RGQCVNTPGD--FECKCDEGYESG   36 (44)
T ss_dssp             CCCCTTTTC-SSTTT-TSCEEEETTE--EEECCCSSEEEC
T ss_pred             CcccccCCC-CCCCC-CCEeEcCCCC--eEEeCCCCCccC
Confidence            478999876 44676 4789999999  999999999754

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.1e-07  Score=46.85  Aligned_cols=39  Identities=21%  Similarity=0.631  Sum_probs=31.4

Q ss_pred             CCCCCCCCCCCCeeeeCCC-CCeeeeCCCCCCCCCCCCCCC
Q 044268           52 TPCGQIFCFHEAQCLALSQ-VHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        52 ~~C~~~~C~~~g~C~~~~~-~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      .+|..+||.|+|+|..... ..+.|.|+.||+|. +|+...
T Consensus         5 ~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~-~Ce~~d   44 (48)
T d1nqlb_           5 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGE-RCQYRD   44 (48)
T ss_dssp             CSTTCCEECTTCEEEEETTTTEEEEEECTTEEST-TSCEEC
T ss_pred             CCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccC-CCCcCc
Confidence            4566789999999986422 47999999999999 998653

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.5e-07  Score=46.27  Aligned_cols=33  Identities=30%  Similarity=0.902  Sum_probs=27.3

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      |+|+|... +..|.+ +.|++++++  |.|.|++||.
T Consensus         2 DinEC~~~-~~~c~~-~~C~Nt~Gs--y~C~C~~Gy~   34 (43)
T d1uzka2           2 DIDECQEL-PGLCQG-GKCINTFGS--FQCRCPTGYY   34 (43)
T ss_dssp             ECCHHHHC-GGGGBT-SEEEECSSC--EEEECCTTCC
T ss_pred             CcccccCC-CCCcCC-CEEECCCCC--eEeECCCCCe
Confidence            68889765 335764 699999999  9999999997

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.3e-07  Score=44.81  Aligned_cols=34  Identities=29%  Similarity=0.861  Sum_probs=27.4

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcC
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAG   44 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g   44 (138)
                      |+|+|... +..|. ++.|++++++  |.|.|++||..
T Consensus         1 DidEC~~~-~~~C~-~~~C~Nt~Gs--y~C~C~~Gy~l   34 (42)
T d1lmja2           1 DIDECQRD-PLLCR-GGVCHNTEGS--YRCECPPGHQL   34 (42)
T ss_dssp             ECCHHHHC-SSTTT-TSEEEEETTE--EEEESCTTSCC
T ss_pred             CccccCCC-CCCCC-CCEeECCCCC--eEEeCCCCCeE
Confidence            46788766 34575 5799999999  99999999973

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.1e-06  Score=43.11  Aligned_cols=33  Identities=24%  Similarity=0.727  Sum_probs=26.4

Q ss_pred             CCccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc
Q 044268            6 EEMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus         6 ~~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      +++|+|+.. . .| -++.|++++++  |.|.|++||.
T Consensus         1 TDidEC~~~-~-~~-c~~~C~Nt~G~--y~C~C~~Gy~   33 (43)
T d1uzka1           1 TDVNECLDP-T-TC-ISGNCVNTPGS--YICDCPPDFE   33 (43)
T ss_dssp             CCCCGGGST-T-SS-BTSEEEEETTE--EEEECCTTCE
T ss_pred             CCccccCCC-C-cC-cCCEeECCCCC--EEEecCCCCE
Confidence            478999765 1 33 35799999999  9999999996

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.4e-06  Score=43.22  Aligned_cols=35  Identities=29%  Similarity=0.630  Sum_probs=26.1

Q ss_pred             CCccCccCCCCccCC-C-----CCEEeecCCCcceEeeCCCCCc
Q 044268            6 EEMTMCDGTNEFWCE-H-----GGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus         6 ~~~~~C~~~~~~pC~-~-----~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      +|+|+|.... ..|. +     ...|++++++  |.|.|++||.
T Consensus         2 vDidEC~~~~-~~c~~~~~~~c~~~C~Nt~Gs--Y~C~C~~Gy~   42 (53)
T d1apqa_           2 VDLDECASRS-KSGEEDPQPQCQHLCHNYVGG--YFCSCRPGYE   42 (53)
T ss_dssp             CSCCTTTCST-TTCCCSSSCTTSSEEEEETTE--EEEECSTTCE
T ss_pred             eecccccCCC-CCcccCCCCCccCEeEcCCCC--eEeECCCCCe
Confidence            4788887652 2232 2     2489999999  9999999997

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.9e-06  Score=42.18  Aligned_cols=35  Identities=17%  Similarity=0.372  Sum_probs=29.0

Q ss_pred             cCCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           49 HSGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        49 ~~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      +++++|...++...+.|+++. |+|.|.|++||.+.
T Consensus         3 vDidEC~~~~~~~~~~C~Nt~-Gsy~C~C~~Gy~~~   37 (43)
T d1emoa1           3 VDMDECKEPDVCKHGQCINTD-GSYRCECPFGYILA   37 (43)
T ss_dssp             CCCCSSSSTTSCSSSCCCCCS-SCCCCCCCTTEEES
T ss_pred             cceeccCCcCCCCCCEeECCC-CCeEeECCCCcccC
Confidence            578899876666677999999 79999999999754

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=9.1e-06  Score=40.16  Aligned_cols=30  Identities=40%  Similarity=1.025  Sum_probs=17.8

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCc
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCE   48 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~   48 (138)
                      +|.| |.|.-......+.|.|++||.|..|+
T Consensus        13 yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe   42 (46)
T d1k36a_          13 YCLH-GQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             SCSS-EEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             cCcC-CEEEEeCCCCccEeECCCCceecCce
Confidence            6776 45543222223777777777777775

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=5.5e-06  Score=39.68  Aligned_cols=32  Identities=22%  Similarity=0.698  Sum_probs=25.7

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCcC
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYAG   44 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~g   44 (138)
                      |+|+|..+  ++|.  ..|++++++  |.|.|++||..
T Consensus         1 DidEC~~~--~~C~--~~C~N~~Gs--y~C~C~~Gy~l   32 (40)
T d1dx5i3           1 DIDECENG--GFCS--GVCHNLPGT--FECICGPDSAL   32 (40)
T ss_dssp             ECCHHHHC--SSCS--SEEEECSSS--EEEEECSSSSC
T ss_pred             CccccCCC--cCcc--CEeeCCCCC--eEeECCCCCee
Confidence            46777543  3786  499999999  99999999974

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.1e-05  Score=36.21  Aligned_cols=34  Identities=32%  Similarity=0.785  Sum_probs=25.8

Q ss_pred             cCCCCCEEeecCC-CcceEeeCCCCCcCCCCccCC
Q 044268           18 WCEHGGKCEEIVQ-GEMYDCKCPAGYAGEHCEHSG   51 (138)
Q Consensus        18 pC~~~~~C~~~~~-~~~~~C~C~~g~~g~~C~~~~   51 (138)
                      .|.|+|+|+.-.- +.-.+|.||.+|.|.+|+++.
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiDt   37 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   37 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEES
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCceeEEecc
Confidence            4889999986421 112689999999999998764

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.4e-05  Score=40.21  Aligned_cols=35  Identities=14%  Similarity=0.503  Sum_probs=27.7

Q ss_pred             CCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCCC
Q 044268           56 QIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        56 ~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      .++|.||+.|.......+.|.|+.||+|. +|+...
T Consensus        13 ~~yC~nGgcc~~~~~~~~~C~C~~gy~G~-rCe~~~   47 (50)
T d1ioxa_          13 KHYCIKGRCRFVVAEQTPSCVCDEGYIGA-RCERVD   47 (50)
T ss_dssp             TTSCTTCCEEEETTTTEEEECCCTTEETT-TTCEEC
T ss_pred             CCCccCCeEEEeCCCCCcEeECCCCCeeC-CCccce
Confidence            36789999886554457899999999999 998643

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.6e-05  Score=38.34  Aligned_cols=34  Identities=24%  Similarity=0.542  Sum_probs=23.7

Q ss_pred             ccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc
Q 044268            8 MTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      ||+|.......+.-...|++++++  |.|.|++||.
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gs--y~C~C~~Gy~   34 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGG--FYCSCRAGYV   34 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTE--EEEECCTTEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCC--eEEECCCCCe
Confidence            466655411122224599999999  9999999996

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.4e-05  Score=39.09  Aligned_cols=33  Identities=18%  Similarity=0.474  Sum_probs=26.5

Q ss_pred             CCCCCCC--CCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           50 SGTPCGQ--IFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        50 ~~~~C~~--~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      ++++|..  .+|. .+.|+++. |+|.|.|++||.+.
T Consensus         2 DidEC~~~~~~C~-~~~C~Nt~-Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           2 DIDECRISPDLCG-RGQCVNTP-GDFECKCDEGYESG   36 (44)
T ss_dssp             CCCTTTTCSSTTT-TSCEEEET-TEEEECCCSSEEEC
T ss_pred             cccccCCCCCCCC-CCEeEcCC-CCeEEeCCCCCccC
Confidence            5678864  4565 46899999 79999999999876

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=2e-05  Score=38.01  Aligned_cols=30  Identities=27%  Similarity=0.845  Sum_probs=23.8

Q ss_pred             ccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc
Q 044268            8 MTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      +|+|..  +++|.+  .|.++.++  |.|.|++||.
T Consensus         1 idEC~~--~~~C~~--~C~n~~Gs--y~C~C~~Gy~   30 (41)
T d1i0ua2           1 IDECQD--PDTCSQ--LCVNLEGG--YKCQCEEGFQ   30 (41)
T ss_dssp             CCTTTT--TTSCSS--CEECSSSC--CEECCCTTEE
T ss_pred             CccCCC--CCCCCC--EeECCCCC--EEeECCCCCe
Confidence            466753  237864  89999999  9999999997

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=2.3e-05  Score=38.59  Aligned_cols=20  Identities=35%  Similarity=0.949  Sum_probs=18.1

Q ss_pred             CCEEeecCCCcceEeeCCCCCc
Q 044268           22 GGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus        22 ~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      ...|++++++  |.|.|++||.
T Consensus        15 ~~~C~Nt~gs--y~C~C~~Gy~   34 (45)
T d1nt0a3          15 DHYCHNYLGG--YYCSCRVGYI   34 (45)
T ss_dssp             SSEEEEETTE--EEEECCTTEE
T ss_pred             CCEeecCCCC--EEEeCCCCCE
Confidence            3499999999  9999999996

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=1.3e-05  Score=38.41  Aligned_cols=26  Identities=31%  Similarity=0.928  Sum_probs=23.3

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCC
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGE   45 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~   45 (138)
                      .|..++.|++++++  |.|.|.+||.|.
T Consensus         8 ~C~~~A~C~Nt~Gs--y~C~C~~Gy~Gd   33 (40)
T d1gl4a2           8 QCSVHAECRDYATG--FCCRCVANYTGN   33 (40)
T ss_dssp             GSCTTEEEEECSSC--EEEEECTTEEEC
T ss_pred             CCCCCCEeecCCCC--eEeECCCCCcCC
Confidence            68888999999999  999999999853

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=3.5e-05  Score=38.69  Aligned_cols=31  Identities=29%  Similarity=0.711  Sum_probs=25.5

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      .|.||+.|...... .+.|.|+.||.|..|+.
T Consensus        15 yC~nGgcc~~~~~~-~~~C~C~~gy~G~rCe~   45 (50)
T d1ioxa_          15 YCIKGRCRFVVAEQ-TPSCVCDEGYIGARCER   45 (50)
T ss_dssp             SCTTCCEEEETTTT-EEEECCCTTEETTTTCE
T ss_pred             CccCCeEEEeCCCC-CcEeECCCCCeeCCCcc
Confidence            79999999654433 38999999999999974

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=3e-05  Score=38.72  Aligned_cols=31  Identities=35%  Similarity=0.792  Sum_probs=19.6

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCcCCCCcc
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYAGEHCEH   49 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~g~~C~~   49 (138)
                      .|.||+.|...... .+.|.|+.||.|..|+.
T Consensus        14 yClnGgcc~~~~~~-~~~C~C~~gy~G~RCe~   44 (49)
T d1moxc_          14 FCFHGTCRFLVQED-KPACVCHSGYVGARCEH   44 (49)
T ss_dssp             SSTTEEEEEETTTT-EEEEEECTTEESTTSCE
T ss_pred             EeeCCeEEecCCCC-CcEeECCCCCEecCCcc
Confidence            57777666433322 27777777777777763

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.3e-05  Score=39.21  Aligned_cols=35  Identities=26%  Similarity=0.647  Sum_probs=27.8

Q ss_pred             CCCCCCCCeeeeCCCCCeeeeCCCCCCCCCCCCCCC
Q 044268           56 QIFCFHEAQCLALSQVHNACDCPPDWKGSADCSLPT   91 (138)
Q Consensus        56 ~~~C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~~~~   91 (138)
                      .+.|.||+.|.......+.|.|+.||+|. +||...
T Consensus        12 ~~yClnGgcc~~~~~~~~~C~C~~gy~G~-RCe~~~   46 (49)
T d1moxc_          12 TQFCFHGTCRFLVQEDKPACVCHSGYVGA-RCEHAD   46 (49)
T ss_dssp             SCSSTTEEEEEETTTTEEEEEECTTEEST-TSCEEC
T ss_pred             CCEeeCCeEEecCCCCCcEeECCCCCEec-CCcccc
Confidence            36799998885544358899999999999 998643

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=6e-05  Score=37.08  Aligned_cols=33  Identities=27%  Similarity=0.759  Sum_probs=25.1

Q ss_pred             CCCCCCCCeeee-CCCCCeeeeCCCCCCCCCCCCCC
Q 044268           56 QIFCFHEAQCLA-LSQVHNACDCPPDWKGSADCSLP   90 (138)
Q Consensus        56 ~~~C~~~g~C~~-~~~~~~~C~C~~g~~g~~~C~~~   90 (138)
                      .++|.| |.|.. .....+.|.|++||+|. +|+..
T Consensus        11 ~~yC~n-G~C~~~~~~~~~~C~C~~gY~G~-RCe~~   44 (46)
T d1k36a_          11 NGYCLH-GQCIYLVDMSQNYCRCEVGYTGV-RCEHF   44 (46)
T ss_dssp             CSSCSS-EEEEEETTTTEEEEEECTTCSST-TSCCC
T ss_pred             CCcCcC-CEEEEeCCCCccEeECCCCceec-Cceee
Confidence            478998 56753 22247999999999999 99864

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=6.3e-05  Score=36.31  Aligned_cols=22  Identities=41%  Similarity=1.080  Sum_probs=20.0

Q ss_pred             cCCCCCEEeecCCCcceEeeCCCCCc
Q 044268           18 WCEHGGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      +|.+  .|++++++  |.|.|+.||.
T Consensus        10 ~C~~--~C~n~~Gs--y~C~C~~Gy~   31 (42)
T d1nzia2          10 PCSH--FCNNFIGG--YFCSCPPEYF   31 (42)
T ss_dssp             CSSS--EEEEETTE--EEEECCTTCE
T ss_pred             CCCC--EeecCCCC--EEEeCCCCCE
Confidence            6865  99999999  9999999996

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=6.1e-05  Score=35.97  Aligned_cols=31  Identities=32%  Similarity=0.911  Sum_probs=24.9

Q ss_pred             ccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc
Q 044268            8 MTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus         8 ~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      +|+|+.. ...|.+  .|++++++  |.|.|++||.
T Consensus         2 ~neC~~~-nggC~h--~C~n~~g~--~~C~C~~Gy~   32 (40)
T d3bpse1           2 TNECLDN-NGGCSH--VCNDLKIG--YECLCPDGFQ   32 (40)
T ss_dssp             SCGGGTG-GGGCSS--EEEECSSS--EEEECCTTCC
T ss_pred             cccCCCC-CCCCcC--EEEcCCCC--EEEECCCCCE
Confidence            4677655 335765  99999999  9999999996

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=5.1e-05  Score=36.89  Aligned_cols=34  Identities=24%  Similarity=0.526  Sum_probs=24.8

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           50 SGTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        50 ~~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      ++++|......-.+.|+++. |+|.|.|++||...
T Consensus         2 DidEC~~~~~~c~~~C~Nt~-G~y~C~C~~Gy~l~   35 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTP-GSYICDCPPDFELN   35 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEET-TEEEEECCTTCEEC
T ss_pred             CccccCCCCcCcCCEeECCC-CCEEEecCCCCEEC
Confidence            46777643322346999999 69999999999654

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00011  Score=33.70  Aligned_cols=34  Identities=21%  Similarity=0.677  Sum_probs=26.4

Q ss_pred             CCCCCCeeeeCC--CCCeeeeCCCCCCCCCCCCCCCC
Q 044268           58 FCFHEAQCLALS--QVHNACDCPPDWKGSADCSLPTL   92 (138)
Q Consensus        58 ~C~~~g~C~~~~--~~~~~C~C~~g~~g~~~C~~~~~   92 (138)
                      .|.|+|+|+...  ..-.+|.||.+|.|. .||+...
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~-HCEiDt~   38 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQ-HCEIDKS   38 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEEST-TSCEESS
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCce-eEEeccc
Confidence            378999998652  124689999999999 9987543

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=3.9e-05  Score=37.10  Aligned_cols=32  Identities=25%  Similarity=0.613  Sum_probs=24.0

Q ss_pred             CCCCC--CCCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           51 GTPCG--QIFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        51 ~~~C~--~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      +++|.  +..|. ++.|+++. |+|.|.|++||...
T Consensus         2 idEC~~~~~~C~-~~~C~Nt~-Gsy~C~C~~Gy~l~   35 (42)
T d1lmja2           2 IDECQRDPLLCR-GGVCHNTE-GSYRCECPPGHQLS   35 (42)
T ss_dssp             CCHHHHCSSTTT-TSEEEEET-TEEEEESCTTSCCC
T ss_pred             ccccCCCCCCCC-CCEeECCC-CCeEEeCCCCCeEC
Confidence            34554  24464 46999999 79999999999855

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=6.4e-05  Score=35.82  Aligned_cols=25  Identities=32%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             CCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           57 IFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        57 ~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      .+|.  ..|+++. |+|.|.|++||...
T Consensus         9 ~~C~--~~C~N~~-Gsy~C~C~~Gy~l~   33 (40)
T d1dx5i3           9 GFCS--GVCHNLP-GTFECICGPDSALA   33 (40)
T ss_dssp             SSCS--SEEEECS-SSEEEEECSSSSCE
T ss_pred             cCcc--CEeeCCC-CCeEeECCCCCeeC
Confidence            5675  3899999 79999999999875

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=6e-05  Score=35.98  Aligned_cols=27  Identities=22%  Similarity=0.588  Sum_probs=23.4

Q ss_pred             CCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           57 IFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        57 ~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      ..|...+.|+++. ++|.|.|.+||.|+
T Consensus         7 ~~C~~~A~C~Nt~-Gsy~C~C~~Gy~Gd   33 (40)
T d1gl4a2           7 HQCSVHAECRDYA-TGFCCRCVANYTGN   33 (40)
T ss_dssp             GGSCTTEEEEECS-SCEEEEECTTEEEC
T ss_pred             CCCCCCCEeecCC-CCeEeECCCCCcCC
Confidence            4567778999998 69999999999987

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=5e-05  Score=36.90  Aligned_cols=33  Identities=18%  Similarity=0.474  Sum_probs=25.0

Q ss_pred             CCCCCCC--CCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           50 SGTPCGQ--IFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        50 ~~~~C~~--~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      ++++|..  ..|.+ +.|+++. |+|.|.|++||...
T Consensus         2 DinEC~~~~~~c~~-~~C~Nt~-Gsy~C~C~~Gy~l~   36 (43)
T d1uzka2           2 DIDECQELPGLCQG-GKCINTF-GSFQCRCPTGYYLN   36 (43)
T ss_dssp             ECCHHHHCGGGGBT-SEEEECS-SCEEEECCTTCCBC
T ss_pred             CcccccCCCCCcCC-CEEECCC-CCeEeECCCCCeEC
Confidence            4566653  44654 5899999 79999999999765

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00053  Score=34.64  Aligned_cols=21  Identities=19%  Similarity=0.460  Sum_probs=18.2

Q ss_pred             CeeeeCCCCCeeeeCCCCCCCC
Q 044268           63 AQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        63 g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      ..|+++. |+|.|.|++||...
T Consensus        24 ~~C~Nt~-GsY~C~C~~Gy~l~   44 (53)
T d1apqa_          24 HLCHNYV-GGYFCSCRPGYELQ   44 (53)
T ss_dssp             SEEEEET-TEEEEECSTTCEEC
T ss_pred             CEeEcCC-CCeEeECCCCCeEC
Confidence            4899999 79999999999743

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00052  Score=31.20  Aligned_cols=27  Identities=15%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             CCCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           56 QIFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        56 ~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      .+||.|+ +|.+.. ++|.|.|..||..-
T Consensus         7 gnpCGnG-TCtNvi-GgFec~C~~GFepg   33 (39)
T d1emoa2           7 GNPCGNG-TCKNVI-GGFECTCEEGFEPG   33 (39)
T ss_dssp             TCSSSSS-CEEECS-SSEEECCSSSSCCC
T ss_pred             CCccCCc-eeeecc-cceEEeecCCcCCC
Confidence            3788874 999988 79999999998654

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00047  Score=32.92  Aligned_cols=30  Identities=20%  Similarity=0.535  Sum_probs=22.5

Q ss_pred             CCCCC-CCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           52 TPCGQ-IFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        52 ~~C~~-~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      ++|.. .+|..  .|+++. ++|.|.|++||...
T Consensus         2 dEC~~~~~C~~--~C~n~~-Gsy~C~C~~Gy~L~   32 (41)
T d1i0ua2           2 DECQDPDTCSQ--LCVNLE-GGYKCQCEEGFQLD   32 (41)
T ss_dssp             CTTTTTTSCSS--CEECSS-SCCEECCCTTEEEC
T ss_pred             ccCCCCCCCCC--EeECCC-CCEEeECCCCCeEC
Confidence            45542 45654  899988 79999999999844

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0016  Score=29.54  Aligned_cols=30  Identities=27%  Similarity=0.928  Sum_probs=23.5

Q ss_pred             cCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc
Q 044268            9 TMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus         9 ~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      |+|+-.  +||-| ++|.+..++  |.|.|..||.
T Consensus         2 dECsig--npCGn-GTCtNviGg--Fec~C~~GFe   31 (39)
T d1emoa2           2 DECSVG--NPCGN-GTCKNVIGG--FECTCEEGFE   31 (39)
T ss_dssp             CGGGTT--CSSSS-SCEEECSSS--EEECCSSSSC
T ss_pred             CccccC--CccCC-ceeeecccc--eEEeecCCcC
Confidence            445432  38875 789999999  9999999996

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.0011  Score=33.67  Aligned_cols=48  Identities=23%  Similarity=0.394  Sum_probs=28.3

Q ss_pred             cCCCCCEEeecCCCcceEe-eCCCCCcCCCCccCCCCCCCCCCCCCCee
Q 044268           18 WCEHGGKCEEIVQGEMYDC-KCPAGYAGEHCEHSGTPCGQIFCFHEAQC   65 (138)
Q Consensus        18 pC~~~~~C~~~~~~~~~~C-~C~~g~~g~~C~~~~~~C~~~~C~~~g~C   65 (138)
                      ||.+++.|..........| .|..+|+|.+|+.-.+....+|...++.|
T Consensus         2 pC~~~~~c~~~~~~~~~vC~~C~~~~~G~~Ce~C~~g~yg~P~~~~g~C   50 (55)
T d1kloa1           2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPV   50 (55)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSC
T ss_pred             cCcCCCccceeCCCCCEEcCCCCCCCccCcccccCCccccCcccCCCcC
Confidence            4666666654322212677 59999999999764444333455444444

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.00087  Score=31.87  Aligned_cols=29  Identities=38%  Similarity=0.974  Sum_probs=15.1

Q ss_pred             CCCCCEEeecCCCcceEeeCCCCCcCCCCc
Q 044268           19 CEHGGKCEEIVQGEMYDCKCPAGYAGEHCE   48 (138)
Q Consensus        19 C~~~~~C~~~~~~~~~~C~C~~g~~g~~C~   48 (138)
                      |.| |.|.-......+.|.|..||+|..|+
T Consensus        10 Cih-G~C~~i~~l~~~~C~C~~gY~G~RCq   38 (41)
T d1xdtr_          10 CIH-GECKYVKELRAPSCICHPGYHGERCH   38 (41)
T ss_dssp             CSS-EEECCBGGGTBCCEEECTTEESTTCC
T ss_pred             eEC-cEEeecCcCCCceeECCCCCeecCcc
Confidence            555 66642221112566666666666664

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0012  Score=31.32  Aligned_cols=30  Identities=30%  Similarity=0.750  Sum_probs=23.3

Q ss_pred             CCCCCCCeeee--CCCCCeeeeCCCCCCCCCCCCC
Q 044268           57 IFCFHEAQCLA--LSQVHNACDCPPDWKGSADCSL   89 (138)
Q Consensus        57 ~~C~~~g~C~~--~~~~~~~C~C~~g~~g~~~C~~   89 (138)
                      +.|.+ |.|..  .. ....|+|+.||+|. +|+.
T Consensus         8 ~yCih-G~C~~i~~l-~~~~C~C~~gY~G~-RCq~   39 (41)
T d1xdtr_           8 DFCIH-GECKYVKEL-RAPSCICHPGYHGE-RCHG   39 (41)
T ss_dssp             TCCSS-EEECCBGGG-TBCCEEECTTEEST-TCCE
T ss_pred             CEeEC-cEEeecCcC-CCceeECCCCCeec-Cccc
Confidence            46777 78864  33 37789999999999 9974

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0027  Score=30.77  Aligned_cols=21  Identities=14%  Similarity=0.264  Sum_probs=18.1

Q ss_pred             CeeeeCCCCCeeeeCCCCCCCC
Q 044268           63 AQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        63 g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      ..|+++. ++|.|.|++||...
T Consensus        16 ~~C~Nt~-Gsy~C~C~~Gy~l~   36 (45)
T d1szba2          16 HHCHNHL-GGFYCSCRAGYVLH   36 (45)
T ss_dssp             SEEEEET-TEEEEECCTTEEEC
T ss_pred             CCCccCC-CCeEEECCCCCeEC
Confidence            4899998 79999999999744

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.08  E-value=0.0019  Score=31.36  Aligned_cols=20  Identities=15%  Similarity=0.250  Sum_probs=17.5

Q ss_pred             CeeeeCCCCCeeeeCCCCCCC
Q 044268           63 AQCLALSQVHNACDCPPDWKG   83 (138)
Q Consensus        63 g~C~~~~~~~~~C~C~~g~~g   83 (138)
                      ..|+++. ++|.|.|++||.-
T Consensus        16 ~~C~Nt~-gsy~C~C~~Gy~L   35 (45)
T d1nt0a3          16 HYCHNYL-GGYYCSCRVGYIL   35 (45)
T ss_dssp             SEEEEET-TEEEEECCTTEEE
T ss_pred             CEeecCC-CCEEEeCCCCCEE
Confidence            4899998 6999999999963

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0054  Score=29.16  Aligned_cols=25  Identities=28%  Similarity=0.654  Sum_probs=20.3

Q ss_pred             CCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           57 IFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        57 ~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      .+|..  .|+++. ++|.|.|+.||...
T Consensus         9 ~~C~~--~C~n~~-Gsy~C~C~~Gy~L~   33 (42)
T d1nzia2           9 VPCSH--FCNNFI-GGYFCSCPPEYFLH   33 (42)
T ss_dssp             CCSSS--EEEEET-TEEEEECCTTCEEC
T ss_pred             cCCCC--EeecCC-CCEEEeCCCCCEEC
Confidence            45654  899998 79999999999744

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0063  Score=28.59  Aligned_cols=29  Identities=28%  Similarity=0.584  Sum_probs=21.7

Q ss_pred             CCCCC--CCCCCCCeeeeCCCCCeeeeCCCCCCC
Q 044268           52 TPCGQ--IFCFHEAQCLALSQVHNACDCPPDWKG   83 (138)
Q Consensus        52 ~~C~~--~~C~~~g~C~~~~~~~~~C~C~~g~~g   83 (138)
                      ++|..  ..|..  .|+++. ++|.|.|++||.-
T Consensus         3 neC~~~nggC~h--~C~n~~-g~~~C~C~~Gy~L   33 (40)
T d3bpse1           3 NECLDNNGGCSH--VCNDLK-IGYECLCPDGFQL   33 (40)
T ss_dssp             CGGGTGGGGCSS--EEEECS-SSEEEECCTTCCE
T ss_pred             ccCCCCCCCCcC--EEEcCC-CCEEEECCCCCEE
Confidence            44543  34654  899998 6999999999964

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.015  Score=28.65  Aligned_cols=26  Identities=38%  Similarity=0.830  Sum_probs=21.2

Q ss_pred             CCCCCEEeecCCCcceEeeCCCCCc----CCCCc
Q 044268           19 CEHGGKCEEIVQGEMYDCKCPAGYA----GEHCE   48 (138)
Q Consensus        19 C~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~   48 (138)
                      |.+  .|++++++  |.|.|+.||.    ++.|+
T Consensus         9 C~~--~C~~~~g~--~~C~C~~Gy~L~~D~~tC~   38 (50)
T d1autl2           9 CTH--YCLEEVGW--RRCSCAPGYKLGDDLLQCH   38 (50)
T ss_dssp             CSS--EEEECSSS--EEEECCTTEEECTTSSCEE
T ss_pred             ccc--EeecCCCC--eEEECCCCCEECCCCCccc
Confidence            554  89999988  9999999997    55664

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.029  Score=26.02  Aligned_cols=31  Identities=32%  Similarity=0.735  Sum_probs=23.3

Q ss_pred             CccCccCCCCccCCCCCEEeecCCCcceEeeCCCCCc
Q 044268            7 EMTMCDGTNEFWCEHGGKCEEIVQGEMYDCKCPAGYA   43 (138)
Q Consensus         7 ~~~~C~~~~~~pC~~~~~C~~~~~~~~~~C~C~~g~~   43 (138)
                      .+|+|...   +|..  .|.....+ +|+|.|..||.
T Consensus         3 ~vDPCf~~---~CE~--qCqP~~~~-~Y~CiCaeGFa   33 (43)
T d1dx5i1           3 PVDPCFRA---NCEY--QCQPLDQT-SYLCVCAEGFA   33 (43)
T ss_dssp             CCCGGGGC---CCSS--EEEECSSS-CEEEECCTTEE
T ss_pred             ccccccCC---Ccce--eeeeCCCC-cceEEeccccc
Confidence            46788877   7875  78765443 39999999985

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.019  Score=28.36  Aligned_cols=26  Identities=35%  Similarity=0.949  Sum_probs=21.3

Q ss_pred             CCCCCEEeecCCCcceEeeCCCCCc----CCCCc
Q 044268           19 CEHGGKCEEIVQGEMYDCKCPAGYA----GEHCE   48 (138)
Q Consensus        19 C~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~   48 (138)
                      |.+  .|++++++  |.|.|+.||.    ++.|.
T Consensus        10 C~h--~C~n~~g~--~~C~C~~Gy~L~~D~~tC~   39 (51)
T d2p3ua1          10 CDQ--FCHEEQNS--VVCSCARGYTLADNGKACI   39 (51)
T ss_dssp             CSS--EEEEETTE--EEEECCTTEEECTTSSCEE
T ss_pred             ccc--EeecCCCC--eEeEcCCCCEECCCCCccc
Confidence            654  89999988  9999999997    55664

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.033  Score=25.82  Aligned_cols=32  Identities=28%  Similarity=0.529  Sum_probs=23.8

Q ss_pred             CCCCCCCCCCCCCeeeeCCCCCeeeeCCCCCCCC
Q 044268           51 GTPCGQIFCFHEAQCLALSQVHNACDCPPDWKGS   84 (138)
Q Consensus        51 ~~~C~~~~C~~~g~C~~~~~~~~~C~C~~g~~g~   84 (138)
                      +++|...+|..  .|.....+.|.|+|..||...
T Consensus         4 vDPCf~~~CE~--qCqP~~~~~Y~CiCaeGFaP~   35 (43)
T d1dx5i1           4 VDPCFRANCEY--QCQPLDQTSYLCVCAEGFAPI   35 (43)
T ss_dssp             CCGGGGCCCSS--EEEECSSSCEEEECCTTEEEE
T ss_pred             cccccCCCcce--eeeeCCCCcceEEeccccccC
Confidence            45676677765  788766568999999998643

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.19  E-value=0.012  Score=29.06  Aligned_cols=26  Identities=31%  Similarity=0.884  Sum_probs=20.1

Q ss_pred             CCCCCEEeecCCCcceEeeCCCCCc----CCCCc
Q 044268           19 CEHGGKCEEIVQGEMYDCKCPAGYA----GEHCE   48 (138)
Q Consensus        19 C~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~   48 (138)
                      |.+  .|++++++  |.|.|+.||.    +..|.
T Consensus         8 C~h--~C~~~~~~--~~C~C~~Gy~L~~D~~tC~   37 (51)
T d1kigl_           8 CDQ--FCREERSE--VRCSCAHGYVLGDDSKSCV   37 (51)
T ss_dssp             SSS--CCCEETTE--ECCCCCTTEEECTTSSCEE
T ss_pred             ccc--EeEcCCCc--EEeEcCCCCEECCCCCccc
Confidence            544  68888888  9999999996    55663

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.32  E-value=0.35  Score=24.10  Aligned_cols=23  Identities=30%  Similarity=0.819  Sum_probs=18.4

Q ss_pred             EEeecCC-CcceEeeCCCCCc----CCCCc
Q 044268           24 KCEEIVQ-GEMYDCKCPAGYA----GEHCE   48 (138)
Q Consensus        24 ~C~~~~~-~~~~~C~C~~g~~----g~~C~   48 (138)
                      .|++.++ +  |.|.|+.||.    ++.|+
T Consensus        13 ~C~~~~~~~--~~C~C~~Gy~L~~D~~tC~   40 (57)
T d1rfnb_          13 FCKNSADNK--VVCSCTEGYRLAENQKSCE   40 (57)
T ss_dssp             EEEECTTSC--EEEECCTTEEECTTSSSEE
T ss_pred             EeeeCCCCC--eEeECCCCCEECCCCCccc
Confidence            8988765 5  9999999997    55664

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.052  Score=23.41  Aligned_cols=24  Identities=38%  Similarity=0.987  Sum_probs=16.3

Q ss_pred             CCCCCeeeeCCCCCeeeeCCCCCCCCCCCC
Q 044268           59 CFHEAQCLALSQVHNACDCPPDWKGSADCS   88 (138)
Q Consensus        59 C~~~g~C~~~~~~~~~C~C~~g~~g~~~C~   88 (138)
                      |..+|.|.     -..|.|..||+|+ .|.
T Consensus         5 C~ghG~C~-----CG~C~C~~gw~G~-~CN   28 (31)
T d1jv2b4           5 CSGHGQCS-----CGDCLCDSDWTGY-YCN   28 (31)
T ss_dssp             SCCCTTCC-----STTTCCCTTEESS-SSC
T ss_pred             ccCCCccc-----CCceEccCCcccc-ccc
Confidence            44555553     2348899999999 774

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.21  Score=24.25  Aligned_cols=21  Identities=29%  Similarity=0.847  Sum_probs=15.6

Q ss_pred             CCCCCEEeecC------CCcceEeeCCCCCc
Q 044268           19 CEHGGKCEEIV------QGEMYDCKCPAGYA   43 (138)
Q Consensus        19 C~~~~~C~~~~------~~~~~~C~C~~g~~   43 (138)
                      |.+  .|+..+      ++  |.|.|+.||.
T Consensus        14 C~h--~Cl~~p~~~n~~~~--y~C~C~~G~~   40 (50)
T d1ijqa2          14 CQY--LCLPAPQINPHSPK--FTCACPDGML   40 (50)
T ss_dssp             CSS--EEEECCCCSTTCCS--EEEECCTTCE
T ss_pred             CcC--ccCCCcCcccCCCC--EEEeCCCCCE
Confidence            544  787443      45  9999999996

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.64  E-value=0.15  Score=23.78  Aligned_cols=21  Identities=33%  Similarity=1.072  Sum_probs=14.6

Q ss_pred             CCeeeeCCCCCeeeeCCCCCCCCCCCC
Q 044268           62 EAQCLALSQVHNACDCPPDWKGSADCS   88 (138)
Q Consensus        62 ~g~C~~~~~~~~~C~C~~g~~g~~~C~   88 (138)
                      +|.|..     ..|.|.+||+|. .|+
T Consensus        20 hG~C~~-----G~C~C~~Gw~G~-~Ce   40 (41)
T d1l3ya_          20 RGLCFC-----GKCRCHPGFEGS-ACQ   40 (41)
T ss_dssp             HEEEET-----TEEEECTTCCTT-TTC
T ss_pred             CCeEEC-----CEEEcCCCCccc-Ccc
Confidence            456642     258888888888 776

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.81  E-value=0.39  Score=23.54  Aligned_cols=27  Identities=33%  Similarity=0.957  Sum_probs=19.5

Q ss_pred             CCCCCEEeecCCCcceEeeCCCCCc----CCCCc
Q 044268           19 CEHGGKCEEIVQGEMYDCKCPAGYA----GEHCE   48 (138)
Q Consensus        19 C~~~~~C~~~~~~~~~~C~C~~g~~----g~~C~   48 (138)
                      |.+  .|++.+++ .|.|.|+.||.    ++.|.
T Consensus         9 C~h--~C~~~~~~-~~~C~C~~Gy~L~~D~~tC~   39 (53)
T d2bz6l1           9 CEQ--YCSDHTGT-KRSCRCHEGYSLLADGVSCT   39 (53)
T ss_dssp             CSS--EEEEETTT-EEEEECCTTEEECTTSSCEE
T ss_pred             CcC--EeeeCCCC-CEEeECCCCCEECCCCCccc
Confidence            544  78888764 27899999996    45564